UniSTS

UniSTS:42512	Links
RH68551
Bos taurus chromosome 5, locus COL2A1
Canis familiaris chromosome 27, locus COL2A1
Equus caballus chromosome 6, locus COL2A1
Homo sapiens chromosome 12, loci HNRNPM and COL2A1
Macaca mulatta chromosome 11, locus LOC704851
Pan troglodytes chromosome 12, locus COL2A1
Found by e-PCR in sequences from Bos taurus, Canis familiaris, Homo sapiens, Ovis aries, Pan troglodytes and Sus scrofa.

Primer Information

Forward primer:	`GAATAGCACCATTGTGTAGGAC`
Reverse primer:	`AATGCCCCCTGAGTGAC`
PCR product size:	97 (bp), Homo sapiens
GenBank Accession:	H62235

Bos taurus

Name:	RH68551
Polymorphism info:


Cross References

Gene	GeneID:	407142
	Symbol:	COL2A1
	Description:	collagen, type II, alpha 1
	Position:
UniGene	Bt.21390	Collagen, type II, alpha 1


Mapping Information

RH68551	Sequence Map:	Chr 5	Map Viewer
	Position:	35497934-35498028 (bp)


Electronic PCR results

RefSeq mRNA (2)
NM_001001135.2	4761 .. 4855 (95 bp)
NM_001113224.1	4709 .. 4803 (95 bp)

Genomic (2)
AY743675.1	30219 .. 30313 (95 bp)
CM000181.3	35497934 .. 35498028 (95 bp)

Working Draft phase 1 (from GenBank HTGS division) (2)
AC158832.2	66313 .. 66407 (95 bp)
AC149699.4	172722 .. 172816 (95 bp)

ESTs (5 of 35)[Show All Hits]
AW345461.1	38 .. 132 (95 bp)
AW346355.1	38 .. 132 (95 bp)
AW359137.1	37 .. 131 (95 bp)
AW479345.1	38 .. 132 (95 bp)
BE237541.1	5 .. 99 (95 bp)

BAC-ends (1)
CR805282.1	592 .. 686 (95 bp)

Whole Genome Shotgun sequences (1)
AAFC03056593.1	28420 .. 28514 (95 bp)

Canis familiaris

Name:	RH68551
Polymorphism info:


Cross References

Gene	GeneID:	403826
	Symbol:	COL2A1
	Description:	collagen, type II, alpha 1
	Position:


Mapping Information

RH68551	Sequence Map:	Chr 27	Map Viewer
	Position:	9799082-9799178 (bp)


Electronic PCR results

RefSeq mRNA (1)
NM_001006951.1	4757 .. 4853 (97 bp)

mRNA (1)
AF023169.2	4757 .. 4853 (97 bp)

Genomic (1)
CM000027.2	9799082 .. 9799178 (97 bp)

ESTs (5 of 6)[Show All Hits]
CO599523.1	70 .. 166 (97 bp)
CO600850.1	72 .. 168 (97 bp)
CO619019.1	69 .. 165 (97 bp)
CO631183.1	72 .. 168 (97 bp)
DN879265.1	90 .. 186 (97 bp)

Whole Genome Shotgun sequences (2)
AACN010517532.1	196 .. 292 (97 bp)
AAEX02010867.1	26963 .. 27059 (97 bp)

Equus caballus

Name:	RH68551
Polymorphism info:


Cross References

Gene	GeneID:	791241
	Symbol:	COL2A1
	Description:	collagen, type II, alpha 1
	Position:
UniGene	Eca.5282	Collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dyspl...


Mapping Information

RH68551	Sequence Map:	Chr 6	Map Viewer
	Position:	65628853-65628952 (bp)

Homo sapiens

Name:	RH68551
Also known as:	H62235
Polymorphism info:


Cross References

Gene	GeneID:	1280
	Symbol:	COL2A1
	Description:	collagen, type II, alpha 1
	Position:	12q13.11
Gene	GeneID:	4670
	Symbol:	HNRNPM
	Description:	heterogeneous nuclear ribonucleoprotein M
	Position:	19p13.3-p13.2
UniGene	Hs.408182	Collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dyspl...
	Hs.465808	Heterogeneous nuclear ribonucleoprotein M
	Hs.703845	Transcribed locus


Mapping Information

RH68551	Sequence Map:	Chr 12\|HuRef	Map Viewer
	Position:	45398659-45398755 (bp)

RH68551	Sequence Map:	Chr 12	Map Viewer
	Position:	46653086-46653182 (bp)

RH68551	Sequence Map:	Chr 12\|Celera	Map Viewer
	Position:	47164467-47164563 (bp)

H62235	NCBI RH Map:	Chr 12	Map Viewer
	Position:	357.8 (cR)
	Lod score:	1.14

H62235	GeneMap99-GB4 Map:	Chr 12	Map Viewer
	Position:	211.47 (cR3000)
	Lod score:	0.29
	Reference Interval:	D12S333-D12S325


Electronic PCR results

RefSeq mRNA (2)
NM_033150.2	4713 .. 4809 (97 bp)
NM_001844.4	4920 .. 5016 (97 bp)

mRNA (3)
X06268.1	1217 .. 1313 (97 bp)
BC007252.1	1415 .. 1511 (97 bp)
BC116449.1	4741 .. 4837 (97 bp)

Genomic (5 of 9)[Show All Hits]
X02670.1	278 .. 374 (97 bp)
G06343.1	275 .. 371 (97 bp)
AC004801.2	166049 .. 166145 (97 bp)
CH003459.1	45597020 .. 45597116 (97 bp)
CH003507.1	37685756 .. 37685852 (97 bp)

ESTs (5 of 201)[Show All Hits]
R06403.1	72 .. 168 (97 bp)
R09767.1	61 .. 157 (97 bp)
R64593.1	59 .. 155 (97 bp)
R92016.1	32 .. 128 (97 bp)
R92693.1	37 .. 133 (97 bp)

Whole Genome Shotgun sequences (4)
AADD01123681.1	14312 .. 14408 (97 bp)
AADC01105170.1	83093 .. 83189 (97 bp)
AADB02014854.1	39708 .. 39804 (97 bp)
ABBA01031473.1	83813 .. 83909 (97 bp)

Macaca mulatta

Name:	RH68551
Polymorphism info:


Cross References

Gene	GeneID:	704851
	Symbol:	LOC704851
	Description:	similar to alpha 1 type II collagen isoform 1
	Position:
UniGene	Mmu.16004	Similar to alpha 1 type II collagen isoform 1


Mapping Information

RH68551	Sequence Map:	Chr 11	Map Viewer
	Position:	45045844-45045940 (bp)

Ovis aries


Polymorphism info:


Cross References

UniGene

Oar.5020

Transcribed locus, strongly similar to NP_037061.1 procollagen, type II, alp...


Electronic PCR results

ESTs (2)
DY487766.1	110 .. 205 (96 bp)
EE794584.1	303 .. 398 (96 bp)

Pan troglodytes

Name:	RH68551
Polymorphism info:


Cross References

Gene	GeneID:	451860
	Symbol:	COL2A1
	Description:	collagen, type II, alpha 1
	Position:


Mapping Information

RH68551	Sequence Map:	Chr 12	Map Viewer
	Position:	41763511-41763607 (bp)


Electronic PCR results

RefSeq mRNA (5 of 6)[Show All Hits]
XM_509026.2	4904 .. 5000 (97 bp)
XM_001161825.1	4713 .. 4809 (97 bp)
XM_001161790.1	4688 .. 4784 (97 bp)
XM_001161566.1	4785 .. 4881 (97 bp)
XM_001161752.1	4979 .. 5075 (97 bp)

Genomic (1)
CM000326.1	41763511 .. 41763607 (97 bp)

Whole Genome Shotgun sequences (2)
AADA01056336.1	8375 .. 8471 (97 bp)
AACZ02134197.1	33625 .. 33721 (97 bp)

Sus scrofa


Polymorphism info:


Cross References

UniGene

Ssc.51118

Transcribed locus, strongly similar to NP_149162.1 alpha 1 type II collagen ...


Electronic PCR results

ESTs (5 of 199)[Show All Hits]
CK450832.1	72 .. 168 (97 bp)
CK459619.1	551 .. 647 (97 bp)
CK459968.1	75 .. 171 (97 bp)
CN166132.1	73 .. 169 (97 bp)
DN120768.1	473 .. 569 (97 bp)

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