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1: AT5G27120 SAR DNA-binding protein, putative [ Arabidopsis thaliana ]

GeneID: 832770 updated 21-Dec-2008

[Top][Help]Summary

Primary source
TAIR:AT5G27120
Locus tag
AT5G27120
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis

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Genomic context[Top][Help]

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[Top][Help]General gene information

GeneOntology Provided by TAIR

Function Evidence
DNA binding ISS
Process Evidence
biological_process ND
Component Evidence
nucleolus
PubMed 15496452		 IDA PubMed

mRNA Comments

NM_122594.2
Supported by ESTs: , Supported by cDNAs:

[Top][Help]General protein information

Names
SAR DNA-binding protein, putative
NP_198064.1
Identical to Probable nucleolar protein NOP5-1 (NOP5-1) [Arabidopsis Thaliana] (GB:O04658;GB:Q8H0T7;GB:Q9FPT6); similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G05060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73717.1); similar to SAR DNA-binding protein-1 [Pisum sativum] (GB:AAC16330.1); similar to matrix attachment region binding protein [Beta vulgaris] (GB:CAK22424.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOSIC (InterPro:IPR012976)

[Top][Help]NCBI Reference Sequences (RefSeq)

Genome Annotation

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mRNA and Protein(s)

  1. NM_122594.2→NP_198064.1 SAR DNA-binding protein, putative [Arabidopsis thaliana]

    UniProtKB/Swiss-Prot
    O04658
    Conserved Domains (4) summary
    COG1498
    Location:42–423
    Blast Score:817
    SIK1; Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
    pfam01798
    Location:251–399
    Blast Score:630
    Nop; Putative snoRNA binding domain
    pfam08060
    Location:159–211
    Blast Score:266
    NOSIC; NOSIC (NUC001) domain
    pfam08156
    Location:1–53
    Blast Score:176
    NOP5NT; NOP5NT (NUC127) domain