Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 6 |
| Arg | 6 |
| Asn | 2 |
| Asp | 2 |
| Cys | 1 |
| Gln | 2 |
| Glu | 3 |
| Gly | 5 |
| His | 1 |
| Ile | 4 |
| Leu | 7 |
| Lys | 3 |
| Met | 5 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| SeC(p) | 1 |
| Ser | 5 |
| Thr | 4 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | GGC | Contig143 | 30 | 3713115..3713040 | 0..0 | 85.97 | 73.58 |
| Ala | GGC | Contig143 | 35 | 3405274..3405199 | 0..0 | 86.96 | 67.19 |
| Ala | TGC | Contig143 | 2 | 71551 ..71626 | 0..0 | 94.01 | 81.78 |
| Ala | TGC | Contig143 | 33 | 3537062..3536987 | 0..0 | 94.01 | 81.78 |
| Ala | TGC | Contig143 | 43 | 2607490..2607415 | 0..0 | 94.01 | 81.78 |
| Ala | TGC | Contig143 | 7 | 1311142..1311217 | 0..0 | 94.01 | 81.78 |
| Arg | ACG | Contig143 | 48 | 1840384..1840308 | 0..0 | 92.28 | 73.13 |
| Arg | ACG | Contig143 | 49 | 1840285..1840209 | 0..0 | 92.28 | 73.13 |
| Arg | ACG | Contig143 | 50 | 1840181..1840105 | 0..0 | 92.28 | 73.13 |
| Arg | CCG | Contig143 | 66 | 137107 ..137031 | 0..0 | 88.41 | 63.73 |
| Arg | CCT | Contig143 | 11 | 2047102..2047178 | 0..0 | 89.64 | 67.14 |
| Arg | TCT | Contig143 | 36 | 3048476..3048400 | 0..0 | 89.44 | 71.98 |
| Asn | GTT | Contig143 | 54 | 1383209..1383134 | 0..0 | 79.55 | 56.48 |
| Asn | GTT | Contig143 | 55 | 1382598..1382523 | 0..0 | 79.55 | 56.48 |
| Asp | GTC | Contig143 | 37 | 3025378..3025302 | 0..0 | 90.01 | 70.02 |
| Asp | GTC | Contig143 | 39 | 3012197..3012121 | 0..0 | 90.01 | 70.02 |
| Cys | GCA | Contig143 | 15 | 2366060..2366134 | 0..0 | 74.19 | 38.98 |
| Gln | CTG | Contig143 | 62 | 640811 ..640737 | 0..0 | 63.09 | 39.81 |
| Gln | TTG | Contig143 | 12 | 2175143..2175218 | 0..0 | 72.00 | 51.66 |
| Glu | TTC | Contig143 | 25 | 3128059..3128136 | 0..0 | 67.57 | 41.21 |
| Glu | TTC | Contig143 | 4 | 703376 ..703453 | 0..0 | 64.88 | 38.52 |
| Glu | TTC | Contig143 | 63 | 640722 ..640645 | 0..0 | 67.57 | 41.21 |
| Gly | CCC | Contig143 | 17 | 2366288..2366363 | 0..0 | 92.39 | 68.68 |
| Gly | GCC | Contig143 | 14 | 2365963..2366037 | 0..0 | 85.03 | 59.38 |
| Gly | GCC | Contig143 | 16 | 2366142..2366216 | 0..0 | 85.03 | 59.38 |
| Gly | GCC | Contig143 | 18 | 2366407..2366481 | 0..0 | 85.03 | 59.38 |
| Gly | TCC | Contig143 | 22 | 2969352..2969428 | 0..0 | 93.14 | 70.93 |
| His | GTG | Contig143 | 64 | 560373 ..560298 | 0..0 | 84.84 | 62.16 |
| Ile | GAT | Contig143 | 1 | 71460 ..71536 | 0..0 | 99.17 | 75.58 |
| Ile | GAT | Contig143 | 32 | 3537153..3537077 | 0..0 | 99.17 | 75.58 |
| Ile | GAT | Contig143 | 42 | 2607581..2607505 | 0..0 | 99.17 | 75.58 |
| Ile | GAT | Contig143 | 6 | 1311051..1311127 | 0..0 | 99.17 | 75.58 |
| Leu | CAA | Contig143 | 19 | 2509400..2509486 | 0..0 | 74.56 | 43.75 |
| Leu | CAG | Contig143 | 28 | 3465584..3465670 | 0..0 | 65.11 | 33.47 |
| Leu | CAG | Contig143 | 61 | 903983 ..903897 | 0..0 | 61.00 | 34.07 |
| Leu | GAG | Contig143 | 45 | 2031984..2031899 | 0..0 | 59.85 | 33.89 |
| Leu | GAG | Contig143 | 60 | 917678 ..917593 | 0..0 | 59.85 | 33.89 |
| Leu | TAA | Contig143 | 34 | 3531997..3531911 | 0..0 | 68.33 | 37.94 |
| Leu | TAG | Contig143 | 44 | 2265146..2265062 | 0..0 | 72.42 | 43.89 |
| Lys | CTT | Contig143 | 56 | 1319680..1319605 | 0..0 | 90.63 | 72.39 |
| Lys | CTT | Contig143 | 8 | 1321766..1321841 | 0..0 | 90.63 | 72.39 |
| Lys | TTT | Contig143 | 65 | 179836 ..179761 | 0..0 | 84.25 | 64.79 |
| Met | CAT | Contig143 | 13 | 2197430..2197505 | 0..0 | 89.38 | 73.97 |
| Met | CAT | Contig143 | 31 | 3576057..3575981 | 0..0 | 85.27 | 62.54 |
