BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF2069
(344 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134046292|ref|YP_001097777.1| polysaccharide deacetylase... 352 1e-95
gi|117923464|ref|YP_864081.1| polysaccharide deacetylase [M... 252 3e-65
gi|149174397|ref|ZP_01853024.1| possible polysaccharide dea... 245 3e-63
gi|156453272|ref|ZP_02059636.1| polysaccharide deacetylase ... 238 5e-61
gi|33864974|ref|NP_896533.1| possible polysaccharide deacet... 123 2e-26
gi|148926043|ref|ZP_01809729.1| polysaccharide deacetylase ... 113 2e-23
gi|57238358|ref|YP_179486.1| polysaccharide deacetylase fam... 107 8e-22
gi|78358290|ref|YP_389739.1| polysaccharide deacetylase fam... 100 1e-19
gi|120554560|ref|YP_958911.1| polysaccharide deacetylase [M... 73 3e-11
gi|110600528|ref|ZP_01388746.1| Polysaccharide deacetylase ... 68 8e-10
gi|145617888|ref|ZP_01773951.1| polysaccharide deacetylase ... 67 2e-09
gi|126696773|ref|YP_001091659.1| hypothetical protein P9301... 64 2e-08
gi|15893727|ref|NP_347076.1| Predicted xylanase/chitin deac... 62 4e-08
gi|86159348|ref|YP_466133.1| Polysaccharide deacetylase [An... 61 1e-07
gi|126640988|ref|YP_001083972.1| putative lipoprotein [Acin... 60 2e-07
gi|57242481|ref|ZP_00370419.1| conserved hypothetical prote... 60 3e-07
gi|90407054|ref|ZP_01215243.1| polysaccharide deacetylase f... 59 3e-07
gi|94986914|ref|YP_594847.1| predicted xylanase/chitin deac... 59 4e-07
gi|16080931|ref|NP_391759.1| hypothetical protein BSU38800 ... 58 9e-07
gi|148378076|ref|YP_001252617.1| probable polysaccharide de... 57 2e-06
gi|125717874|ref|YP_001035007.1| Xylanase/chitin deacetylas... 56 4e-06
gi|78044641|ref|YP_359146.1| polysaccharide deacetylase fam... 55 5e-06
gi|57242482|ref|ZP_00370420.1| Polysaccharide deacetylase f... 55 6e-06
gi|75994472|ref|YP_325586.1| hypothetical protein L7026 [Es... 55 6e-06
gi|153939830|ref|YP_001389433.1| polysaccharide deacetylase... 55 7e-06
gi|83648239|ref|YP_436674.1| predicted xylanase/chitin deac... 55 8e-06
>gi|134046292|ref|YP_001097777.1| polysaccharide deacetylase [Methanococcus maripaludis C5]
gi|132663917|gb|ABO35563.1| polysaccharide deacetylase [Methanococcus maripaludis C5]
Length = 324
Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats.
Identities = 185/333 (55%), Positives = 247/333 (74%), Gaps = 13/333 (3%)
Query: 4 TKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGE 63
TK+T++MYHY+R+L+ SRYP+IKGL+ LF+EQ+ YLKKHYNFV+IE II+A +GK
Sbjct: 3 TKVTVLMYHYVRNLENSRYPKIKGLNSDLFEEQIRYLKKHYNFVSIEDIISATEGK---- 58
Query: 64 NMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIH 123
LP VLLTFDD Y DHF VFPVL K++I+GAFY P+K I E +VLDVNKIH
Sbjct: 59 -----NKLPKKAVLLTFDDCYKDHFTYVFPVLVKHNIKGAFYVPLKCILEQKVLDVNKIH 113
Query: 124 FILALTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQ 183
FILA +SEDK L++EI +LL Y+E +DL +YY++KLA A+RFD +E IF+KRLLQ
Sbjct: 114 FILA-SSEDKKE-LIDEIYKLLDYYRETYDLEENEYYYKKLAKASRFDTEEVIFIKRLLQ 171
Query: 184 VELQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGT 243
VEL E+LR IT+ LF +V ++E +F ELY+ +Q++CM GMH GSH YDH WL +
Sbjct: 172 VELNEELRDIITNMLFQKIVNVEETTFWEELYLTKEQIKCMETFGMHFGSHSYDHYWLNS 231
Query: 244 LNKEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTTEVSLC 303
L KE+Q EI+ S + + + N+++WT+ YPYGSYNDDT+ +LK GCKL TT+V++
