Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 7 |
| Arg | 5 |
| Asn | 2 |
| Asp | 3 |
| Cys | 1 |
| Gln | 1 |
| Glu | 2 |
| Gly | 6 |
| His | 1 |
| Ile | 4 |
| Leu | 7 |
| Lys | 2 |
| Met | 4 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| SeC(p) | 1 |
| Ser | 4 |
| Thr | 4 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 4 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig827 | 9 | 496667 ..496742 | 0..0 | 81.90 | 70.42 |
| Ala | GGC | Contig827 | 54 | 1438536..1438461 | 0..0 | 84.98 | 63.99 |
| Ala | GGC | Contig827 | 57 | 1438172..1438097 | 0..0 | 84.98 | 63.99 |
| Ala | TGC | Contig827 | 11 | 716952 ..717027 | 0..0 | 94.34 | 76.56 |
| Ala | TGC | Contig827 | 17 | 872297 ..872372 | 0..0 | 94.34 | 76.56 |
| Ala | TGC | Contig827 | 24 | 1229453..1229528 | 0..0 | 94.34 | 76.56 |
| Ala | TGC | Contig827 | 3 | 78529 ..78604 | 0..0 | 94.34 | 76.56 |
| Arg | ACG | Contig827 | 29 | 1943197..1943273 | 0..0 | 83.74 | 57.90 |
| Arg | ACG | Contig827 | 30 | 1943321..1943397 | 0..0 | 83.74 | 57.90 |
| Arg | CCG | Contig827 | 41 | 4026942..4026866 | 0..0 | 85.13 | 56.33 |
| Arg | CCT | Contig827 | 60 | 908540 ..908466 | 0..0 | 63.84 | 33.69 |
| Arg | TCT | Contig827 | 49 | 2647054..2646978 | 0..0 | 93.75 | 71.60 |
| Asn | GTT | Contig827 | 20 | 1137633..1137708 | 0..0 | 82.23 | 61.83 |
| Asn | GTT | Contig827 | 51 | 2154362..2154287 | 0..0 | 82.23 | 61.83 |
| Asp | GTC | Contig827 | 50 | 2525037..2524961 | 0..0 | 94.55 | 73.65 |
| Asp | GTC | Contig827 | 56 | 1438334..1438258 | 0..0 | 94.55 | 73.65 |
| Asp | GTC | Contig827 | 59 | 1437955..1437879 | 0..0 | 94.55 | 73.65 |
| Cys | GCA | Contig827 | 32 | 2190806..2190879 | 0..0 | 59.31 | 41.81 |
| Gln | TTG | Contig827 | 40 | 4008786..4008862 | 0..0 | 77.07 | 55.60 |
| Glu | TTC | Contig827 | 55 | 1438437..1438362 | 0..0 | 60.94 | 30.14 |
| Glu | TTC | Contig827 | 58 | 1438058..1437983 | 0..0 | 60.94 | 30.14 |
| Gly | CCC | Contig827 | 1 | 76243 ..76316 | 0..0 | 65.64 | 40.46 |
| Gly | GCC | Contig827 | 21 | 1137715..1137790 | 0..0 | 87.81 | 63.69 |
| Gly | GCC | Contig827 | 22 | 1142712..1142787 | 0..0 | 87.81 | 63.69 |
| Gly | GCC | Contig827 | 31 | 2190666..2190741 | 0..0 | 87.81 | 63.69 |
| Gly | GCC | Contig827 | 33 | 2190886..2190961 | 0..0 | 87.81 | 63.69 |
| Gly | TCC | Contig827 | 5 | 347506 ..347579 | 0..0 | 79.01 | 61.55 |
| His | GTG | Contig827 | 28 | 1848603..1848678 | 0..0 | 78.91 | 63.25 |
| Ile | GAT | Contig827 | 10 | 716864 ..716940 | 0..0 | 92.35 | 70.23 |
| Ile | GAT | Contig827 | 16 | 872209 ..872285 | 0..0 | 92.35 | 70.23 |
| Ile | GAT | Contig827 | 23 | 1229365..1229441 | 0..0 | 92.35 | 70.23 |
| Ile | GAT | Contig827 | 2 | 78441 ..78517 | 0..0 | 92.35 | 70.23 |
| Leu | CAA | Contig827 | 39 | 3527925..3528009 | 0..0 | 78.16 | 48.18 |
| Leu | CAG | Contig827 | 37 | 3211321..3211405 | 0..0 | 67.54 | 41.84 |
| Leu | CAG | Contig827 | 38 | 3211576..3211660 | 0..0 | 71.14 | 42.45 |
| Leu | GAG | Contig827 | 19 | 1029310..1029394 | 0..0 | 63.56 | 32.22 |
| Leu | GAG | Contig827 | 43 | 3503909..3503826 | 0..0 | 46.60 | 15.66 |
