NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
SNP linked to Gene LNX2(geneID:222484) Via Contig Annotation
rs# on all gene models to Batch Query
all rs# to file.

  Gene Model (mRNA alignment) information from genome sequence back to top
Total gene model (contig mRNA transcript): 3
mrnatranscriptproteinmrna orientationContigContig LabelList SNP
NM_153371.3minus strandNP_699202.1reverseNT_024524.13reference<- currently shown
NM_153371.3minus strandNP_699202.1reverseNW_925473.1CeleraView snp on GeneModel
NM_153371.3plus strandNP_699202.1forwardNW_001838071.2HuRefView snp on GeneModel

Include clinically associated in gene region cSNP has frequency double hit

gene model
(contig mRNA transcript):
Contig LabelContigmrnaproteinmrna orientationtranscriptsnp count
referenceNT_024524.13NM_153371.3NP_699202.1reverseminus strand4, coding

Color Legend

Region Contig
position
mRNA
pos
dbSNP rs#
cluster id
Hetero-
zygosity
Validation 3D Clinically
Associated
Function dbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
PubMed
exon_1091025672287 rs35562382 0.027 missenseAMet [M]1660
contig referenceGVal [V]1660
exon_39123185945 rs35560528 N.D. missenseTAsp [D]3212
contig referenceGGlu [E]3212
9123211919 rs34695616 0.026 missenseTSer [S]1204
contig referenceCPro [P]1204
9123229901 rs8002697 0.499byClusterbyFreqwith2hitwithHapMapFreq missenseCPro [P]1198
contig referenceTSer [S]1198
exon_19135840310start codon1

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .