29642 |
cd00552 |
RaiA |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD). |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,... |
true |
false |
true |
93 |
1e-21 |
96.35 |
100.00 |
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
local 2 NLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEKdkRQKAEITLHLKGKDIFVESANGDMYAAIDL 81
cd00552 1 NINITGRNIEVTDALREYVEEKLEKLEKYFDRIISVDVVLSVEKNHGK--RFKVEITIHLPGGVLRAEASAEDLYAAIDL 78
|
90
....*....|....*
local 82 LIDKLDRQVVKHMER 96
cd00552 79 AVDKLERQLRKYKEK 93
|
|
cl00250 |
119661 |
RaiA |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD). |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,... |
0 |
111387 |
pfam02482 |
Ribosomal_S30AE |
Sigma 54 modulation protein / S30EA ribosomal protein |
Sigma 54 modulation protein / S30EA ribosomal protein |
false |
false |
false |
94 |
5e-23 |
100.79 |
100.00 |
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
local 2 NLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHkekdkRQKAEITLHLKGKDIFVESANGDMYAAIDL 81
pfam02482 1 QLNISGKHVEITDALREYVEDKLAKLEKYFDQIISVDVVLSKEGN-----GFRAEATLHLPGGVIRASADSEDMYAAIDL 75
|
90
....*....|....*....
local 82 LIDKLDRQVVKHMERLQTH 100
pfam02482 76 ASDKLERQLRKYKDKLKDH 94
|
|
cl00250 |
119661 |
RaiA |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD). |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,... |
-1 |
31733 |
COG1544 |
COG1544 |
Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis] |
Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis] |
false |
false |
false |
110 |
1e-20 |
92.99 |
100.00 |
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
local 1 MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEkdkRQKAEITLHLKGKDIFVESANGDMYAAID 80
COG1544 1 MKLNISGKNVEITEAIREYVEEKLAKLERYFDDIINVDVTLSKEKNRS---RFKVEATIHLPGGILRAEAEHEDMYAAID 77
|
90 100 110
....*....|....*....|....*....|...
local 81 LLIDKLDRQVVKHMERLQTHAHEPLKHQQAAEQ 113
COG1544 78 LAIDKLERQLRKHKEKLKDHRRAKVSKEEAFAV 110
|
|
cl00250 |
119661 |
RaiA |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD). |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,... |
-1 |
104570 |
PRK10470 |
PRK10470 |
putative sigma(54) modulation protein; Provisional |
putative sigma(54) modulation protein; Provisional |
false |
false |
false |
95 |
2e-15 |
75.73 |
100.00 |
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
local 1 MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKekdkrQKAEITLHLKGKDIFVESANGDMYAAID 80
PRK10470 1 MQLNITGHNVEITEALREFVTTKFAKLEQYFDRINQVYVVLKVEKVT-----HISDATLHVNGGEIHASAEGQDMYAAID 75
|
90 100
....*....|....*....|
local 81 LLIDKLDRQVVKHMERLQTH 100
PRK10470 76 GLIDKLARQLTKHKDKLKQH 95
|
|
cl00250 |
119661 |
RaiA |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD). |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,... |
-1 |
104462 |
PRK10324 |
PRK10324 |
translation inhibitor protein RaiA; Provisional |
translation inhibitor protein RaiA; Provisional |
false |
false |
false |
112 |
9e-06 |
43.57 |
77.68 |
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
local 1 MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTvdnhkEKDKRQKAEITLHLKGKDIFVESANGDMYAAID 80
PRK10324 1 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILS-----KEPQGFVADATINTPNGVLVASGKHEDMYTAIN 75
|
90
....*....|..
local 81 LLIDKLDRQVVK 92
PRK10324 76 ELINKLERQLNK 87
|
|
cl00250 |
119661 |
RaiA |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD). |
RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,... |
-1 |