RP287   

       247 letters
sce    73 _  YOR320c (491)      KOG1950
cel    68    CE09935 (693)

BLASTP 2.2.4 [Aug-26-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= RP287
         (247 letters)

Database: kyva 
           112,920 sequences; 47,500,486 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOR320c                                                                33   0.70 
CE09935                                                                31   2.7  

# >YOR320c
#           Length = 491
# 
#  Score = 32.7 bits (73), Expect = 0.70
#  Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
# 
# Query: 111 VANIMLQNYVKQREKYNYDTLKEQFTFIKNASTSIVYMQFANFMNIDNSLSPVI 164
#            + N+ML   + ++EKY+ D + E+   +K     I+Y QF  F  +     P +
# Sbjct: 330 IVNVMLPKILNKKEKYDMDLINEEMYNLK----KIIYKQFIFFRKVRKLFKPEV 379
# 
# 
# >CE09935
#           Length = 693
# 
#  Score = 30.8 bits (68), Expect = 2.7
#  Identities = 21/85 (24%), Positives = 42/85 (48%), Gaps = 9/85 (10%)
# 
# Query: 88  DDSEKQATITNTKHSTLANPYIAVANIMLQNYVKQREKYNYDTLKEQFTFIK-NASTSIV 146
#            +D+E    + +T+  T    +IA+  I  +N+V    K+ YD +++ ++  K N S+ + 
# Sbjct: 492 NDTESHQDVVSTQLLTWRQQHIALGPISRENHV----KFTYDVMRDMYSHTKPNGSSYVP 547
# 
# Query: 147 YMQFANFMNIDNSLSPVIRYQKLYR 171
#            Y    N  NI+  +   +    L+R
# Sbjct: 548 Y----NVENIERVVDKRLNQVYLHR 568
# 
# 
  Database: kyva
    Posted date:  Nov 11, 2002  5:09 AM
  Number of letters in database: 47,500,486
  Number of sequences in database:  112,920
  
Lambda     K      H
   0.319    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,658,750
Number of Sequences: 112920
Number of extensions: 555543
Number of successful extensions: 1356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 2
length of query: 247
length of database: 47,500,486
effective HSP length: 106
effective length of query: 141
effective length of database: 35,530,966
effective search space: 5009866206
effective search space used: 5009866206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
S2: 64 (29.3 bits)