Sbjct: 232 LTKERQAEEIDLSLKHLSEMGINIDNWTLCYPYGSYNDDTLEILKEKGCKLAFTTDVAVY 291
Query: 304 SVSSVQDSIYKLPRLDTNDIPKDANAVVNKWYV 336
+ ++D+ Y++PRLDTND+PK ANA NKWYV
Sbjct: 292 DI--LKDNKYEIPRLDTNDLPKSANAEQNKWYV 322
>gi|117923464|ref|YP_864081.1| polysaccharide deacetylase [Magnetococcus sp. MC-1]
gi|117607220|gb|ABK42675.1| polysaccharide deacetylase [Magnetococcus sp. MC-1]
Length = 342
Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 133/327 (40%), Positives = 193/327 (59%), Gaps = 15/327 (4%)
Query: 4 TKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGE 63
+ L I+MYHY+R L++SRYP IKGL+ F QL+Y+++HY + +EQ+ AA G
Sbjct: 23 STLHIVMYHYVRPLRQSRYPAIKGLEKEAFLGQLDYIQRHYQVIGMEQLAAALVG----- 77
Query: 64 NMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIH 123
LPP LLTFDD Y+DH+++VFP L + AF+PPV A+ ++LDVNKIH
Sbjct: 78 ----AEPLPPRSALLTFDDGYLDHYLHVFPHLLARGLTAAFFPPVCAVERRQLLDVNKIH 133
Query: 124 FILA-LTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLL 182
FILA + +D+ L++ + Q + + L S +Y +D + I+ KR+L
Sbjct: 134 FILASVADQDR---LISALNQAIEAASAHYGLASVAHYEATWKKPFGYDTAQVIYFKRML 190
Query: 183 QVELQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLG 242
Q L + LR+QIT +LF+ V DE +F+HELYM+ QL+ M GMHVG HG H WL
Sbjct: 191 QHVLPQALRQQITHDLFSQFVTQDETAFAHELYMDSAQLRVMIQGGMHVGGHGDAHHWLN 250
Query: 243 TLNKEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTTEVSL 302
L+ E + +I+K+R F+ + + + YPYG YN T LL+ YG + +TTE
Sbjct: 251 HLDAEAARQDIQKTRSFLDDLGASTPIASFCYPYGGYNATTQQLLQEYGFSVAVTTEP-- 308
Query: 303 CSVSSVQDSIYKLPRLDTNDIPKDANA 329
V +D+ LPRLDTN +P+ +A
Sbjct: 309 LGVDLGRDTALSLPRLDTNVLPRQGDA 335
>gi|149174397|ref|ZP_01853024.1| possible polysaccharide deacetylase (xylanase, chitin deacetylase)
[Planctomyces maris DSM 8797]
gi|148846942|gb|EDL61278.1| possible polysaccharide deacetylase (xylanase, chitin deacetylase)
[Planctomyces maris DSM 8797]
Length = 316
Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 128/320 (40%), Positives = 185/320 (57%), Gaps = 14/320 (4%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENM 65
LT +MYHY+R++K SRYP IKGL+ FK QL+YL Y F++ EQ+IA G+
Sbjct: 11 LTTVMYHYVREIKNSRYPGIKGLEFAGFKRQLDYLGSQYEFISAEQLIAYITGE------ 64
Query: 66 LTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIHFI 125
P LLTFDD Y DHF VFP L K I G F+PP + + E+ +LDVN IHFI
Sbjct: 65 --SADFPEKACLLTFDDGYRDHFDFVFPELMKRKISGCFFPPARPVEENSLLDVNAIHFI 122
Query: 126 LALTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQVE 185
LA ++ L N++ L +F + + +LA R+D E I++KR+LQ E
Sbjct: 123 LASATDTNR--LFNDLNDEL--RARDFSESFIEQHISRLAQPGRYDPAEIIYIKRMLQRE 178
Query: 186 LQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGTLN 245
L +LR +IT +LF V E FS ELYM +++ + GM+VGSH Y H WL +
Sbjct: 179 LPFELRTEITRQLFEKYVEKSEAEFSKELYMTAAEIEELVRSGMYVGSHTYHHFWLNAVA 238
Query: 246 KEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTTEVSLCSV 305
+ Q+ EI++S +F+ + +W + YPYG+YN DT+ +L+ C +G TT+V S+
Sbjct: 239 ADTQEQEIDRSLQFLTNVGAPTRNWIMCYPYGAYNADTLEILQRKNCVIGFTTKVGASSL 298
Query: 306 SSVQDSIYKLPRLDTNDIPK 325
+ + ++ R DTND P+
Sbjct: 299 D--RQAALEMNRFDTNDFPQ 316
>gi|156453272|ref|ZP_02059636.1| polysaccharide deacetylase [Methylobacterium chloromethanicum CM4]
gi|156187852|gb|EDO20057.1| polysaccharide deacetylase [Methylobacterium chloromethanicum CM4]
Length = 322
Score = 238 bits (606), Expect = 5e-61, Method: Composition-based stats.