| Met | CAT | Contig143 | 46 | 1997294..1997218 | 0..0 | 89.22 | 67.54 |
| Met | CAT | Contig143 | 47 | 1997078..1997002 | 0..0 | 89.22 | 67.54 |
| Met | CAT | Contig143 | 9 | 1626556..1626632 | 0..0 | 81.76 | 59.02 |
| Phe | GAA | Contig143 | 29 | 3514674..3514749 | 0..0 | 90.30 | 64.09 |
| Pro | CGG | Contig143 | 52 | 1594652..1594575 | 0..0 | 84.91 | 60.48 |
| Pro | GGG | Contig143 | 26 | 3247201..3247277 | 0..0 | 83.62 | 60.82 |
| Pro | TGG | Contig143 | 51 | 1722208..1722132 | 0..0 | 90.12 | 63.26 |
| SeC(p) | TCA | Contig143 | 53 | 1531804..1531715 | 0..0 | 65.06 | 0.00 |
| Ser | CGA | Contig143 | 10 | 1787650..1787745 | 0..0 | 75.14 | 44.62 |
| Ser | GCT | Contig143 | 57 | 1109721..1109628 | 0..0 | 73.53 | 35.94 |
| Ser | GGA | Contig143 | 58 | 1028620..1028529 | 0..0 | 65.11 | 29.50 |
| Ser | GGA | Contig143 | 59 | 1028258..1028167 | 0..0 | 65.11 | 29.50 |
| Ser | TGA | Contig143 | 40 | 2908486..2908395 | 0..0 | 67.13 | 32.54 |
| Thr | CGT | Contig143 | 5 | 1248668..1248743 | 0..0 | 89.43 | 61.46 |
| Thr | GGT | Contig143 | 23 | 2969465..2969540 | 0..0 | 86.84 | 59.07 |
| Thr | GGT | Contig143 | 27 | 3247482..3247557 | 0..0 | 83.51 | 52.74 |
| Thr | TGT | Contig143 | 20 | 2969133..2969208 | 0..0 | 85.30 | 69.17 |
| Trp | CCA | Contig143 | 24 | 2970953..2971029 | 0..0 | 73.83 | 50.84 |
| Tyr | GTA | Contig143 | 21 | 2969214..2969299 | 0..0 | 72.62 | 41.72 |
| Val | CAC | Contig143 | 38 | 3012278..3012203 | 0..0 | 91.35 | 68.45 |
| Val | GAC | Contig143 | 41 | 2657309..2657235 | 0..0 | 79.45 | 55.80 |
| Val | TAC | Contig143 | 3 | 677828 ..677903 | 0..0 | 97.97 | 77.63 |
tRNA Models
Contig143.trna1 (71460-71536) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (71494-71496) Score: 99.17
HMM Sc=75.58 Sec struct Sc=23.59
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna2 (71551-71626) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (71584-71586) Score: 94.01
HMM Sc=81.78 Sec struct Sc=12.23
* | * | * | * | * | * | * | *
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATCGGTTCAAATCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig143.trna3 (677828-677903) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (677861-677863) Score: 97.97
HMM Sc=77.63 Sec struct Sc=20.34
* | * | * | * | * | * | * | *
Seq: GGGCGGTTAGCTCAGCTGGGAGAGCATCGGCCTTACAAGCCGAGGGtCACAGGTTCGAGCCCTGTACCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna4 (703376-703453) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (703412-703414) Score: 64.88
HMM Sc=38.52 Sec struct Sc=26.36
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGCCtGGCccAGGACACCTGCCTTTCACGCAGGCGACAGGGGTTCAAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig143.trna5 (1248668-1248743) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (1248701-1248703) Score: 89.43
HMM Sc=61.46 Sec struct Sc=27.97
* | * | * | * | * | * | * | *
Seq: GCCAGCATAGCTCAGTTGGTAGAGCAGCTGATTCGTAATCAGCAGGtCAACAGTTCAATTCTGTTTGCTGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna6 (1311051-1311127) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1311085-1311087) Score: 99.17
HMM Sc=75.58 Sec struct Sc=23.59
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna7 (1311142-1311217) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1311175-1311177) Score: 94.01
HMM Sc=81.78 Sec struct Sc=12.23
* | * | * | * | * | * | * | *
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATCGGTTCAAATCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig143.trna8 (1321766-1321841) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (1321799-1321801) Score: 90.63
