| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
|---|---|---|---|---|---|---|---|---|---|---|
| 204734 | hypothetical | YPO4034 | putative AraC-family transcriptional regulatory protein N-terminus similar to Bacillus subtilis catabolite control protein A CcpA SW:CCPA_BACSU (P25144) (334 aa) fasta scores: E(): 8.7e-06, 23.8% id in 281 aa Full length CDS similar to Escherichia coli xylose operon regulatory protein XylR SW:XYLR_ECOLI (P37390) (392 aa) fasta scores: E(): 0, 79.7% id in 395 aa | genbank | 16124154 | NP_407467.1 | 397 | 4548192 | 4549385 | |
| 204735 | hypothetical | YPO4035 | sugar transport system permease protein Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 1.4e-22, 36.8% id in 356 aa, and to Escherichia coli xylose transport system permease protein XylH SW:XYLH_ECOLI (P37389) (393 aa) fasta scores: E(): 0, 84.6% id in 395 aa | genbank | 16124155 | NP_407468.1 | 394 | 4549475 | 4550659 | |
| 204736 | hypothetical | YPO4036 | sugar transport ATP-binding protein Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0, 41.7% id in 499 aa, and to Escherichia coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0, 78.7% id in 508 aa | genbank | 16124156 | NP_407469.1 | 510 | 4550646 | 4552178 | |
| 204737 | hypothetical | YPO4037 | sugar-binding periplasmic protein Similar to Agrobacterium tumefaciens multiple sugar-binding periplasmic receptor ChvE SW:CVE1_AGRTU (P25548) (354 aa) fasta scores: E(): 3.6e-19, 36.0% id in 350 aa, and to Escherichia coli D-xylose-binding periplasmic protein precursor XylF SW:XYLF_ECOLI (P37387) (330 aa) fasta scores: E(): 0, 82.1% id in 330 aa | genbank | 16124157 | NP_407470.1 | 331 | 4552386 | 4553381 | |
| 204738 | xylA | hypothetical | YPO4038 | xylose isomerase catalyzes the interconversion of D-xylose to D-xylulose | genbank | 16124158 | NP_407471.1 | 439 | 4553844 | 4555163 |
| 204739 | xylB | hypothetical | YPO4039 | xylulose kinase Similar to Escherichia coli xylulose kinase XylB SW:XYLB_ECOLI (P09099) (484 aa) fasta scores: E(): 0, 72.0% id in 482 aa, and to Klebsiella pneumoniae xylulose kinase XylB SW:XYLB_KLEPN (P29444) (483 aa) fasta scores: E(): 0, 66.4% id in 482 aa | genbank | 16124159 | NP_407472.1 | 484 | 4555287 | 4556741 |
| 204740 | hypothetical | YPO4040 | hypothetical protein Similar to Escherichia coli hypothetical protein YbgO SW:YBGO_ECOLI (P75748) (353 aa) fasta scores: E(): 7.7e-20, 31.9% id in 348 aa, and to Escherichia coli hypothetical protein YqiI SW:YQII_ECOLI (P76656) (354 aa) fasta scores: E(): 1e-11, 26.7% id in 352 aa | genbank | 16124160 | NP_407473.1 | 328 | 4556859 | 4557845 | |
| 204741 | hypothetical | YPO4041 | putative fimbrial chaperone Similar to Proteus mirabilis fimbrial chaperone MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0, 44.9% id in 247 aa, and to Escherichia coli hypothetical fimbrial chaperone YbgP SW:YBGP_ECOLI (P75749) (242 aa) fasta scores: E(): 0, 47.1% id in 238 aa | genbank | 16124161 | NP_407474.1 | 255 | 4557884 | 4558651 | |
| 204742 | hypothetical | YPO4044 | fimbrial protein Similar to Salmonella typhimurium long polar fimbria protein A LpfA SW:LPFA_SALTY (P43660) (178 aa) fasta scores: E(): 3.4e-11, 32.8% id in 186 aa, and to Escherichia coli hypothetical fimbrial-like protein YbgD SW:YBGD_ECOLI (P37909) (188 aa) fasta scores: E(): 3.7e-15, 39.5% id in 190 aa | genbank | 16124162 | NP_407475.1 | 185 | 4561310 | 4561867 | |
