BLASTP 2.0.8 [Jan-05-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= YER042W MXR1, Chr V from 234936-235490 (184 letters) Database: nr 361,503 sequences; 110,384,460 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|731458|sp|P40029|PMSR_YEAST PUTATIVE PEPTIDE METHIONINE SULF... 393 e-109 gi|2621609 (AE000836) peptide methionine sulfoxide reductase [M... 132 2e-30 gi|1351620|sp|Q09859|PMSR_SCHPO PUTATIVE PEPTIDE METHIONINE SUL... 127 7e-29 gi|3322932 (AE001238) protein-methionine-S-oxide reductase (msr... 120 7e-27 gi|3914383|sp|O25011|PMSR_HELPY PEPTIDE METHIONINE SULFOXIDE RE... 118 2e-26 gi|4154731 (AE001459) putative PEPTIDE METHIONINE SULFOXIDE RED... 118 3e-26 gi|3252888 (AF053709) peptide methionine sulfoxide reductase; M... 115 2e-25 gi|1351814|sp|P45213|YE55_HAEIN HYPOTHETICAL PROTEIN HI1455 >gi... 115 3e-25 gi|1709691|sp|P54152|PMSR_FRAAN PEPTIDE METHIONINE SULFOXIDE RE... 112 1e-24 gi|2851410|sp|P35593|PMSR_STRPN PEPTIDE METHIONINE SULFOXIDE RE... 112 2e-24 gi|1709692|sp|P54153|PMSR_LYCES PEPTIDE METHIONINE SULFOXIDE RE... 110 6e-24 gi|1136793|emb|CAA62760| (X91486) PMSR protein [Brassica napus] 110 7e-24 gi|256628|bbs|115001 (S44898) E4=fruit-ripening gene [tomatoes,... 109 1e-23 gi|1709690|sp|P54151|PMSR_BRANA PEPTIDE METHIONINE SULFOXIDE RE... 109 2e-23 gi|3097813 (L49465) putative methionine sulfoxide reductase [Ps... 108 3e-23 gi|1351572|sp|P47648|PMSR_MYCGE PUTATIVE PEPTIDE METHIONINE SUL... 108 4e-23 gi|2499565|sp|P75188|PMSR_MYCPN PUTATIVE PEPTIDE METHIONINE SUL... 107 5e-23 gi|1709687|sp|P54150|PMSR_ARATH PEPTIDE METHIONINE SULFOXIDE RE... 105 2e-22 gi|1709689|sp|P54149|PMSR_BOVIN PEPTIDE METHIONINE SULFOXIDE RE... 105 2e-22 gi|2580591 (AF003940) putative gonococcal sensor kinase [Neisse... 105 2e-22 gi|130211|sp|P14930|PMSR_NEIGO PEPTIDE METHIONINE SULFOXIDE RED... 102 2e-21 gi|1651888|gnl|PID|d1017548 (D90900) peptide methionine sulfoxi... 102 2e-21 gi|1877262|emb|CAB07043| (Z92770) hypothetical protein Rv0137c ... 102 2e-21 gi|1651696|gnl|PID|d1017357 (D90899) peptide methionine sulfoxi... 101 3e-21 gi|130364|sp|P27110|PMSR_ECOLI PEPTIDE METHIONINE SULFOXIDE RED... 92 3e-18 gi|3881930|emb|CAA10143| (AJ012716) protein-methionine-s-oxide ... 91 4e-18 gi|321859|pir||JC1317 protein-methionine-S-oxide reductase (EC ... 88 5e-17 gi|1709688|sp|P54154|PMSR_BACSU PUTATIVE PEPTIDE METHIONINE SUL... 82 2e-15 gi|1947138 (AF000264) similar to drosophilia ecdysone-induced p... 72 3e-12 gi|119251|sp|P08761|EI28_DROME ECDYSONE-INDUCED PROTEIN 28/29 K... 68 3e-11 gi|7937|emb|CAA28205| (X04521) put. Eip 28 (aa 1-255) [Drosophi... 68 3e-11 gi|311724|emb|CAA27658| (X04024) EIP29 [Drosophila melanogaster] 67 8e-11 gi|629355|pir||S46920 transcription repressor - Mycoplasma capr... 54 7e-07 >gi|731458|sp|P40029|PMSR_YEAST PUTATIVE PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1077651|pir||S50545 hypothetical protein YER042w - yeast (Saccharomyces cerevisiae) >gi|603275 (U18796) Yer042wp [Saccharomyces cerevisiae] Length = 184 Score = 393 bits (1000), Expect = e-109 Identities = 184/184 (100%), Positives = 184/184 (100%) Query: 1 MSSLISKTIKYDPAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPS 60 MSSLISKTIKYDPAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPS Sbjct: 1 MSSLISKTIKYDPAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPS 60 Query: 61 SVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGL 120 SVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGL Sbjct: 61 SVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGL 120 Query: 121 FAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYACPTHY 180 FAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYACPTHY Sbjct: 121 FAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYACPTHY 180 Query: 181 LREM 184 LREM Sbjct: 181 LREM 184 >gi|2621609 (AE000836) peptide methionine sulfoxide reductase [Methanobacterium thermoautotrophicum] Length = 169 Score = 132 bits (328), Expect = 2e-30 Identities = 69/155 (44%), Positives = 95/155 (60%), Gaps = 10/155 (6%) Query: 20 TLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQ 79 T GCFWG E +RK D +V +VGY G ++P+ Y+ VC G T AEV++ Sbjct: 11 TFGAGCFWGVEDAFRKV--DGVVSTRVGYMGGH---LENPT---YEDVCTGLTGHAEVVE 62 Query: 80 VSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE--E 137 V+++P V+ +L D F+ IHDPTT N QGPD G QYRS +F HSD + + + E Sbjct: 63 VTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLE 122 Query: 138 WQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQ 172 ++ ++I T IEP FY+AEEYHQ YL+KNP+ Sbjct: 123 ESGRFRDRIVTAIEPAGTFYEAEEYHQQYLEKNPR 157 >gi|1351620|sp|Q09859|PMSR_SCHPO PUTATIVE PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1044931|emb|CAA91427| (Z66525) unknown [Schizosaccharomyces pombe] Length = 187 Score = 127 bits (315), Expect = 7e-29 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 10/164 (6%) Query: 17 KLITLACGCFWGTEHMY-RKYLNDR-IVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDF 74 ++ +A GCFWG + +Y RK++ I+ VGY G + +YK VC T+ Sbjct: 2 QIAIIAAGCFWGVQEVYLRKFIPAAAILKTSVGYTGG------ITADPTYKEVCTNTTNH 55 Query: 75 AEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKI 134 AE L++ ++ K+ + ++ +FFF +HDPTTSN QG D GTQYRS +F + ++ Sbjct: 56 AEALKIEFDEKLTSYDKIIEFFFAMHDPTTSNQQGNDIGTQYRSAIFTTNPEQATIAKRV 115 Query: 135 KEEWQPKW--GNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYAC 176 E Q K KI T I P ++DAE+YHQLYL+KNP GY C Sbjct: 116 MNEVQAKHYPNKKIVTQILPAGKWWDAEDYHQLYLEKNPDGYRC 159 >gi|3322932 (AE001238) protein-methionine-S-oxide reductase (msrA) [Treponema pallidum] Length = 291 Score = 120 bits (298), Expect = 7e-27 Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 10/171 (5%) Query: 6 SKTIKYDPAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYK 65 S +++ ++ A GCFW TE +R+ ++ +VGY G + S +Y+ Sbjct: 116 SAALRFVAREEGTALFAAGCFWSTEAYFRRVKG--VLRVRVGYTGG------TTKSPTYR 167 Query: 66 RVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSD 125 VC G T AE +++ ++P+VI+ +L FFR+HDPT+ N QG D GTQYRS +F S Sbjct: 168 NVCTGTTGHAEAVEILFDPQVISYEDLLKHFFRMHDPTSLNKQGGDVGTQYRSAIFYLSG 227 Query: 126 ADLKELAKIKEEW--QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 ++ + + K+ + T +E ++FY AEEYHQ YL KNP GY Sbjct: 228 TQKQQAETLMGRYAGAGKFTRPLVTTLEEARDFYPAEEYHQDYLTKNPGGY 278 >gi|3914383|sp|O25011|PMSR_HELPY PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|2313314 (AE000542) peptide methionine sulfoxide reductase (msrA) [Helicobacter pylori 26695] Length = 359 Score = 118 bits (294), Expect = 2e-26 Identities = 65/166 (39%), Positives = 102/166 (61%), Gaps = 12/166 (7%) Query: 10 KYDPAKDKLITLACGCFWGTE-HMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVC 68 ++ +++I LA GCFWG E +M R Y ++D GYANG+ S S +Y+++ Sbjct: 29 QHQKTDERVIYLAGGCFWGLEAYMERIY---GVIDASSGYANGKTS------STNYEKL- 78 Query: 69 GGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADL 128 ++D AE ++V Y+PK I+L +L ++F++ DP + N QG D G QYR+G++ + AD Sbjct: 79 -HESDHAESVKVIYDPKKISLDKLLRYYFKVVDPVSVNKQGNDVGRQYRTGIYYVNSADK 137 Query: 129 KELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 + + + Q + KIA +EP+KN+ AEEYHQ YL K+P GY Sbjct: 138 EVIDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKHPSGY 183 >gi|4154731 (AE001459) putative PEPTIDE METHIONINE SULFOXIDE REDUCTASE [Helicobacter pylori J99] Length = 359 Score = 118 bits (293), Expect = 3e-26 Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 12/166 (7%) Query: 10 KYDPAKDKLITLACGCFWGTE-HMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVC 68 K +++I LA GCFWG E +M R Y ++D GYANG+ S S +Y+++ Sbjct: 29 KLPKTDERVIYLAGGCFWGLEAYMERIY---GVIDASSGYANGKTS------STNYEKL- 78 Query: 69 GGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADL 128 ++D AE ++V Y+PK I+L +L ++F++ DP + N QG D G QYR+G++ + AD Sbjct: 79 -HESDHAESVKVIYDPKKISLDKLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADK 137 Query: 129 KELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 + + + Q + KIA +EP+KN+ AEEYHQ YL K+P GY Sbjct: 138 EVIDNALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKKHPGGY 183 >gi|3252888 (AF053709) peptide methionine sulfoxide reductase; MsrA [Helicobacter pylori] Length = 359 Score = 115 bits (285), Expect = 2e-25 Identities = 63/166 (37%), Positives = 101/166 (59%), Gaps = 12/166 (7%) Query: 10 KYDPAKDKLITLACGCFWGTE-HMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVC 68 ++ +++I LA GCFWG E +M R Y ++D GYANG+ S S +Y+++ Sbjct: 29 QHQKTDERVIYLAGGCFWGLEAYMERIY---GVIDASSGYANGKTS------STNYEKL- 78 Query: 69 GGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADL 128 ++D AE ++V Y+PK I+L +L ++F++ DP + N QG D G QYR+G++ + D Sbjct: 79 -HESDHAESVKVIYDPKKISLDKLLRYYFKVVDPVSVNKQGNDVGRQYRTGIYYVNSTDK 137 Query: 129 KELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 + + + Q + KIA +EP+KN+ AE+YHQ YL K+P GY Sbjct: 138 EVIDNALKALQKEVKGKIAIEVEPLKNYVRAEKYHQDYLKKHPGGY 183 >gi|1351814|sp|P45213|YE55_HAEIN HYPOTHETICAL PROTEIN HI1455 >gi|1074087|pir||E64124 fimbrial transcription regulation repressor (pilB) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1574293 (U32823) peptide methionine sulfoxide reductase (msrA) [Haemophilus influenzae Rd] Length = 353 Score = 115 bits (284), Expect = 3e-25 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 10/156 (6%) Query: 19 ITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVL 78 I LA GCFWG E Y + ++ + D GYANG K SY+ + G TD AE + Sbjct: 45 IYLAGGCFWGME-AYMERIHG-VKDAISGYANGNTEK------TSYQMI--GLTDHAETV 94 Query: 79 QVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEW 138 +V+Y+ I+L +L ++F++ DPT+ N QG D+G QYR+G++ AD + + + Sbjct: 95 KVTYDANQISLDKLLKYYFKVIDPTSVNKQGNDRGRQYRTGIYYQDGADKAVIGQALAQL 154 Query: 139 QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 Q K+ + ++P+KN+ AEEYHQ YL KNP GY Sbjct: 155 QTKYKKPVQIEVQPLKNYIVAEEYHQDYLKKNPNGY 190 >gi|1709691|sp|P54152|PMSR_FRAAN PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) (FRUIT-RIPENING PROTEIN E4) >gi|1310665|emb|CAA93442| (Z69596) methionine sulfoxide reductase [Fragaria x ananassa] Length = 185 Score = 112 bits (278), Expect = 1e-24 Identities = 60/154 (38%), Positives = 91/154 (58%), Gaps = 9/154 (5%) Query: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76 +L A GCFWG+E +++ + ++ +VGY+ G + Y+ VC G T+ +E Sbjct: 18 ELAQFASGCFWGSELRFQRVVG--VIKTEVGYSQGHVHDPN------YRLVCSGTTNHSE 69 Query: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136 V++V ++P+V +L F+ HDPTT N QG D GTQYRSG++ +++ K KE Sbjct: 70 VVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKE 129 Query: 137 EWQPKWGNK-IATVIEPIKNFYDAEEYHQLYLDK 169 Q ++ +K + T I P K FY AEEYHQ YL+K Sbjct: 130 AKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEK 163 >gi|2851410|sp|P35593|PMSR_STRPN PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) (EXPORTED PROTEIN 3) >gi|1498296 (U41735) peptide methionine sulfoxide reductase [Streptococcus pneumoniae] Length = 312 Score = 112 bits (277), Expect = 2e-24 Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 10/156 (6%) Query: 19 ITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVL 78 I LA GCFWG E + + +++ GYANG+ + +Y+ + +TD AE + Sbjct: 4 IYLAGGCFWGLEEYFSRISG--VLETSGGYANGQVE------TTNYQLL--EETDHAEAV 53 Query: 79 QVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEW 138 +V + K ++LRE+ ++FR+ DP + N QG D+G QYR+G++ +ADL + + +E Sbjct: 54 RVICDEKGVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQ 113 Query: 139 QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 + G KIA +E ++++ AE+YHQ YL KNP GY Sbjct: 114 ERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGY 149 >gi|1709692|sp|P54153|PMSR_LYCES PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) (FRUIT-RIPENING PROTEIN E4) >gi|100204|pir||JQ0988 DNA-binding E4 protein - Tomato Length = 196 Score = 110 bits (273), Expect = 6e-24 Identities = 59/149 (39%), Positives = 84/149 (55%), Gaps = 9/149 (6%) Query: 22 ACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVS 81 A GCFWG E +++ +V +VGY+ G + +YK +C G T+ AE +++ Sbjct: 34 AAGCFWGVELAFQRV--GGVVKTEVGYSQG------NVHDPNYKLICSGTTEHAEAIRIQ 85 Query: 82 YNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPK 141 ++P V L F+ HDPTT N QG D G QYRSG++ ++DA + + E Q + Sbjct: 86 FDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKE 145 Query: 142 W-GNKIATVIEPIKNFYDAEEYHQLYLDK 169 + KI T I P K FY AEEYHQ YL+K Sbjct: 146 FMDKKIVTEILPAKRFYRAEEYHQQYLEK 174 >gi|1136793|emb|CAA62760| (X91486) PMSR protein [Brassica napus] Length = 257 Score = 110 bits (272), Expect = 7e-24 Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 8/146 (5%) Query: 24 GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYN 83 GCFWG E Y++ + +VGY++G D+PS Y+ VC T E+++V Y+ Sbjct: 98 GCFWGAELAYQRVPG--VTKTEVGYSHGFV---DNPS---YEDVCSETTGHNEIVRVQYD 149 Query: 84 PKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWG 143 PK ++ L D F++ HDPTT N QG D GT+YRSG++ ++D K + E+ Q Sbjct: 150 PKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILN 209 Query: 144 NKIATVIEPIKNFYDAEEYHQLYLDK 169 KI T I P FY AE YHQ YL K Sbjct: 210 RKIVTEILPATKFYRAENYHQQYLAK 235 >gi|256628|bbs|115001 (S44898) E4=fruit-ripening gene [tomatoes, Peptide, 196 aa] [Lycopersicon esculentum] Length = 196 Score = 109 bits (271), Expect = 1e-23 Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 9/149 (6%) Query: 22 ACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVS 81 A GCFWG E +++ +V +VGY+ G + +YK +C G T+ AE +++ Sbjct: 34 AAGCFWGVELAFQRV--GGVVKTEVGYSQG------NVHDPNYKLICSGTTEHAEAIRIQ 85 Query: 82 YNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPK 141 ++P V L F+ HDPTT N QG D G QYRSG++ + DA + + E Q + Sbjct: 86 FDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYMDAQAQLARESLEAKQKE 145 Query: 142 W-GNKIATVIEPIKNFYDAEEYHQLYLDK 169 + KI T I P K FY AEEYHQ YL+K Sbjct: 146 FMDKKIVTEILPAKRFYRAEEYHQQYLEK 174 >gi|1709690|sp|P54151|PMSR_BRANA PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1076454|pir||S55365 probable peptide methionine sulfoxide reductase - rape >gi|853739|emb|CAA88538| (Z48619) peptide methionine sulfoxide reductase [Brassica napus] >gi|1143406|emb|CAA63919| (X94225) methionine sulfoxide reductase [Brassica napus] Length = 257 Score = 109 bits (269), Expect = 2e-23 Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 8/146 (5%) Query: 24 GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYN 83 GCFWG E Y++ + +VGY++G D+P+ Y+ VC T E+++V Y+ Sbjct: 98 GCFWGAELAYQRVPG--VTKTEVGYSHGFV---DNPT---YEDVCSETTGHNEIVRVQYD 149 Query: 84 PKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWG 143 PK ++ L D F++ HDPTT N QG D GT+YRSG++ ++D K + E+ Q Sbjct: 150 PKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILN 209 Query: 144 NKIATVIEPIKNFYDAEEYHQLYLDK 169 KI T I P FY AE YHQ YL K Sbjct: 210 RKIVTEILPATKFYRAENYHQQYLAK 235 >gi|3097813 (L49465) putative methionine sulfoxide reductase [Pseudomonas fluorescens] Length = 209 Score = 108 bits (267), Expect = 3e-23 Identities = 59/166 (35%), Positives = 93/166 (55%), Gaps = 16/166 (9%) Query: 21 LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQV 80 LA GCFWG + + R+Y ++ +VGY G D P++ +Y+ + AE +++ Sbjct: 10 LAGGCFWGMQDLLRRYPG--VLHTRVGYTGG-----DVPNA-TYRN----HGNHAEAIEI 57 Query: 81 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLF--AHSDADLKELAKIKEEW 138 ++P VI+ R++ +FFF+IHDP+T N QG D G YRS ++ D+ E + Sbjct: 58 VFDPAVISYRQILEFFFQIHDPSTPNRQGNDLGPSYRSAIYYLNEQQRDIAEDTAADVDA 117 Query: 139 QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYACPTHYLREM 184 W ++ T IEP F++AE HQ YL++ P GY C H++R M Sbjct: 118 SHLWPGRVVTEIEPAGPFWEAEPEHQDYLERIPNGYTC--HFIRRM 161 >gi|1351572|sp|P47648|PMSR_MYCGE PUTATIVE PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1361759|pir||B64245 pilin repressor pilB homolog MG408 - Mycoplasma genitalium (SGC3) >gi|3845001 (U39723) peptide methionine sulfoxide reductase (pmsR) [Mycoplasma genitalium] Length = 157 Score = 108 bits (266), Expect = 4e-23 Identities = 63/158 (39%), Positives = 87/158 (54%), Gaps = 8/158 (5%) Query: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76 K I GCFWG E ++ L + VGY N S+ +PS Y++VC G T+ E Sbjct: 2 KEIYFGGGCFWGIEKYFQ--LIKGVKKTSVGYLN---SRIRNPS---YEQVCSGYTNAVE 53 Query: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136 ++V Y K I+L EL + F + DPT N QG D GTQYR+G++ +D K + Sbjct: 54 AVKVEYEEKEISLSELIEALFEVIDPTIRNRQGNDIGTQYRTGIYWTDSSDEKIINDKFL 113 Query: 137 EWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 + Q + I T + ++N+Y AEEYHQ YL KNP GY Sbjct: 114 KLQKNYSKPIVTENKKVENYYLAEEYHQDYLKKNPNGY 151 >gi|2499565|sp|P75188|PMSR_MYCPN PUTATIVE PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|2146488|pir||S73561 peptide methionine sulfoxide reductase pmsR - Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1673902 (AE000023) Mycoplasma pneumoniae, peptide methionine sulfoxide reductase; similar to Swiss-Prot Accession Number P27110, from E. coli [Mycoplasma pneumoniae] Length = 157 Score = 107 bits (265), Expect = 5e-23 Identities = 61/158 (38%), Positives = 86/158 (53%), Gaps = 8/158 (5%) Query: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76 K I GCFWGT+ + L + VGY N S +P+ Y++VC G T+ E Sbjct: 2 KQIYFGGGCFWGTQKYFD--LIKGVQKTSVGYLN---SNMKNPT---YEQVCSGQTNAVE 53 Query: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136 + V Y+ ++L EL D FF++ DPT N QG D GTQYR+G++ D + + + Sbjct: 54 AVFVEYDENKVSLNELIDAFFKVIDPTIRNRQGNDIGTQYRTGVYWVDPQDEQLITQKFR 113 Query: 137 EWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 E Q + I T ++N++ AEEYHQ YL KNP GY Sbjct: 114 ELQANYPKPIVTENRAMENYFLAEEYHQDYLKKNPHGY 151 >gi|1709687|sp|P54150|PMSR_ARATH PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|2129643|pir||S71275 methionine sulfoxide reductase - Arabidopsis thaliana >gi|1279212|emb|CAA65991| (X97326) methionine sulfoxide reductase [Arabidopsis thaliana] Length = 258 Score = 105 bits (260), Expect = 2e-22 Identities = 60/146 (41%), Positives = 81/146 (55%), Gaps = 8/146 (5%) Query: 24 GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYN 83 GCFWG E Y++ + +VGY++G +PSS + VC G T EV++V Y+ Sbjct: 99 GCFWGVELAYQRVPG--VTKTEVGYSHGIVH---NPSS---EDVCTGTTGHNEVVRVQYD 150 Query: 84 PKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWG 143 PK + L D F+ HDPTT N QG D GTQYRSG++ ++D + + E+ Q Sbjct: 151 PKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILN 210 Query: 144 NKIATVIEPIKNFYDAEEYHQLYLDK 169 +I T I P FY AE YHQ YL K Sbjct: 211 KRIVTEILPATKFYRAENYHQQYLAK 236 >gi|1709689|sp|P54149|PMSR_BOVIN PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1205993 (U37150) peptide methionine sulfoxide reductase [Bos taurus] Length = 233 Score = 105 bits (259), Expect = 2e-22 Identities = 60/173 (34%), Positives = 87/173 (49%), Gaps = 12/173 (6%) Query: 6 SKTIKYDPAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYK 65 ++T++ P ++ GCFWG E + + + +VG+A G +YK Sbjct: 53 NRTVEPFPEGTQMAVFGMGCFWGAERKF--WTLKGVYSTQVGFAGGYTPNP------TYK 104 Query: 66 RVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSD 125 VC G T AEV++V + P+ I+ EL F+ HDPT QG D G+QYRS ++ S Sbjct: 105 EVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSA 164 Query: 126 ADLKELAKIKEEWQPKWGNK----IATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 + K KE++Q I T I + FY AE+YHQ YL K+P GY Sbjct: 165 EHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDGY 217 >gi|2580591 (AF003940) putative gonococcal sensor kinase [Neisseria meningitidis] Length = 351 Score = 105 bits (259), Expect = 2e-22 Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 6/127 (4%) Query: 48 YANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNS 107 YANG +K S VSY+ T AE ++V+Y+ ++L ++ +FFR+ DPT+ N Sbjct: 227 YANGN-TKNPSYEDVSYRH-----TGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNK 280 Query: 108 QGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYL 167 QG D GTQYRSG++ A+ +A + Q K+ + EP+KNFYDAEEYHQ YL Sbjct: 281 QGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYL 340 Query: 168 DKNPQGY 174 KNP GY Sbjct: 341 IKNPNGY 347 >gi|130211|sp|P14930|PMSR_NEIGO PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|78127|pir||S02018 regulatory protein pilB - Neisseria gonorrhoeae >gi|44839|emb|CAA32146| (X13966) pilB gene product (AA 1-521) [Neisseria gonorrhoeae] Length = 521 Score = 102 bits (252), Expect = 2e-21 Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 6/127 (4%) Query: 48 YANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNS 107 YANG ++ S VSY+ T AE ++V+Y+ ++L ++ ++FR+ DPT+ N Sbjct: 227 YANGN-TENPSYEDVSYRH-----TGHAETVKVTYDADKLSLDDILQYYFRVVDPTSLNK 280 Query: 108 QGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYL 167 QG D GTQYRSG++ A+ +A + Q K+ + EP+KNFYDAEEYHQ YL Sbjct: 281 QGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYL 340 Query: 168 DKNPQGY 174 KNP GY Sbjct: 341 IKNPNGY 347 >gi|1651888|gnl|PID|d1017548 (D90900) peptide methionine sulfoxide reductase [Synechocystis sp.] Length = 214 Score = 102 bits (252), Expect = 2e-21 Identities = 58/154 (37%), Positives = 87/154 (55%), Gaps = 13/154 (8%) Query: 22 ACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVS 81 A GCFWG E M+ + + D + GY+ G E+ + +Y RV GG TD AE +++ Sbjct: 42 AGGCFWGLEAMFEEVRG--VKDVQTGYSGGTEA------TANYARVSGGGTDHAESIEIV 93 Query: 82 YNPKVITLRELTDFFFRI-HDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKI---KEE 137 Y+P ++ EL FF + HDPT N QG D+G QYRS +FA + + K++A+ + E Sbjct: 94 YDPAQVSYGELLKIFFSVGHDPTQVNRQGVDQGRQYRSAIFA-TTPEQKQVAQAYIDQLE 152 Query: 138 WQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNP 171 + IAT + FY AE+YHQ ++ +NP Sbjct: 153 ESQAFDQAIATEVNDFDAFYPAEDYHQDFVQRNP 186 >gi|1877262|emb|CAB07043| (Z92770) hypothetical protein Rv0137c [Mycobacterium tuberculosis] Length = 182 Score = 102 bits (252), Expect = 2e-21 Identities = 59/165 (35%), Positives = 88/165 (52%), Gaps = 18/165 (10%) Query: 21 LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQV 80 LA GCFWG + + R +V +VGY+ G + + +Y+ AE +++ Sbjct: 9 LAGGCFWGLQDLIRN--QPGVVSTRVGYSGG------NIPNATYRN----HGTHAEAVEI 56 Query: 81 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAK---IKEE 137 ++P V R L +FFF+IHDPTT + QG D+GT YRS +F + D K +A E Sbjct: 57 IFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIF-YFDEQQKRIALDTIADVE 115 Query: 138 WQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYACPTHYLR 182 W K+ T + P +F++AE HQ YL + P GY C H++R Sbjct: 116 ASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTC--HFVR 158 >gi|1651696|gnl|PID|d1017357 (D90899) peptide methionine sulfoxide reductase [Synechocystis sp.] Length = 222 Score = 101 bits (250), Expect = 3e-21 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 20/166 (12%) Query: 24 GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYN 83 GCFWG E + + + VGYA G +Y+ VC G T EV+ V+++ Sbjct: 56 GCFWGAERKFWQIPG--VYSTAVGYAAGYTPNP------TYQEVCTGMTGHNEVVLVAFD 107 Query: 84 PKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWG 143 P+ ++ +L F+ H+PT QG D GTQYRSG++ +S+A + K+ +Q Sbjct: 108 PQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQ 167 Query: 144 ----NKIATVIEPIKNFYDAEEYHQLYLDKNPQGY--------ACP 177 +I T I P +FY AE+YHQ YL KNP GY ACP Sbjct: 168 QAGYGEITTEILPAPDFYYAEDYHQQYLAKNPNGYCGLGGTNVACP 213 >gi|130364|sp|P27110|PMSR_ECOLI PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1361223|pir||S56444 peptide methionine sulfoxide reductase pmsR - Escherichia coli >gi|147305 (M89992) peptide methionine sulfoxide reductase [Escherichia coli] >gi|537060 (U14003) peptide methionine sulfoxide reductase [Escherichia coli] >gi|1790665 (AE000493) peptide methionine sulfoxide reductase [Escherichia coli] Length = 212 Score = 91.7 bits (224), Expect = 3e-18 Identities = 54/163 (33%), Positives = 74/163 (45%), Gaps = 13/163 (7%) Query: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76 ++ A GCFWG E ++ + + GY G +Y+ VC GDT AE Sbjct: 44 EIAIFAMGCFWGVERLFWQLPG--VYSTAAGYTGGYTPNP------TYREVCSGDTGHAE 95 Query: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136 +++ Y+P VI+ +L F+ HDP QG D GTQYRS ++ + E Sbjct: 96 AVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLE 155 Query: 137 EWQPKW-----GNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 +Q I T I FY AE+ HQ YL KNP GY Sbjct: 156 RFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGY 198 >gi|3881930|emb|CAA10143| (AJ012716) protein-methionine-s-oxide reductase [Erwinia chrysanthemi] Length = 213 Score = 91.3 bits (223), Expect = 4e-18 Identities = 55/167 (32%), Positives = 80/167 (46%), Gaps = 13/167 (7%) Query: 13 PAKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDT 72 P ++ A GCFWG E ++ + + GY G +Y+ VC G T Sbjct: 41 PDHMEVAIFAMGCFWGVERLF--WQQPGVYSTASGYCGGYTPNP------TYREVCTGKT 92 Query: 73 DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLF---AHSDADLK 129 AE ++V ++P V++ +L F+ H+P QG D GTQYRS ++ + K Sbjct: 93 GHAEAVRVVFDPAVVSYPQLLQLFWENHNPAQGMRQGNDIGTQYRSAIYTLTTEQETAAK 152 Query: 130 ELAKIKEEWQPKWGN--KIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 E + ++ GN I T I+P FY AE+ HQ YL KNP GY Sbjct: 153 ESYQRFQQAMRDAGNDHDITTEIQPAGPFYYAEDEHQQYLHKNPDGY 199 >gi|321859|pir||JC1317 protein-methionine-S-oxide reductase (EC 1.8.4.6) - Escherichia coli Length = 208 Score = 87.8 bits (214), Expect = 5e-17 Identities = 54/163 (33%), Positives = 75/163 (45%), Gaps = 17/163 (10%) Query: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76 ++ A GCFWG E ++ + + GY G +Y+ VC GDT AE Sbjct: 44 EIAIFAMGCFWGVERLFWQLPG--VYSTAAGYTGGYTPNP------TYREVCSGDTGHAE 95 Query: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136 +++ Y+P VI+ +L F+ HDP +QG D GTQYRS ++ + E Sbjct: 96 AVRIVYDPSVISYEQLLQVFWENHDP----AQGNDHGTQYRSAIYPLTPEQDAAARASLE 151 Query: 137 EWQPKW-----GNKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 +Q I T I FY AE+ HQ YL KNP GY Sbjct: 152 RFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGY 194 >gi|1709688|sp|P54154|PMSR_BACSU PUTATIVE PEPTIDE METHIONINE SULFOXIDE REDUCTASE (PEPTIDE MET(O) REDUCTASE) >gi|1256653 (L77246) DNA-binding protein [Bacillus subtilis] >gi|2634589|emb|CAB14087| (Z99115) similar to peptide methionine sulfoxide reductase [Bacillus subtilis] Length = 177 Score = 82.3 bits (200), Expect = 2e-15 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 14/164 (8%) Query: 15 KDKLITLACGCFWGTEHMYRKYLN-DRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTD 73 K ++ T A GCFW + + +++V GY G +Y+ VC T Sbjct: 4 KKEIATFAGGCFWCMVKPFDEQPGIEKVVS---GYTGGHTENP------TYEEVCSETTG 54 Query: 74 FAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAK 133 E +Q++++P V +L + F++ DPT + Q D+G+ YR+ +F H+D KELA+ Sbjct: 55 HREAVQITFHPDVFPYEKLLELFWQQIDPTDAGGQFADRGSSYRAAIFYHNDKQ-KELAE 113 Query: 134 IKEEWQPKWG---NKIATVIEPIKNFYDAEEYHQLYLDKNPQGY 174 ++ + G + I T I + FY+AE YHQ + KNP Y Sbjct: 114 ASKQRLAESGIFKDPIVTDILKAEPFYEAEGYHQHFYKKNPAHY 157 >gi|1947138 (AF000264) similar to drosophilia ecdysone-induced protein 28/29 KD, EIP22/29 (SP:P08761) [Caenorhabditis elegans] Length = 207 Score = 71.8 bits (173), Expect = 3e-12 Identities = 48/142 (33%), Positives = 76/142 (52%), Gaps = 20/142 (14%) Query: 25 CFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYNP 84 CFWG E + K +V +VGYA G K+ +P+ YK + D E+ +++++P Sbjct: 13 CFWG-ESAWAKLKG--VVVTRVGYAGG---KQPNPT---YKNI----KDHTEITEITFDP 59 Query: 85 KVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGN 144 KVI +LT+FF++ H+P + QY+S + +D K + + + K G+ Sbjct: 60 KVIEYSKLTNFFWKHHNPAERRKK------QYQSAILYVNDDQKKVAEETLKVAKDKHGD 113 Query: 145 KIATVIEPIKNFYDAEEYHQLY 166 I T IEP+ FY AE+YHQ Y Sbjct: 114 -IETYIEPLDKFYQAEDYHQKY 134 >gi|119251|sp|P08761|EI28_DROME ECDYSONE-INDUCED PROTEIN 28/29 KD >gi|84941|pir||A24254 ecdysone-induced protein - fruit fly (Drosophila melanogaster) >gi|8848|emb|CAA41223| (X58286) EIP28 [Drosophila melanogaster] >gi|311723|emb|CAA27657| (X04024) EIP28 [Drosophila melanogaster] Length = 255 Score = 68.3 bits (164), Expect = 3e-11 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 7 KTIKYDPAKDKLITLAC-----GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSS 61 K + P D +T A GCFWG E +Y ++ VGYA G D P+ Sbjct: 25 KELNISPVHDVNVTKATATFGMGCFWGAESLYGATRG--VLRTTVGYAGGSS---DLPT- 78 Query: 62 VSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLF 121 Y+++ D EVL++ Y+P VI+ +EL D F+ H+ + P K QY S L Sbjct: 79 --YRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTT---PIK-RQYAS-LI 127 Query: 122 AHSDADLKELAKIK--EEWQPKWGNKIATVIEPIKNFYDAEEYHQLY 166 + D + K++A EE + + I T I +NFY AE YHQ Y Sbjct: 128 LYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKY 174 >gi|7937|emb|CAA28205| (X04521) put. Eip 28 (aa 1-255) [Drosophila melanogaster] Length = 255 Score = 68.3 bits (164), Expect = 3e-11 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 7 KTIKYDPAKDKLITLAC-----GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSS 61 K + P D +T A GCFWG E +Y ++ VGYA G D P+ Sbjct: 25 KELNISPVHDVNVTKATATFGMGCFWGAESLYGATRG--VLRTTVGYAGGSS---DLPT- 78 Query: 62 VSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLF 121 Y+++ D EVL++ Y+P VI+ +EL D F+ H+ + P K QY S L Sbjct: 79 --YRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTT---PIK-RQYAS-LI 127 Query: 122 AHSDADLKELAKIK--EEWQPKWGNKIATVIEPIKNFYDAEEYHQLY 166 + D + K++A EE + + I T I +NFY AE YHQ Y Sbjct: 128 LYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKY 174 >gi|311724|emb|CAA27658| (X04024) EIP29 [Drosophila melanogaster] Length = 251 Score = 67.1 bits (161), Expect = 8e-11 Identities = 55/167 (32%), Positives = 76/167 (44%), Gaps = 28/167 (16%) Query: 7 KTIKYDPAKDKLITLAC-----GCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSS 61 K + P D +T A GCFWG E +Y ++ VGYA G D P+ Sbjct: 25 KELNISPVHDVNVTKATATFGMGCFWGAESLYGATRG--VLRTTVGYAGGSS---DLPTG 79 Query: 62 VSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLF 121 D EVL++ Y+P VI+ +EL D F+ H+ + P K QY S L Sbjct: 80 -----------DHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTT---PIK-RQYAS-LI 123 Query: 122 AHSDADLKELAKIK--EEWQPKWGNKIATVIEPIKNFYDAEEYHQLY 166 + D + K++A EE + + I T I +NFY AE YHQ Y Sbjct: 124 LYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKY 170 >gi|629355|pir||S46920 transcription repressor - Mycoplasma capricolum (SGC3) (fragment) >gi|530414|emb|CAA83725| (Z33052) transcription repressor [Mycoplasma capricolum] Length = 224 Score = 53.9 bits (127), Expect = 7e-07 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 111 DKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKN 170 D GTQYR+G++ D K + E++ K+ ++ +E +KN+ AE+YHQ YLDKN Sbjct: 2 DVGTQYRTGVYYTDINDKKVIELAFLEYKKKY-DEFYVELEELKNYMTAEDYHQDYLDKN 60 Query: 171 PQGY 174 P GY Sbjct: 61 PTGY 64 Database: nr Posted date: Mar 13, 1999 7:20 PM Number of letters in database: 110,384,460 Number of sequences in database: 361,503 Lambda K H 0.317 0.135 0.416 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45999447 Number of Sequences: 361503 Number of extensions: 1949509 Number of successful extensions: 3989 Number of sequences better than 1.0e-03: 33 Number of HSP's better than 0.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 3909 Number of HSP's gapped (non-prelim): 33 length of query: 184 length of database: 110384460 effective HSP length: 51 effective length of query: 133 effective length of database: 91947807 effective search space: 12229058331 effective search space used: 12229058331 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.6 bits) S2: 101 (43.8 bits)