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Cancer Genome Anatomy Project |
| NCI > CGAP > GAI > SNP Maps > Chr 1 > SNPs Localized to Interval 6 |
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D1S255 - D1S197 62.3 cM - 69.8 cM / 113.98 cR - 148.23 cR |
| UniGene | Gene Symbol | Description | SNP IDs | SNP Summary | CGAP Gene Info |
| Confirmed SNPs | |||||
| Hs.524690 | PPIE | Peptidylprolyl isomerase E (cyclophilin E) | CGAP-C-62762 |
SNPs | Gene Info |
| Hs.643560 | KIAA0467 | KIAA0467 | CGAP-C-17033 |
SNPs | Gene Info |
| Hs.456557 | RNF220 | Ring finger protein 220 | CGAP-C-2305 |
SNPs | Gene Info |
| Hs.163424 | NSUN4 | Fatty acid amide hydrolase | CGAP-C-12539 CGAP-C-16503 |
SNPs | Gene Info |
| Validated SNPs | |||||
| Hs.607723 | - | Transcribed locus, weakly similar to XP_001116727.1 PREDICTED: similar to zinc finger protein 415 isoform 1 [Macaca mulatta] | CGAP-C-273567 |
SNPs | Gene Info |
| Hs.449942 | INPP5B | Inositol polyphosphate-5-phosphatase, 75kDa | CGAP-C-616693 |
SNPs | Gene Info |
| Hs.524571 | CDCA8 | Cell division cycle associated 8 | CGAP-C-50644 |
SNPs | Gene Info |
| Hs.524626 | RHBDL2 | Rhomboid, veinlet-like 2 (Drosophila) | CGAP-C-618107 |
SNPs | Gene Info |
| Hs.715505 | HPCAL4 | Hippocalcin like 4 | CGAP-C-56392 CGAP-C-267752 |
SNPs | Gene Info |
| Hs.356554 | TRIT1 | TRNA isopentenyltransferase 1 | CGAP-C-49496 CGAP-C-265133 |
SNPs | Gene Info |
| Hs.472508 | LOC728448 | Peptidylprolyl isomerase E pseudogene | CGAP-C-64310 CGAP-C-64665 |
SNPs | Gene Info |
| Hs.406050 | DNALI1 | Dynein, axonemal, light intermediate chain 1 | CGAP-C-47833 CGAP-C-58044 CGAP-C-628345 |
SNPs | Gene Info |
| Hs.591501 | ZMPSTE24 | Zinc metallopeptidase (STE24 homolog, S. cerevisiae) | CGAP-C-606642 |
SNPs | Gene Info |
| Hs.470907 | AK2 | Adenylate kinase 2 | CGAP-C-48498 |
SNPs | Gene Info |
| Hs.571874 | SCMH1 | Sex comb on midleg homolog 1 (Drosophila) | CGAP-C-47789 |
SNPs | Gene Info |
| Hs.472566 | HEYL | Hairy/enhancer-of-split related with YRPW motif-like | CGAP-C-47753 |
SNPs | Gene Info |
| Hs.272062 | PTPRF | Protein tyrosine phosphatase, receptor type, F | CGAP-C-622973 |
SNPs | Gene Info |
| Hs.301756 | MED8 | Mediator complex subunit 8 | CGAP-C-57004 |
SNPs | Gene Info |
| Hs.708337 | - | Transcribed locus | CGAP-C-622975 |
SNPs | Gene Info |
| Hs.17118 | C1orf149 | Chromosome 1 open reading frame 149 | CGAP-C-242014 |
SNPs | Gene Info |
| Hs.20879 | ZNF691 | Zinc finger protein 691 | CGAP-C-54800 |
SNPs | Gene Info |
| Hs.3873 | PPT1 | Palmitoyl-protein thioesterase 1 | CGAP-C-263584 |
SNPs | Gene Info |
| Hs.346868 | EBNA1BP2 | EBNA1 binding protein 2 | CGAP-C-49147 CGAP-C-237352 CGAP-C-611569 |
SNPs | Gene Info |
| Hs.597915 | ST3GAL3 | ST3 beta-galactoside alpha-2,3-sialyltransferase 3 | CGAP-C-48290 |