| Leu | TAA | Contig827 | 34 | 2191033..2191118 | 0..0 | 74.51 | 42.54 |
| Leu | TAG | Contig827 | 44 | 2897985..2897901 | 0..0 | 78.45 | 54.31 |
| Lys | CTT | Contig827 | 63 | 201229 ..201154 | 0..0 | 95.78 | 70.74 |
| Lys | TTT | Contig827 | 62 | 201323 ..201248 | 0..0 | 94.95 | 70.35 |
| Met | CAT | Contig827 | 15 | 870227 ..870302 | 0..0 | 90.87 | 64.80 |
| Met | CAT | Contig827 | 42 | 3778324..3778248 | 0..0 | 85.21 | 63.81 |
| Met | CAT | Contig827 | 61 | 586113 ..586037 | 0..0 | 97.03 | 73.75 |
| Met | CAT | Contig827 | 64 | 201061 ..200986 | 0..0 | 90.87 | 64.80 |
| Phe | GAA | Contig827 | 8 | 475156 ..475231 | 0..0 | 89.90 | 67.14 |
| Pro | CGG | Contig827 | 12 | 724805 ..724881 | 0..0 | 81.96 | 60.56 |
| Pro | GGG | Contig827 | 46 | 2867267..2867191 | 0..0 | 81.03 | 63.39 |
| Pro | TGG | Contig827 | 48 | 2647154..2647078 | 0..0 | 86.99 | 68.03 |
| SeC(p) | TCA | Contig827 | 52 | 1945019..1944928 | 0..0 | 37.41 | 0.00 |
| Ser | CGA | Contig827 | 25 | 1413291..1413378 | 0..0 | 72.12 | 39.72 |
| Ser | GCT | Contig827 | 47 | 2711749..2711657 | 0..0 | 73.77 | 44.58 |
| Ser | GGA | Contig827 | 27 | 1763155..1763245 | 0..0 | 69.33 | 53.60 |
| Ser | TGA | Contig827 | 18 | 925627 ..925714 | 0..0 | 73.71 | 41.37 |
| Thr | CGT | Contig827 | 13 | 778283 ..778358 | 0..0 | 88.73 | 72.32 |
| Thr | GGT | Contig827 | 36 | 2986099..2986173 | 0..0 | 90.12 | 63.72 |
| Thr | GGT | Contig827 | 6 | 347610 ..347684 | 0..0 | 90.12 | 63.72 |
| Thr | TGT | Contig827 | 14 | 855858 ..855931 | 0..0 | 56.29 | 34.30 |
| Trp | CCA | Contig827 | 7 | 348992 ..349067 | 0..0 | 89.68 | 70.28 |
| Tyr | GTA | Contig827 | 4 | 347382 ..347466 | 0..0 | 71.96 | 41.78 |
| Val | CAC | Contig827 | 26 | 1440091..1440165 | 0..0 | 91.15 | 67.86 |
| Val | GAC | Contig827 | 45 | 2874857..2874781 | 0..0 | 91.24 | 64.55 |
| Val | TAC | Contig827 | 35 | 2954257..2954332 | 0..0 | 90.52 | 70.66 |
| Val | TAC | Contig827 | 53 | 1842196..1842121 | 0..0 | 89.65 | 69.11 |
tRNA Models
Contig827.trna1 (76243-76316) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (76275-76277) Score: 65.64
HMM Sc=40.46 Sec struct Sc=25.18
* | * | * | * | * | * | * |
Seq: GCGGGCGTCGTATAATGGTAATACCCTTGCTTCCCAAGCAAGAGcCGACGGTTCGATTCCGTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig827.trna2 (78441-78517) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (78475-78477) Score: 92.35
HMM Sc=70.23 Sec struct Sc=22.12
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGATTCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna3 (78529-78604) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (78562-78564) Score: 94.34
HMM Sc=76.56 Sec struct Sc=17.78
* | * | * | * | * | * | * | *
Seq: GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCAACGGTTCGATCCCGTTATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna4 (347382-347466) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (347416-347418) Score: 71.96
HMM Sc=41.78 Sec struct Sc=30.18
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTACCCAAGCGGTcaACGGGAACAGACTGTAAATCTGTCGGCTCTGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>..<.<...>>>>>.......<<<<<<<<<<<<....
Contig827.trna5 (347506-347579) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (347538-347540) Score: 79.01
HMM Sc=61.55 Sec struct Sc=17.46
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCTGAAGCCTTCCAAGCTTAAGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna6 (347610-347684) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (347642-347644) Score: 90.12
HMM Sc=63.72 Sec struct Sc=26.40
* | * | * | * | * | * | * |
Seq: GCCCATGTGGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGGCAGTTCGATCCTGCCCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna7 (348992-349067) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (349025-349027) Score: 89.68
HMM Sc=70.28 Sec struct Sc=19.40
* | * | * | * | * | * | * | *
Seq: AGGGGTGTAGCTCAATTGGTAGAGCAACGGTTTCCAAAACCGTAGGtCGGGGGTTCGATTCCCTCCGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna8 (475156-475231) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (475189-475191) Score: 89.90
HMM Sc=67.14 Sec struct Sc=22.76
* | * | * | * | * | * | * | *
Seq: GGCCAATTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGTGtCCGTGGTTCGATTCCGCGATTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna9 (496667-496742) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (496700-496702) Score: 81.90
HMM Sc=70.42 Sec struct Sc=11.48
* | * | * | * | * | * | * | *
Seq: GGGGGGGTAGCTCAGCTGGGAGAGCGCCGCGTTCGCAATGCGGAGGtCGGGAGTTCGATCCTCCTCCTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna10 (716864-716940) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (716898-716900) Score: 92.35
HMM Sc=70.23 Sec struct Sc=22.12
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGATTCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna11 (716952-717027) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (716985-716987) Score: 94.34
HMM Sc=76.56 Sec struct Sc=17.78
* | * | * | * | * | * | * | *
Seq: GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCAACGGTTCGATCCCGTTATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna12 (724805-724881) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (724839-724841) Score: 81.96
HMM Sc=60.56 Sec struct Sc=21.40
* | * | * | * | * | * | * | *
Seq: CGGAGTGTAGCTCAGCCtGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAAGTTCGAATCCTGTCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....
Contig827.trna13 (778283-778358) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (778316-778318) Score: 88.73
HMM Sc=72.32 Sec struct Sc=16.41
* | * | * | * | * | * | * | *
Seq: GCCGCTTTAGCTCAGTTGGTAGAGCAGTTCATTCGTAATGAAAAGGtCGCCAGTTCGATTCCGGCAAGCGGCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>.>.......<.<<<<<<<<<<....
Contig827.trna14 (855858-855931) Length: 74 bp
Type: Thr Anticodon: TGT at 33-35 (855890-855892) Score: 56.29
HMM Sc=34.30 Sec struct Sc=21.99
* | * | * | * | * | * | * |
Seq: GCCCCCGTAGCATGAAGGTCGTGCAGTTGATTTGTAATCATCAGGTAGCGGTTCGATTCCGTTCGGGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>.>>>.......<<<.<....>>>>>.......<<<<<<<<<<<<....