Identities = 125/332 (37%), Positives = 186/332 (56%), Gaps = 19/332 (5%)
Query: 4 TKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGE 63
+ LT++MYHY+R L +SR+P+IKGL++ F+ Q++YL+ Y V +++++ A
Sbjct: 3 SPLTVVMYHYVRPLARSRFPKIKGLELEAFRAQIDYLQDRYRPVRMDEVLDA-------- 54
Query: 64 NMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIH 123
+G LP LLTFDD Y DH+ VFP+L + +QGAFY P E +LDVN++H
Sbjct: 55 -ARSGRPLPERAALLTFDDGYADHYRYVFPILAERGLQGAFYVPRATALERDILDVNRVH 113
Query: 124 FILALTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQ 183
FILA + D L ++ + + FDL S D NRFD FVKRLLQ
Sbjct: 114 FILA--AVDDHNALAGQVAAMAEAARGRFDLPSIDELRSLYHVPNRFDPAAVNFVKRLLQ 171
Query: 184 VELQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGT 243
L LR +++ ELF V D SFS ELYM++DQ++ MA GMH G HG HLW+
Sbjct: 172 HALPSSLRAEMSSELFRVYVAADAHSFSEELYMSLDQMRVMARAGMHFGGHGDRHLWMSR 231
Query: 244 LNKEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTTEVSLC 303
++ E+ + + + I + T YPYG +++ +I LLK G + T+ +
Sbjct: 232 ATPAEKAAEVAGAVDLLDAIGVPHDRRTYCYPYGDFDEASIELLKAGGFQAAFTSHPDIA 291
Query: 304 SVSSVQDSIYKLPRLDTND------IPKDANA 329
+ Q +++LPR+DTND +P+DA+A
Sbjct: 292 ELG--QHPVFELPRIDTNDLAREMILPQDAHA 321
>gi|33864974|ref|NP_896533.1| possible polysaccharide deacetylase (xylanase, chitin deacetylase)
[Synechococcus sp. WH 8102]
gi|33638658|emb|CAE06953.1| possible polysaccharide deacetylase (xylanase, chitin deacetylase)
[Synechococcus sp. WH 8102]
Length = 327
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 107/335 (31%), Positives = 169/335 (50%), Gaps = 43/335 (12%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENM 65
++ I YHYIR+ S + + + F Q+EYL K+++ + I D +N
Sbjct: 3 ISFITYHYIRNSNHSTF-KPYARTVEEFIMQVEYLNKNFDIIDPNDIEKVQDCLKSNKN- 60
Query: 66 LTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIHFI 125
V+ TFDD Y DH + +LK Y ++G F+ P K I E + L+VN+IH +
Sbjct: 61 --------KGVIFTFDDGYKDHVV-ASQILKCYGVRGLFFIPGKVI-EGKELEVNRIHLL 110
Query: 126 L--ALTSEDKFPCLLNEIKQLLLKYQEE----FDLRSFDYYFEKLATANRFDNKETIFVK 179
++ E L I++ +K + + + S + Y ++L N FDN T+ +K
Sbjct: 111 TYSGISCEKLLSRLETTIRKEKMKIRTQDKACKEYVSIENYIQELINDNGFDNGYTLAIK 170
Query: 180 RLLQVELQEKL-RKQITDELFANVVGIDEESFSHE---LYMNIDQLQCMADCGMHVGSHG 235
RLLQ ++ + R +ELF N +G +E HE LYM ++ ++ G +G HG
Sbjct: 171 RLLQRDITDSTERAYAINELF-NKLG--DELDLHEMKTLYMKNTDIEKLSVDGHAMGPHG 227
Query: 236 YDHLWLGTLNKEQQKYEIEKS--------REFIQRINGNLNHWTISYPYGSYNDDTISLL 287
Y+H+WLGT N++ Q +IE S RE+I R W SYPYGS++++TI L+
Sbjct: 228 YNHVWLGTQNEKIQSQDIELSIKALENVIREYIVR------DW-YSYPYGSFDEETIRLM 280
Query: 288 KTYGCKLGLTTEVSLCSVSSVQDSIYKLPRLDTND 322
+ GLTT+ + + Y+L R DTND
Sbjct: 281 QENKITFGLTTD---WGEAHMDQGRYRLKRWDTND 312
>gi|148926043|ref|ZP_01809729.1| polysaccharide deacetylase family protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|145845522|gb|EDK22614.1| polysaccharide deacetylase family protein [Campylobacter jejuni
subsp. jejuni CG8486]
Length = 309
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 96/295 (32%), Positives = 150/295 (50%), Gaps = 22/295 (7%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENM 65
+ IIMYHYIR+ K + P + L I FK+QL++ +K + FVT + EN
Sbjct: 1 MKIIMYHYIRESLK-QLPNFRYLHIENFKKQLDFFEKEFGFVTYNDFLHL------KENP 53
Query: 66 LTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIHFI 125
L L N +LLTFDD DH+ VF L K + G F+ P + + +VLDV++IH++
Sbjct: 54 LFCNKLK-NKILLTFDDGLKDHYNYVFNELIKRKLFGIFFVPTRIFKQKKVLDVHRIHYL 112
Query: 126 LA-LTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQV 184
L + N IK +LK + L+ F Y+++L D+K T K L
Sbjct: 113 LGKMGGGILLNAAYNIIKPNMLK---KSSLKLFKNYYQELD-----DDKNTKDFKLLFNY 164
Query: 185 ELQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGTL 244
++ + +++I D++ N DEE F+ +LY+N ++L+ M++ GM + SH HL TL