SNPs | Gene Info |
| Hs.13024 | MMACHC | Methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria | CGAP-C-50817 CGAP-C-244230 |
SNPs | Gene Info |
| Hs.78601 | UROD | Uroporphyrinogen decarboxylase | CGAP-C-611051 |
SNPs | Gene Info |
| Hs.706748 | SLC2A1 | Solute carrier family 2 (facilitated glucose transporter), member 1 | CGAP-C-602304 |
SNPs | Gene Info |
| Hs.437656 | LEPRE1 | Leucine proline-enriched proteoglycan (leprecan) 1 | CGAP-C-48494 |
SNPs | Gene Info |
| Hs.26023 | FOXJ3 | Forkhead box J3 | CGAP-C-264004 CGAP-C-626493 |
SNPs | Gene Info |
| Hs.533549 | EIF2B3 | Eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa | CGAP-C-604843 CGAP-C-604844 |
SNPs | Gene Info |
| Hs.632403 | B4GALT2 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 | CGAP-C-50078 |
SNPs | Gene Info |
| Hs.420244 | FAM80A | Family with sequence similarity 80, member A | CGAP-C-256871 |
SNPs | Gene Info |
| Hs.525084 | HECTD3 | HECT domain containing 3 | CGAP-C-52353 |
SNPs | Gene Info |
| Hs.8008 | DMAP1 | DNA methyltransferase 1 associated protein 1 | CGAP-C-59218 |
SNPs | Gene Info |
| Hs.643560 | KIAA0467 | KIAA0467 | CGAP-C-48659 |
SNPs | Gene Info |
| Hs.456557 | RNF220 | Ring finger protein 220 | CGAP-C-12485 |
SNPs | Gene Info |
| Hs.238432 | GPBP1L1 | GC-rich promoter binding protein 1-like 1 | CGAP-C-256609 CGAP-C-256611 |
SNPs | Gene Info |
| Hs.319334 | NASP | Nuclear autoantigenic sperm protein (histone-binding) | CGAP-C-621789 CGAP-C-625027 |
SNPs | Gene Info |
| Hs.632415 | PLK3 | Polo-like kinase 3 (Drosophila) | CGAP-C-614403 |
SNPs | Gene Info |
| Hs.654435 | AKR1A1 | Aldo-keto reductase family 1, member A1 (aldehyde reductase) | CGAP-C-53273 |
SNPs | Gene Info |
| Hs.163424 | NSUN4 | Fatty acid amide hydrolase | CGAP-C-12069 CGAP-C-54619 CGAP-C-55355 CGAP-C-58598 |
SNPs | Gene Info |
| Hs.592859 | KIAA0494 | KIAA0494 | CGAP-C-52691 CGAP-C-59868 CGAP-C-60928 CGAP-C-240698 |
SNPs | Gene Info |
| Hs.406013 | KRT18 | Keratin 18 | CGAP-C-240379 |
SNPs | Gene Info |
| Predicted SNPs | |||||
| Hs.75528 | GNL2 | Guanine nucleotide binding protein-like 2 (nucleolar) | CGAP-C-2409032 CGAP-C-2409033 |
SNPs | Gene Info |
| Hs.449942 | INPP5B | Inositol polyphosphate-5-phosphatase, 75kDa | CGAP-C-2462441 CGAP-C-2462443 CGAP-C-2462444 CGAP-C-2462445 CGAP-C-2462446 CGAP-C-2462447 |
SNPs | Gene Info |
| Hs.471951 | SNIP1 | Smad nuclear interacting protein 1 | CGAP-C-2404023 |
SNPs | Gene Info |
| Hs.524571 | CDCA8 | Cell division cycle associated 8 | CGAP-C-2481824 CGAP-C-2481826 CGAP-C-2481828 CGAP-C-2481829 |
SNPs | Gene Info |
| Hs.57687 | FHL3 | Four and a half LIM domains 3 | CGAP-C-2475338 |
SNPs | Gene Info |
| Hs.512675 | RPS8 | Ribosomal protein S8 | CGAP-C-2463404 CGAP-C-2463406 CGAP-C-2463411 CGAP-C-2463413 CGAP-C-2463414 CGAP-C-2463415 CGAP-C-2463421 CGAP-C-2463422 CGAP-C-2463426 |