| 204743 | hypothetical | YPO4045 | hypothetical protein Similar to Escherichia coli hypothetical protein YiaH SW:YIAH_ECOLI (P37669) (331 aa) fasta scores: E(): 0, 58.0% id in 331 aa, and to Rickettsia prowazekii hypothetical protein RP338 TR:Q9ZDJ0 (EMBL:AJ235271) (347 aa) fasta scores: E(): 1.2e-11, 25.1% id in 339 aa | genbank | 16124163 | NP_407476.1 | 330 | 4562749 | 4563741 | |
| 204744 | hypothetical | YPO4046 | IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20, 39.6% id in 169 aa | genbank | 16124164 | NP_407477.1 | 171 | 4564104 | 4564619 | |
| 204745 | hypothetical | YPO4047 | IS1661 transposase Similar to Escherichia coli insertion sequence IS1397 transposase, OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0, 53.0% id in 234 aa | genbank | 16124165 | NP_407478.1 | 261 | 4564673 | 4565458 | |
| 204746 | mdfA | hypothetical | YPO4048 | multidrug translocase Similar to Escherichia coli multidrug translocase MdfA SW:MDFA_ECOLI (Q46966) (410 aa) fasta scores: E(): 0, 73.0% id in 400 aa, and to Escherichia coli hypothetical protein YjiO SW:YJIO_ECOLI (P39386) (410 aa) fasta scores: E(): 0, 43.2% id in 377 aa | genbank | 16124166 | NP_407479.1 | 409 | 4565931 | 4567160 |
| 204747 | hypothetical | YPO4049 | hypothetical protein No significant database matches to the full length CDS. Similar to an internal region of Escherichia coli O157:H7 hypothetical protein Z4810 TR:AAG58551 (EMBL:AE005568) (303 aa) fasta scores: E(): 0.0042, 25.4% id in 236 aa | genbank | 16124167 | NP_407480.1 | 193 | 4567870 | 4568451 | |
| 204748 | hypothetical | YPO4050 | hypothetical protein Poor database matches, similar to C-terminal region of Saccharomyces cerevisiae chromosome XVI hypothetical protein YPL200w TR:Q08955 (EMBL:Z73556) (156 aa) fasta scores: E(): 0.8, 24.0% id in 104 aa | genbank | 16124168 | NP_407481.1 | 110 | 4568465 | 4568797 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 204749 | tnpA | hypothetical | YPO4051 | transposase (partial) Probable gene remnant. Similar to internal regions of Yersinia pestis plasmid pCD1 transposase TnpA TR:O68711 (EMBL:AF053946) (771 aa) fasta scores: E(): 0, 86.6% id in 134 aa, and Pseudomonas sp BW13 transposase TnpA TR:CAC14717 (EMBL:Y17830) (1001 aa) fasta scores: E(): 0, 86.2% id in 138 aa | genbank | 16124169 | NP_407482.1 | 161 | 4569065 | 4569550 |
| 204750 | selA | hypothetical | YPO4054 | selenocysteine synthase catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis | genbank | 16124170 | NP_407483.1 | 462 | 4571507 | 4572895 |
| 204751 | fdhE | hypothetical | YPO4055 | formate dehydrogenase accessory protein FdhE required for the formation of active formate dehydrogenase | genbank | 16124171 | NP_407484.1 | 309 | 4573079 | 4574008 |
| 204752 | fdoI | hypothetical | YPO4056 | formate dehydrogenase, cytochrome b556 protein Similar to Escherichia coli formate dehydrogenase, cytochrome b556 protein FdoI SW:FDOI_ECOLI (P32174) (211 aa) fasta scores: E(): 0, 79.5% id in 210 aa, and to Haemophilus influenzae formate dehydrogenase, cytochrome b556 protein FdxI SW:FDXI_HAEIN (P44451) (238 aa) fasta scores: E(): 0, 50.0% id in 202 aa | genbank | 16124172 | NP_407485.1 | 224 | 4574008 | 4574682 |