Sbjct: 165 FIKPEYKEKILDQITINFWN-DEEIFN-DLYLNKNELKTMSENGMLIASHSSTHLSFKTL 222
Query: 245 NKEQQKYEIEKSREFIQR-INGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTT 298
+ QKYE++ S F+ I ++ SYPYG LK Y ++
Sbjct: 223 DIHNQKYELQTSISFLNSFIKPSIQ--VFSYPYGESTSYAKRWLKKYNFDFAFSS 275
>gi|57238358|ref|YP_179486.1| polysaccharide deacetylase family protein [Campylobacter jejuni
RM1221]
gi|57167162|gb|AAW35941.1| polysaccharide deacetylase family protein [Campylobacter jejuni
RM1221]
Length = 304
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 91/317 (28%), Positives = 160/317 (50%), Gaps = 22/317 (6%)
Query: 10 MYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENMLTGG 69
MYHY+R+ + P + L F +Q+ + K H++FV E + + K D
Sbjct: 1 MYHYVRN-NANNLPYFRYLSFENFCKQIFFFKNHFDFVQYEDFV---NLKQDLNIFEKIK 56
Query: 70 GLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIHFILALT 129
G +LL+FDD DH+ VFP L ++ I G F+ P + ++ + LDV++IH++L
Sbjct: 57 G----KILLSFDDGLKDHYDFVFPKLLEHKIFGLFFIPTQILSRKKALDVHRIHYLLGKW 112
Query: 130 SEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQVELQEK 189
LN I L+ ++ + F+ Y+++L D+ ET K L ++
Sbjct: 113 GGGLTKFTLNLIDSNALEKDKK---QLFEGYYKELD-----DDLETKNFKLLFNFYIKYD 164
Query: 190 LRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGTLNKEQQ 249
LR++I DEL + DEE +++ LY+N ++L+ M + M +GSH H ++KEQ+
Sbjct: 165 LREKILDELVKHFCS-DEEIYAN-LYLNPNELKDMYEANMLIGSHSKTHPNFLKISKEQE 222
Query: 250 KYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTTEVSLCSVSS-- 307
+ E+ S + ++ + + SYPYG ++ + LL C T+ V+ ++
Sbjct: 223 EIELFDSFKELENFSQKIK--IFSYPYGDFSPYSKELLSKNNCDFAFTSIVNSKDINKKD 280
Query: 308 VQDSIYKLPRLDTNDIP 324
++++ Y LPR D N P
Sbjct: 281 LKENYYTLPRYDCNIFP 297
>gi|78358290|ref|YP_389739.1| polysaccharide deacetylase family protein [Desulfovibrio
desulfuricans G20]
gi|78220695|gb|ABB40044.1| polysaccharide deacetylase family protein [Desulfovibrio
desulfuricans G20]
Length = 317
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 25/322 (7%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENM 65
+ I+MYHYIR + +P + L + F+ QL++ +K N VT EQ+ A +
Sbjct: 1 MKIVMYHYIRK-PDANFPYWRFLHVDDFRRQLDFFQKDGNIVTREQLEYALE-------- 51
Query: 66 LTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIHFI 125
G L LLTFDD DH+ V P L+ ++ G F + VLDV+ +H
Sbjct: 52 -HGDPLTDKDYLLTFDDGLRDHYQFVLPELQHRNVTGIFSCCAGSAMPVNVLDVHLVH-- 108
Query: 126 LALTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQVE 185
AL +L +K+ + Q + + F + KL N ET F KR++
Sbjct: 109 -ALIGAYGGEAMLAHLKKTIGSAQIDLNSTRFRHAVYKLQPR----NDETEF-KRIVNYC 162
Query: 186 LQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGTLN 245
L K R + ++L +N+ + E + Y+ +L+ M GM VG H H L L
Sbjct: 163 LDRKARTFVLEKLRSNL--LPEFNSDRCFYLQPAELKEMDAAGMIVGGHTVTHNLLARLC 220
Query: 246 KEQQKYEIEKSREFIQRINGNLNHWTISYPYG---SYNDDTISLLKTYGCKLGLTTEVSL 302
Q+ EI + +++ + G W +PYG SYN+ T+ +L+ +G + L+ +
Sbjct: 221 PAAQREEIGSNIDWLSAVLGRRILW-FCFPYGGEISYNEYTLQILEEHGIRYCLSVDSRN 279
Query: 303 CSVSSVQDSIYKLPRLDTNDIP 324
V ++ + LPR D + P
Sbjct: 280 VVVDDLEKPL-TLPRYDCMEFP 300
>gi|120554560|ref|YP_958911.1| polysaccharide deacetylase [Marinobacter aquaeolei VT8]
gi|120324409|gb|ABM18724.1| polysaccharide deacetylase [Marinobacter aquaeolei VT8]
Length = 337
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 38/276 (13%)
Query: 8 IIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENMLT 67
I+MYH + SR P+ + F+ Q+ Y+ +H N VT+ QI ++ G +
Sbjct: 29 ILMYH-----RFSRLPKNGYVSAEEFEWQVRYIARHLNPVTVSQIASSLYGSHE------ 77
Query: 68 GGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIHFILA 127
LP + V +T DD Y D + +P+LKKY + FY ++ L +++ ++L
Sbjct: 78 ---LPRSSVAITVDDGYQDFYSIAWPILKKYGVPATFYVTTGFVSGDLWLWPDQLRYLLM 134
Query: 128 LTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLLQVELQ 187