Contig827.trna15 (870227-870302) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (870260-870262) Score: 90.87
HMM Sc=64.80 Sec struct Sc=26.07
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTTGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAGTCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig827.trna16 (872209-872285) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (872243-872245) Score: 92.35
HMM Sc=70.23 Sec struct Sc=22.12
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGATTCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna17 (872297-872372) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (872330-872332) Score: 94.34
HMM Sc=76.56 Sec struct Sc=17.78
* | * | * | * | * | * | * | *
Seq: GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCAACGGTTCGATCCCGTTATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna18 (925627-925714) Length: 88 bp
Type: Ser Anticodon: TGA at 35-37 (925661-925663) Score: 73.71
HMM Sc=41.37 Sec struct Sc=32.34
* | * | * | * | * | * | * | * | *
Seq: GGGTCTGTGGCAGAGCGGTtgAATGCACCGGTCTTGAAAACCGGCGTGGGGAAACCCATCGTGAGTTCGAATCTCACCGGACCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna19 (1029310-1029394) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (1029344-1029346) Score: 63.56
HMM Sc=32.22 Sec struct Sc=31.34
* | * | * | * | * | * | * | * |
Seq: GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGCAAGCTGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna20 (1137633-1137708) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1137666-1137668) Score: 82.23
HMM Sc=61.83 Sec struct Sc=20.40
* | * | * | * | * | * | * | *
Seq: TCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig827.trna21 (1137715-1137790) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (1137748-1137750) Score: 87.81
HMM Sc=63.69 Sec struct Sc=24.12
* | * | * | * | * | * | * | *
Seq: GCGGCAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGAGAGTTCGAGACTCTTCTGCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna22 (1142712-1142787) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (1142745-1142747) Score: 87.81
HMM Sc=63.69 Sec struct Sc=24.12
* | * | * | * | * | * | * | *
Seq: GCGGCAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGAGAGTTCGAGACTCTTCTGCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna23 (1229365-1229441) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1229399-1229401) Score: 92.35
HMM Sc=70.23 Sec struct Sc=22.12
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGATTCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna24 (1229453-1229528) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1229486-1229488) Score: 94.34
HMM Sc=76.56 Sec struct Sc=17.78
* | * | * | * | * | * | * | *
Seq: GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCAACGGTTCGATCCCGTTATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna25 (1413291-1413378) Length: 88 bp
Type: Ser Anticodon: CGA at 35-37 (1413325-1413327) Score: 72.12
HMM Sc=39.72 Sec struct Sc=32.40
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGTACCTGACTCGAAATCAGGCGTACTGCAAGGTACCGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig827.trna26 (1440091-1440165) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1440123-1440125) Score: 91.15
HMM Sc=67.86 Sec struct Sc=23.29
* | * | * | * | * | * | * |
Seq: GGGCGGTTAGCTCAGCGGTAGAGCACTGCCTTCACACGGCAGGGGtCACTGGTTCGATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna27 (1763155-1763245) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (1763189-1763191) Score: 69.33
HMM Sc=53.60 Sec struct Sc=15.73
* | * | * | * | * | * | * | * | * |
Seq: GGAGGGGTGGATGAGTGGTttAAGTCGCACGCCTGGAAAGCGTGTGTAGGGTAATCCCCTACCGCGGGTTCGAATCCCGCCTCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig827.trna28 (1848603-1848678) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (1848636-1848638) Score: 78.91
HMM Sc=63.25 Sec struct Sc=15.66
* | * | * | * | * | * | * | *
Seq: GCGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTTGtCGTGGGTTCGAGCCCCATCAGTCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna29 (1943197-1943273) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1943231-1943233) Score: 83.74
HMM Sc=57.90 Sec struct Sc=25.84
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGGGCGTTCGAATCGCTCCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna30 (1943321-1943397) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1943355-1943357) Score: 83.74
HMM Sc=57.90 Sec struct Sc=25.84
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGGGCGTTCGAATCGCTCCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna31 (2190666-2190741) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (2190699-2190701) Score: 87.81
HMM Sc=63.69 Sec struct Sc=24.12
* | * | * | * | * | * | * | *
Seq: GCGGCAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGAGAGTTCGAGACTCTTCTGCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna32 (2190806-2190879) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2190838-2190840) Score: 59.31
HMM Sc=41.81 Sec struct Sc=17.50