| 204753 | fdoH | hypothetical | YPO4057 | formate dehydrogenase-O, iron-sulfur subunit Similar to Escherichia coli formate dehydrogenase-O, iron-sulfur subunit FdoH SW:FDOH_ECOLI (P32175) (300 aa) fasta scores: E(): 0, 86.3% id in 292 aa, and to Escherichia coli formate dehydrogenase, nitrate-inducible, iron-sulfur subunit FdnH SW:FDNH_ECOLI (P24184) (294 aa) fasta scores: E(): 0, 78.2% id in 293 aa | genbank | 16124173 | NP_407486.1 | 323 | 4574679 | 4575650 |
| 204754 | fdhD | hypothetical | YPO4060 | formate dehydrogenase accessory protein involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth | genbank | 16124174 | NP_407487.1 | 274 | 4578907 | 4579731 |
| 204755 | sodA | hypothetical | YPO4061 | superoxide dismutase Similar to Yersinia enterocolitica superoxide dismutase [Mn] SodA SW:SODM_YEREN (P53655) (207 aa) fasta scores: E(): 0, 97.6% id in 207 aa, and to Escherichia coli superoxide dismutase [Mn] SodA SW:SODM_ECOLI (P00448) (205 aa) fasta scores: E(): 0, 85.0% id in 206 aa | genbank | 16124175 | NP_407488.1 | 207 | 4580167 | 4580790 |
| 204756 | tar | hypothetical | YPO4062 | methyl-accepting chemotaxis protein II Similar to the C-terminal regions of Escherichia coli methyl-accepting chemotaxis protein II Tar SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0, 46.8% id in 530 aa, and Salmonella typhimurium methyl-accepting chemotaxis protein II Tar SW:MCP2_SALTY (P02941) (553 aa) fasta scores: E(): 0, 46.3% id in 525 aa | genbank | 16124176 | NP_407489.1 | 649 | 4581134 | 4583083 |
| 204757 | hypothetical | YPO4063 | hypothetical protein No significant database matches | genbank | 16124177 | NP_407490.1 | 110 | 4583273 | 4583605 | |
| 204758 | hypothetical | YPO4064 | hypothetical protein Similar to C-terminal regions of Streptomyces coelicolor putative secreted protein SCJ1.02C TR:Q9RJ12 (EMBL:AL109962) (195 aa) fasta scores: E(): 0.00066, 25.6% id in 133 aa, and Actinosynnema pretiosum hypothetical protein TR:O69206 (EMBL:U33059) (190 aa) fasta scores: E(): 2.1, 27.0% id in 148 aa | genbank | 16124178 | NP_407491.1 | 150 | 4584161 | 4584613 | |
| 204759 | hypothetical | YPO4065 | hypothetical protein Similar to Escherichia coli hypothetical protein YibL SW:YIBL_ECOLI (P36564) (120 aa) fasta scores: E(): 2.9e-21, 61.2% id in 116 aa, and to the C-terminus of Vibrio cholerae hypothetical protein VCA0010 TR:Q9KNF4 (EMBL:AE004344) (145 aa) fasta scores: E(): 5.7e-10, 33.1% id in 118 aa | genbank | 16124179 | NP_407492.1 | 118 | 4584782 | 4585138 | |
| 204760 | mtlR | hypothetical | YPO4066 | mannitol operon repressor Similar to C-terminal regions of Escherichia coli mannitol operon repressor MtlR SW:MTLR_ECOLI (P36563) (195 aa) fasta scores: E(): 0, 77.5% id in 173 aa, and Klebsiella pneumoniae Mtl operon repressor MtlR TR:Q9XBM5 (EMBL:AF166095) (198 aa) fasta scores: E(): 0, 75.7% id in 181 aa. CDS appears to be truncated at the N-terminus in comparison to other orthologues. Effect on function not known | genbank | 16124180 | NP_407493.1 | 184 | 4585387 | 4585941 |
| 204761 | mtlD | hypothetical | YPO4067 | mannitol-1-phosphate 5-dehydrogenase Similar to Klebsiella pneumoniae mannitol-1-phosphate 5-dehydrogenase MtlD SW:MTLD_KLEPN (Q9XBM6) (382 aa) fasta scores: E(): 0, 76.6% id in 380 aa, and to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD SW:MTLD_ECOLI (P09424) (382 aa) fasta scores: E(): 0, 75.7% id in 382 aa | genbank | 16124181 | NP_407494.1 | 387 | 4586148 | 4587311 |