K P + Q FDL F E +A+ F+++ + LL +
Sbjct: 135 -----KAP-----------QSQATFDLGLFR--IETPLSADDFESEFWRVNQILLLADDA 176
Query: 188 EKLRKQITDELFANVVGIDEESFSHELYMNI--DQLQCMADCGMHVGSHGYDHLWLGTLN 245
+KL+ + A ++ E + + DQL+ M G+ VG H H L ++
Sbjct: 177 QKLQCLAS---MARTWQVELPKRPPEAFKPVTWDQLKEMQAEGLEVGGHTVTHPSLARVS 233
Query: 246 KEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYND 281
EQ + EI + ++++ GN+ + YP G+ +D
Sbjct: 234 SEQARNEILGCGKMLEKMLGNVTR-SFCYPNGTPDD 268
>gi|110600528|ref|ZP_01388746.1| Polysaccharide deacetylase [Geobacter sp. FRC-32]
gi|110548741|gb|EAT61949.1| Polysaccharide deacetylase [Geobacter sp. FRC-32]
Length = 323
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 49/331 (14%)
Query: 3 ETKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDG 62
E K I+ YH I +P LD F++ L++L ++N +++E +
Sbjct: 18 EMKPIILTYHSIHS-GNLPFPIWTQLDYLYFEQHLQFLSSNFNCISLESL---------- 66
Query: 63 ENMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKI 122
+ + G P V++TFDD Y ++F N +P+L KY I + + + + +KI
Sbjct: 67 QKQIQNGNFEPYSVVVTFDDGYHNNFFNAYPLLLKYKIPATIFVTAGFVDKDEYIWSDKI 126
Query: 123 HFILALTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIFVKRLL 182
IL+L D LN++ + +++ A A R + V R
Sbjct: 127 AAILSLL--DNVAIDLNDVTVKIESVKDK-------------AVAYR------MIVNRFK 165
Query: 183 QVELQEKLRKQITDELFANVVGIDEESFSHEL------YMNIDQLQCMADCGM-HVGSHG 235
+ E ++ I++ G+ EE+ L +++ D++ M D G+ +GSHG
Sbjct: 166 ALHPDE-IKTSISN--LMEYFGVSEENLKTPLLKSCFGHLDWDEIIIMRDSGLIEIGSHG 222
Query: 236 YDHLWLGTLNKEQQKYEIEKSREFIQRINGNLNHWT-ISYPYGSYNDDTIS---LLKTYG 291
H L L+ ++ K EI +S+ I+ +YP G ND T + LL
Sbjct: 223 MSHSILARLSDKEAKAEIFQSKNTIETKLARFGPVKFFAYPNGGENDFTRAHRNLLIESN 282
Query: 292 CKLGLTTEVSLCSVSSVQDSIYKLPRLDTND 322
+ LTT ++ S ++LPR+ D
Sbjct: 283 YQGVLTTRINRVDQGS---DCFELPRVCIGD 310
>gi|145617888|ref|ZP_01773951.1| polysaccharide deacetylase [Geobacter bemidjiensis Bem]
gi|144945935|gb|EDJ80997.1| polysaccharide deacetylase [Geobacter bemidjiensis Bem]
Length = 219
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 1 MRETKLTIIMYHYIRDLKKSRYPRI-KGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGK 59
+ +L ++MYH + +S P + L + +F+ QLE+L KHY FVT++Q+I A D
Sbjct: 28 LNRERLLVVMYHGVT--TESYTPAVWTQLPLPMFRSQLEFLSKHYRFVTLQQVIRALD-- 83
Query: 60 MDGENMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAI 111
G LP L+TFDD +++ +PVLK+ I A + V I
Sbjct: 84 -------RGEPLPERAALITFDDGLKNNYSVAYPVLKELGIPAAIFLTVNMI 128
>gi|126696773|ref|YP_001091659.1| hypothetical protein P9301_14351 [Prochlorococcus marinus str. MIT
9301]
gi|126543816|gb|ABO18058.1| Hypothetical protein P9301_14351 [Prochlorococcus marinus str. MIT
9301]
Length = 308
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 77/325 (23%), Positives = 146/325 (44%), Gaps = 28/325 (8%)
Query: 4 TKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGE 63
+ ++ +H+ D K P ++ + F+ ++YL+ Y + + K
Sbjct: 2 SSFGVMFHHFHGDYHK---PSQGSINKNDFERIIDYLQSKYLIINANSYLKKIINK---- 54
Query: 64 NMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEH-RVLDVNKI 122
L PN + LTFDDA + P+L++ +I F+ + + L++ +
Sbjct: 55 ------SLKPNEICLTFDDALRSQYDIAIPILRQRNISAFFFIYSSVFSNNPSKLEIYRY 108
Query: 123 HFILALTSEDKFPCLLNEIKQLLL--KYQEEFD-LRSFDYYFEKLATANRFDNKETIFVK 179
S D+F +I + KY E + +S +Y L+ + N + F +
Sbjct: 109 FRSNYFQSIDQFYSQFFDIVKTNFRDKYNSELEQYKSLNY----LSHFPFYTNSDKWF-R 163
Query: 180 RLLQVELQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDH- 238
L V L+E QI ++ N D+ S S +L++ QL+ M G +G H Y H
Sbjct: 164 YLRDVVLKEYNYDQIMLKIM-NKCNFDKSSASKKLWIKTSQLKEMHQEGHIIGLHSYSHP 222
Query: 239 LWLGTLNKEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLKTYGCKLGLTT 298
+ L +QQ E +K+ ++++ ++S+P G YN DT+ +LK G K+G +
Sbjct: 223 TKIDNLPYQQQNEEYQKNLYHLKKVLNVEKIESMSHPCGRYNGDTLDILKDIGIKVGFRS 282