HMM Sc=72.39 Sec struct Sc=18.24
* | * | * | * | * | * | * | *
Seq: GGGTCATTAGCTCAATTGGTAGAGCAGCTGACTCTTAATCAGTTGGtTCGGGGTTCGAGTCCCTGATGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna9 (1626556-1626632) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1626590-1626592) Score: 81.76
HMM Sc=59.02 Sec struct Sc=22.74
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCAcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig143.trna10 (1787650-1787745) Length: 96 bp
Type: Ser Anticodon: CGA at 38-40 (1787687-1787689) Score: 75.14
HMM Sc=44.62 Sec struct Sc=30.52
* | * | * | * | * | * | * | * | * | *
Seq: GGAGAGGTAGCGAAGTCcGGCcgtAACGCGCTCGACTCGAAATCGAGTTACGGGTTAATaGCCCGTACGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig143.trna11 (2047102-2047178) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (2047136-2047138) Score: 89.64
HMM Sc=67.14 Sec struct Sc=22.50
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGTCGGAtAGAGCGACGGCCTCCTAAGCCGTAGGcCACAGGTTCGATTCCTGTCGAGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna12 (2175143-2175218) Length: 76 bp
Type: Gln Anticodon: TTG at 34-36 (2175176-2175178) Score: 72.00
HMM Sc=51.66 Sec struct Sc=20.34
* | * | * | * | * | * | * | *
Seq: AGGGGTGTCGCCAAGTTGGTAAGGCAACGGGTTTTGGTCCCGTCATtCGAGGGTTCAAGTCCTTCCGCCCCTGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna13 (2197430-2197505) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (2197463-2197465) Score: 89.38
HMM Sc=73.97 Sec struct Sc=15.41
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGTTGGCAGAGCCTCCGGCTCATAACCGGCAGGtCGCAGGTTCAAATCCTGCTGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig143.trna14 (2365963-2366037) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2365995-2365997) Score: 85.03
HMM Sc=59.38 Sec struct Sc=25.65
* | * | * | * | * | * | * |
Seq: GCGGGAATAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGAAGtCGCGGGTTCAAATCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna15 (2366060-2366134) Length: 75 bp
Type: Cys Anticodon: GCA at 33-35 (2366092-2366094) Score: 74.19
HMM Sc=38.98 Sec struct Sc=35.21
* | * | * | * | * | * | * |
Seq: GGCGGCATAGCCAAGCGGTAAGGCAGAGGTCTGCAAAACCTCCATtCTCCAGTTCAAATCTGGATGCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna16 (2366142-2366216) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2366174-2366176) Score: 85.03
HMM Sc=59.38 Sec struct Sc=25.65
* | * | * | * | * | * | * |
Seq: GCGGGAATAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGAAGtCGCGGGTTCAAATCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna17 (2366288-2366363) Length: 76 bp
Type: Gly Anticodon: CCC at 34-36 (2366321-2366323) Score: 92.39
HMM Sc=68.68 Sec struct Sc=23.71
* | * | * | * | * | * | * | *
Seq: GCGGGAATAACTCAGTTGGTAGAGTGTCAGCTTCCCAAGCTGAAGGtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna18 (2366407-2366481) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2366439-2366441) Score: 85.03
HMM Sc=59.38 Sec struct Sc=25.65
* | * | * | * | * | * | * |
Seq: GCGGGAATAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGAAGtCGCGGGTTCAAATCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna19 (2509400-2509486) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (2509434-2509436) Score: 74.56
HMM Sc=43.75 Sec struct Sc=30.81
* | * | * | * | * | * | * | * | *
Seq: GCCGGGATGGTGGAATTGGTaGACGCAGCGGACTCAAAATCCGCCGGTGGCAACACCtTGCGAGTTCGAGTCTCGCTCCCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig143.trna20 (2969133-2969208) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (2969166-2969168) Score: 85.30
HMM Sc=69.17 Sec struct Sc=16.13
* | * | * | * | * | * | * | *
Seq: GCTGGCGTAGCTCAACTGGCAGAGCAGCTGATTTGTAATCAGCCGGtTGCGGGTTCGAGTCCCATCGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig143.trna21 (2969214-2969299) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (2969248-2969250) Score: 72.62
HMM Sc=41.72 Sec struct Sc=30.90
* | * | * | * | * | * | * | * | *
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGAACAGACTGTAAATCTGTCGTCGGAAGACTtCGGAGGTTCAAATCCTCCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig143.trna22 (2969352-2969428) Length: 77 bp
Type: Gly Anticodon: TCC at 35-37 (2969386-2969388) Score: 93.14
HMM Sc=70.93 Sec struct Sc=22.21
* | * | * | * | * | * | * | *
Seq: GCGGGAATAGCTCAATTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtTGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna23 (2969465-2969540) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (2969498-2969500) Score: 86.84
HMM Sc=59.07 Sec struct Sc=27.77
* | * | * | * | * | * | * | *
Seq: GCCCACGTAGCTCAGTAGGTAGAGCGCGTCCTTGGTAAGGACGAGGtCAGCAGTTCAATTCTGCTCGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna24 (2970953-2971029) Length: 77 bp
Type: Trp Anticodon: CCA at 35-37 (2970987-2970989) Score: 73.83
HMM Sc=50.84 Sec struct Sc=22.99
* | * | * | * | * | * | * | *
Seq: AGGGCAGTAGCTCCAACGGCtAGAGCGGCGGTCTCCAAAACCGCATGtTGGGGGTTCGAATCCCTCCTGCCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna25 (3128059-3128136) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (3128095-3128097) Score: 67.57
HMM Sc=41.21 Sec struct Sc=26.36
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGCCtGGCctAGGACACCTGCCTTTCACGCAGGCGACAGGGGTTCAAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig143.trna26 (3247201-3247277) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (3247235-3247237) Score: 83.62
HMM Sc=60.82 Sec struct Sc=22.80
* | * | * | * | * | * | * | *
Seq: CGGGATGTAGCGCAGTTtGGGAGCGCACTTGAATGGGGTTCAAGGGGtCGAAGGTTCAAATCCTTTCATCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna27 (3247482-3247557) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (3247515-3247517) Score: 83.51
HMM Sc=52.74 Sec struct Sc=30.77
* | * | * | * | * | * | * | *
Seq: GCTCTCATAGCTCAGTAGGTAGAGCGCATCCTTGGTAAGGATGAGGtCAGCAGTTCAATTCTGCTTGAGAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna28 (3465584-3465670) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (3465618-3465620) Score: 65.11
HMM Sc=33.47 Sec struct Sc=31.64
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCTAGGTTCAGGGTCTAGTGGGGGTTCCCCCGTGGGAGTTCGAGTCTCCCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig143.trna29 (3514674-3514749) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3514707-3514709) Score: 90.30
HMM Sc=64.09 Sec struct Sc=26.21
* | * | * | * | * | * | * | *
Seq: GCCGAGATAGCTCAGTTGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGGAGTTCAATTCTCTCTCTCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna30 (3713115-3713040) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (3713082-3713080) Score: 85.97
HMM Sc=73.58 Sec struct Sc=12.39
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCGTGGGTTCAATTCCCTCCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig143.trna31 (3576057-3575981) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3576023-3576021) Score: 85.27
HMM Sc=62.54 Sec struct Sc=22.73