SNPs | Gene Info |
| Hs.532461 | RRAGC | Ras-related GTP binding C | CGAP-C-2458900 CGAP-C-2458903 CGAP-C-2458904 |
SNPs | Gene Info |
| Hs.699784 | - | Transcribed locus, strongly similar to NP_071440.1 Ras-related GTP binding C [Homo sapiens] | CGAP-C-2458902 |
SNPs | Gene Info |
| Hs.169900 | PABPC4 | Poly(A) binding protein, cytoplasmic 4 (inducible form) | CGAP-C-2445122 |
SNPs | Gene Info |
| Hs.293563 | AKIRIN1 | Akirin 1 | CGAP-C-2443160 CGAP-C-2443166 CGAP-C-2443167 CGAP-C-2443168 CGAP-C-2443169 |
SNPs | Gene Info |
| Hs.524626 | RHBDL2 | Rhomboid, veinlet-like 2 (Drosophila) | CGAP-C-2425294 |
SNPs | Gene Info |
| Hs.632385 | NDUFS5 | NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) | CGAP-C-2448873 CGAP-C-2448909 CGAP-C-2448910 CGAP-C-2448913 CGAP-C-2448914 CGAP-C-2448916 CGAP-C-2448917 CGAP-C-2448918 CGAP-C-2448922 |
SNPs | Gene Info |
| Hs.356554 | TRIT1 | TRNA isopentenyltransferase 1 | CGAP-C-2446891 CGAP-C-2446893 |
SNPs | Gene Info |
| Hs.524690 | PPIE | Peptidylprolyl isomerase E (cyclophilin E) | CGAP-C-2449784 |
SNPs | Gene Info |
| Hs.233458 | NFYC | Nuclear transcription factor Y, gamma | CGAP-C-2483597 |
SNPs | Gene Info |
| Hs.633186 | - | CDNA FLJ36815 fis, clone ASTRO2003740 | CGAP-C-2435848 CGAP-C-2435849 |
SNPs | Gene Info |
| Hs.571874 | SCMH1 | Sex comb on midleg homolog 1 (Drosophila) | CGAP-C-2418692 |
SNPs | Gene Info |
| Hs.370581 | CAP1 | CAP, adenylate cyclase-associated protein 1 (yeast) | CGAP-C-2471830 CGAP-C-2471831 CGAP-C-2471835 CGAP-C-2471838 CGAP-C-2471839 CGAP-C-2471841 CGAP-C-2471843 CGAP-C-2471844 CGAP-C-2471845 |
SNPs | Gene Info |
| Hs.472566 | HEYL | Hairy/enhancer-of-split related with YRPW motif-like | CGAP-C-2397475 |
SNPs | Gene Info |
| Hs.272062 | PTPRF | Protein tyrosine phosphatase, receptor type, F | CGAP-C-2466350 CGAP-C-2466351 |
SNPs | Gene Info |
| Hs.17118 | C1orf149 | Chromosome 1 open reading frame 149 | CGAP-C-2489007 CGAP-C-2489008 CGAP-C-2489009 CGAP-C-2489010 CGAP-C-2489011 |
SNPs | Gene Info |
| Hs.418012 | COL9A2 | Collagen, type IX, alpha 2 | CGAP-C-2390133 CGAP-C-2390134 CGAP-C-2390135 |
SNPs | Gene Info |
| Hs.113919 | CCDC23 | Coiled-coil domain containing 23 | CGAP-C-2408131 CGAP-C-2408132 CGAP-C-2408133 CGAP-C-2408134 CGAP-C-2408136 CGAP-C-2408137 |
SNPs | Gene Info |
| Hs.148845 | C1orf50 | Chromosome 1 open reading frame 50 | CGAP-C-2440721 |
SNPs | Gene Info |
| Hs.25597 | ELOVL1 | Elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 | CGAP-C-2459396 CGAP-C-2459397 CGAP-C-2459406 CGAP-C-2459407 |
SNPs | Gene Info |
| Hs.403972 | - | CDNA clone IMAGE:6254031 | CGAP-C-2405457 |
SNPs | Gene Info |
| Hs.205627 | RLF | Rearranged L-myc fusion | CGAP-C-2460933 |