Query: 299 EVSLCSVSSVQDSIYKLPRLDTNDI 323
+ S+ ++S+ ++PR D ++I
Sbjct: 283 NM---SIKETKNSL-EIPREDHSNI 303
>gi|15893727|ref|NP_347076.1| Predicted xylanase/chitin deacetilase, similar to yxkH B.subtilis
[Clostridium acetobutylicum ATCC 824]
gi|15023291|gb|AAK78416.1|AE007558_6 Predicted xylanase/chitin deacetilase, similar to yxkH B.subtilis
[Clostridium acetobutylicum ATCC 824]
Length = 295
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 13/102 (12%)
Query: 5 KLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLK-KHYNFVTIEQIIAAFDGKMDGE 63
K+ ++MYH D+ + + +D F+EQ++YLK +YN +TI+Q +
Sbjct: 54 KIPVLMYH---DINNDKNMNLMKIDKKSFEEQMKYLKDNNYNTLTIDQFY---------D 101
Query: 64 NMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFY 105
+++ G +P VL+TFDD Y DH+ N +PVLKKY++ +
Sbjct: 102 SIINGKKVPKKSVLITFDDGYEDHYKNAYPVLKKYNLHATMF 143
>gi|86159348|ref|YP_466133.1| Polysaccharide deacetylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775859|gb|ABC82696.1| Polysaccharide deacetylase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 659
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 3 ETKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKH-YNFVTIEQIIAAFDGKMD 61
E +LTI+ YH + + ++ P+ + F Q+++L+ H Y FV+++ ++AA +G+
Sbjct: 30 EEELTILSYHEVAERAEALVPQY-AVSPTSFLRQMDWLRNHGYRFVSVDDLLAAREGRRP 88
Query: 62 GENMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHI 100
LPP VL+TFDDAY + N +P+LK + I
Sbjct: 89 ---------LPPKAVLVTFDDAYQSVYRNAWPILKMFRI 118
>gi|126640988|ref|YP_001083972.1| putative lipoprotein [Acinetobacter baumannii ATCC 17978]
gi|126386872|gb|ABO11370.1| putative lipoprotein [Acinetobacter baumannii ATCC 17978]
Length = 641
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 4 TKLTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKH-YNFVTIEQIIAAFDGKMDG 62
+ LT+I YH I D K + P+ + F E +++L+K+ ++F+T++Q+I A GK
Sbjct: 12 STLTVIGYHEITDTKNALIPQY-AVTTQQFTEHVDWLQKNGFHFITVDQLIRAHQGK--- 67
Query: 63 ENMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHI 100
LP PVLLT DD Y + N +PV+K I
Sbjct: 68 ------AALPTKPVLLTVDDGYQSFYQNAYPVIKAKKI 99
>gi|57242481|ref|ZP_00370419.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
gi|57016766|gb|EAL53549.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
Length = 121
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENM 65
+ I+MYHY+R+ P + L FK+QL+Y +K++ V+ E+ ++ E
Sbjct: 1 MKILMYHYVRE-SVPHLPFFRYLSFDNFKKQLDYFEKNFGLVSFEEFC-----RLKTEPK 54
Query: 66 LTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDVNKIH 123
+ N +LLTFDD +HF V+P L K G F+ P + + + L V+KIH
Sbjct: 55 FIN--VLKNKILLTFDDGLKEHFTLVYPELLKRGALGIFFMPSLVLEQEKALCVHKIH 110
>gi|90407054|ref|ZP_01215243.1| polysaccharide deacetylase family protein [Psychromonas sp. CNPT3]
gi|90311776|gb|EAS39872.1| polysaccharide deacetylase family protein [Psychromonas sp. CNPT3]
Length = 346
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 77/329 (23%), Positives = 141/329 (42%), Gaps = 49/329 (14%)
Query: 5 KLTIIMYHYIRDLKKSR--YPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDG 62
K+TI+ H I DLKK+ P + + L L KHY F++++ +A
Sbjct: 30 KITILYMHSIIDLKKTHNWLPLRDFTSLTDLEMSLSILNKHYKFISLQDALA-------- 81
Query: 63 ENMLTGGGLP-PNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVLDV-- 119
+L G +P N +++T DD Y ++ + + +KY I P + T H L +
Sbjct: 82 --ILKGQKMPIKNALVITLDDGYRNNISDARSIFQKYEI----IPTLFVATNHVSLQIPF 135
Query: 120 --NKIHFILALTSEDKFPCLLNEIKQLLLKYQEEFDLRSFDYYFEKLATANRFDNKETIF 177
+++ FIL + K P L +K + + + + + + I
Sbjct: 136 WFDRLDFIL---QQVKAPLLKIRLKNVFFTFNCH-SRSALQSTYAQFRVQVKLAFSSDIL 191
Query: 178 VKRLLQVELQEKLRKQ----ITDELFANVVG--IDEESFSHELYMNIDQLQCMADCGMHV 231
+++ L +L E+L K+ + D A G +D + +H+L + + V