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCTcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig143.trna32 (3537153-3537077) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3537119-3537117) Score: 99.17
HMM Sc=75.58 Sec struct Sc=23.59
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna33 (3537062-3536987) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (3537029-3537027) Score: 94.01
HMM Sc=81.78 Sec struct Sc=12.23
* | * | * | * | * | * | * | *
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATCGGTTCAAATCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig143.trna34 (3531997-3531911) Length: 87 bp
Type: Leu Anticodon: TAA at 35-37 (3531963-3531961) Score: 68.33
HMM Sc=37.94 Sec struct Sc=30.39
* | * | * | * | * | * | * | * | *
Seq: GCCCGAGTGGTGGAAGTGGTaGACACAAGGGATTTAAAATCCCTCGGCTTACGAGCTGTGCCGGTTCAAGTCCGGCCTCGGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig143.trna35 (3405274-3405199) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (3405241-3405239) Score: 86.96
HMM Sc=67.19 Sec struct Sc=19.77
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCAGGAGTTCAATTCTCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna36 (3048476-3048400) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (3048442-3048440) Score: 89.44
HMM Sc=71.98 Sec struct Sc=17.46
* | * | * | * | * | * | * | *
Seq: GCGCCTGTAGCTCAGTCGGAtAGAGCAACTGCCTTCTAAGCAGTCGGcCAGGGGTTCGAATCCTCTCAGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna37 (3025378-3025302) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3025344-3025342) Score: 90.01
HMM Sc=70.02 Sec struct Sc=19.99
* | * | * | * | * | * | * | *
Seq: GGAGCGGTAGTTAAGTCGGTtATAACGCCGGCCTGTCACGCCGGAGGcCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna38 (3012278-3012203) Length: 76 bp
Type: Val Anticodon: CAC at 34-36 (3012245-3012243) Score: 91.35
HMM Sc=68.45 Sec struct Sc=22.90
* | * | * | * | * | * | * | *
Seq: GGACGGTTAGCTCAGCTGGTAGAGCACTGCCTTCACACGGCAGGGGcCACAGGTTCAAGTCCTGTACCGTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna39 (3012197-3012121) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3012163-3012161) Score: 90.01
HMM Sc=70.02 Sec struct Sc=19.99
* | * | * | * | * | * | * | *
Seq: GGAGCGGTAGTTAAGTCGGTtATAACGCCGGCCTGTCACGCCGGAGGcCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna40 (2908486-2908395) Length: 92 bp
Type: Ser Anticodon: TGA at 37-39 (2908450-2908448) Score: 67.13
HMM Sc=32.54 Sec struct Sc=34.59
* | * | * | * | * | * | * | * | * |
Seq: GGAAGGGTGGCAGAGTCcGGTttAATGCGGCGGTCTTGAAAACCGTTGAGGGTTTGCGCTCTCCGGGGGTTCGAATCCCTCCCCTTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig143.trna41 (2657309-2657235) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (2657277-2657275) Score: 79.45
HMM Sc=55.80 Sec struct Sc=23.65
* | * | * | * | * | * | * |
Seq: AGGCGCGTAGCTCAGTGGGAGAGCACTTCCTTGACACGGAAGGGGtCGGCAGTTCAATCCTGCCCGTGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna42 (2607581-2607505) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (2607547-2607545) Score: 99.17
HMM Sc=75.58 Sec struct Sc=23.59
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna43 (2607490-2607415) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (2607457-2607455) Score: 94.01
HMM Sc=81.78 Sec struct Sc=12.23
* | * | * | * | * | * | * | *
Seq: GGGGGCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATCGGTTCAAATCCGTTCGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig143.trna44 (2265146-2265062) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2265112-2265110) Score: 72.42
HMM Sc=43.89 Sec struct Sc=28.53
* | * | * | * | * | * | * | * |
Seq: GCGAGAGTGGCGGAATTGGTaGACGCACTGGACTTAGGATCCAGCGCCTTTGTGCGTAGGAGTTCGAGTCTCCTCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig143.trna45 (2031984-2031899) Length: 86 bp
Type: Leu Anticodon: GAG at 35-37 (2031950-2031948) Score: 59.85
HMM Sc=33.89 Sec struct Sc=25.96
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGTGGAACTGGTaGACACGCTATCTTGAGGGGGTAGTGGATTACgTCCGTGCGGGTTCGAGTCCCGCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
Contig143.trna46 (1997294-1997218) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1997260-1997258) Score: 89.22
HMM Sc=67.54 Sec struct Sc=21.68
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGTTGGTtAGAGCATGCGGCTCATATCCGCAGTGtCGGGGGTTCAATTCCCTCCCTCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna47 (1997078-1997002) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1997044-1997042) Score: 89.22
HMM Sc=67.54 Sec struct Sc=21.68
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGTTGGTtAGAGCATGCGGCTCATATCCGCAGTGtCGGGGGTTCAATTCCCTCCCTCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna48 (1840384-1840308) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1840350-1840348) Score: 92.28
HMM Sc=73.13 Sec struct Sc=19.15
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGCACATGGCTACGAACCATGCGGtCGGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna49 (1840285-1840209) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1840251-1840249) Score: 92.28
HMM Sc=73.13 Sec struct Sc=19.15
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGCACATGGCTACGAACCATGCGGtCGGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna50 (1840181-1840105) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1840147-1840145) Score: 92.28
HMM Sc=73.13 Sec struct Sc=19.15
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGCACATGGCTACGAACCATGCGGtCGGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna51 (1722208-1722132) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (1722174-1722172) Score: 90.12
HMM Sc=63.26 Sec struct Sc=26.86
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCTtGGTAGCGCACCTGCCTTGGGAGCAGGGGGtCGCACGTTCAAATCGTGTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna52 (1594652-1594575) Length: 78 bp
Type: Pro Anticodon: CGG at 36-38 (1594617-1594615) Score: 84.91
HMM Sc=60.48 Sec struct Sc=24.43
* | * | * | * | * | * | * | *
Seq: CGGGATGTGGCTCAGTTtGGCtAGAGCGCAGCGTTCGGGACGCTGAGGcCGAAGGTTCGAATCCTTTCATCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna53 (1531804-1531715) Length: 90 bp
Type: SeC(p) Anticodon: TCA at 35-37 (1531770-1531768) Score: 65.06
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | *
Seq: GGAAGCGTATCGTCACCGGTGTGGCGCCCGGTCTTCAAAACCGGTGGACGGCTGAGAGGTCGTCGGTAGGTTCGACTCCTATACGCTTCC
Str: >>>>>>>>..>>>>>>....<<<<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<<<<<<<<<
Contig143.trna54 (1383209-1383134) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1383176-1383174) Score: 79.55
HMM Sc=56.48 Sec struct Sc=23.07
* | * | * | * | * | * | * | *
Seq: TCCCTGGTAGCTCAATCGGCAGAGCGGGTGACTGTTAATCACTAGGtTGGCGGTTCAAGTCCGTCCCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna55 (1382598-1382523) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1382565-1382563) Score: 79.55
HMM Sc=56.48 Sec struct Sc=23.07
* | * | * | * | * | * | * | *
Seq: TCCCTGGTAGCTCAATCGGCAGAGCGGGTGACTGTTAATCACTAGGtTGGCGGTTCAAGTCCGTCCCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna56 (1319680-1319605) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (1319647-1319645) Score: 90.63
HMM Sc=72.39 Sec struct Sc=18.24
* | * | * | * | * | * | * | *
Seq: GGGTCATTAGCTCAATTGGTAGAGCAGCTGACTCTTAATCAGTTGGtTCGGGGTTCGAGTCCCTGATGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna57 (1109721-1109628) Length: 94 bp
Type: Ser Anticodon: GCT at 36-38 (1109686-1109684) Score: 73.53
HMM Sc=35.94 Sec struct Sc=37.59
* | * | * | * | * | * | * | * | * |
Seq: GGTGAGGTGTCCGAGTTGGCcgAAGGAGCTCGCCTGCTAAGCGAGTATACGGTGTAGaGCCGTATCGAGAGTTCAAATCTCTCCCTCACCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig143.trna58 (1028620-1028529) Length: 92 bp
Type: Ser Anticodon: GGA at 36-38 (1028585-1028583) Score: 65.11
HMM Sc=29.50 Sec struct Sc=35.61
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGGTGTCCGAGCTGGCcgAAGGAGCACGATTGGAAATCGTGTGTACCTTAACaGGGTACCGAGAGTTCGAATCTCTCCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig143.trna59 (1028258-1028167) Length: 92 bp
Type: Ser Anticodon: GGA at 36-38 (1028223-1028221) Score: 65.11
HMM Sc=29.50 Sec struct Sc=35.61
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGGTGTCCGAGCTGGCcgAAGGAGCACGATTGGAAATCGTGTGTACCTTAACaGGGTACCGAGAGTTCGAATCTCTCCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig143.trna60 (917678-917593) Length: 86 bp
Type: Leu Anticodon: GAG at 35-37 (917644-917642) Score: 59.85
HMM Sc=33.89 Sec struct Sc=25.96
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGTGGAACTGGTaGACACGCTATCTTGAGGGGGTAGTGGATTACgTCCGTGCGGGTTCGAGTCCCGCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
Contig143.trna61 (903983-903897) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (903949-903947) Score: 61.00
HMM Sc=34.07 Sec struct Sc=26.93
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCTAGGTTCAGGGTCTAGTGGGGGTTCCCCCGTGGGAGTTCGAGTCTCCCCCCCGGCACCA
Str: >>>>.>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<.<<<<....
Contig143.trna62 (640811-640737) Length: 75 bp
Type: Gln Anticodon: CTG at 34-36 (640778-640776) Score: 63.09
HMM Sc=39.81 Sec struct Sc=23.28
* | * | * | * | * | * | * |
Seq: TGGGCTGTCGTTCAATTGGCAGGACGACGGATTCTGGCTCCGTTAATCAAGGTTCGAGTCCTTGCAGCCCAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig143.trna63 (640722-640645) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (640686-640684) Score: 67.57
HMM Sc=41.21 Sec struct Sc=26.36
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGCCtGGCctAGGACACCTGCCTTTCACGCAGGCGACAGGGGTTCAAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig143.trna64 (560373-560298) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (560340-560338) Score: 84.84
HMM Sc=62.16 Sec struct Sc=22.68
* | * | * | * | * | * | * | *
Seq: GCGAATGTAGCTCAGTTGGTAGAGCACACGGTTGTGGCCCGTGTGGcCGCGGGTTCAAGTCCCGTCATTCGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig143.trna65 (179836-179761) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (179803-179801) Score: 84.25
HMM Sc=64.79 Sec struct Sc=19.46
* | * | * | * | * | * | * | *
Seq: GGGGCGTTAACTCAGCCGGTAGAGTACCTGCCTTTTAAGCAGAGAGcCGCTGGTTCGAATCCAGCACGCCCCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig143.trna66 (137107-137031) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (137073-137071) Score: 88.41
HMM Sc=63.73 Sec struct Sc=24.68
* | * | * | * | * | * | * | *
Seq: GGGCAATTAGCTCAGTTGGAtAGAGCGTCAGCCTCCGGAGCTGAAGGcCACAAGTTCGAATCTTGTATTGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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