SNPs | Gene Info |
| Hs.3873 | PPT1 | Palmitoyl-protein thioesterase 1 | CGAP-C-2433020 CGAP-C-2433021 |
SNPs | Gene Info |
| Hs.346868 | EBNA1BP2 | EBNA1 binding protein 2 | CGAP-C-2478888 CGAP-C-2478889 CGAP-C-2478897 CGAP-C-2478898 |
SNPs | Gene Info |
| Hs.78824 | TIE1 | Tyrosine kinase with immunoglobulin-like and EGF-like domains 1 | CGAP-C-2430849 |
SNPs | Gene Info |
| Hs.525091 | TOE1 | Target of EGR1, member 1 (nuclear) | CGAP-C-2472472 |
SNPs | Gene Info |
| Hs.13024 | MMACHC | Methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria | CGAP-C-2430602 |
SNPs | Gene Info |
| Hs.180909 | PRDX1 | Peroxiredoxin 1 | CGAP-C-2394778 CGAP-C-2394828 CGAP-C-2394829 CGAP-C-2394833 CGAP-C-2394834 CGAP-C-2394835 CGAP-C-2394836 CGAP-C-2394841 CGAP-C-2394846 CGAP-C-2394847 CGAP-C-2394850 CGAP-C-2394863 CGAP-C-2394872 CGAP-C-2394873 CGAP-C-2394874 CGAP-C-2394875 |
SNPs | Gene Info |
| Hs.78601 | UROD | Uroporphyrinogen decarboxylase | CGAP-C-2474132 CGAP-C-2474133 CGAP-C-2474134 |
SNPs | Gene Info |
| Hs.706748 | SLC2A1 | Solute carrier family 2 (facilitated glucose transporter), member 1 | CGAP-C-2391489 CGAP-C-2391491 CGAP-C-2391500 CGAP-C-2391503 CGAP-C-2391505 CGAP-C-2391506 CGAP-C-2391508 |
SNPs | Gene Info |
| Hs.437656 | LEPRE1 | Leucine proline-enriched proteoglycan (leprecan) 1 | CGAP-C-2395622 |
SNPs | Gene Info |
| Hs.26023 | FOXJ3 | Forkhead box J3 | CGAP-C-2453535 CGAP-C-2453536 |
SNPs | Gene Info |
| Hs.473087 | CTPS | CTP synthase | CGAP-C-2475754 CGAP-C-2475755 |
SNPs | Gene Info |
| Hs.632406 | ATP6V0B | ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b | CGAP-C-2443883 CGAP-C-2443893 CGAP-C-2443899 CGAP-C-2443900 |
SNPs | Gene Info |
| Hs.632403 | B4GALT2 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 | CGAP-C-2448234 CGAP-C-2448235 CGAP-C-2448236 |
SNPs | Gene Info |
| Hs.155983 | JMJD2A | Jumonji domain containing 2A | CGAP-C-2447929 CGAP-C-2447930 CGAP-C-2447932 |
SNPs | Gene Info |
| Hs.525084 | HECTD3 | HECT domain containing 3 | CGAP-C-2399312 CGAP-C-2399313 |
SNPs | Gene Info |
| Hs.22157 | TMEM53 | Transmembrane protein 53 | CGAP-C-2411051 |
SNPs | Gene Info |
| Hs.643560 | KIAA0467 | KIAA0467 | CGAP-C-2441772 |
SNPs | Gene Info |
| Hs.709864 | HYI | Hydroxypyruvate isomerase homolog (E. coli) | CGAP-C-2455315 |
SNPs | Gene Info |
| Hs.294009 | ZMYND12 | Zinc finger, MYND-type containing 12 | CGAP-C-2394101 CGAP-C-2394102 |
SNPs | Gene Info |
| Hs.710166 | PPCS | Phosphopantothenoylcysteine synthetase | CGAP-C-2441811 CGAP-C-2441815 |
SNPs | Gene Info |
| Hs.69360 | KIF2C | Kinesin family member 2C | CGAP-C-2428958 CGAP-C-2428961 CGAP-C-2428962 |
SNPs | Gene Info |
| Hs.238432 | GPBP1L1 | GC-rich promoter binding protein 1-like 1 | CGAP-C-2476611 CGAP-C-2476615 |
SNPs | Gene Info |