Sbjct: 192 MQKYLH-KLAEQLEKELGCALGDAPDATHCGAIVDWQMLAHQL----------QNQSIEV 240
Query: 232 GSHGYDHLWLGTLNKEQQKYEIEKSREFI-QRINGNLNHWTISYPYGSYNDDTISLLKTY 290
G H H L ++ + E++ S+E I QR+ + YP SYND ++L Y
Sbjct: 241 GGHSVTHARLAYVDDACLRDELKNSQEIIEQRLKTAC--YAFCYPDNSYNDKVLALTNEY 298
Query: 291 GCKLGLTTEVSLCSVSSVQDSIYKLPRLD 319
+L TT+ L +++ D + +L R +
Sbjct: 299 -YELATTTDKGL---NTIGDDLMRLKRFN 323
>gi|94986914|ref|YP_594847.1| predicted xylanase/chitin deacetylase [Lawsonia intracellularis
PHE/MN1-00]
gi|94731163|emb|CAJ54525.1| predicted xylanase/chitin deacetylase [Lawsonia intracellularis
PHE/MN1-00]
Length = 367
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKH-YNFVTIEQIIAAFDGKMDGEN 64
L ++MYHYI S YP + H F++ + + ++ + +T+++ + F
Sbjct: 5 LPVLMYHYI-----SNYPSSISVSPHNFEKHCQGMAENGWRGITLQEAESFF-------- 51
Query: 65 MLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAITEHRVL 117
L G LPP VL+TFDD ++D+F+ +P+LKKY G + + I +++
Sbjct: 52 -LKGEKLPPKSVLITFDDGFLDNFVYAWPILKKYEHSGVIFTVTERILSEQIV 103
>gi|16080931|ref|NP_391759.1| hypothetical protein BSU38800 [Bacillus subtilis subsp. subtilis
str. 168]
gi|1783247|dbj|BAA11724.1| yxkH [Bacillus subtilis]
gi|2636415|emb|CAB15906.1| yxkH [Bacillus subtilis subsp. subtilis str. 168]
Length = 279
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 208 ESFSHELYMNIDQLQCMADCGMHVGSHGYDHLWLGTLNKEQQKYEIEKSREFIQRINGNL 267
+S H+ ++ +Q++ MA G+ + SH DHL L L +QQ+ E+ S++ N+
Sbjct: 154 KSIGHKHHLTEEQMKEMAQHGISIESHTIDHLELNGLTPQQQQSEMADSKKLFD----NM 209
Query: 268 NHWT---ISYPYGSYNDDTISLLKTYGCKLGLTTEVSLCSVSSVQDSIYKLPRL 318
H ISYP G YN++T+ + G ++G+TTE +S +Y L R+
Sbjct: 210 FHQQTTIISYPVGRYNEETLKAAEKTGYQMGVTTEP---GAASRDQGMYALHRV 260
>gi|148378076|ref|YP_001252617.1| probable polysaccharide deacetylase [Clostridium botulinum A str.
ATCC 3502]
gi|153932306|ref|YP_001382475.1| polysaccharide deacetylase family protein [Clostridium botulinum A
str. ATCC 19397]
gi|153936172|ref|YP_001386027.1| polysaccharide deacetylase family protein [Clostridium botulinum A
str. Hall]
gi|148287560|emb|CAL81624.1| probable polysaccharide deacetylase [Clostridium botulinum A str.
ATCC 3502]
gi|152928350|gb|ABS33850.1| polysaccharide deacetylase family protein [Clostridium botulinum A
str. ATCC 19397]
gi|152932086|gb|ABS37585.1| polysaccharide deacetylase family protein [Clostridium botulinum A
str. Hall]
Length = 289
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 220 QLQCMADCGMHVGSHGYDHLWLGTLNKEQQKYEIEKSREFIQRINGNLNHWT--ISYPYG 277
Q++ M + G+ + SH Y+H L L+ E+Q ++KS++ +++I LNH I+YPYG
Sbjct: 172 QIKEMDEAGIQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKI---LNHKVDFIAYPYG 228
Query: 278 SYNDDTISLLKTYGCKLGLTTEVSLCSVSSVQDSIYKLPRL 318
+N+++I K G K+ TT+ S+ QD IY L R+
Sbjct: 229 KWNEESIKAAKDSGYKMAFTTQGGW---SNKQDGIYTLNRV 266
>gi|125717874|ref|YP_001035007.1| Xylanase/chitin deacetylase, putative [Streptococcus sanguinis
SK36]
gi|125497791|gb|ABN44457.1| Xylanase/chitin deacetylase, putative [Streptococcus sanguinis
SK36]
Length = 321
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 213 ELYMNIDQLQCMADCGMHVGSHGYDHLWLGTLNKEQQKYEIEKSREFIQRINGNLNHWTI 272
E + +D+++ M D GM H +H L ++QQK E++ S+ ++ + + T+
Sbjct: 202 EDMLTLDEIKEMKDKGMSFEDHTVNHPDLSATAEDQQKIELKDSKSYLDK-ELSQTTTTV 260
Query: 273 SYPYGSYNDDTISLLKTYGCKLGLTTEVSLCSVSS 307
+YP G Y+D T+ + ++ G K+GLTT L S+S+
Sbjct: 261 AYPSGRYSDATLQIAESLGYKMGLTTNNGLASLSN 295
>gi|78044641|ref|YP_359146.1| polysaccharide deacetylase family protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996756|gb|ABB15655.1| polysaccharide deacetylase family protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 312
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 2 RETKLTIIMYHYIRDLKKSRYPRIKGLDIHL----FKEQLEYLKKH-YNFVTIEQIIAAF 56