* | * | * | * | * | * | * |
Seq: GGCGCGGTAGCAAAGCGGTTATGCACCGGATTGCAAATCCGTGTAGGTCGGTTCGACTCCGGCCCGCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna33 (2190886-2190961) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (2190919-2190921) Score: 87.81
HMM Sc=63.69 Sec struct Sc=24.12
* | * | * | * | * | * | * | *
Seq: GCGGCAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGAGAGTTCGAGACTCTTCTGCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna34 (2191033-2191118) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (2191067-2191069) Score: 74.51
HMM Sc=42.54 Sec struct Sc=31.97
* | * | * | * | * | * | * | * | *
Seq: GCCCGGGTGGTGAAATTGGTaGACACAAGAGACTTAAAATCTCTCGCTCTTCGAGTGTACGGGTTCGATTCCCGTCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna35 (2954257-2954332) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (2954290-2954292) Score: 90.52
HMM Sc=70.66 Sec struct Sc=19.86
* | * | * | * | * | * | * | *
Seq: GCGTTCTTAGCTCAGTTGGTAGAGCGTCTGCCTTACACGCAGAATGtCGGCGGTTCGAGCCCGTCAGGACGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna36 (2986099-2986173) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (2986131-2986133) Score: 90.12
HMM Sc=63.72 Sec struct Sc=26.40
* | * | * | * | * | * | * |
Seq: GCCCATGTGGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGGCAGTTCGATCCTGCCCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna37 (3211321-3211405) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (3211355-3211357) Score: 67.54
HMM Sc=41.84 Sec struct Sc=25.70
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGGAATTGGTaGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGGGGGTTCGAGTCCCTTTCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna38 (3211576-3211660) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (3211610-3211612) Score: 71.14
HMM Sc=42.45 Sec struct Sc=28.69
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGGAATTGGTaGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGGGGGTTCGAGTCCCTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna39 (3527925-3528009) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (3527959-3527961) Score: 78.16
HMM Sc=48.18 Sec struct Sc=29.98
* | * | * | * | * | * | * | * |
Seq: GCCCCGGTGGCGGAATCGGTaGACGCAGCGGATTCAAAATCCGCCGCCGAAAGGTGTGCCAGTTCGAGTCTGGCCCGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna40 (4008786-4008862) Length: 77 bp
Type: Gln Anticodon: TTG at 35-37 (4008820-4008822) Score: 77.07
HMM Sc=55.60 Sec struct Sc=21.47
* | * | * | * | * | * | * | *
Seq: TGGGGAGTCGCCAAGTTGGTcAAGGCACCGGATTTTGATTCCGGCATtCGAAGGTTCGAATCCTTCTTCCCCAGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna41 (4026942-4026866) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (4026908-4026906) Score: 85.13
HMM Sc=56.33 Sec struct Sc=28.80
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGTACTGCCCTCCGAAGGCAGGGGtCACTGATTCGAATTCAGTCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna42 (3778324-3778248) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3778290-3778288) Score: 85.21
HMM Sc=63.81 Sec struct Sc=21.40
* | * | * | * | * | * | * | *
Seq: GGTGATGTAGCTCAGACGGTtAGAGCGATGGATTCATAACCCATAGGtCGGCAGTTCGATTCTGCCCATCACCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna43 (3503909-3503826) Length: 84 bp
Type: Leu Anticodon: GAG at 35-37 (3503875-3503873) Score: 46.60
HMM Sc=15.66 Sec struct Sc=30.94
* | * | * | * | * | * | * | * |
Seq: GCCTTGGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGCAAGCTGTGCGAGTTCGAGTCTCGCCCAAGCACCA
Str: >>.>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<....
Contig827.trna44 (2897985-2897901) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2897951-2897949) Score: 78.45
HMM Sc=54.31 Sec struct Sc=24.14
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGAAAGGTGTGGGGGTTCGAGTCCCTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig827.trna45 (2874857-2874781) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (2874823-2874821) Score: 91.24
HMM Sc=64.55 Sec struct Sc=26.69
* | * | * | * | * | * | * | *
Seq: AGGCGGTTAGCTCAGTTGGTtAGAGCGCCACGTTGACATCGTGGAGGtCGTTGGTTCGATTCCAATACCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna46 (2867267-2867191) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (2867233-2867231) Score: 81.03
HMM Sc=63.39 Sec struct Sc=17.64
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGtCGCGAGTTCGAATCCCGCCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....
Contig827.trna47 (2711749-2711657) Length: 93 bp
Type: Ser Anticodon: GCT at 35-37 (2711715-2711713) Score: 73.77
HMM Sc=44.58 Sec struct Sc=29.19
* | * | * | * | * | * | * | * | * |
Seq: GGAGACGTGGCCGAGAGGTcgAAGGCACTCCCCTGCTAAGGGAGCATGCGGGCAAAaCCTGCATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig827.trna48 (2647154-2647078) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (2647120-2647118) Score: 86.99
HMM Sc=68.03 Sec struct Sc=18.96
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGTCtGGTAGCGCATCTGCTTTGGGAGCAGAGGGtCGTGAGTTCGAATCCCACCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....