| Hs.319334 | NASP | Nuclear autoantigenic sperm protein (histone-binding) | CGAP-C-2426059 |
SNPs | Gene Info |
| Hs.132497 | PRNPIP | Prion protein interacting protein | CGAP-C-2459678 CGAP-C-2459680 CGAP-C-2459682 |
SNPs | Gene Info |
| Hs.534562 | MANEAL | Mannosidase, endo-alpha-like | CGAP-C-2466595 |
SNPs | Gene Info |
| Hs.632415 | PLK3 | Polo-like kinase 3 (Drosophila) | CGAP-C-2414836 |
SNPs | Gene Info |
| Hs.654435 | AKR1A1 | Aldo-keto reductase family 1, member A1 (aldehyde reductase) | CGAP-C-2398743 CGAP-C-2398749 |
SNPs | Gene Info |
| Hs.525134 | POMGNT1 | Protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase | CGAP-C-2426206 CGAP-C-2426207 CGAP-C-2426209 |
SNPs | Gene Info |
| Hs.655387 | PIK3R3 | Phosphoinositide-3-kinase, regulatory subunit 3 (gamma) | CGAP-C-2451254 |
SNPs | Gene Info |
| Hs.475348 | BEND5 | BEN domain containing 5 | CGAP-C-2463606 |
SNPs | Gene Info |
| Hs.144941 | LRRC41 | Leucine rich repeat containing 41 | CGAP-C-2392120 CGAP-C-2392126 |
SNPs | Gene Info |
| Hs.38972 | TSPAN1 | Tetraspanin 1 | CGAP-C-2405540 CGAP-C-2405541 CGAP-C-2405542 |
SNPs | Gene Info |
| Hs.632401 | MOBKL2C | MOB1, Mps One Binder kinase activator-like 2C (yeast) | CGAP-C-2460552 CGAP-C-2460553 |
SNPs | Gene Info |
| Hs.319481 | MAST2 | Microtubule associated serine/threonine kinase 2 | CGAP-C-2471608 CGAP-C-2471610 CGAP-C-2471612 |
SNPs | Gene Info |
| Hs.709252 | RAD54L | RAD54-like (S. cerevisiae) | CGAP-C-2403045 |
SNPs | Gene Info |
| Hs.371594 | MKNK1 | MAP kinase interacting serine/threonine kinase 1 | CGAP-C-2435301 |
SNPs | Gene Info |
| Hs.163424 | NSUN4 | Fatty acid amide hydrolase | CGAP-C-2426500 CGAP-C-2431066 CGAP-C-2431069 |
SNPs | Gene Info |
| Hs.592859 | KIAA0494 | KIAA0494 | CGAP-C-2434526 |
SNPs | Gene Info |
| Hs.443299 | C1orf223 | Chromosome 1 open reading frame 223 | CGAP-C-2456649 |
SNPs | Gene Info |
| Hs.100874 | ATPAF1 | ATP synthase mitochondrial F1 complex assembly factor 1 | CGAP-C-2418284 CGAP-C-2418286 CGAP-C-2418287 |
SNPs | Gene Info |
| Hs.439760 | CYP4X1 | Cytochrome P450, family 4, subfamily X, polypeptide 1 | CGAP-C-2428927 |
SNPs | Gene Info |
| Hs.406013 | KRT18 | Keratin 18 | CGAP-C-2421930 CGAP-C-2421931 CGAP-C-2421936 CGAP-C-2421938 CGAP-C-2421941 |
SNPs | Gene Info |
| Hs.525198 | STIL | SCL/TAL1 interrupting locus | CGAP-C-2472597 CGAP-C-2472598 |
SNPs | Gene Info |
| Hs.431099 | PDZK1IP1 | PDZK1 interacting protein 1 | CGAP-C-2456533 CGAP-C-2456535 |
SNPs | Gene Info |
| Hs.709194 | TAL1 | T-cell acute lymphocytic leukemia 1 | CGAP-C-2409012 |
SNPs | Gene Info |
| Hs.525324 | CDKN2C | Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | CGAP-C-2430564 CGAP-C-2430565 CGAP-C-2430567 |
SNPs | Gene Info |
| Comments, questions and suggestions to: Bob Clifford ( clifforr@mail.nih.gov ) |