| 204762 | mtlA | hypothetical | YPO4068 | PTS system, mannitol-specific IIABC component Similar to Escherichia coli PTS system, mannitol-specific IIABC component MtlA SW:PTMA_ECOLI (P00550) (637 aa) fasta scores: E(): 0, 81.7% id in 638 aa, and to Klebsiella pneumoniae PTS system, mannitol-specific IIABC component MtlA SW:PTMA_KLEPN (Q9XBM7) (635 aa) fasta scores: E(): 0, 81.1% id in 635 aa | genbank | 16124182 | NP_407495.1 | 643 | 4587448 | 4589379 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 204763 | hypothetical | YPO4070 | hypothetical protein Similar to the C-terminus of Escherichia coli hypothetical protein YiaF SW:YIAF_ECOLI (P37667) (276 aa) fasta scores: E(): 0, 50.4% id in 228 aa | genbank | 16124183 | NP_407496.1 | 241 | 4590029 | 4590754 | |
| 204764 | glyS | hypothetical | YPO4071 | glycyl-tRNA synthetase beta subunit glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the | genbank | 16124184 | NP_407497.1 | 689 | 4591221 | 4593290 |
| 204765 | glyQ | hypothetical | YPO4072 | glycyl-tRNA synthetase alpha subunit glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of th | genbank | 16124185 | NP_407498.1 | 304 | 4593300 | 4594214 |
| 204766 | tag | hypothetical | YPO4074 | DNA-3-methyladenine glycosylase Similar to Escherichia coli DNA-3-methyladenine glycosylase I Tag SW:3MG1_ECOLI (P05100) (187 aa) fasta scores: E(): 0, 69.7% id in 185 aa, and to Haemophilus influenzae DNA-3-methyladenine glycosylase Tag SW:3MGA_HAEIN (P44321) (185 aa) fasta scores: E(): 0, 61.5% id in 179 aa | genbank | 16124186 | NP_407499.1 | 190 | 4594542 | 4595114 |
| 204767 | hypothetical | YPO4075 | putative acetyltransferase Similar to Escherichia coli hypothetical protein YiaC SW:YIAC_ECOLI (P37664) (146 aa) fasta scores: E(): 9.9e-23, 43.2% id in 146 aa, and to Pseudomonas aeruginosa probable acetyltransferase PA0249 TR:AAG03638 (EMBL:AE004463) (148 aa) fasta scores: E(): 7.7e-13, 36.9% id in 130 aa | genbank | 16124187 | NP_407500.1 | 151 | 4595111 | 4595566 | |
| 204768 | hypothetical | YPO4076 | putative lipoprotein Similar to Escherichia coli hypothetical lipoprotein YiaD SW:YIAD_ECOLI (P37665) (219 aa) fasta scores: E(): 0, 77.6% id in 219 aa, and to Shewanella violacea hypothetical protein TR:Q9S0K6 (EMBL:AB033988) (220 aa) fasta scores: E(): 0, 58.2% id in 220 aa | genbank | 16124188 | NP_407501.1 | 219 | 4595924 | 4596583 | |
| 204769 | hypothetical | YPO4077 | hypothetical protein Similar to Vibrio cholerae hypothetical protein VC2666 TR:Q9KNR5 (EMBL:AE004332) (205 aa) fasta scores: E(): 1.1e-24, 40.2% id in 199 aa, and to Deinococcus radiodurans conserved hypothetical protein DR0999 TR:Q9RVM8 (EMBL:AE001952) (225 aa) fasta scores: E(): 8.8e-14, 30.0% id in 210 aa | genbank | 16124189 | NP_407502.1 | 214 | 4596714 | 4597358 | |
| 204770 | hypothetical | YPO4078 | 2-hydroxyacid dehydrogenase Involved in the metabolism of aromatic amino acids | genbank | 16124190 | NP_407503.1 | 326 | 4597877 | 4598857 | |
| 204771 | malS | hypothetical | YPO4080 | periplasmic alpha-amylase precursor periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds | genbank | 16124191 | NP_407504.1 | 687 | 4599146 | 4601209 |