Contig827.trna49 (2647054-2646978) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2647020-2647018) Score: 93.75
HMM Sc=71.60 Sec struct Sc=22.15
* | * | * | * | * | * | * | *
Seq: GTGCCCGTAGCTCAACTGGAtAGAGCAGCTGCCTTCTAAGCAGCAGGtCGGGGGTTCGAGTCCCTCCGGGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna50 (2525037-2524961) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2525003-2525001) Score: 94.55
HMM Sc=73.65 Sec struct Sc=20.90
* | * | * | * | * | * | * | *
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna51 (2154362-2154287) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (2154329-2154327) Score: 82.23
HMM Sc=61.83 Sec struct Sc=20.40
* | * | * | * | * | * | * | *
Seq: TCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig827.trna52 (1945019-1944928) Length: 92 bp
Type: SeC(p) Anticodon: TCA at 35-37 (1944985-1944983) Score: 37.41
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | * |
Seq: GGAAGAGATCGtTCCCCGGTGGGACGGCCGGTCTTCAAAACCGGCAGGGCCTGtCAAACAGGCTTGGGTAGGTTCGACTCCTGCTCTCTTCC
Str: >>>>>>>..>>.>>>>....<<<<<<>>>>>>.......<<<<<<.>>>>>>>.....<<<<<<<..>>>>>.......<<<<<.<<<<<<<
Contig827.trna53 (1842196-1842121) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (1842163-1842161) Score: 89.65
HMM Sc=69.11 Sec struct Sc=20.54
* | * | * | * | * | * | * | *
Seq: GGGTGCTTAGCTCAGTTGGCAGAGCGTCTGCCTTACACGCAGAATGtCGGCGGTTCGACCCCGTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna54 (1438536-1438461) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1438503-1438501) Score: 84.98
HMM Sc=63.99 Sec struct Sc=20.99
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCCGCGGTTCGATCCCGCGTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna55 (1438437-1438362) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1438403-1438401) Score: 60.94
HMM Sc=30.14 Sec struct Sc=30.80
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGAGGCctAGGACACCGCCCTTTCACGGCGGTAACCGGGGTTCGAATCCCCGTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig827.trna56 (1438334-1438258) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (1438300-1438298) Score: 94.55
HMM Sc=73.65 Sec struct Sc=20.90
* | * | * | * | * | * | * | *
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna57 (1438172-1438097) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1438139-1438137) Score: 84.98
HMM Sc=63.99 Sec struct Sc=20.99
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCCGCGGTTCGATCCCGCGTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna58 (1438058-1437983) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1438024-1438022) Score: 60.94
HMM Sc=30.14 Sec struct Sc=30.80
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGAGGCctAGGACACCGCCCTTTCACGGCGGTAACCGGGGTTCGAATCCCCGTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig827.trna59 (1437955-1437879) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (1437921-1437919) Score: 94.55
HMM Sc=73.65 Sec struct Sc=20.90
* | * | * | * | * | * | * | *
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna60 (908540-908466) Length: 75 bp
Type: Arg Anticodon: CCT at 34-36 (908507-908505) Score: 63.84
HMM Sc=33.69 Sec struct Sc=30.15
* | * | * | * | * | * | * |
Seq: GTCTCCATAGTTAAATGGAtATAACGGCTCCCTCCTAAGGAGCAGtTCCTGGTTCGATTCCGGGTGGGGACGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig827.trna61 (586113-586037) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (586079-586077) Score: 97.03
HMM Sc=73.75 Sec struct Sc=23.28
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAGTTGGTtAGAGCAGAGGACTCATAATCCTTTGGtCCACGGTTCAAGTCCGTGCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna62 (201323-201248) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (201290-201288) Score: 94.95
HMM Sc=70.35 Sec struct Sc=24.60
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTGGtCCCGAGTTCGAATCTCGGCCGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna63 (201229-201154) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (201196-201194) Score: 95.78
HMM Sc=70.74 Sec struct Sc=25.04
* | * | * | * | * | * | * | *
Seq: GGGGCGCTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAGGtCGACAGTTCGAATCTGTCGCGCCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig827.trna64 (201061-200986) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (201028-201026) Score: 90.87
HMM Sc=64.80 Sec struct Sc=26.07
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTTGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAGTCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
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