RE + I+MYH K + P+ GL + + F Q+ +LK+H ++ V++++ +
Sbjct: 35 RERGVPILMYH-----KVNPDPKTGGLGLRVLPREFDWQMRFLKEHGFHTVSLDEAV--- 86
Query: 57 DGKMDGENMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFY 105
+ + G LP P+++TFDD Y D+++ FP+LKKY + +
Sbjct: 87 ------DYLEFGKPLPEKPIVITFDDGYRDNYVYAFPILKKYGFRATIF 129
>gi|57242482|ref|ZP_00370420.1| Polysaccharide deacetylase family [Campylobacter upsaliensis
RM3195]
gi|57016767|gb|EAL53550.1| Polysaccharide deacetylase family [Campylobacter upsaliensis
RM3195]
Length = 201
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 179 KRLLQVELQEKLRKQITDELFANVVGIDEESFSHELYMNIDQLQCMADCGMHVGSHGYDH 238
K LL L+E+ ++++ L A + E Y+N ++L+ M++ M +GSH + H
Sbjct: 49 KLLLNYNLKEEFKEEVLSALLAKC-KLSEAQIYENYYLNREELEIMSENQMLIGSHAHSH 107
Query: 239 LWLGTLNKEQQKYEIEKSREFIQRINGNLNHWTISYPYGSYNDDTISLLK 288
+ LN +Q+ E+ KS E + +N + T YPYG ++ ++ ++L+
Sbjct: 108 INFLNLNAKQEADEVRKSFEILSFLNPTIR--TFCYPYGEFSRNSRAILQ 155
>gi|75994472|ref|YP_325586.1| hypothetical protein L7026 [Escherichia coli O157:H7 EDL933]
gi|149930779|ref|YP_001294680.1| w0016 [Escherichia coli]
gi|37695767|gb|AAR00429.1|AF401292_30 w0016 [Escherichia coli]
gi|3253292|gb|AAC24351.1| unknown [Escherichia coli]
gi|3822140|gb|AAC70094.1| hypothetical protein [Escherichia coli O157:H7]
gi|4127813|emb|CAA72138.1| hypothetical protein [Escherichia coli]
Length = 273
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 14/100 (14%)
Query: 6 LTIIMYHYIRDLKKSRYPRIKGLDIHLFKEQLEYLKKHYNFVTIEQIIAAFDGKMDGENM 65
L ++MYH++ SR P + L F EQ+++L + N+ T+ + E
Sbjct: 7 LPVLMYHHV-----SRCPGLVTLSPETFCEQMKWLADN-NWRTVTS--------AELEYF 52
Query: 66 LTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFY 105
GG LP V+LTFDD Y+D+++ +PVLK+Y++ +
Sbjct: 53 YQGGTLPRKSVMLTFDDGYLDNWLRAWPVLKEYNLHAHIF 92
>gi|153939830|ref|YP_001389433.1| polysaccharide deacetylase family protein [Clostridium botulinum F
str. Langeland]
gi|152935726|gb|ABS41224.1| polysaccharide deacetylase family protein [Clostridium botulinum F
str. Langeland]
Length = 289
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 220 QLQCMADCGMHVGSHGYDHLWLGTLNKEQQKYEIEKSREFIQRINGNLNHWT--ISYPYG 277
Q++ M + G+ + SH Y+H L L+ E+Q ++KS++ +++I LNH I+YPYG
Sbjct: 172 QIKEMDEAGIQIASHTYNHDKLDDLSYEKQLQTMKKSKDDLEKI---LNHKVDFIAYPYG 228
Query: 278 SYNDDTISLLKTYGCKLGLTTEVSLCSVSSVQDSIYKLPRL 318
+N+++I K G K+ TT+ S+ Q+ IY L R+
Sbjct: 229 KWNEESIKAAKDSGYKMAFTTQGGW---SNKQNGIYTLNRV 266
>gi|83648239|ref|YP_436674.1| predicted xylanase/chitin deacetylase [Hahella chejuensis KCTC
2396]
gi|83636282|gb|ABC32249.1| predicted xylanase/chitin deacetylase [Hahella chejuensis KCTC
2396]
Length = 650
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 17/112 (15%)
Query: 3 ETKLTIIMYHYIRDLKKSRYPRI--KGLDIHLFKEQLEYLKKH-YNFVTIEQIIAAFDGK 59
E ++ YH D+K + RI L F E L ++K++ Y+ V+ +QII A +GK
Sbjct: 24 ENSYVVLGYHDFYDVKLNPTKRIFANTLSRDRFVEHLNWIKQNNYHPVSFQQIIDAKEGK 83
Query: 60 MDGENMLTGGGLPPNPVLLTFDDAYIDHFINVFPVLKKYHIQGAFYPPVKAI 111
LP N VLLTFDD Y + VFP+LK Y+ YP V A+
Sbjct: 84 ---------SKLPENAVLLTFDDGYESFYTTVFPLLKLYN-----YPAVIAL 121
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.321 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,305,468,765
Number of Sequences: 5470121
Number of extensions: 56416374
Number of successful extensions: 134341
Number of sequences better than 1.0e-05: 32
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 134275
Number of HSP's gapped (non-prelim): 52
length of query: 344
length of database: 1,894,087,724
effective HSP length: 133
effective length of query: 211
effective length of database: 1,166,561,631
effective search space: 246144504141
effective search space used: 246144504141
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)