| 204772 | hypothetical | YPO4081 | hypothetical protein Poor database matches | genbank | 16124192 | NP_407505.1 | 147 | 4601624 | 4602067 | |
| 204773 | avtA | hypothetical | YPO4082 | valine--pyruvate transaminase transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis | genbank | 16124193 | NP_407506.1 | 421 | 4602522 | 4603787 |
| 204774 | hypothetical | YPO4083 | hypothetical protein Similar to Escherichia coli hypothetical protein YidE SW:YIDE_ECOLI (P29211) (553 aa) fasta scores: E(): 0, 75.0% id in 552 aa, and to Haemophilus influenzae hypothetical protein HI0035 SW:YIDE_HAEIN (P44472) (551 aa) fasta scores: E(): 0, 65.6% id in 550 aa | genbank | 16124194 | NP_407507.1 | 552 | 4603900 | 4605558 | |
| 204775 | ibpB | hypothetical | YPO4084 | heat shock protein Similar to Escherichia coli heat shock protein B IbpB SW:IBPB_ECOLI (P29210) (142 aa) fasta scores: E(): 0, 59.9% id in 147 aa, and to Escherichia coli heat shock protein B IbpA SW:IBPA_ECOLI (P29209) (137 aa) fasta scores: E(): 3.1e-22, 47.8% id in 136 aa | genbank | 16124195 | NP_407508.1 | 154 | 4605931 | 4606395 |
| 204776 | ibpA | hypothetical | YPO4085 | heat shock protein Similar to Escherichia coli heat shock protein A IbpA SW:IBPA_ECOLI (P29209) (137 aa) fasta scores: E(): 0, 82.4% id in 136 aa, and to Vibrio cholerae heat shock protein A VC0018 TR:Q9KVX0 (EMBL:AE004094) (145 aa) fasta scores: E(): 4.5e-32, 56.9% id in 137 aa | genbank | 16124196 | NP_407509.1 | 137 | 4606676 | 4607089 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 204777 | hypothetical | YPO4086 | putative lipoprotein Similar to Escherichia coli hypothetical protein Yidq or b3688 SW:YIDQ_ECOLI (P31454) (135 aa) fasta scores: E(): 8.5e-15, 43.3% id in 104 aa. CDS is truncated at the N-terminus in comparison to the E. coli protein | genbank | 16124197 | NP_407510.1 | 112 | 4607457 | 4607795 | |
| 204778 | hypothetical | YPO4089 | hypothetical protein Similar to Escherichia coli threonine dehydratase catabolic TdcB SW:THD2_ECOLI (P05792) (329 aa) fasta scores: E(): 0, 36.9% id in 317 aa, and to the N-terminal region of Thermotoga maritima threonine dehydratase catabolic TM0356 TR:Q9WYJ1 (EMBL:AE001716) (401 aa) fasta scores: E(): 0, 44.2% id in 310 aa | genbank | 16124198 | NP_407511.1 | 320 | 4608658 | 4609620 | |
| 204779 | hypothetical | YPO4090 | ornithine cyclodeaminase catalyzes the formation of L-proline from L-ornithine | genbank | 16124199 | NP_407512.1 | 317 | 4609614 | 4610567 | |
| 204780 | hypothetical | YPO4091 | IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20, 39.6% id in 169 aa | genbank | 16124200 | NP_407513.1 | 171 | 4610774 | 4611289 | |
| 204781 | hypothetical | YPO4092 | IS1661 transposase Similar to Escherichia coli insertion sequence IS1397 transposase, OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0, 53.0% id in 234 aa | genbank | 16124201 | NP_407514.1 | 261 | 4611343 | 4612128 | |
| 204782 | hypothetical | YPO4093 | putative haloacid dehalogenase-like hydrolase Similar to Escherichia coli hypothetical protein YidA SW:YIDA_ECOLI (P09997) (270 aa) fasta scores: E(): 0, 63.8% id in 268 aa, and to Bacillus subtilis hypothetical protein YxeH SW:YXEH_BACSU (P54947) (270 aa) fasta scores: E(): 0, 49.4% id in 265 aa | genbank | 16124202 | NP_407515.1 | 269 | 4612519 | 4613328 | |
| 204783 | gyrB | hypothetical | YPO4094 | DNA gyrase subunit B negatively supercoils closed circular double-stranded DNA | genbank | 16124203 | NP_407516.1 | 804 | 4613544 | 4615958 |
| 204784 | recF | hypothetical | YPO4095 | recombination protein F Required for DNA replication; binds preferentially to single-stranded, linear DNA | genbank | 16124204 | NP_407517.1 | 361 | 4615978 | 4617063 |
| 204785 | dnaN | hypothetical | YPO4096 | DNA polymerase III subunit beta binds the polymerase to DNA and acts as a sliding clamp | genbank | 16124205 | NP_407518.1 | 366 | 4617236 | 4618336 |
| 204786 | dnaA | hypothetical | YPO4097 | chromosomal replication initiation protein binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself | genbank | 16124206 | NP_407519.1 | 462 | 4618341 | 4619729 |
| 204787 | hypothetical | YPO4098 | hypothetical protein no significant database hits | genbank | 16124207 | NP_407520.1 | 69 | 4619853 | 4620062 | |
| 204788 | rpmH | hypothetical | YPO4100 | 50S ribosomal protein L34 The function of this ribosomal subunit is unknown | genbank | 16124208 | NP_407521.1 | 46 | 4620439 | 4620579 |
| 204789 | rnpA | hypothetical | YPO4101 | ribonuclease P protein compoenent of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates | genbank | 16124209 | NP_407522.1 | 119 | 4620598 | 4620957 |
| 204790 | hypothetical | YPO4102 | inner membrane protein translocase component YidC functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria | genbank | 16124210 | NP_407523.1 | 546 | 4621181 | 4622821 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 204791 | thdF | hypothetical | YPO4103 | tRNA modification GTPase Involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs | genbank | 16124211 | NP_407524.1 | 454 | 4622964 | 4624328 |
| 204792 | hypothetical | YPO4104 | hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA2950 TR:AAG06338 (EMBL:AE004721) (398 aa) fasta scores: E(): 0, 79.4% id in 398 aa, and to Xylella fastidiosa hypothetical protein XF1835 TR:Q9PCE6 (EMBL:AE004005) (424 aa) fasta scores: E(): 0, 57.0% id in 395 aa | genbank | 16124212 | NP_407525.1 | 399 | 4624514 | 4625713 | |
| 204793 | hypothetical | YPO4105 | hypothetical protein No significant database matches. Similar to C-terminal region of YPO2863 (57.0% identity in 86 aa overlap) | genbank | 16124213 | NP_407526.1 | 91 | 4626181 | 4626456 | |
| 204794 | hypothetical | YPO4106 | hypothetical protein no significant database hits | genbank | 16124214 | NP_407527.1 | 206 | 4626524 | 4627144 | |
| 204795 | hypothetical | YPO4107 | Xanthine/uracil permeases family protein Similar to Escherichia coli hypothetical protein YieG SW:YIEG_ECOLI (P31466) (445 aa) fasta scores: E(): 0, 86.8% id in 432 aa, and to Escherichia coli hypothetical protein YicO or b3664 SW:YICO_ECOLI (P31440) (470 aa) fasta scores: E(): 0, 76.2% id in 445 aa | genbank | 16124215 | NP_407528.1 | 442 | 4627689 | 4629017 | |
| 204796 | hypothetical | YPO4108 | putative haloacid dehalogenase-like hydrolase Similar to Escherichia coli hypothetical protein YieH SW:YIEH_ECOLI (P31467) (221 aa) fasta scores: E(): 0, 62.3% id in 220 aa, and to Vibrio cholerae CbbY family protein VCA0798 TR:Q9KLE8 (EMBL:AE004407) (226 aa) fasta scores: E(): 3e-26, 35.1% id in 211 aa | genbank | 16124216 | NP_407529.1 | 222 | 4629510 | 4630178 | |
| 204797 | hypothetical | YPO4109 | putative amino acid transport system permease Similar to Escherichia coli glutamine transport system permease protein GlnP SW:GLNP_ECOLI (P10345) (219 aa) fasta scores: E(): 4.2e-18, 33.6% id in 214 aa, and to Pseudomonas aeruginosa probable amino acid permease PA2202 TR:AAG05590 (EMBL:AE004646) (225 aa) fasta scores: E(): 0, 65.3% id in 222 aa | genbank | 16124217 | NP_407530.1 | 251 | 4630213 | 4630968 | |
| 204798 | hypothetical | YPO4110 | ABC transporter permease Similar to Pseudomonas aeruginosa probable amino acid permease PA2203 TR:AAG05591 (EMBL:AE004646) (238 aa) fasta scores: E(): 0, 64.5% id in 234 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter PA4194 TR:AAG07581 (EMBL:AE004835) (232 aa) fasta scores: E(): 1.9e-19, 42.6% id in 230 aa | genbank | 16124218 | NP_407531.1 | 245 | 4630970 | 4631707 | |
| 204799 | hypothetical | YPO4111 | putative periplasmic solute-binding protein Similar to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA2204 TR:AAG05592 (EMBL:AE004647) (268 aa) fasta scores: E(): 0, 58.4% id in 262 aa, and to Bacillus subtilis glutamine ABC transporter protein GlnH TR:O34563 (EMBL:Z99117) (273 aa) fasta scores: E(): 1.7e-21, 33.6% id in 271 aa | genbank | 16124219 | NP_407532.1 | 284 | 4631890 | 4632744 | |
| 204800 | hypothetical | YPO4112 | hypothetical protein Poor database matches, similar to Proteus mirabilis Ccm1 protein TR:O86433 (EMBL:AJ000084) (228 aa) fasta scores: E(): 1.6e-21, 37.7% id in 204 aa | genbank | 16124220 | NP_407533.1 | 223 | 4632964 | 4633635 | |
| 204801 | phoU | hypothetical | YPO4113 | putative phosphate transport system protein Similar to Enterobacter cloacae phosphate transport system protein PhoU SW:PHOU_ENTCL (O32488) (241 aa) fasta scores: E(): 0, 91.3% id in 240 aa, and to Escherichia coli phosphate transport system protein PhoU SW:PHOU_ECOLI (P07656) (241 aa) fasta scores: E(): 0, 89.5% id in 237 aa | genbank | 16124221 | NP_407534.1 | 240 | 4633931 | 4634653 |
| 204802 | pstB | hypothetical | YPO4114 | putative phosphate transport ATP-binding protein Similar to Escherichia coli phosphate transport ATP-binding protein PstB SW:PSTB_ECOLI (P07655) (257 aa) fasta scores: E(): 0, 90.7% id in 258 aa, and to Enterobacter cloacae peripheral membrane protein PstB TR:O32487 (EMBL:D89963) (257 aa) fasta scores: E(): 0, 91.5% id in 258 aa. Similar to YPO2833 (58.8% identity in 250 aa overlap) | genbank | 16124222 | NP_407535.1 | 258 | 4634741 | 4635517 |
| 204803 | pstA | hypothetical | YPO4115 | putative phosphate transport system permease Similar to Escherichia coli phosphate transport system permease protein PstA SW:PSTA_ECOLI (P07654) (296 aa) fasta scores: E(): 0, 88.8% id in 295 aa, and to Enterobacter cloacae integral membrane protein A PstA TR:O32486 (EMBL:D89963) (296 aa) fasta scores: E(): 0, 89.5% id in 295 aa | genbank | 16124223 | NP_407536.1 | 295 | 4635598 | 4636485 |
