Rotamer libraries in the 21st century. [Curr Opin Struct Biol. 2002]

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1: Curr Opin Struct Biol. 2002 Aug;12(4):431-40. Links

Rotamer libraries in the 21st century.

Dunbrack RL Jr.

Institute for Cancer Research, Fox Chase Cancer Center, 7701 Burholme Avenue, Philadelphia PA 19111, USA. RL_Dunbrack@fccc.edu

Rotamer libraries are widely used in protein structure prediction, protein design, and structure refinement. As the size of the structure data base has increased rapidly in recent years, it has become possible to derive well-refined rotamer libraries using strict criteria for data inclusion and for studying dependence of rotamer populations and dihedral angles on local structural features.

PMID: 12163064 [PubMed - indexed for MEDLINE]

ReviewCombinatorial protein design. [Curr Opin Struct Biol. 2002]
CAP: conformation angles package-displaying the conformation angles of side chains in proteins. [Bioinformatics. 2003]
ReviewKnowledge-based potential functions in protein design. [Curr Opin Struct Biol. 2002]
Using information theory to discover side chain rotamer classes: analysis of the effects of local backbone structure. [Pac Symp Biocomput. 1999]
Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. [Nat Struct Biol. 1994]

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