| 204804 | pstC | hypothetical | YPO4116 | putative phosphate transport system permease Similar to Escherichia coli phosphate transport system permease protein PstC SW:PSTC_ECOLI (P07653) (319 aa) fasta scores: E(): 0, 87.7% id in 317 aa, and to Enterobacter cloacae peripheral membrane protein C PstC TR:O32485 (EMBL:D89963) (319 aa) fasta scores: E(): 0, 88.0% id in 317 aa | genbank | 16124224 | NP_407537.1 | 318 | 4636487 | 4637443 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 204805 | pstS | hypothetical | YPO4117 | putative phosphate-binding periplasmic protein Similar to Escherichia coli phosphate-binding periplasmic protein precursor PstS SW:PSTS_ECOLI (P06128) (346 aa) fasta scores: E(): 0, 85.3% id in 346 aa, and to Enterobacter cloacae phosphate-binding protein PstS TR:O32484 (EMBL:D89963) (346 aa) fasta scores: E(): 0, 83.5% id in 346 aa | genbank | 16124225 | NP_407538.1 | 346 | 4637672 | 4638712 |
| 204806 | glmS | hypothetical | YPO4118 | D-fructose-6-phosphate amidotransferase Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source | genbank | 16124226 | NP_407539.1 | 609 | 4639195 | 4641024 |
| 204807 | glmU | hypothetical | YPO4119 | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis | genbank | 16124227 | NP_407540.1 | 456 | 4641225 | 4642595 |
| 204808 | atpC | hypothetical | YPO4120 | ATP synthase subunit epsilon part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane | genbank | 16124228 | NP_407541.1 | 140 | 4643216 | 4643638 |
| 204809 | atpD | hypothetical | YPO4121 | ATP synthase subunit B Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit | genbank | 16124229 | NP_407542.1 | 460 | 4643660 | 4645042 |
| 204810 | atpG | hypothetical | YPO4122 | ATP synthase subunit C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit | genbank | 16124230 | NP_407543.1 | 287 | 4645198 | 4646061 |
| 204811 | atpA | hypothetical | YPO4123 | ATP synthase subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit | genbank | 16124231 | NP_407544.1 | 513 | 4646123 | 4647664 |
| 204812 | atpH | hypothetical | YPO4124 | ATP synthase subunit D Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex | genbank | 16124232 | NP_407545.1 | 177 | 4647679 | 4648212 |
| 204813 | atpF | hypothetical | YPO4125 | ATP synthase subunit B Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit | genbank | 16124233 | NP_407546.1 | 156 | 4648227 | 4648697 |
| 204814 | atpE | hypothetical | YPO4126 | ATP synthase subunit C Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is a highly hydrophobic protein which is involved in the proton-conducting activity of ATPase | genbank | 16124234 | NP_407547.1 | 79 | 4648759 | 4648998 |
| 204815 | atpB | hypothetical | YPO4127 | ATP synthase subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit | genbank | 16124235 | NP_407548.1 | 274 | 4649048 | 4649872 |
| 204816 | atpI | hypothetical | YPO4128 | ATP synthase subunit I Produces ATP from ADP in the presence of a proton gradient across the membrane | genbank | 16124236 | NP_407549.1 | 127 | 4649912 | 4650295 |
| 204817 | gidB | hypothetical | YPO4129 | glucose-inhibited division protein B probable SAM-dependent methyltransferase | genbank | 16124237 | NP_407550.1 | 206 | 4650962 | 4651582 |
| 204818 | gidA | hypothetical | YPO4130 | glucose-inhibited division protein A GidA; possibly involved in cell division, potential global regulator and modulator of gene expression during translation | genbank | 16124238 | NP_407551.1 | 629 | 4651728 | 4653617 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |