>COG0003 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0365G VNG7123 MTH1511 MJ1142 MK1680 Ta0437 TVN0026 TVN1056 PAB1555 PAE1427 APE2164 APE2165 YDL100c SPAC1142.06 aq_343 aq_682 FN1537 FN1538 Rv2184c Rv3680 MT2239 MT3782 ML0890 ML2306 pli0037 BH1795 sll0086 slr1794 all2244 all2700 all4481 CLUSTER 2 Rv3679 MT3781 ML2305 >COG0004 (Putative duplication confidence score 0.500) CLUSTER 1 AF0977 AF1746 AF1749 MA3917 MA3918 MA4207 MTH661 MTH663 MJ0058 MJ1343 MK0053 Ta0181a SSO1054 YGR121c YNL142w YPR138c SPAC2E1P3.02c SPAC664.14 SPCPB1C11.01 aq_112 TM0402 DR0693 CAC0682 Cgl1545 Cgl2012 Rv2920c MT2988 L0236 SA1848 lin1551 BS_nrgA BH3834 sll0108 sll0537 sll1017 alr0990 alr0991 alr0992 amtB ZamtB ECs0505 YPO3142 STM0463 PA3039 PA5287 XF1844 NMB0615 NMA0820 RSc0343 AGc5001 SMc03807 BMEI0167 mll4246 CC1338 UU218 UU219 CLUSTER 2 Ta0181m TVN1042 >COG0008 (Putative duplication confidence score 0.548) CLUSTER 1 AF0260 VNG1153G MA0587 MTH51 MJ1377 MK0757 Ta0942 TVN1086 PH1686 PAB0323 PAE2969 SSO0093 APE2317 YGL245w YOR168w SPAC17A5.15c SPBC342.02 ECU02g1210 ECU10g1460 DR2611_1 glnS ZglnS ECs0710 YPO2630 STM0686 BU415 VC0997 PA1794 HI1354 PM0528 XF1338 NMB1560 NMA1748 RSc0791 CLUSTER 2 YOL033w SPAPB1A10.11c aq_1221 TM1351 TM1875 FN1340 DR0485 DR1687 CAC0990 Cgl0237 Cgl1263 Rv2992c MT3070 ML1688 L0349 SPy0239 SP2069 SA0486 lin0269 BS_gltX BH0109 sll0179 all3205 gltX yadB ZgltX ZyadB ECs0148 ECs3278 YPO2984 YPO3398 STM0185 STM2415 BU070 VC0595 VC2214 PA3134 PA4724 HI0274 PM1115 XF0822 NMB0003 NMB0349 NMA0250 NMA2138 RSc1179 RSc2210 HP0476 HP0643 jhp0428 jhp0588 Cj0845c Cj1288c AGl2475 AGl791 SMc00735 SMc03172 BMEI0381 BMEI0837 BMEI0968 mll0813 mlr0628 mlr3479 CC1905 CC2205 RP325 RP623 RC0448 RC0966 CT445 CPn0560 TP0673 BB0372 UU599 MYPU_6820 MPN678 MG462 >COG0014 (Putative duplication confidence score 1.000) CLUSTER 1 MA4100 YOR323c SPAC821.11 aq_1071 TM0293 DR1826 CAC3254 Cgl2303 Rv2427c MT2500 ML1458 L0116 SPy1670 SP0932 lin1227 BS_proA BH1504 sll0373 all2166 proA ZproA ECs0270 YPO3221 STM0322 VC2273 PA4007 HI1239 PM0936 XF1005 NMB1068 NMA1267 RSc2741 Cj0558c AGc5042 SMc03777 BMEI0208 mll4009 CC3430 TP0350 CLUSTER 2 sll0461 alr3995 >COG0017 (Putative duplication confidence score 1.000) CLUSTER 1 AF0920 VNG0461G MA1684 MTH226 MJ1555 MK0710 Ta0519 Ta0946 TVN0996 TVN1090 PH0241 PH1020 PAB0646 PAB2203 PAE0703 PAE2973 SSO0173 APE2192 YCR024c YHR019c YLL018c SPBC1198.10c SPBC1773.10c SPCC1223.07c ECU06g0790 ECU09g1680 FN0040 DR1055 DR1270 CAC2979 CAC3260 CAC3564 L0345 SPy0559 SPy0651 SP1542 SA1287 lin2010 BS_asnS BH1696 sll0495 alr3658 asnS ZasnS ECs1013 YPO1412 STM1000 BU360 VC1297 HI1302 PM0643 XF2563 TP0609 BB0101 UU365 MYPU_7710 MPN252 MG113 CLUSTER 2 Ta0609m TVN0659 PH0270 PAB2356 PAE2557 >COG0019 (Putative duplication confidence score 1.000) CLUSTER 1 AF0800 MA0726 MA2728 MTH1335 MJ1097 MK0483 Ta0788m TVN0806 YKL184w SPAC144.04c aq_1208 aq_728 TM1517 TM1873 DR1758 CAC0608 Cgl1154 Cgl2084_2 Rv1293 MT1332 ML1128 L0121 SP0166 SP1978 SA0119 SA1232 lin2066 BS_lysA BH1544 sll0504 all2997 lysA ZlysA ECs3695 YPO0796 STM2360 STM3013 BU438 VC0125 PA4519 PA5277 HI0727 PM1424 XF1116_2 NMB1976 NMA0468 RSc2979 RSp0424 RSp0679 HP0290 jhp0275 Cj0314 AGc3079 AGl2454 AGl3227 SMc00723 SMc02983 BMEI0084 BMEII1133 mll1584 mll2974 mlr3508 CC0360 CC2213 CLUSTER 2 DR1410 SP0920 BH3958 sll0873 VC1623 PM0371 HP0020 jhp0018 Cj1515c AGl1366 SMb21631 BMEI1589 >COG0020 (Putative duplication confidence score 1.000) CLUSTER 1 AF0707 AF1219 VNG1779C VNG1781C MA1831 MA3723 MA4402 MTH232 MJ1372 MK0767 Ta0546 TVN0600 PH1590 PAB0394 PAE2942 SSO0163 APE1385 YBR002c YMR101c SPAC4D7.04c ECU09g1870 aq_1248 TM1398 FN1326 DR2447 CAC1432 CAC1791 Cgl0966 Cgl2231 Rv1086 Rv2361c MT1118 MT1118.2 MT2430 ML0634 ML2467 L183602 SPy1965 SP0261 SA1103 lin1352 BS_yluA BH2423 sll0506 all2995 all3432 yaeS ZyaeS ECs0176 YPO1049 STM0221 BU236 VC2256 PA3652 HI0920 PM1989 XF1050 NMB0186 NMA0081 RSc1408 HP1221 jhp1142 Cj0824 AGc2550 SMc02097 BMEI0827 mll0640 CC1919 RP425 RC0590 CT450 CPn0566 TP0603 BB0120 CLUSTER 2 YDL193w_2 SPBC2A9.06c >COG0021 (Putative duplication confidence score 0.500) CLUSTER 1 YBR117c YPR074c SPBC2G5.05 ECU06g0120 aq_1765 DR2256 CAC0944 CAC1348 Cgl1536 Rv1449c MT1496 ML0583 L0043 SPy1676 SP2030 SA1177 lin0360 lin1343 lin2809 BS_tkt BH2352 sll1070 alr3344 tktA tktB ZtktA ZtktB ECs3327 ECs3810 YPO0926 STM2474 STM3076 BU094 VC0473 VCA0624 PA0548 HI1023 PM1242 PM1638 XF1936 NMB1457 NMA1669 RSc2750 HP1088 jhp0337 Cj1645 AGl2197 SMb20200 SMc02342 SMc03978 BMEI0311 mlr3749 CC3620 CT750 CPn0893 TP0560 UU586 MYPU_5110 MPN082 MG066 CLUSTER 2 TM1762 all4052 >COG0022 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2218G Ta1437 TVN0101 PAE2646 SSO1370 SSO1526 APE1674 YBR221c SPBC30D10.13c ECU04g1160 DR0030 Rv2496c MT2571 L0034 SPy1028 SP1163 SA0944 SA1347 lin1045 lin1410 BS_acoB BS_bfmBAB BS_pdhB BH0214 BH0777 BH1823 BH2654 BH2762 sll1721 all0122 PA2248 PA3416 PA4151 RSc1798 AGc2638_2 AGl2718 SMb20020_2 SMc01031_2 SMc03202 BMEI0855_2 BMEII0747 mll3628 mll4472 mlr0384_2 CC1727_2 RP262 RC0348 CT246 CT340_2 CPn0033_2 CPn0305 MYPU_7630 MPN392 MG273 CLUSTER 2 BMEII0061_2 BMEII0216_2 >COG0031 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0606G VNG1301G MA2720 Ta0535 TVN0589 PAB0250 PAE1051 SSO0360 APE1223 APE1586 YGR012w YGR155w_1 SPAC3A12.17c SPBC36.04 aq_1556 TM0665 FN1055 FN1220 DR0789 CAC0931 CAC2235 Cgl2085 Cgl2508 Rv0848 Rv1077_1 Rv1336 Rv2334 MT1108_1 MT1377 MT2397 ML0839 ML2396_1 L0088 L0089 SPy1618 SP2210 SA0112 SA0418 SA0471 lin0255 BS_cysK BS_yrhA BS_ytkP BH0088 BH3271 sll0712 slr1842 all1169 all2521 alr4416 alr4552 alr7586 cysK cysM ZcysK ZcysM ECs3286 ECs3292 YPO2992 YPO3011 YPO4018 STM2430 STM2440 BU066 VC0537 VC0968 PA0399_1 PA0932 PA2104 PA2709 HI1103 PM1693 XF0603_1 XF0831 NMB0763 NMA0974 RSc0917 RSp0276 RSp0417 HP0107 jhp0099 Cj0912c AGc2247 AGc543 SMc00421 SMc01174 BMEI0101 BMEI0933 mll4505_1 mll4616 mll9227 mlr0353 mlr4651 mlr9541 CC1426 CC3625 CLUSTER 2 Rv3684 MT3786 YPO3147 STM0458 VC1061 PA1061 XF0128 >COG0044 (Putative duplication confidence score 0.500) CLUSTER 1 AF2250 VNG2533G MA0892 MTH1127 MJ1490 MK0530 Ta1319 TVN0269 PH1963 PAB1149 PAE0322 SSO0611 APE0261 YIR027c aq_806 TM0335 FN0420 DR1106 DR1153 CAC0519 Cgl1573 Rv1381 MT1425 ML0533 L81189 SPy0907 SP1167 SA1044 lin1951 BS_pyrC BS_yunH BH2309 BH2538 sll1018 all2303 alr3339 alr5010 ybbX ygeZ Z0666 Z0667 Z4212 ECs0573 ECs0574 ECs3746 STM0523 PA0401 PA0441 PA5541 XF0988 RSc0679 HP0266 jhp0251 Cj1195c AGc2404 AGc4328 SMa0552 SMc01361 SMc01821 BMEI1281 BMEI1644 BMEII0669 mll1629 mlr0687 mlr7790 CC0388 CC2444 CLUSTER 2 YJL130c_3 SPAC22G7.06c_3 >COG0045 (Putative duplication confidence score 1.000) CLUSTER 1 AF1540 AF2186 VNG1541G MTH1036 MJ0210 MK0731 Ta1332m TVN0274 PAE2312 SSO2483 APE1065 YGR244c SPCC1620.08 aq_1306 aq_1620 DR1247 Cgl2512 Rv0951 MT0978 ML0155 SA1088 BS_sucC BH2470 sll1023 all3914 sucC ZsucC ECs0753 YPO1115 STM0738 VC2085 PA1588 HI1196 PM0280 XF2547 NMB0959 NMA1153 RSc0554 Cj0533 AGc4780 SMc02480 BMEI0138 mll4306 mlr1324 CC0337 RP433 RC0599 CT821 CPn0973 CLUSTER 2 SPAC22A12.16 >COG0055 (Putative duplication confidence score 1.000) CLUSTER 1 MA2441 YJR121w SPAC222.12c aq_2038 TM1610 FN0358 CAC2865 Cgl1185 Rv1310 MT1350 ML1145 L6563 SPy0760 SP1508 SA1905 lin0138 lin2673 BS_atpD BH3754 slr1329 all5039 atpD ZatpD ECs4674 YPO4121 STM3865 BU008 VC2764 PA5554 HI0479 PM1494 XF1143 NMB1934 NMA0519 RSc3317 HP1132 jhp1060 Cj0107 AGc4754 SMc02501 BMEI0251 mll4060 CC3447 RP801 RC1235 UU129 MYPU_2360 MYPU_2660 MPN598 MG399 CLUSTER 2 UU054 MYPU_4500 MYPU_6990 >COG0056 (Putative duplication confidence score 1.000) CLUSTER 1 MA2434 YBL099w SPAC14C4.14 aq_679 TM1612 FN0360 CAC2867 Cgl1183 Rv1308 MT1348 ML1143 L8990 SPy0758 SP1510 SA1907 lin0136 lin2675 BS_atpA BH3756 sll1326 all0005 atpA ZatpA ECs4676 YPO4123 STM3867 BU006 VC2766 PA5556 HI0481 PM1492 XF1145 NMB1936 NMA0517 RSc3319 HP1134 jhp1062 Cj0105 AGc4757 SMc02499 BMEI0249 mll4065 CC3449 RP803 RC1237 UU132_1 MYPU_2680 MPN600 MG401 CLUSTER 2 UU053 MYPU_2350 MYPU_4490 MYPU_7000 >COG0063 (Putative duplication confidence score 1.000) CLUSTER 1 AF0851_2 VNG1272C_2 MA1170_2 MTH1256_2 MJ1586_2 MK0808_2 Ta1451_2 TVN0127_2 PH1950_2 PAB1144_2 PAE2520_2 SSO2254_2 APE2362_2 YKL151c SPCC61.03 ECU03g1390 aq_1365_2 TM0922_2 DR1529_2 CAC0490_2 Cgl0579_2 Rv3433c_2 MT3539_2 ML0373_2 L57608 SA0007 lin1663 BS_yxkO sll1433_2 alr2957_2 yjeF_2 ZyjeF_2 ECs5142_2 YPO0368_2 STM4356_2 VCA0191_2 PA4949_2 XF0757_2 NMB1159 NMB1197 NMA1369 RSc1720_2 HP1363_2 jhp1281_2 Cj0188c_2 AGc3249_2 SMc00946_2 BMEI0977_2 mlr0346_2 CC1965_2 CLUSTER 2 MJ1337 MK0264 >COG0068 (Putative duplication confidence score 1.000) CLUSTER 1 AF1366 MA4161 MTH1287 MJ0713 MK0648 PH0897 PAB1560 aq_672 CAC0810 CAP0146 sll0322 alr0694 hypF ZhypF ECs3568 STM2842 HP0048 jhp0041 Cj0622 CLUSTER 2 MA0506 >COG0069 (Putative duplication confidence score 1.000) CLUSTER 1 AF0953_2 MA4218_2 MTH105_2 MTH1666 MTH194_2 MJ1351_2 MK0550 PAE3444 SSO0684 YDL171c_2 SPAPB1E7.07_2 aq_1565_2 TM0397_2 DR0183_2 CAC1673_2 Cgl0184_2 Rv3859c_2 MT3974_2 ML0061_2 L0119_2 SA0430_2 SA2248 lin1845_2 BS_gltA_2 BS_yerD BH1728_2 sll1499_2 sll1502_2 alr4344_2 gltB_2 ZgltB_2 ECs4091_2 YPO3557_2 STM3330_2 VC2373_2 VC2376_2 PA3602 PA5036_2 XF2710_2 RSc2722 RSc2965_2 Cj0007_2 AGc235_2 AGl1265 AGl2101_2 SMc02612 SMc04028_2 BMEII0040_2 mll3030_2 mll7308 CC3607_2 CLUSTER 2 TM1058 >COG0074 (Putative duplication confidence score 1.000) CLUSTER 1 AF1539 AF2185 VNG1542G MTH563 MJ1246 MK0732 Ta1331 TVN0273 PAE2313 SSO2482 APE1072 YOR142w SPAC16E8.17c SPBC1703.07_1 aq_1622 aq_1888 DR1248 Cgl2511 Rv0952 MT0979 ML0156 SA1089 BS_sucD BH2469 sll1557 all3913 sucD ZsucD ECs0754 YPO1116 STM0739 VC2084 PA1589 HI1197 PM0281 XF2548 NMB0960 NMA1154 RSc0555 Cj0534 AGc4779 SMc02481 BMEI0139 mll4303 mlr1326 CC0338 RP432 RC0598 CT822 CPn0974 CLUSTER 2 fdrA yahF ZfdrA ZyahF ECs0369 ECs0580 STM0529 >COG0075 (Putative duplication confidence score 0.500) CLUSTER 1 AF1417 VNG2418G MA1816 MTH1601 MJ0959 MK0633 Ta1018 TVN0571 PH1308 PAB1801 PAE3321 PAE3447 SSO0906 SSO2597 APE2423 YFL030w aq_1591 aq_1593 TM1400 DR0991 DR1350 DR2465 CAC0014 CAC0221 L86881 SA1544 BS_yurG BH0762 sll1559 alr1004 VC0392 HP0736 jhp0673 AGl3195 SMa1495 SMa2139 mlr1322 mlr6806 CC2604 CLUSTER 2 STM0431 VCA0604 PA1310 SMb21537 >COG0076 (Putative duplication confidence score 1.000) CLUSTER 1 AF1323 AF2004 AF2295 VNG0327G VNG6211G MA0006 MA1949 MTH1116 MJ0050 MK1500 PH0937 PAB1578 APE0020 APE0412 APE2267 YDR294c YMR250w Rv3432c MT3538 L123581 lin2463 lin2528 BH0566 BH2623 sll1641 all0395 gadA gadB ZgadA ZgadB ECs2098 ECs4397 YPO1193 YPO1529 VC1149 VCA0269 HI0946.1 SMa2402 SMb21414 BMEII0910 BMEII0911 mll0712 mlr4653 mlr6209 CLUSTER 2 MJ0610 MK0672 >COG0078 (Putative duplication confidence score 1.000) CLUSTER 1 AF1255 VNG6315G MA3310 MTH1446 MJ0881 MK1070 Ta1330 TVN0272 PH0726 PAB1502 PAE1985 SSO0871 APE1992 YJL088w SPAC4G9.10 aq_1711 TM1097 DR0080 CAC0316 Cgl1006 Cgl1365 Rv1656 MT1694 ML1410 L0108 L0109 L0113 SPy1544 SP2150 SA1012 SA2427 lin1629 BS_argF BH2894 sll0902 alr4907 argF argI ZargI ECs5231 YPO3446 STM4465 STM4469 BU368 VC2508 PA3537 PA5172 HI0596 PM0808 XF0998 NMB1573 NMA1762 RSc2554 Cj0994c AGc755 SMa0695 SMc02137 BMEI1620 mlr5647 CC2242 BB0842 MPN306 CLUSTER 2 ygeW Z4209 ECs3743 >COG0115 (Putative duplication confidence score 1.000) CLUSTER 1 AF0933 VNG0387G VNG2122G MA4349 MTH1430 MJ1008 MK1627 PAE3297 YHR208w YJR148w SPBC19G7.02 SPBC428.02c aq_1606 aq_1893 TM0831 FN1729 DR0195 DR1626 CAC0792 CAC1479 CAC2226 Cgl0800 Cgl0971 Cgl2155 Cgl2526 Rv0812 Rv2210c MT0833 MT2266 ML0866 L0086 L0179_2 SPy0911 SPy1990_2 SP0665_2 SP0856 SA0512 SA0670 SA1571 lin0977 lin1660 lin2893_2 BS_pabC BS_ybgE BS_yheM BS_ywaA BH0092 BH2156 BH2811 slr0032 slr0887 alr1260 ilvE pabC ZilvE ZpabC ECs1474 ECs4704 YPO1603 YPO3899 STM1198 STM3903 VC0029 VC2018 PA2964 PA5013 HI1169 HI1193 PM0566 PM1465 XF0075 XF1999 NMB0337 NMB1970_2 NMA0477_2 NMA2151 RSc0567 RSc2633_2 RSp0714 RSp1327 RSp1358 HP0293_2 HP1468 jhp0278_2 jhp1361 Cj0269c Cj0862c_2 AGc1592 AGc4563 AGl2139 AGpA698 SMa0093 SMc00042 SMc01047 SMc02896 SMc04014 BMEII0014 BMEII0363 BMEII0612 BMEII0613 mll2664 mll9205 mlr0401 mlr1594 mlr3007 mlr7635 CC1744 CC2929 CC2952 RP428 RC0594 CLUSTER 2 YMR289w >COG0119 (Putative duplication confidence score 0.846) CLUSTER 1 AF0219 AF0957 MA1225 MA1226 MA3342 MA3793 MA4264 MA4615 MTH1481 MTH1630 MTH723 MJ0503 MJ1195 MJ1392 MK0275 MK0391 MK1209 TVN0909 PH1727 PAB0286 PAB0890 PAB0894 PAE1330 PAE1986 PAE1993 SSO0127 SSO0977 SSO2407 YDL131w YDL182w SPBC1105.02c aq_2090 aq_356 TM0552 TM0553 DR1238 DR1482 CAC0260 CAC0261 CAC0970 CAC3174 Rv3469c Rv3534c MT3575 MT3638 SP1258 SA0837 SA1862 lin2094 BS_leuA BS_yngG BH1134 BH3058 sll1564 slr0186 alr1407 alr2968 alr3522 alr4840 leuA mhpE ZleuA ZmhpE ECs0078 ECs0407 YPO0533 STM0113 BUpL04 VC2490 PA1217 PA2011 HI0986 PM1962 XF1818 NMB1070 NMA1270 RSc0261 RSc2072 RSp0895 Cj1719c AGl2702 SMb21125 SMc02546 BMEI1270 BMEI1926 mlr7805 CC0467 CC1541 CLUSTER 2 YNL104c YOR108w SPBC3E7.16c CAC0273 Cgl0250 Rv3710 MT3813 ML2324 PA3792 RSp0322 AGc4114 SMc02717 BMEI0451 mlr2792 >COG0125 (Putative duplication confidence score 1.000) CLUSTER 1 AF0061 AF1308 VNG1929G MA4433 MTH1100 MTH1765 MJ0293 MK0101 Ta0081 TVN0173 PH1695 PAB0319 PAE0964 SSO0780 SSO1191 SSO1192 APE2090 YJR057w SPCC70.07c ECU04g1220 aq_969 TM1099 FN1323 DR0111 Cgl0730 Rv3247c MT3345 ML0772 L3846 SPy0399 SP0935 SA0440 lin2841 BS_tmk BH0042 slr0379 all4708 tmk Ztmk ECs1476 YPO1605 STM1200 BU353 VC2016 PA2962 HI0456 PM1673 XF0580 NMB0670 NMA0869 RSc1784 HP1474 jhp1367 Cj0766c AGc2760 SMc01189 BMEI0989 mll0424 CC1824 RP684 RC1047 CT188 CPn0273 TP0354 BB0793 UU020 MYPU_0520 MPN006 MG006 CLUSTER 2 MA2176 >COG0129 (Putative duplication confidence score 0.889) CLUSTER 1 AF1014 MA1802 MA3373 MTH1449 MJ1276 MK1197 PAB0895 PAE0615 SSO3107 APE0013 YJR016c SPAC17G8.06c aq_837 TM0551 DR1132 CAC3170 CAC3604 Cgl1238 Rv0189c MT0199 ML2608 L0077 SP2126 SA1858 lin2090 BS_ilvD BH3062 slr0452 alr2771 ilvD yagF yjhG ZilvD ECs4705 YPO3897 STM3531 STM3904 BU600 VC0028 PA0353 HI0738 PM1625 XF0099 NMB1150 NMB1188 NMA1361 RSc2412 Cj0013 AGc3510 AGc4959 AGl1769 AGl3190 SMa0235 SMb20115 SMb20890 SMc00884 SMc04045 SMc04144 BMEI1848 BMEII0356 mll1102 mll7192 mlr5361 mlr5404 CC0819 CC1421 CC3044 CLUSTER 2 edd Zedd ECs2561 YPO2533 STM1885 VC0288 PA3194 XF1062 NMB1393 NMA1610 RSp1560 HP1100 jhp1026 AGc1060 SMc03068 BMEII0511 mll6512 CC2055 >COG0130 (Putative duplication confidence score 1.000) CLUSTER 1 AF0238 VNG1729G MA1105 MTH32 MJ0148 MK0133 Ta1244 TVN0352 PH1644 PAB0356 PAE0865 SSO0393 APE0990 YLR175w YNL292w SPAC29A4.04c SPBC11C11.10 ECU05g1020 aq_705 TM0856 FN0635 DR1323 CAC1805 Cgl1933 Rv2793c MT2862.1 ML1546 L0328 SPy1251 SP1212 SA1114 lin1365 BS_truB BH2410 slr0457 alr1543 truB ZtruB ECs4047 YPO3494 STM3284 BU375 VC0645 PA4742 HI1289 PM0756 XF0237 NMB1374 NMA1588 RSc1291 Cj1102 AGc127 SMc00321 BMEI1963 mlr5558 CC0036 RP501 RP502 RC0665 CT094 CPn0319 TP0889 BB0803 UU354 MYPU_5500 CLUSTER 2 SSO5761 APE0989 >COG0136 (Putative duplication confidence score 0.692) CLUSTER 1 AF1506 VNG1435G MA0430 MTH799 MJ0205 MK1389 Ta0363 PH1088 PAB1678 PAE2876 SSO0874 SSO2178 APE1143 YDR158w SPCC1827.06c aq_1866 TM1523 DR2008 CAC0022 CAC0568 Cgl0253 Rv3708c MT3811 ML2322 L66199 SP1013 SA1226 lin1476 BS_asd BH2401 slr0549 all3680 usg Zusg ECs3203 YPO2765 STM2369 VC2107 PA3116 HI1433 PM0486 XF1371 HP1189 jhp1114 Cj1023c AGc4523 SMc04410 BMEII0407 mll4392 CC0253 CC3485 RP316 RC0430 CT363 CPn1048 CLUSTER 2 asd Zasd ECs4278 YPO3949 STM3539 BU448 VC2036 PA3117 HI0646 PM1632 NMB2079 NMA0351 RSc1987 >COG0144 (Putative duplication confidence score 1.000) CLUSTER 1 AF0853 AF2039 AF2324 VNG0499G MJ0026 MK0043 MK0295 MK0370 MK0444 MK0673 MK0769 MK1539 MK1575 MK1630 PH0851 PH1078 PH1374 PH1537 PH1991 PAB0523 PAB0830 PAB1173 PAB1947 PAB2390 PAE0743 PAE3578 SSO0122 SSO0252 SSO0371 APE0514 APE1098 APE2465 YBL024w YNL022c YNL061w_2 SPAC17D4.04 SPAC23C4.17 SPAC2C4.06c SPBP8B7.20c ECU01g1080 ECU07g0320 ECU08g0400 TM1512 FN0313 DR2168 CAC1725 Cgl1561 Rv1407 MT1451 L141260 SPy1246_1 SPy1627 SP1402_1 SP1734 SA1060 lin1936 BS_yloM BH2507 slr0679 alr0820 alr1008 sun yebU_1 Zsun ZyebU_1 ECs2545_1 ECs4154 YPO0240 STM1850_1 STM3408 VC0044 VC1502_1 PA0017 HI0624 PM1561 XF0928 NMB0112 NMB1351 NMA0162 NMA1563 RSc0075 RSc2453 Cj0636 AGc495 AGc5121 SMc00403 SMc04090 BMEI0235 BMEII0890 mlr4098 mlr6944 CC0102 CC1619 CT553 CPn0674 CLUSTER 2 MK0170 >COG0145 (Putative duplication confidence score 0.667) CLUSTER 1 AF0906 MA0858 MA2889 MA3497 MA3498 MA4203 MA4395 MA4396 MA4562 MA4563 MK1093 SSO1668 lin0475 BH1881 BH1884 AGl3521 AGl3530 SMc02580 mll9131 mlr4662 CLUSTER 2 MA2300_1 MJ0964 MK1091 TVN0812 PAE2030 SSO1663 SSO2008 SSO2936 APE1328 APE2528 YKL215c_1 SPAC11D3.14c_1 SPAC11D3.15_1 aq_708 Rv0266c_1 slr0697_1 all4970 HP0695 jhp0633 AGpT62 SMb20023_1 SMb20406 BMEII0602_1 mlr1573_1 mlr4786 mlr5245 mlr7024 mlr9030 CC2369_1 >COG0146 (Putative duplication confidence score 0.500) CLUSTER 1 MA2300_2 MJ0963 MK1048 TVN0811 PAE2028 SSO1662 SSO2010 SSO2934 APE1331 APE2530 YKL215c_2 SPAC11D3.14c_2 SPAC11D3.15_2 aq_1925 Rv0266c_2 slr0697_2 all4969 AGpT63 SMb20023_2 BMEII0602_2 mlr1573_2 mlr4788 mlr7025 mlr9031 CC2369_2 CLUSTER 2 HP0696 jhp0632 SMb20407 mlr5246 >COG0147 (Putative duplication confidence score 1.000) CLUSTER 1 AF1603 VNG0384G VNG1647G MA2987 MTH1655 MJ1075 MK0437 Ta0806m TVN1024 PAB2045 PAE2460 SSO0893 APE2553 YER090w YNR033w_2 SPBP8B7.29_2 SPCC1442.09 aq_1144 aq_582 TM0142 FN1730 DR0196_1 DR1791 CAC3163 Cgl0970_2 Cgl2971 Rv1005c Rv1609 Rv2386c MT1034 MT1644 MT2454 ML0236 ML1269 L0054 L0179_1 SPy1990_1 SP0665_1 SP1817 SA0669 SA1199 lin1674 lin2893_1 BS_pabB BS_trpE BH0090 BH1659 slr0738 slr1979 all0328 all0414_1 alr3233_1 alr3443_2 pabB trpE ZpabB ZtrpEm ECs1836 ECs2521 YPO1773 YPO1916 YPO1976 YPO2208 STM1723 STM1824 BUpT01 VC1174 VC1303 PA0609 PA1001 PA1758 HI1170 HI1387 PM0584 PM1464 XF0210 XF0674 XF1914 NMB1021 NMB1970_1 NMA0477_1 NMA1247 RSc2633_1 RSc2881 HP0293_1 HP1282 jhp0278_1 jhp1203 Cj0345 Cj0862c_1 AGc3082 AGc4162_1 SMc02725_1 SMc04013 BMEI0449_1 BMEII0013 mlr2774_1 mlr3005 CC1895 CC2953 CLUSTER 2 PA1903_1 PA4214_1 >COG0157 (Putative duplication confidence score 0.500) CLUSTER 1 AF1839 VNG1884G MA0322 MA0955 MTH1832 MJ0493 MK0446 PH0011 PAB2347 PAE3114_1 SSO0996 YFR047c aq_869 TM1645 FN0010 CAC1023 Cgl1044 Rv1596 MT1632 ML1227 SPy0197 SP2016 lin2132 BS_nadC BH1219 slr0936 all2091 nadC ZnadC ECs0113 YPO3424 STM0145 VC2422 PA4524 XF1925 NMB0396 NMA2088 RSc2448 HP1355 jhp1273 AGl1516 SMc02598 mll5833 mll6272 mll9102 CC2915 CLUSTER 2 ZmodD ECs1694 HI1473 PM1111 >COG0160 (Putative duplication confidence score 0.750) CLUSTER 1 VNG1524C VNG6210G MA2859 Ta0068 TVN0024 PH0138 PH0782 PH1423 PH1501 PAB0086 PAB0501 PAB1921 PAB2386 PAE1799 SSO2720 SSO2727 SSO3211 APE0457 SPAC1039.07c DRA0029 CAC0368 CAC1427 Cgl0472 Cgl2387 Rv2589 MT2666 ML0485 SA2397 BS_ycnG BH0919 BH0991 BH2624 all0396 alr2398 gabT goaG ZgabT ZgoaG ECs1879 ECs3523 YPO2844 STM2792 VCA0605 VCA0824 PA0266 PA2413 HI0949 RSc0029 RSp1424 AGpA358 AGpA435 SMa1761 SMa2400 SMb20973_3 SMb21186 SMc00675_2 SMc00677_3 SMc02413 BMEII0131 BMEII0348 mlr5521 mlr5943 mlr6024 mlr6991 mlr7169 CLUSTER 2 YGR019w SPAC19D5.07 Rv3290c MT3389 >COG0169 (Putative duplication confidence score 1.000) CLUSTER 1 AF2327 VNG0382G MA4594 MTH242 MJ1084 MK0117 Ta0284 TVN1317 PAB0300 PAE1913 SSO0306 APE0574 YDR127w_5 SPAC1834.02_5 aq_901 TM0346 FN0045 DR0077 DR1173 CAC0897_2 Cgl0419 Cgl1108 Cgl1591 Rv2552c MT2629 ML0515 L0061 SPy0534 SPy1584 SP1376 SA1424 lin0493 lin1525 lin2338 BS_aroD BH1324 slr1559 alr2057 aroE ydiB ZaroE ZydiB ECs2399 ECs4147 YPO0246 YPO1610 STM1359 STM3401 STM3859 BU493 VC0056 PA0025 PA0244 HI0607 HI0655 PM1271 PM1429 XF0624 NMB0358 NMA2129 RSc2777 RSp1398 HP1249 jhp1170 Cj0405 AGc3 AGl1139 AGl673 SMb20037 SMc02791 BMEI2058 BMEII0059 BMEII0871 mlr4492 CC0003 CT370_2 CPn1035_2 CLUSTER 2 SMc02044 >COG0174 (Putative duplication confidence score 0.600) CLUSTER 1 AF0949 VNG2093G MA3382 MA4216 MTH1570 MJ1346 MK0338 Ta1498 TVN1492 PH0359 PAB1292 PAE2556 PAE3442 SSO0366 SSO2440 SSO2554 APE2142 aq_111 TM0943 DR0451 Cgl2165 Cgl2180 Rv1878 Rv2220 Rv2222c Rv2860c MT1927 MT2278 MT2280 MT2928 ML0925 ML1631 L0118 SPy1877 SP0502 SA1150 lin1337 BS_glnA BH2360 BH3867 slr1756 alr2328 glnA ycjK Z2491 ZglnA ECs1874 ECs4792 YPO0024 STM4007 VC2746 PA0296 PA0298 PA1566 PA2040 PA3356 PA5119 PA5508 PA5522 HI0865 PM1175 XF1842 NMB0359 NMA2128 RSc1258 RSp0886 HP0512 jhp0461 Cj0699c AGc1068 AGc3253 AGc326 AGc3883 AGl1262 SMc00762 SMc00948 SMc01594 SMc01973 SMc02352 SMc02613 BMEI0979 BMEII0523 BMEII0554 mll0343 mll3074 mll4187 mll5148 mll6521 mll7254 mll7307 mlr6210 CC1969 CC3130 CC3138 RP495 RC0671 CLUSTER 2 YPR035w SPAC23H4.06 AGc4385 SMb20745 mlr0339 >COG0179 (Putative duplication confidence score 1.000) CLUSTER 1 AF0091 AF2225 VNG1037G MA0585 MTH1507 MJ1656 MK1002 Ta0750 Ta1154m TVN1232 PH0643 PAB1451 PAE2688 SSO2520 SSO2773 SSO2941 APE0053 YNL168c SPBC21C3.09c DR1609 DRA0226 Cgl1260 Cgl2964 Rv0939_1 Rv2993c MT0966_1 MT3071 ML1689 SA0829 lin2367 BS_yisK BH1071 BH2000 BH2005 slr1877 alr4803 ycgM Z1942 Z3392 ECs1675 ECs3029 YPO1566 YPO2082 STM0331 STM1101 STM1812 STM2177 VCA1004 PA0318 PA2008 PA2471 PA4121 PA4122 PM1528 PM1529 NMB1338 NMA1552 RSc0383 RSc1086 RSc1824 RSp0690 Cj0021c AGc22 AGc2795 AGl564 SMb21112 SMc04240 BMEI1708 BMEI1882 BMEII0137 mll4780 mlr1134 CC3567 CLUSTER 2 VC1346 RSc0301 SMc03207 mlr8306 CC2531 >COG0183 (Putative duplication confidence score 0.700) CLUSTER 1 AF0018 AF0034 AF0133 AF0134 AF0201 AF0202 AF0283 AF0438 AF0967 AF0968 AF1291 AF2416 VNG0678G VNG0931G MA4042 MTH793 MJ1549 MK1378 Ta0030 Ta0351 Ta1456 TVN0069 TVN0131 TVN1260 PH0676 PAB0907 PAE1377 PAE2183 PAE2471 PAE2486 PAE2488 SSO0534 SSO2061 SSO2062 SSO2508 SSO2625 SSO2697 SSO2874 SSO3113 APE0929 APE1872 APE2382 APE2384 Rv0914c Rv1627c Rv1867 Rv2790c Rv3522 Rv3523 Rv3540c MT0939 MT1663 MT2860 MT3622.1 MT3623 MT3644 PA1016 AGl121 SMc00262 mlr7614 CC1432 CC1967 CC3111 CLUSTER 2 AF1028 AF1197 AF2243 VNG2063G Ta0296 Ta0582 TVN0649 TVN1304 PAE1220 PAE3656 SSO2377 SSO2496 APE2108 YIL160c YPL028w SPBC215.09c ECU06g0940 FN0495 DR1072 DR1428 DR1960 DR2480 DRA0053 CAC2873 CAP0078 Cgl2341 Rv0243 Rv0859 Rv1074c Rv1323 Rv3546 Rv3556c MT0257 MT0882 MT1104 MT1169 MT1365 MT3650 MT3660 ML1158 ML2162 ML2564 L11745 L25946 SPy0140 SPy0524 SPy1637 SA0223 SA0342 SA0534 lin1453 BS_mmgA BS_yhfS BS_yusK BH0205 BH1997 BH2029 BH3487 BH3801 slr1993 atoB fadA paaJ yfcY yqeF Z3605 ZfadA ZyqeF ECs3225 ECs3701 ECs4773 YPO2746 YPO3767 STM2389 STM3019 STM3982 VC1046 VC2759 VCA0690 PA0228 PA1736 PA2001 PA2553 PA2940 PA3013 PA3454 PA3589 PA3925 PA4785 HI0771 RSc0276 RSc0475 RSc1632 RSc1637 RSc1761 RSc2252 HP0690 jhp0638 AGc5022 AGc886 AGl2713 AGl640 SMa1450 SMb20589 SMc00966 SMc02228 SMc03879 BMEI0274 BMEII0496 BMEII0646 BMEII0817 mll4180 mlr3847 mlr5628 CC0077 CC0265 CC0510 CC0779 CC0894 CC1111 CC2407 CC3462 RP737 RC1134 RC1135 BB0109 >COG0194 (Putative duplication confidence score 1.000) CLUSTER 1 YDR454c SPBC1198.05 ECU01g1220 aq_184 TM1689 FN2033 DR2289 CAC1718 Cgl1568 Rv1389 MT1434 ML0541 L149828 SPy1632 SP1738 SA1052 lin1941 BS_yloD BH2512 slr1123 alr0106 gmk Zgmk ECs4523 YPO0040 STM3740 BU434 VC2708 PA5336 HI1743 PM0922 XF1503 NMB1661 NMA1919 RSc2155 HP0321 jhp0304 Cj1177c AGc2038 SMc00577 BMEI1469 mlr7857 CC1681 RP765 RC1194 CT030 CPn0120 UU213 MYPU_6870 MPN246 MG107 CLUSTER 2 CAC0298 CAC1217 >COG0195 (Putative duplication confidence score 1.000) CLUSTER 1 AF1891 VNG2661G MA1260 MTH1054 MJ1045 MK0682 Ta0393m TVN1179 PH1543 PHS019 PAB0426 PAB3393 PAE0669 SSO0220 APE1850 aq_259 TM1777 FN2022 DR1797 CAC1799 Cgl1941 Rv2841c MT2907 ML1558 L173813 SPy1724 SP0553 SA1109 lin1359 BS_nusA BH2416 slr0743 alr3829 nusA ZnusA ECs4050 YPO3497 STM3287 BU378 VC0642 PA4745 HI1283 PM0760 XF0234 NMB1642 NMA1896 RSc1288 HP1514 jhp1407 Cj0460 AGc136 SMc02912 BMEI1967 mlr5551 CC0044 RP553 RC0817 CT097 CPn0316 TP0892 BB0800 UU318 MYPU_2030 MPN154 MG141 CLUSTER 2 MTH1217 MK0714 PH0706 PAB1492 PAE0705 SSO0172 >COG0196 (Putative duplication confidence score 1.000) CLUSTER 1 YDR236c SPCC18.16c aq_139 TM0857 FN0707 DR1008 CAC1806 Cgl1932 Rv2786c MT2856 ML0852 L0167 SPy1250 SP1110 SA1115 lin0735 lin1366 BS_ribC BH2409 slr1882 alr4848 ribF ZribF ECs0028 YPO0474 STM0045 BU150 VC0681 PA4561 HI0963 PM1661 XF2419 NMB1834 NMA0621 RSc2457 HP1087 jhp0338 Cj0589 AGc1228 SMc00909 BMEII1044 mlr8243 CC0703 CT093 CPn0320 TP0888 UU355 MYPU_5480 MPN158 MG145 CLUSTER 2 BS_ribR >COG0208 (Putative duplication confidence score 0.667) CLUSTER 1 VNG2383G YGR180c YJL026w SPBC25D12.04 ECU06g0730 aq_1505_1 aq_1505_3 FN0103 DRB0109 CAC3276 Cgl2473 Rv1981c Rv3048c MT2033 MT3133 ML1731 L0295 SPy0425 SPy1378 SP1180 SA0687 lin2258 BS_nrdF BS_yosP BH0502 slr0591 nrdB nrdF ZnrdB ZnrdF ECs3118 ECs3539 YPO1213 YPO2648 STM2278 STM2808 BU178 VC1255 PA1155 HI1660 PM0719 XF1197 NMB1288 NMA1498 RSc2804 HP0364 jhp1016 Cj0231c AGc107 BMEII0929 CC0260 RP512 RC0651 CT828 CPn0985 TP0053 MYPU_5390 MPN322 MG229 CLUSTER 2 SSO2498 Rv0233 MT0244 >COG0209 (Putative duplication confidence score 1.000) CLUSTER 1 AF1664 VNG1644G VNG2384G MA1665 MTH652 Ta1475 TVN0092 PH0363_1 PH0363_3 PAB1057_1 PAB1057_3 PAB1057_5 PAB1057_7 PAE3155 SSO0929 APE2062 YER070w YIL066c SPAC1F7.05 ECU10g0920 aq_094 TM0118 FN0102 DR2374_3 DRB0108 CAC1047 CAC3277 Cgl2478 Rv0570 Rv3051c MT0596 MT3137 ML1734 L0294 SPy0427 SPy1375 SP1179 SA0686 lin2259 BS_nrdE BS_yosN BS_yosO_1 BS_yosO_3 BH0501 BH2810 slr1164 nrdA nrdE ZnrdA ZnrdE ECs3117 ECs3538 YPO1214 YPO2649 STM2277 STM2807 BU179 VC1256 PA1156 PA5496 PA5497 HI1659 PM0717 XF1196 NMB1291 NMA1501 RSc0195 RSc2805 HP0680 jhp0621 Cj0024 AGc106 AGc3183 SMc01237 BMEI0943 BMEII0930 mll0136 CC1889 CC3492 RP513 RC0647 CT827 CPn0984 TP1008 MYPU_5410 MPN324 MG231 CLUSTER 2 DR2374_1 >COG0219 (Putative duplication confidence score 1.000) CLUSTER 1 FN0809 DR0231 CAC0700 Cgl0628 Rv3366 MT3475 ML0419 L161988 SPy0371 SP0486 SA1672 BS_cspR BH1023 slr0992 alr3352 yibK ZyibK ECs4484 YPO0071 STM3695 VC2695 PA5127 HI0766 PM1513 XF1972 NMB0268 NMA2218 RSc0358 Cj0904c AGc4082 SMc00184 BMEI0470 mlr2718 CC0471 CT540 CPn0660 UU268 MYPU_3030 MPN521 MG346 CLUSTER 2 VCA0627 >COG0222 (Putative duplication confidence score 1.000) CLUSTER 1 YGL068w SPCC4B3.09c aq_1937 TM0457 FN2037 DR2043 CAC3145 Cgl0479 Rv0652 MT0681 ML1895 L0405 SPy1073 SP1354 SA0498 lin0283 BS_rplL BH0122 sll1746 alr5303 rplL ZrplL ECs4909 YPO3748 STM4152 BU035 VC0327 PA4271 HI0641 PM1738 XF2634 NMB0131 NMA0143 RSc3035 HP1199 jhp1122 Cj0477 AGc3571 SMc01318 BMEI0748 mlr0275 CC0497 RP139 RC0180 CT316 CPn0080 TP0240 BB0390 UU011 MYPU_2890 MPN539 MG362 CLUSTER 2 CAC1661 Cgl0420 ssl0438 >COG0223 (Putative duplication confidence score 1.000) CLUSTER 1 YBL013w SPAC1805.09c aq_1156_1 aq_2131 TM0528 FN1489 DR2435 CAC1723 Cgl1562 Rv1406 MT1450 ML0552 L0362 SPy1628 SP1735 SA1059 lin1937 BS_fmt BH2508 slr0070 alr3460 fmt yfbG_1 Z3513_1 Zfmt ECs3143_1 ECs4153 YPO0241 YPO2420_1 STM2299_1 STM3407 BU497 VC0045 PA0018 PA3554_1 HI0623 PM1560 XF0927 NMB0111 NMA0163 RSc0072 RSc1320 HP1141 jhp1069 Cj0098 AGc642 SMb21235 SMc01100 BMEI1418 BMEII0265 mll4854 CC0279 RP209 RC0279 CT530 CPn0649 TP0756 BB0064 UU463 MYPU_0450 MPN543 MG365 CLUSTER 2 Rv3404c MT3512 >COG0224 (Putative duplication confidence score 1.000) CLUSTER 1 MA2433 YBR039w SPBC1734.13 aq_2041 TM1611 FN0359 CAC2866 Cgl1184 Rv1309 MT1349 ML1144 L8105 SPy0759 SP1509 SA1906 lin0137 lin2674 BS_atpG BH3755 sll1327 all0004 atpG ZatpG ECs4675 YPO4122 STM3866 BU007 VC2765 PA5555 HI0480 PM1493 XF1144 NMB1935 NMA0518 RSc3318 HP1133 jhp1061 Cj0106 AGc4756 SMc02500 BMEI0250 mll4063 CC3448 RP802 RC1236 UU130 MYPU_2670 MPN599 MG400 CLUSTER 2 aq_203 >COG0226 (Putative duplication confidence score 1.000) CLUSTER 1 AF1356 VNG0457G VNG2486G MA0887 MA2349 MA3093 MTH1727 MTH1728 MJ1015 MK1690 PAB2365 PAE1397 SSO0489 APE0045 aq_2016 TM1264 DRA0157 CAC1705 Cgl2521 Rv0928 Rv0932c Rv0934 MT0955 MT0959 MT0961 ML2095 ML2192 L158188 L159386 SPy1245 SP1400 SA1221 lin2642 BS_pstS BH2994 sll0540 sll0679 sll0680 slr1247 all0911 all3054_1 all4575 alr1094 alr4585 pstS Z4788 Z4789 ZpstS ECs4271 ECs4272 ECs4664 YPO3203 YPO4117 STM3528 STM3857 VC0721 VCA0070 VCA0807 PA0688 PA0689 PA2548_1 PA5369 HI1383m PM0436 XF2141 RSc1529 RSc3310 Cj0613 AGc738 SMc02146 BMEI1989 mll3723 CC1515 BB0215 UU198 MPN611 MG412 CLUSTER 2 SP2084 >COG0235 (Putative duplication confidence score 1.000) CLUSTER 1 AF0480 VNG1201G MA0263 MTH1406 MJ1418 MK1585 TVN1450 PH0191 PAB0117 PAE2158 APE1657 YJR024c SPAC20H4.05c SPAC9.06c SPBC1289.14 SPBC359.06 aq_1658 aq_1979 TM0283 TM1072 FN1417 CAC1341 Rv0727c MT0752 ML0837 SPy0179 SP2033 SP2166 lin2198 lin2979 BS_araD BS_ykrY BH1871 all1723 araD fucA rhaD sgaE sgbE ygbL ZaraD ZfucA ZrhaD ZsgaE ECs0065 ECs3660 ECs4829 ECs5174 YPO0328 YPO1236 YPO2230 YPO3326 STM0101 STM2916 STM2974 STM3677 STM4045 STM4388 VCA0244 PA0224 PA1683 PA3430 HI0611 HI1012 HI1025 PM1244 PM1364 XF2209 RSc0806 RSc1767 RSp0889 HP0112 jhp0104 SMa1976 SMb20490 SMb20666 SMc01621 BMEII0189 BMEII1095 mll4933 mlr6791 CC1201 RP493 RC0678 MYPU_5990 MPN498 CLUSTER 2 BH1952 >COG0243 (Putative duplication confidence score 1.000) CLUSTER 1 AF0159 AF0176 AF1203 AF1651 AF2384 VNG0829G MTH1140 MTH1567 MJ0006 MJ1353m MK0321 Ta0045m TVN0002 PH1353 PH1359 PAB0532 PAB1389 PAB2442 PAE1265 PAE2002 PAE2662 PAE2840 PAE2859 SSO1029 SSO1580 SSO2795 SSO3191 APE2556 APE2610 aq_1039 aq_1234 aq_217 DR0397 Cgl0516 Rv0197 Rv1442 Rv2900c MT0207 MT1487 MT2968 BS_nasC BS_yoaE BS_yyaE BH0615 BH2530 BH2853 sll1454 all1061 alr0612 bisC bisZ dmsA fdhF fdnG fdoG napA torA ydeP ynfE ynfF Z2207 Z2575 Z2576 Z3785 ZbisC ZbisZ ZdmsA ZfdhF ZfdnG ZfdoG ZnapA ZtorA ECs0979 ECs1152 ECs2078 ECs2106 ECs2293 ECs2294 ECs2582 ECs3095 ECs3384 ECs4436 ECs4820 ECs5061 YPO0344 YPO0794 YPO2965 YPO3038 YPO3325 STM0611 STM0964 STM1383 STM1498 STM1499 STM1570 STM2065 STM2259 STM2530 STM3644 STM3822 STM4037 STM4285 STM4305 VC1692 VC1950 VCA0678 PA1174 PA1779_1 PA2714 PA3534 PA5181 HI0006m HI0344 HI0643 HI1047 PM0408 PM0409 PM0721 PM1594 PM1754 PM1793 RSc2373 RSc2859 RSp0070 RSp1048 RSp1219 HP0407 jhp0974 Cj0264c Cj0780 Cj1511c AGc2104 AGc2854 AGl1895 AGl213 AGl917 SMa0002 SMa1236 SMb20986 SMc00609 BMEI1243 BMEII0378 mll5614 mll9633 mlr2864 mlr7933 CC0617 CC1243 CLUSTER 2 PAE2839 >COG0246 (Putative duplication confidence score 0.562) CLUSTER 1 YEL070w YNR073c TM0068 CAC0695 Cgl0110 L0241 BS_yjmI BH0492 uxaB uxuB ydfI yeiQ ZuxaB ZuxuB ZydfI ZyeiQ ECs2128 ECs2151 ECs3064 ECs5282 YPO0580 YPO1280 YPO2325 STM1508 STM3083 STM3136 PA2342 RSc2129 AGc5101 AGl2604 AGl830 SMb20749 SMc01501 BMEII0478 mll4920 mlr1886 mlr4057 CC1487 CLUSTER 2 CAC0157 L33416 SP0397 SA1963 BS_mtlD BH3851 mtlD ZmtlD ECs4476 YPO4067 STM3686 BU571 VCA1046 PM1062 MYPU_7500 MPN652 >COG0247 (Putative duplication confidence score 1.000) CLUSTER 1 AF0502 AF0506 AF0543 AF0544 AF0547 AF0661 AF0755 AF0809 AF0867 AF1773 AF1851 AF1998 VNG1972G VNG2320G VNG2422G_2 VNG6379C_2 MA0526 MA0687 MA0688 MA4410_2 MA4630 MTH139 MTH1850_2 MJ0092_2 MK0132_2 MK0498 Ta0198m Ta0540 Ta0541 TVN0593 TVN0595 TVN1395 PAE1280 PAE1281 PAE1282 PAE1288 PAE1331 PAE1762 PAE2616 SSO2162_2 SSO2398 SSO2643 SSO3131 SSO3161 APE0101 APE0481 APE2352 aq_1639 aq_961 FN1540_2 DR1730 DR1907 DR2565 Cgl2262_2 Rv0338c MT0352 ML2501 L174321 BS_ysfD BS_yvfV BS_ywjF BH1832 BH2135 BH2729 BH3802 sll1831 all0623 glcF_2 glpC ydiJ_2 ykgE ZglpC ZydiJ_2 ZykgE ECs0344 ECs2394_2 ECs3128 YPO2407_2 YPO3824 STM1365_2 STM2286 VC1198_2 VCA0749 VCA0985_2 PA4772_2 PA5353 PA5399 HI0683 HI1163_2 PM0787_2 PM1440 PM1853 NMB0998_2 NMB1436 NMA1206_2 NMA1648 RSc0454_2 RSc1611 RSc2668 RSp0059 HP0139 HP0666 HP1222_2 jhp0127 jhp0611 jhp1143_2 Cj0075c Cj0991c Cj1585c_2 AGc1194 SMc00926 BMEII1061 mlr5745 mlr6920 CLUSTER 2 SSO0018 >COG0249 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0163G VNG0172G MA0523 TVN0674 TVN0675 YCR092c YDL154w YDR097c YFL003c YHR120w YOL090w SPAC13f5.01c SPAC8F11.03 SPBC19G7.01c SPCC285.16c ECU03g0540 ECU10g0710 aq_308 TM1719 FN0693 DR1039 CAC1837 CAC3034 CAC3563 L0277 SPy2148 SA1137 SA1853 lin1440 BS_mutS BH2369 sll1165 alr3638 mutS ZmutS ECs3589 YPO3354 STM2909 BU429 VC0535 PA3620 HI0707 PM1830 XF1716 NMB2160 NMA0247 RSc1151 AGc602 SMc01125 BMEI1801 mll5328 CC0012 RP298 RC0401 CT792 CPn0941 TP0328 BB0797 CLUSTER 2 SPBC24C6.12c >COG0252 (Putative duplication confidence score 1.000) CLUSTER 1 AF0882 VNG1844G MA1317 MTH706 MJ0020 MK1509 Ta0972 TVN1118 PH0066 PH1463 PAB1901 PAB2294 PAE1003 SSO0938 APE2200 YDR321w YLR155c YLR157c YLR158c YLR160c SPAC186.03 SPAC977.12 FN0751 DR2353 CAC1714 Cgl2092 Rv1538c MT1590 ML1198 L142722 SPy1782 SP1998 SA1310 lin2054 BS_ansA BS_yccC BH1624 ansA ansB ZansA ZansB ECs2474 ECs3833 YPO1386 YPO2161 STM1294 STM3106 STM3598 VC1995 PA1337 PA2253 HI0745 XF1093 NMB1688 NMA1947 RSc1306 HP0723 jhp0661 Cj0029 AGl2084 BMEI0105 BMEI0107 CLUSTER 2 YHR139c YNL160w >COG0259 (Putative duplication confidence score 1.000) CLUSTER 1 YBR035c SPAC1093.02 DR0495 Rv2607 MT2682 ML2131 sll1440 all1248 pdxH ZpdxH ECs2347 YPO2370 STM1448 VCA1079 PA1049 HI0863 XF1337 NMB1360 NMA1572 RSc0767 RSp0678 AGc1381 SMc00069 BMEI1517 mll7454 CC0918 CLUSTER 2 PA1905 PA4216 >COG0262 (Putative duplication confidence score 0.909) CLUSTER 1 MA4540 DR0793 CAC1495 Cgl0700 L18647 lin2717 BS_ywjB BS_yyaP PA3469 AGc2241 AGl575 SMa1326 SMc02439 SMc04173 mll1872 mll8258 mll8388 mlr0926 mlr2503 mlr2644 CLUSTER 2 YOR236w SPCC1223.08c_2 ECU01g0170 ECU01g1450 ECU08g0080 TM1641 FN0241 DR2632 CAC3004 Cgl0820 Rv2763c MT2833 ML1518 L162872 SPy0883 SP1571 SA1259 lin1987 BS_dfrA BH3450 folA Z0055 ECs0051 YPO0486 STM0087 BU143 VC0440 PA0350 HI0899 PM1893 XF2331 NMB0308 NMA2179 RSc0946 AGc3708 SMc01442 BMEI0609 mll1457 CC2126 RC0034 CT612 CPn0759 UU114 MYPU_5370 MPN300_1 MPN321 MG213_1 MG228 >COG0266 (Putative duplication confidence score 1.000) CLUSTER 1 DR0493 Cgl2021 Rv0944 Rv2924c MT0970 MT2994 ML1658 L0271 SPy0497 SP0970 SA1512 lin1599 BS_mutM BH3152 slr1689 alr4320 mutM ZmutM ECs4510 YPO0052 STM3726 VC0221 PA0357 HI0946 PM1145 XF0071 XF0170 NMB1295 NMA1505 RSc0399 AGc561 SMc01154 BMEI1946 mll5585 CC3707 RC1038 UU413 MYPU_3100 MPN380 MG262.1 CLUSTER 2 Cgl0824 Cgl2944 Rv2464c Rv3297 MT2539 MT3396 nei Znei ECs0739 STM0728 >COG0272 (Putative duplication confidence score 1.000) CLUSTER 1 aq_633 TM0100 FN1717 DR2069 CAC1195 CAC2673 Cgl1215 Rv3014c MT3094 ML1705 L0304 SPy0751 SP1117 SA1720 lin1870 BS_yerG BH0649 sll1209 all1717 lig Zlig ECs3283 YPO2989 STM2427 BU067 VC0971 PA1529 HI1100 PM1716 XF2556 NMB0666 NMA0865 RSc1398 HP0615 jhp0558 Cj0586 AGc3775 SMc01878 BMEI0589 mll1539 CC1522 RP720 RC1096 CT146 CPn0149 TP0634 BB0552 UU121 MYPU_3890 MYPU_4010 MPN357 MG254 CLUSTER 2 yicF ZyicF ECs4522 YPO0041 STM3739 >COG0276 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0311 TVN1293 YOR176w SPCC320.09 aq_948 DR1131 Cgl1500 Rv1485 MT1532 ML1805 L0194 SP1009 SA1651 lin2314 BS_hemH BH1203 slr0839_1 alr3751 hemH ZhemH ECs0528 YPO3117 STM0489 VC0987 PA4655 HI1160 PM0789 XF0566 NMB0718 NMA0927 RSc2643 HP0376 jhp1005 Cj0503c AGl2129 SMc04019 BMEII0018 mlr3019 CC3762 RP884 RC1373 CT485 CPn0603 CLUSTER 2 alr4616 >COG0277 (Putative duplication confidence score 1.000) CLUSTER 1 AF0394 AF0507 AF0808 AF0868 VNG2422G_1 MA4410_1 MA4631 Ta0542 TVN0596 PAE1284 PAE1286 PAE2035 SSO0788 SSO1004 SSO1063 SSO1531 SSO2162_1 SSO3163 SSO3165 APE0308 APE0487 YDL174c YDL178w YEL071w YML086c SPAPB1A10.12c SPBC713.03 aq_1769 FN1536 DR1026 DR1731 DR1732 CAC2542 Cgl0191 Cgl0556 Cgl0877 Cgl2262_1 Rv0063 Rv0161 Rv1257c Rv1726 Rv1771 Rv1774 Rv2251 Rv2280 Rv3107c Rv3351c Rv3352c Rv3353c Rv3719 Rv3790 MT0068 MT1296 MT1767 MT1821 MT1824 MT2311 MT2338 MT3190 MT3459 MT3460 MT3461 MT3822 MT3898 ML0109 ML1103 ML2333 ML2631 BS_ygaK BS_yitY BS_ysfC BS_yvdP BH2134 BH2136 BH2730 sll0404 sll1189 slr0806 all0324 all0624 all4443 alr5269 dld glcD glcF_1 ydiJ_1 ygcT ygcU Z4084 Zdld ZydiJ_1 ECs2394_1 ECs3020 ECs3629 YPO0308_1 YPO1177 YPO2407_1 STM1365_1 STM2167 VC1198_1 VCA0985_1 PA0317 PA1416 PA3026 PA4140 PA4772_1 PA5327 PA5354 PA5355 HI1163_1 HI1649 PM0787_1 XF0347 XF2205 NMB0997 NMB0998_1 NMB1524 NMA1205 NMA1206_1 NMA1724 RSc0050 RSc0172 RSc0454_1 RSc1556 RSc2664 RSc2666 RSc2667 HP0509 HP1222_1 jhp0459 jhp1143_1 Cj1213c Cj1585c_1 AGc1189 AGc1191 AGc1314 AGc3718 AGc4965 SMa0244 SMb20097 SMb21129 SMb21415 SMc00779 SMc00832 SMc00833 SMc00985 SMc01020 SMc01455 SMc04384 BMEI0599 BMEI1527 BMEII0185 BMEII0438 BMEII1062 BMEII1063 BMEII1064 mll1265 mll1289 mll1488 mll2617 mll8576 mll8747 mlr6875 mlr6916 mlr6919 mlr7184 mlr7440 mlr8207 CC1219 CC3389 CLUSTER 2 YPO1451 >COG0280 (Putative duplication confidence score 0.833) CLUSTER 1 VNG1624G_2 MA3607 FN1172 DR0073_2 CAC1742 Cgl2696 Rv0408_2 MT0421_2 L107797 SPy1128 SP1100 SA0545 lin2207 BS_pta BH3823 slr2132_2 eutI maeB_2 pta_2 Z3719_2 ZeutI Zpta_2 ECs3181_2 ECs3320 ECs3325_2 YPO2567_2 YPO3034_2 STM2338_2 STM2466 STM2472_2 BU176_2 VC1097_2 PA0835_2 HI1203_2 HI1245_2 PM0002_2 PM0705_2 XF0977_2 NMB0631_2 NMA0841_2 RSc2123_2 RSc2767_2 jhp0841_2 Cj0688_2 AGc3042_2 AGl2933_2 SMb21532 SMc00169_2 SMc01126_2 BMEI0967_2 BMEI1803 mlr0809_2 mlr5329_2 CC2622_2 CC3549_2 RP373_2 RC0507_2 TP0094 BB0589 UU066 MYPU_2370 MPN428 MG299 CLUSTER 2 TM1130 TM1755 CAC3076 lin1406 BS_yqiS RP109 RC0147 >COG0281 (Putative duplication confidence score 0.588) CLUSTER 1 AF1727 VNG1624G_1 MA1735 Ta0456m TVN0768 PH1275 PAB1792 PAE1688 SSO2869 APE0392 TM0542 Cgl2950 L3227 SPy1110 SA1524 BS_mleA BS_ytsJ BH0399 BH3168 slr0721 alr4596 maeB_1 Z3719_1 ECs3325_1 YPO3034_1 STM2472_1 VC2681 PA5046 HI1245_1 PM0002_1 XF0977_1 NMB0671 NMA0870 RSc2123_1 RSc2767_1 Cj1287c AGc3042_1 AGl2933_1 SMc00169_1 SMc01126_1 BMEI0967_1 BMEI1802 mlr0809_1 mlr5329_1 CC2622_1 CC3549_1 RP373_1 RC0507_1 CLUSTER 2 MA1002 YKL029c SPAC750.08c SPCC794.12c DR2583 DRA0276 CAC1589 CAC1596 Rv2332 MT2394 L121483 lin2029 BS_malS BS_ywkA sfcA ZsfcA ECs2083 YPO1511 STM1566 VC1188 PA3471 >COG0285 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0412G_1 Ta0637 TVN0757 YKL132c YMR113w SPAC227.09 aq_2045 TM0166 FN1014 DR0340 DR2575 CAC2398 Cgl2324 Rv2447c MT2523 ML1471 L0177 SPy0814 SPy1096 SP0197 SP0290 SA1487 lin1586 BS_folC BH3037 sll1612 alr1026 folC ZfolC ECs3199 YPO2769 STM2365 BU167 VC1001 PA3111 HI1261 PM0635 XF1946 NMB0693 NMA0896 RSc1979 HP1545 jhp1454 Cj1088c AGc35 SMc02763 BMEI2021 mlr5076 CC3541 RP536 RC0779 TP0340 CLUSTER 2 YOR241w SPBC1709.17 >COG0296 (Putative duplication confidence score 0.833) CLUSTER 1 MA3032 SSO2093 DR0464 Cgl2075 Rv1562c MT1613 all0168 all0875 STM1560 PA2164 RSp0237 AGpA409 SMb21447 CLUSTER 2 YEL011w aq_722 FN0856 DR1848 Cgl1196 Rv1326c MT1368 SP1121 BS_glgB sll0158 all0713 glgB ZglgB ECs4277 YPO3942 STM3538 VCA0016 PA2153 HI1357 PM0541 RSp0239 AGl1558 SMc03922 mlr7587 CT866 CPn0475 >COG0303 (Putative duplication confidence score 1.000) CLUSTER 1 AF0161 AF0930 AF0931_1 VNG0086Gm_1 VNG0090G MA4087 MA4350_1 MTH1003 MTH1369 MJ0666 MJ0886_1 MK1524 Ta1022_1 Ta1023 TVN0566 TVN0567_1 PH0582 PH1647 PAB1436 PAB2014 PAE3048 PAE3465_1 PAE3466 SSO0676 SSO2365 APE0177 APE0450 aq_030 DR0076 CAC2020_1 CAC2021 Cgl0213 Cgl0858 Cgl1170 Rv0438c Rv0994 MT0454 MT1023 ML0183 SA2068 lin1034 BS_moeA BH3021 slr0900 all5136 moeA ZmoeA ECs0905 YPO1495 STM0846 VC1527_2 VCA0617 PA3028 PA3914 HI1448 PM0694 RSc1037 RSc1330 HP0172 jhp0158 Cj0857c Cj1519 AGc3105 SMc00238 BMEI0841 mlr0617 CC3209 CLUSTER 2 SMc00519_1 BMEI1902 mlr0093_1 >COG0305 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1472 TM1736 FN1827 DR0549 CAC3715 Cgl2923 Rv0058_1 Rv0058_3 MT0064_1 MT0064_3 ML2680 L0286 SPy2182 SP2203 SA0015 lin0047 BS_dnaC BH4029 slr0833_1 slr0833_3 all0578_1 all0578_3 all7274 dnaB ZdnaB ECs1190 ECs5034 YPO0320 YPO1869 STM4246 BU546 VC0371 PA4931 HI1574 PM0412 XF0361 NMB0494 NMB0885 NMA1105 RSc1311 HP1362 jhp1280 Cj0562 AGc2006 AGl882 SMc00561 SMc01749 BMEI1485 mll7836 CC1665 RP542 RC0803 CT497 CPn0616 TP0058 BB0111 BBG32 UU550 MYPU_5150 MPN232 MG094 CLUSTER 2 CAC1192 BS_yorI >COG0313 (Putative duplication confidence score 0.600) CLUSTER 1 aq_1111 TM0709 FN1204 DR0636 CAC0307 Cgl0866 Rv1003 MT1032 ML0193 L6615 SPy0406 SP0938 SA0447 lin0210 BS_yabC BH0049 sll0818 all4680 yraL ZyraL ECs4027 YPO3547 STM3263 BU091 VC0582 PA4422 HI1654 PM0645 XF0552 NMB2088 NMA0342 RSc3266 HP0552 jhp0499 Cj0154c AGc523 SMc00416 BMEI1770 mlr4632 CC0144 RP747 RC1158 TP0975 BB0427 UU195 MYPU_0540 MPN071 MG056 CLUSTER 2 NMB1908 NMA0547 RSc1045 CT048 CPn0382 >COG0316 (Putative duplication confidence score 1.000) CLUSTER 1 MA0903 YLL027w_2 YPR067w SPBC3B9.17 SPCC645.03c aq_1857 DR0051 DR0439 Cgl2149 Rv2204c MT2260 ML0871 SA0801 BS_yutM BH3410 slr1417 slr1565 all1431 all4341 alr2385 iscA yadR ydiC ZyadR ZydiC ZyfhF ECs0160 ECs2391 ECs3394 YPO2404 YPO2894 YPO3387 STM0204 STM1369 STM2541 BU122 BU211 VC0627 VC0750 PA0665 PA3812 HI0376 HI1723 PM0320 PM0458 XF0405 XF2394_2 XF2562 NMB0557 NMB1381 NMA0739 NMA1597 RSc0494 RSc1021 AGc3148 AGc3339 SMc00301 SMc02075 BMEI1034 BMEI1091 mll5942 mlr0024 mlr1094 CC1858 CC2009 RP063 RP484 RC0093 RC0728 CLUSTER 2 yhgI_1 ZyhgI_1 ECs4256_1 YPO0127_1 STM3511_1 BU544_1 VC2720_1 PA1847_1 HI0433_1 PM1557_1 XF2603_1 >COG0318 (Putative duplication confidence score 1.000) CLUSTER 1 AF0089 AF0196 AF0262 AF0567 AF0568 AF0672 AF0687 AF0840 AF1029 AF1261 AF1510 AF1772 AF1855 AF1932 AF2033 AF2368 VNG0162G VNG1073G VNG1339C MA1028 MA1422 MA3717 MTH657 Ta0292 Ta0667 Ta1450 TVN0126 TVN0671 TVN1309 PAE1379 PAE2333 PAE2466 SSO0369 SSO1597 SSO2510 SSO2523 SSO2808 SSO2875 SSO3064 APE0396 APE1310 APE2284 YBR041w YBR222c YOR093c SPAC22F3.04 SPAC56F8.02 SPCC1827.03c DR0336 DR1692 DR2507 DRA0264 DRA0309 Cgl0284 Cgl0395 Cgl0445 Cgl1172 Cgl2812 Rv0035 Rv0099 Rv0119 Rv0166 Rv0214 Rv0270 Rv0404 Rv0542c Rv0551c Rv1013 Rv1058 Rv1185c Rv1193 Rv1206 Rv1345 Rv1427c Rv1521 Rv1529 Rv1683_2 Rv1750c Rv1925 Rv2505c Rv2930 Rv2941 Rv2948c Rv2950c Rv3089 Rv3506 Rv3513c Rv3515c Rv3561 Rv3801c Rv3826 MT0040 MT0108 MT0127 MT0175 MT0224 MT0283 MT0417 MT0567 MT0577 MT1041 MT1088 MT1222 MT1230 MT1244 MT1387 MT1470 MT1572 MT1580 MT1723_2 MT1793 MT1976 MT2580 MT2999 MT3011 MT3021 MT3023 MT3174 MT3610 MT3615.2 MT3616 MT3666 MT3908 MT3934 ML0100 ML0132 ML0134 ML0138 ML0243 ML1051 ML1234 ML1346_2 ML1994 ML2257 ML2358 ML2546 ML2661 L0172 L24742 SPy0526 SA0226 SA0533 SA1615 lin1780 BS_lcfA BS_menE BS_pksJ BS_ydaB BS_yhfL BS_yhfT BS_yngI BH1131 BH1932 BH2006 BH3103 BH3104 slr0492 alr0035 alr2678_1 alr4057 aas_2 caiC fadD menE ydiD Zaas_2 ZcaiC ZfadD ZmenE ZydiD ECs0040 ECs2408 ECs2514 ECs3148 ECs3693_2 YPO0793_2 YPO2074 YPO2523 STM0071 STM1350 STM1818 STM2305 STM3010_2 VC0249 VC1971 VC1985 PA1215 PA2424_1 PA2557 PA2893 PA3299 PA3300 PA3860 PA3924 PA4198 HI0194 HI0390.1 PM0357 PM0707 XF0287 XF2276 NMB1276 NMB1555 NMA1482 NMA1743 RSc0064 RSc0442 RSc0780 RSc1749 RSc1806_1 RSc2857 RSp0227 RSp0641_1 RSp0787 RSp1419_1 Cj0938c_3 AGc2614 AGc3078 AGc713 AGl123 AGl2326 SMa0150 SMb20650 SMc00261 SMc00965 SMc02162 BMEI1632 mll5415 mll6742 mll6983 mll7824_2 mlr1843 mlr4763 mlr5451_3 mlr6932 mlr6974 mlr7293 mlr7537 CC0192 CC0391 CC0922_1 CC0944 CC0966 CC1165 CC1321 CC1733 CC1801 CC1812 CC2299 CC2400 CC3188 CC3338 RP620_3 RC0962_3 CT776 CPn0922 CLUSTER 2 SMc00592 >COG0322 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2381G MA3324 MTH441 aq_2126 TM0265 FN1090 DR1354 CAC0508 CAC3468 Cgl1554 Rv1420 Rv2191_2 MT1463 MT2247_2 ML0562 L0258 SPy1068 SP0618 SA0993 lin0839 lin1197 BS_uvrC BS_yurQ BH3097 sll0664 sll0865 alr2728 uvrC ydjQ Z2771 ZuvrC ECs2447 ECs2651 YPO1866 STM1309 STM1946 VC1214 PA2585 HI0057 PM0857 XF2311 NMB1326 NMA1540 RSc1071 HP0821 jhp0760 Cj1246c AGc2088 SMc00602 BMEI1251 mlr7912 CC2881 RP572 RC0864 CT791 CPn0940 TP0472 BB0457 UU381 MYPU_1560 MPN125 MG206 CLUSTER 2 sll0441 >COG0323 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0159G MA0522 YMR167w YNL082w YPL164c SPAC19G12.02c SPBC1703.04 ECU05g0300 ECU11g1260 aq_1578 TM0022 FN0462 DR1696 CAC1836 L0276 SPy2121 SP0173 SA1138 lin1441 BS_mutL BH2368 slr1199 alr3055 mutL ZmutL ECs5146 YPO0371 STM4359 BU570 VC0345 PA4946 HI0067 PM0904 XF0760 NMB1442 NMA1655 RSc2563 AGc1260 SMc00932 BMEII1026 mll8278 CC0695 RP880 RC1361 CT575 CPn0812 TP0303 BB0211 CLUSTER 2 YLR035c >COG0324 (Putative duplication confidence score 1.000) CLUSTER 1 YOR274w SPAC343.15 aq_1067 TM0525 FN1917 DR1690 CAC1835 Cgl1899 Rv2727c MT2799 ML0995 L15012 SPy0921 SP0671 SA1144 lin1332 BS_miaA BH2366 sll0817 alr5266 miaA ZmiaA ECs5147 YPO0372 STM4360 BU569 VC0346 PA4945 HI0068 PM0905 XF0090 NMB0935 NMA1130 RSc2564 HP1415 jhp1310 Cj0166 AGc3695 SMc01435 BMEI0616 mll1448 CC2098 RP510 RC0656 CT766 CPn0910 TP0637 BB0821 CLUSTER 2 all0220 RSp1225 AGpT290 AGpT50 >COG0337 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0285 TVN1316 PAB0298 PAE1926 SSO0305 APE0579 YDR127w_1 SPAC1834.02_1 TM0348_2 FN0871_1 DR0777 CAC0894 Cgl1583 Rv2538c MT2613 ML0518 L0060 SPy1577 SP1375 SA1298 lin2041 BS_aroB BH1657 slr2130 alr1924 aroB ZaroB ECs4231 YPO0152 STM3486 BU538 VC2628 PA5038 HI0208 PM1223 XF1334 NMB1814 NMA0647 RSc2969 HP0283 jhp0268 Cj1008c AGl2401 SMc00696 BMEI0043 mll3571 CC3009 CT369 CPn1036 CLUSTER 2 all0417 >COG0339 (Putative duplication confidence score 0.500) CLUSTER 1 YCL057w DR1659 Cgl2248 slr0659 alr0880 dcp prlC Zdcp ZprlC ECs2147 ECs4370 YPO3975 STM1512 STM3594 VC0188 PA0067 HI0214 PM0680 XF0127 XF1944 NMB0214 NMA0054 RSc1595 AGc4829 SMc04403 BMEII0416 mlr4139 CC3702 CLUSTER 2 YKL134c SPAC1F3.10c >COG0344 (Putative duplication confidence score 1.000) CLUSTER 1 aq_676 TM1447 FN0537 DR0790_1 DR2021 DR2270 CAC2500 L5517 SPy0908 SP0851 SA1187 lin1323 BS_yneS BH1639 sll1973 all0492 ygiH ZygiH ECs3942 YPO0647 STM3207 VC0523 PA0581 HI0266 PM1696 NMB1062 NMA1261 RSc2546 HP1509 jhp1402 Cj0357c AGc2402 SMc01362 BMEII0668 mlr0688 CC2446 UU405 MYPU_2950 MPN350 MG247 CLUSTER 2 TM1283 >COG0348 (Putative duplication confidence score 1.000) CLUSTER 1 AF0143 MA4409 MJ0749 MJ0750 MK1183 Ta1233 TVN0362_2 SSO1581_2 SSO1816 SSO2764_2 CAC2762_1 slr1529_3 all3558_3 napH yccM ZnapH ZyccM ECs1147 ECs3093 STM2257 VC0036 PA1551 PA3391_2 PA4131 HI0346 PM1596 NMB1454 NMA1668 RSc1280 RSp1369_2 HP1508 jhp1401 Cj0369c Cj0782 AGc2821 SMa1179_2 SMa1211 BMEI1567 BMEII0975_2 mll6626 mlr6415 CC1405 CLUSTER 2 BMEII0882 >COG0352 (Putative duplication confidence score 1.000) CLUSTER 1 AF2074 MA2722 Ta1277 TVN0508 PH1156 PAB1645 YPL214c_1 SPAC23H4.10c_1 aq_1366 aq_558 FN1752 FN1758 DRA0174 CAC0495 CAC2920 Cgl1428_1 Cgl1990 Rv0414c MT0427 ML0300 L0201 SP0718 SP0725 SA1894 lin0343 BS_tenI BS_thiC BH1431 sll0635 alr1343 thiE ZthiE ECs4916 YPO3740 STM4163 VC0062_2 PA3976 PA4400_2 HI0417 PM1260 XF0378 XF1120_2 NMB2069 NMA0363 RSc0108 RSp0984 HP0843 jhp0781 Cj1043c Cj1081c AGl3059 SMb20618 BMEI1736 mll5789 CC3264 CC3746 CLUSTER 2 AGl2166 SMc03996 BMEI0329 mlr3913 >COG0365 (Putative duplication confidence score 0.500) CLUSTER 1 AF0197 AF0366 AF0677 AF0975 AF0976 AF1287 AF2389-C AF2389-N VNG0484G VNG0997G MA2912 MTH1603 MTH1604 MTH216 MTH217 MTH701 MTH702 Ta0229 Ta0421 Ta0769 Ta1508m TVN0122 TVN1150 TVN1266 TVN1268 PAE2474 PAE2481 PAE2865 PAE2867 PAE3592 SSO1314 SSO1340 SSO1342 SSO1903 SSO2020 SSO2021 SSO2041 SSO2059 SSO2070 SSO2216 SSO2863 SSO3203 SSO9201 APE1346 APE2604m YAL054c YLR153c SPCC417.14c ECU05g0310 aq_2103 aq_2104 DR0460 DR2471 Rv3667 MT3768 SA1554 SA2402 lin2868 BS_acsA BS_ytcI BH1137 BH3201 BH3234 sll0542 all4256 all4257 acs prpE Z4856 Zacs ZprpE ECs0388 ECs4331 ECs5051 YPO0253 STM0371 STM4275 VC0298 VC1340 VCA0829 PA0887 PA0996 PA1997 PA2555 PA3568 PA4733 PM0692 XF1038 XF2255 RSc0432_1 RSc1518 RSc1952 RSp0037 RSp0367_1 RSp0651 RSp1265 HP1045 Cj1537c AGc4980 AGl1446 SMa0567 SMc00741 SMc00774 SMc04093 SMc04095 BMEI0238 BMEI0307 BMEI1921 BMEI1922 BMEII0815 mll5286 mll6017 mlr0619 mlr2005 mlr4089 mlr6539 CC3581 CLUSTER 2 L54546 lin0373 >COG0367 (Putative duplication confidence score 1.000) CLUSTER 1 AF1439 VNG0867G MA1966 MTH414 MJ1056 MJ1116 MK0103 Ta0315 TVN0439 PH1102 PAB0750 PAB1605 PAE0376 APE2041 YGR124w YML096w YPR145w SPBC119.10 SPBC4F6.11c ECU04g0840 CAC2243 CAC2249 Cgl2148 Rv2201 MT2257 ML0874 L00396 L0095 lin1772 BS_asnB BS_asnH BS_asnO BH1508 asnB ZasnB ECs0704 YPO2623 STM0680 VC0991 PA0051 PA1214 PA2084 PA3459 XF0118 SMb20481 SMb20652 mll5256 mll6743 mlr5888 mlr6755 mlr9125 CLUSTER 2 MA0051 >COG0370 (Putative duplication confidence score 1.000) CLUSTER 1 AF0246 AF2394 MA3477 MA4337 MTH1361 MTH213 MJ0566 MK1248 PH1205 PAB0708 PAE0323 PAE0324 aq_1255 TM0051 DR1219 CAC0448 CAC1031 L190009 SA2337 lin2209 slr1392 alr2118 alr2119 feoB ZfeoB ECs4251 YPO0132 STM3506 VC2077 PA4358 XF0933 RSp0251 HP0687 jhp0627 Cj1398 CC0712 CLUSTER 2 SA2369 >COG0372 (Putative duplication confidence score 0.500) CLUSTER 1 AF1340 VNG2102G MA0249 MTH1726 MTH962 Ta0169 Ta0819 TVN0239 PAE1689 PAE3584 PAE3585 SSO2589 APE1713 SPBC1703.07_2 aq_150 TM0290 DR0757 Cgl0639 Cgl0806 Cgl6076 Rv0889c Rv0896 Rv1131 MT0912 MT0920 MT1163 ML2130 L67186 SA1518 lin1602 BS_citA BS_citZ BS_mmgD BH3160 BH3924 sll0401 alr0222 gltA prpC ZgltA ZprpC ECs0386 ECs0745 YPO1108 STM0369 STM0730 VC1337 VC2092 PA0795 PA1580 PM0276 XF1535 NMB0431 NMB0954 NMA1148 NMA2054 RSc1991 RSp0121 HP0026 jhp0022 Cj1682c AGc2572 AGl71 AGpA439 AGpA441 SMc02087 BMEI0836 mll3842 mlr0629 mlr3843 msl6268 CC1906 CC3642 CC3643 RP844 RC1308 CLUSTER 2 YCR005c YNR001c YPR001w SPAC6C3.04 >COG0380 (Putative duplication confidence score 1.000) CLUSTER 1 MTH1757 Ta1210 TVN1254 PAE1272_1 YBR126c YDR074w_1 YML100w_2 YMR261c_2 SPAC19G12.15c_1 SPAC22F8.05_1 SPAC328.03 SPAC3G6.09c_1 SPACUNK4.16c_1 ECU01g0800 Cgl2573 Rv3490 MT3594 ML2254 sll1566 otsA ZotsA ECs2604 STM1928 RSp0731 RSp1105 SMa0233 mll0691 mlr9595 msr9761 CLUSTER 2 ECU01g0870_1 >COG0389 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1014G MA0974 MA4027 SSO2448 YDR419w YOR346w_2 SPBC16A3.11_1 SPCC553.07c FN1199 CAC0285 Cgl2094 Rv1537 Rv3056 MT1589 MT3142 L0305 L180104 SPy1846 SP0458 SA1196 SA1711 lin2082 lin2823 pli0067 BS_uvrX BS_yobH BS_yozK BS_yqjH BS_yqjW BH1472 BH2741 slr0790 alr7254 dinP umuC ZdinP ZumuC ECs0258 ECs1679 YPO3231 PSLT054 STM0313 STM1997 VC2287 PA0923 PM0467 NMB1448 NMA1661 RSc1587 AGc2382 AGpA692 SMa0886 SMa2355 SMc01373 BMEII0656 mll9709 mlr0866 mlr1877 CC2466 UU437 MYPU_1880 MPN537 MG360 CLUSTER 2 Cgl0600 Rv3394c MT3501 PA0670 RSp0799 AGl3171 AGpA144 AGpT174 SMa0890 SMc03789 BMEI1875 mlr4427 CC3212 >COG0396 (Putative duplication confidence score 0.600) CLUSTER 1 AF2364 VNG0524G MA4406 MTH1149 Ta0202 TVN1391 PH1384 PAB1855 PAE1808 SSO0925 APE1702 TM1368 DR2107 CAC3288 Cgl1525 Rv1463 MT1510 ML0595 L34806 SPy0285 SP0867 SA0774 lin2510 BS_yurY BH3471 slr0075 alr2493 ynhD ZynhD ECs2389 YPO2402 STM1371 XF1475 AGc3346 SMc00531 BMEI1041 mlr0019 CC1862 CT685 CPn0691 TP0611 CLUSTER 2 MA0937 MJ0035 MK1233 PH0882 TM1417 >COG0402 (Putative duplication confidence score 0.667) CLUSTER 1 AF0550 AF0997 AF1775 VNG1205C VNG2249G VNG6258C MA1276 MA4095 MTH1505 MTH994 MJ0699 MJ1541 MK0366 MK1050 Ta1060m TVN0515 PH1515 PAB0443 PAE0309 SSO0398 SSO0679 SSO2438 APE2436 YDL238c SPAC1F8.04c SPCC1672.03c aq_587 TM0936 DR0824 DRA0180 CAC0282 SP1356 BH0185 BH0746 BH1692 alr3749 ssnA ygfP Z4218 ZygfP ECs3752 ECs3756 YPO1974 PA0134 PA0142 PA1521 PA3170 PA5106 XF2472 RSc2099 RSc2119 RSp0551 HP0267 jhp0252 Cj0067 AGc4212 AGl1821 AGl363 AGl93GM SMa0551 SMb20288 SMb20849 SMb21293 SMc00673 SMc02414 SMc02416 SMc02421 BMEI1571 BMEII0369 mll8318 mlr5142 CC0961 CC2616 CLUSTER 2 SSO2770 Cgl0075 slr1237 codA yahJ ZcodA ZyahJ ECs0373 ECs0390 YPO0162 STM3334 PA0437 HI0842 PM0565 PM1882 RSc1594 AGl364 SMa2371 SMb20128 SMc02420 mll1290 mll2061 mlr5363 >COG0409 (Putative duplication confidence score 1.000) CLUSTER 1 AF1370 MA1139 MTH1072 MJ0993 MK0226 PH0879 PAB1559 aq_1157 CAC0811 slr1498 alr0696 hypD ZhypD ECs3585 STM2857 HP0898 jhp0835 Cj0625 CLUSTER 2 jhp0834 >COG0413 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1478G PH0951 PAB0570 PAE3410 SSO2400 APE0676 YBR176w SPAC5H10.09c aq_1973 TM1728 DR2615 CAC2914 Cgl0115 Rv2225 MT2284 ML1635 SA2392 lin2016 BS_panB BH1687 slr0526 all1522 panB ZpanB ECs0138 YPO3401 STM0182 BU197 VC0592 PA1598 PA4729 XF0229 NMB0870 NMA1088 RSc2630 HP1058 jhp0367 Cj0298c AGl2695 SMc01881 BMEI1592 mll0197 CC1651 CLUSTER 2 SMb20821 mll1731 mlr7631 >COG0417 (Putative duplication confidence score 1.000) CLUSTER 1 AF0497 AF0693m VNG0521G VNG6362G MA0885 MTH1208 MTH208 MJ0885_1 MJ0885_3 MJ0885_5 MK1039 Ta0450 Ta0907 TVN0660 TVN0823 TVN1045 PH1947_1 PH1947_3 PAB1128 PAE1113 PAE2109 PAE2180 SSO0081 SSO0552 SSO1459 APE0099 APE2098 APE2229 YDL102w YNL102w YPL167c SPAC3H5.06c SPAC688.10 SPBC336.04 ECU05g0990 ECU09g0430 alr7572 polB ZpolB ECs0064 YPO0518 STM0097 VC1212 PA1886 CLUSTER 2 YNL262w SPBC25H2.13c ECU10g1210 >COG0426 (Putative duplication confidence score 0.571) CLUSTER 1 AF0167 AF1520 MA1799 MA3381 MA3743 MTH1350 MTH157 MTH220 MJ0534 MJ0732 MJ0748 PH1085 PAB0596 TM0755 FN0512 FN1423 CAC1027 CAC2449 sll0217_1 sll0219_1 sll0550_1 sll1521_1 all0177_1 all0178_1 all3891_1 all3895_1 all4444_1 all4446_1 ygaK_1 Z4018_1 ECs3566_1 STM2840_1 CLUSTER 2 PH1971 PAB1188 aq_990 TM0013 CAC1498 PA4348 RSc2212 >COG0431 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1618H YLR011w SPCC4B3.06c DR0624 DR0962 Cgl0985 Cgl2851 Rv3054c MT3140 L171116 SPy1959 SP1471 SP1472_1 SP1546 SA0328 SA0518 lin2445 BS_yhdA BH2050 BH3321 slr0945 alr4777 ycbP yieF ZycbP ZyieF ECs1020 ECs4650 YPO3623 STM3850 VC2111 PA1204 PA2280 PA2357 PA3446 PM1472 NMB1796 NMA0666 RSc1337 RSp1495 AGc2746 AGpA462 AGpA786 SMb20573 SMc00183 SMc01960 SMc02650 mll2599 mll4710 mll4752 mll5191 mlr0414 mlr4323 mlr5227 CC1506 CC1536 MPN517 MG342 CLUSTER 2 Cgl1606 >COG0444 (Putative duplication confidence score 1.000) CLUSTER 1 AF1770 VNG2344G VNG2363Gm VNG2526G_1 MA0299 MA0698 MA0879 MA1245 MA1911 MA2479 MA3046 MA3457 MA3464 MA3908 MA4252 MA4598 Ta0265 Ta1325 TVN1329 PH0505 PH0810 PH1412 PH1959 PAB0094 PAB0630 PAB1196 PAB1346 PAB1874 PAE1297 PAE3317 SSO1276 SSO1282 SSO2616 SSO2670 SSO3046 APE0301 APE1399 APE1578 APE2261 aq_2160 TM0028 TM0058 TM0074 TM0303 TM0498 TM0501 TM1064 TM1152 TM1194 TM1220 TM1749 FN0399 FN1110 FN1501 FN1524 FN1649 DR1568 CAC0179 CAC3182 CAC3629 CAC3636 CAC3642 Cgl2601_2 L148976 L93148 SPy0296 SPy2003 SP1888 SA0847 SA0851 SA1212 SA2252 lin2297 BS_appD BS_dppD BS_oppD BH0028 BH0350 BH0570 BH1799 BH2077 BH3640 BH3646 ddpD dppD nikD oppD Z2226 ZdppD ZnikD ZoppD ECs1746 ECs2088 ECs4346 ECs4421 YPO2185 YPO3452 YPO4000 STM1743 STM3627 VC0617 VC1094 PA4505 HI1121 HI1185 PM0239 PM1907 RSc1884 RSc2867 HP0301 jhp0286 Cj1581c AGc2212 AGc4569 AGl1475 AGl2743 AGl2781 AGl3200 AGl360 AGl525 AGl868 AGpA366 AGpT258 SMa0108 SMa1365 SMa1371 SMa1647 SMa2081 SMb20478_2 SMc00789 SMc01528 SMc02423 SMc03125 BMEI0437 BMEII0200 BMEII0206 BMEII0222 BMEII0287 BMEII0490 BMEII0507 BMEII0863 mll0596 mll5437 mll9133 mll9147 mlr3400 mlr5419 mlr5516 mlr5893 mlr6085 mlr6674 mlr9270 CT201 CT690 CPn0201 CPn0682 BB0334 UU560_2 MYPU_2850 MYPU_4120 MPN217 MG079 CLUSTER 2 TVN0511 >COG0445 (Putative duplication confidence score 1.000) CLUSTER 1 YGL236c SPBC30B4.06c aq_761 TM0263 FN0007 FN1723 DR0027 CAC3733 L97777 SPy2185 SP0120 SA2500 lin2942 BS_gidA BH4061 sll0202 alr3561 gidA ZgidA ECs4683 YPO4130 STM3874 BU001 VC2775 PA5565 HI0582 PM1485 XF2106 NMB0193 NMA0074 RSc3328 HP0213 jhp0199 Cj1188c AGc5134 SMc02798 BMEI0007 mll4482 CC3755 RP056 RC0084 CT498 CPn0617 TP0044 BB0178 UU039 MYPU_2530 MPN557 MG379 CLUSTER 2 DR1681 >COG0449 (Putative duplication confidence score 0.714) CLUSTER 1 VNG0006G MA3023 MTH171 MJ1420_3 MK0127 PH0243 PAB2201 PAE3025 SSO0382 SSO1268 APE1205 YKL104c YMR084w YMR085w SPBC12C2.11 ECU07g1280 aq_301 TM0148 FN0452 DR0302 CAC0158 Cgl2219 Rv3436c MT3542 ML0371 L33556 SPy1280 SP0266 SA1959 lin0734 BS_glmS BH0268 sll0220 alr3464 glmS ZglmS ECs4671 YPO4118 STM3861 BU026 VC0487 PA5549 HI0429 PM1731 XF0141 NMB0031 NMA0276 RSc0178 HP1532 jhp1420 Cj1366c AGc3284 SMa0878 SMc00231 BMEII0685 mll0833 mlr6386 mlr6774 CC0118 CT816 CPn0968 TP0861 CLUSTER 2 MJ1420_1 Ta0479 TVN0825 SSO0016_1 FN0628 lin0034 lin2107 STM0573 STM4539 >COG0450 (Putative duplication confidence score 1.000) CLUSTER 1 AF0270 MA4103 MTH159 MJ0736 Ta0152 Ta0473 Ta0954m TVN0222 TVN0443 TVN0444 TVN1099 PH1217 PAB1673 PAE2085 SSO2121 APE2278 YBL064c YDR453c YML028w SPCC576.03c ECU03g1190 aq_486 aq_858 TM0807 FN1983 DR2242 Rv2428 MT2503 ML2042 L135351 SPy2079 SA0366 lin1645 BS_ahpC BS_ykuU BH2665 sll0755 slr1198 alr4404 alr4641 ahpC ZahpC ECs0644 YPO3194 STM0402 STM0608 BU182 VC0731 PA0139 PA0848 PA3450 PA3529 PM0795 XF1530 RSc0754 RSc1646 RSp0245 HP1563 jhp1471 Cj0334 AGc2729 SMb20964 BMEII0577 mll2432 mll3745 CC2918 RP327 RC0451 CT603 CPn0778 TP0509 CLUSTER 2 SPAC27D7.12c >COG0452 (Putative duplication confidence score 0.875) CLUSTER 1 AF1645 VNG0572G MA1280 MTH1216 MJ0913 MK0713 Ta0889 TVN0973 PH1444 PAB1897 PAE1204 SSO0210 APE1959 SPAC15E1.04_1 aq_815 TM1687 FN0711 DR0579 CAC1720 Cgl1566 Rv1391 MT1436 ML0543 L166912 SPy1222 SP0165 SP1231 SA1054 lin1939 BS_yloI BH2510 sll0250 all3111 dfp Zdfp ECs4514 YPO0048 STM3730 VC0215 PA5320 HI0953 PM1153 XF0149 NMB1658 NMA1916 RSc2461 HP0841 jhp0779 Cj0822 AGc552 SMc01161 BMEII0235 mlr3167 CC3712 BB0812 CLUSTER 2 YIL083c YKL088w YKR072c YOR054c SPCC4B3.18 Cgl1650 L167675 SPy1221 SP1230 BS_spoVFB BH2402 >COG0464 (Putative duplication confidence score 1.000) CLUSTER 1 AF0477 AF1297 AF2098 VNG1462G VNG1472G VNG1654G VNG1667G VNG2062G VNG6199G MA1813 MA3527 MA4064 MA4575 MTH1639 MJ1156 MK0486_1 MK0486_3 Ta0840 Ta1175 TVN0382 TVN0947 PH0687 PH1278 PH1840 PAB1478 PAB1789 PAB2086 PAE0696 PAE3171 SSO0176 SSO0421 SSO0909 SSO2420 SSO2831 APE0960 APE1367 APE2474 YBR080c YBR186w YDL126c YER047c YGR028w YGR270w YKL197c YLL034c YLR397c YNL329c YPL074w YPR173c SPAC1565.08 SPAC17A5.01 SPAC1834.11c SPAC2G11.06 SPAC31G5.19 SPAC328.04 SPBC16E9.10c SPBC56F2.07c SPBC947.01 SPBP22H7.05c SPCC24B10.10c SPCC553.03 ECU01g1230 ECU03g1410 ECU05g1140 ECU11g0840 ECU11g1030 DR0647 Cgl1461 Rv0282_2 Rv0435c Rv1798_2 Rv2115c Rv3868_2 Rv3884c_2 MT0295_2 MT0451 MT1847_2 MT2175 MT3981_2 MT3999_2 ML0055_2 ML1316 ML1536_2 ML2537_2 BS_spoVK BH2289 BH2363 slr0374 slr0480 all1872 all2243 all3141 all4233 all4296 alr7046 alr7200 alr7528 alr8015 PA0657 RSc1961 Cj0377 AGpT158 SMb20196 SMc02733 mlr2758 mlr6544 CLUSTER 2 MA2066 >COG0468 (Putative duplication confidence score 1.000) CLUSTER 1 AF0993 AF2096 VNG1665G VNG1711G_1 VNG2473G MA0074 MA3545 MTH1383 MTH1693 MJ0254 MJ0869 MK1032 MK1442 Ta1036 Ta1104 TVN0457 TVN0559 PH0119 PH0263_1 PH0263_3 PAB0164 PAB2270 PAE0654 PAE3238 SSO0250 APE0119 YDR004w YER095w YER179w SPAC20H4.07 SPAC644.14c SPAC8E11.03c ECU11g0820 aq_2150 TM1859 FN0547 DR2340 CAC1815 Cgl1910 Rv2737c_1 Rv2737c_3 MT2806_1 MT2806_3 ML0987_1 ML0987_3 L0260 SPy2116 SP1940 SA1128 lin1435 BS_recA BH2383 sll0569 all3272 recA ZrecA ECs3556 YPMT1.50c YPO3307 STM2829 VC0543 PA3617 HI0600 PM1817 XF0123 NMB1445 NMA1658 RSc0551 HP0153 jhp0141 Cj1673c AGc3441 SMc00760 BMEI0787 mlr0030 CC1087 RP761 RC1182 CT650 CPn0762 TP0692 BB0131 UU084 MYPU_2520 MPN490 MG339 CLUSTER 2 SPAC3C7.03c >COG0469 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0324G_1 MA3890 MJ0108 Ta0896 TVN1020 PH0570 PAB1441 PAE0819 SSO0981 APE0489 YAL038w YOR347c SPAC4H3.10c ECU09g0640 TM0208 FN1765 DR2635 CAC0518 CAC1036 Cgl2036 Rv1617 MT1653 ML1277 L0003 SPy1282 SP0897 SA1520_1 lin1605_1 BS_pykA_1 BH3163_1 sll0587 sll1275_1 all2564 all4008_1 pykA pykF ZpykA ZpykF ECs2383 ECs2564 YPO2064 YPO2393 STM1378 STM1888 BU319 VC0485 VC2008 VCA0708 PA1498 PA4329 HI1573 PM0653 XF0824 NMB0089 NMA0177 RSc0572 RSp1448 Cj0392c AGl2146 SMc04005 BMEI0292 mll3819 CC2051 CT332 CPn0097 BB0348 UU186 MYPU_2400 MPN303 MG216 CLUSTER 2 Cgl2847 >COG0474 (Putative duplication confidence score 1.000) CLUSTER 1 MA1678 MA2501 MA2833 MA4082 MA4378 MTH1001 MTH1516 MTH481 MTH482 MJ1226 Ta1045 YAL026c YDR038c YDR039c YDR040c YDR093w YER166w YGL006w YGL008c YGL167c YIL048w YMR162c YPL036w SPAC1071.10c SPAC24B11.12c SPAC4F10.16c SPAC6C3.06c SPAC821.13c SPAPB2B4.04c SPBC31E1.02c SPBC839.06 SPBC887.12 SPCC1020.01c ECU06g0930 ECU09g1440 aq_724 FN1022 CAC1269 CAC2137 Cgl1510 Rv0107c Rv0425c Rv0908 Rv1997 MT0116 MT0440 MT0931 MT2053 ML2671 L117821 L168650 L2866 L76107 L85514 SPy0623 SP1551 SP1623 lin0814 lin0832 lin2836 BS_yloB BH2515 sll0672 sll1076 sll1614 slr0822 all3245 all3375 alr1715_1 alr3723 mgtA ZmgtA ECs5219 YPO0451 YPO1661 STM3763 STM4456 PA1429 PA4825 SMa1155 BMEII0056 mlr6609 UU264 MYPU_1550 MPN209 MG071 CLUSTER 2 YEL031w YOR291w SPAC29A4.19c SPACUNK4.07c SPCC1672.11c ECU02g0330 ECU07g1500 >COG0476 (Putative duplication confidence score 1.000) CLUSTER 1 AF0531 AF0553 VNG0084G MA0255 MTH1571 Ta0844 TVN0943 PH0056 PAB2302 PAE1056 SSO0298 APE1594 YDR390c YHR111w_1 YHR171w YKL210w YPL003w YPR066w YPR180w SPAC24H6.12c SPAC2G11.10c_1 SPAC323.06c SPAC4C5.04 SPBC16H5.03c SPBC211.09 SPBC6B1.05c ECU02g1340 ECU03g0930 ECU03g1290_1 ECU09g0860 aq_1329 FN1755 DR2269 CAC2923 Cgl0209_1 Cgl1994_1 Rv1355c_1 Rv3116_1 Rv3206c_1 MT1398_1 MT3198_1 MT3301_1 ML0817_1 ML1751_1 SP0695 SA2071 lin1041 BS_moeB BS_yjbU BH1419 sll1536_1 all1432 all2906_1 alr7504 moeB thiF ZmoeB ZthiF ECs0904 ECs4915 YPO1494 YPO3741 STM0845 STM4162 VC0063 VCA0618 PA2103_1 PA4663 HI1449 PM0695 XF0466_2 NMB2062 NMA0373 RSc0351 HP0814 jhp0750 Cj1046c AGc111 SMc02864 BMEI1940 mll5577 mll6192_2 mlr6140 CC3726 CLUSTER 2 Rv2338c MT2401 >COG0479 (Putative duplication confidence score 1.000) CLUSTER 1 AF0682 VNG1308G MTH1850_1 MJ0092_1 MK0132_1 Ta1002 TVN0746 PAE0717 SSO2357 APE0946 YLL041c SPAC140.01 aq_553 aq_655 DR0951 Cgl0368 Rv0247c Rv1553 Rv3319 MT0261 MT1604 MT3420 ML0696 SA0996 BS_sdhB BH3091 sll0823 sll1625 all0945 frdB sdhB ZfrdB ZsdhB ECs0749 ECs5134 YPO0359 YPO1112 STM0735 STM4342 VC2088 VC2657 PA1584 HI0834 PM0200 XF1073 NMB0951 NMA1146 RSc1993 HP0191 jhp0177 Cj0410 Cj0438 AGc4790 SMc02466 BMEI0162 mll4260 CC3526 RP044 RC0069 CT591 CPn0790 CLUSTER 2 PAE2690 >COG0482 (Putative duplication confidence score 1.000) CLUSTER 1 YDL033c SPAC23H4.04 aq_1224 aq_899 TM0520 FN0765 FN1920 DR1759 CAC2233 Cgl1211 Rv3024c MT3108 ML1707 L52034 SPy2188 SP0118 SA1449 lin1547 BS_yrrA BH1261 sll0844 all1359 trmU ZycfB ECs1605 YPO1638 STM1234 BU261 VC1128 PA2626 HI0174 PM1336 XF1440 NMB1556 NMA1744 RSc2723 HP1335 jhp1254 Cj0053c AGl2270 SMc00659 BMEI0428 mlr2824 CC0897 RP306 RC0410 CT287 CPn0438 BB0682 UU402 MYPU_5580 MPN422 MG295 CLUSTER 2 aq_898 FN0563 HP0013 jhp0011 Cj1633 >COG0492 (Putative duplication confidence score 1.000) CLUSTER 1 AF1554 VNG1259G VNG2301G VNG6074G VNG6075G VNG6451G VNG6452G VNG7055 VNG7154 MA1368 MTH708 MJ1536 MK1561 Ta0984 TVN0470 TVN1129 PH1426 PAB0500 PAE1725 PAE2744 SSO2222 SSO2416 SSO2765 APE1061 YDR353w YHR106w ECU01g0680 ECU02g0940 aq_407 aq_500 TM0134 TM0869 FN1163 FN1984_1 DR0412 DR1982 DR2623 CAC0869 CAC1548 CAC3082 Cgl0673 Cgl3030 Rv3913 MT4032 ML2703_1 L00196 L0196 SPy0850 SP1458 SP1563 SA0719 SA1311 SA2162 lin2075 lin2489 lin2621 BS_trxB BS_ycgT BS_ypdA BS_yumC BH0657 BH1428 BH1429 BH1493 BH1623 BH3408 BH3571 slr0600 all0737_1 all4510 alr2204 trxB ZtrxB ECs0973 YPO1374 STM0958 BU314 VC1182 PA0849 PA2616 PA4170 HI1158 PM0573 XF1448 NMB1324 NMA1538 RSc1139 RSc2342 HP0825 HP1164 jhp0764 jhp1091 Cj0146c Cj0559 Cj1725 AGc2995 AGc3970 AGc405 SMa1890_2 SMa1891 SMc01159 SMc01224 BMEI0512 BMEI0958 mll0792 mll2552 mlr4645 CC2871 RP445 RP514 RC0618 RC0637 CT099 CPn0314 TP0814 BB0515 UU074 MYPU_7130 MPN240 MG102 CLUSTER 2 SA2370 >COG0493 (Putative duplication confidence score 0.875) CLUSTER 1 MA3787 Ta0414 TVN1157 PH0876 PH1873 PAB1214 PAB1738 PAE3227 APE0935 YDL171c_4 SPAPB1E7.07_4 aq_2064 TM1217_2 TM1640 DR0182 CAC0764 CAC1674 Cgl0185 Rv3858c MT3973 ML0062 L114827 SA0431 lin1844 BS_gltB BH1729 sll1027 aegA_2 gltD yeiT ygfK_2 ygfT_2 Z3401 Z4217_2 ZgltD ZyffG_2 ZygfT_2 ECs3038 ECs3330_2 ECs3751_2 ECs3759_2 ECs4092 YPO0342_2 YPO3558 STM2186 STM2479_2 STM3331 VC2374 VC2377 PA0440 PA5035 XF2709 RSc2964 Cj0009 AGl2104 SMc01814 SMc04026 BMEI1638 BMEII0039 mll1646 mll3029 CC3606 RP006_1 RC0005_2 TP0735 CLUSTER 2 YDR376w SPBC3B8.01c ECU11g1310 DR0496 Cgl2697 Cgl2757 Rv0886_2 Rv3106 MT0909_2 MT3189 ML0666 ML2134_2 >COG0503 (Putative duplication confidence score 0.923) CLUSTER 1 VNG0559G VNG2117C MA0717 MTH1320 MJ1655 MK0610 PH1691 PAB2035 PAE2071 SSO0233 APE0060 APE1080 YDR441c YML022w SPAC23A1.03 TM1384 FN1483 FN2073 DR0568 DR0878 DR1617 CAC0873 CAC2275 CAC3224 Cgl1615 Rv2584c MT2661 L134453 L159396 L22735 SPy0268 SPy0927 SPy1136 SP1577 SP1847 SP1979 SA0373 SA0454 SA1461 lin0231 lin1559 lin1998 BS_apt BS_purR BS_xpt BH0062 BH1241 BH1514 sll1430 alr4582 apt Zapt ECs0522 YPO3123 YPO4019 STM0483 VC1053 PA1543 PA5298 HI1230 PM0363 NMB1662 NMA1920 RSc0417 HP0572 jhp0519 Cj0927 AGc4069 AGl877 SMb21280 SMc02698 BMEI0476 mll2701 TP1039 BB0777 UU488 MYPU_3220 MPN395 MG276 CLUSTER 2 gpt Zgpt ECs0265 YPO3225 STM0317 BU251 VC2277 HI0674 HI0692 PM1369 AGc3180 SMc00945 BMEI0940 mll0141 >COG0504 (Putative duplication confidence score 1.000) CLUSTER 1 AF0252 VNG1830G MA3279 MTH419 MJ1174 MK0205 Ta0044m TVN0033 PH1792 PAB0231 PAE3518 SSO0201 APE1604 YBL039c YJR103w SPAC10F6.03c ECU11g0480 ECU11g0880 aq_1334 TM0803 DR1573 CAC2892 Cgl1383 Rv1699 MT1738 ML1363 L88252 SPy1894 SP0494 SA1929 lin2704 BS_ctrA BH3792 sll1443 alr5000 pyrG ZpyrG ECs3640 YPO3377 STM2953 BU416 VC2448 PA3637 HI1077 PM1872 XF1288 NMB1554 NMA1742 RSc1126 HP0349 jhp0323 Cj0027 AGc2984 SMc01025 BMEI0849 mll0606 CC1720 RP378 RC0523 CT183 CPn0236 TP0305 BB0575 UU284 MYPU_6660 CLUSTER 2 PA2268_1 AGpA703 >COG0512 (Putative duplication confidence score 1.000) CLUSTER 1 AF1602 VNG0386Gm VNG1646G MA2986 MTH1656 MJ0238 MK0436 Ta0807 TVN1023 PAB2046 PAE2459 SSO0894 APE2555 YKL211c_1 YNR033w_1 SPBC1539.09c_1 SPBP8B7.29_1 aq_549 TM0141_1 FN1731 DR0196_2 DR1766 CAC3162 Cgl0970_1 Cgl2972 Rv0013 MT0016 ML0015 L0053 L0178 SPy1991 SP1816 SA0668 SA1200 lin1673 lin2892 BS_pabA BH0091 slr0055 all0269 all0414_2 alr3233_2 alr3443_1 pabA trpD_1 ZpabA ZtrpD_1 ECs1835_1 ECs4211 YPO0169 YPO2207 STM1724_1 STM3469 BUpT02 BUpT04 VC1173 VC2619 PA0649 PA1002 HI1171 HI1388 PM0583 PM1463 XF0211 XF1915 NMB0966 NMA1163 RSc2882 HP1281 jhp1202 Cj0346_1 Cj0861c AGc4162_2 SMc02725_2 BMEI0449_2 mlr2774_2 CC1897 CLUSTER 2 PA1903_2 PA4214_2 >COG0513 (Putative duplication confidence score 1.000) CLUSTER 1 AF2254 MA3956 MTH203 MJ0669 Ta0297 TVN1303 SSO1889 SSO2036 YBR142w YBR237w YDL031w YDL084w YDL160c YDR021w YDR194c YDR243c YFL002c YGL064c YGL078c YGL171w YHR065c YHR169w YJL033w YJL138c YKR024c YKR059w YLL008w YLR276c YMR290c YNL112w YNR038w YOR046c YOR204w YPL029w YPL119c SPAC1006.07 SPAC1093.05 SPAC17G6.14c SPAC1F5.10 SPAC1F7.02c SPAC22F3.08c SPAC30D11.03 SPAC31A2.07c SPAC637.11 SPAC823.08c SPBC12C2.06 SPBC17D1.06 SPBC21H7.04 SPBC24C6.02 SPBC4F6.07c SPBC543.06c SPBC691.04 SPBC776.09 SPBP8B7.16c SPCC10H11.01 SPCC1494.06c SPCC1795.11 SPCC285.03 SPCC63.11 ECU02g0670 ECU02g1520 ECU05g1270 ECU06g1250 ECU07g1060 ECU08g1080 ECU09g1200 ECU09g1640 ECU10g0440 ECU10g0690 ECU10g1680 aq_613 FN1975 DR0335 DR1624 CAC0778 CAC0784 CAC2748 CAC3010 Cgl0747 Cgl1130 Cgl1415 Rv1253 Rv3211 MT1292 MT3307 ML0811 L0339 L0340 SPy1369 SPy1415 SPy1659 SP0761 SP1483 SP1586 SA1387 SA1885 lin0859 lin1214 lin1488 lin1833 BS_deaD BS_ydbR BS_yfmL BS_yqfR BH1385 BH2384 BH3348 slr0083 alr1223 alr4718 dbpA deaD rhlB rhlE srmB ZdbpA ZdeaD ZrhlB ZrhlE ZsrmB ECs0875 ECs1927 ECs3442 ECs4043 ECs4713 YPO1776 YPO2708 YPO3488 YPO3869 STM0820 STM1655 STM2643 STM3280 STM3914 BU372 VC0305 VC0660 VC1407 VC2564 VCA0061 VCA0204 VCA0768 VCA0804 VCA0990 PA0428 PA0455 PA2840 PA3466 PA3861 PA3950 HI0231 HI0422 HI0892 PM1112 PM1840 PM1921 XF0192 XF0252 XF2696 NMB1368 NMB1422 NMA1580 NMA1634 RSc0539 RSc0622 RSc0952 RSc2211 HP0247 jhp0232 AGc3366 AGc4238 AGc4993 AGl1362 SMb20880 SMc00522 SMc01090 SMc03877 BMEI0275 BMEI0934 BMEI1035 BMEI1824 mll0224 mlr0349 mlr3852 mlr4393 CC0657 CC0835 CC1847 RP669 RC1020 TP0770 UU582 MYPU_0690 MPN443 MPN623 MG308 MG425 CLUSTER 2 YBL111c YBL112c YDR545w YEL077c YER190w YFL066c YGR296w YHL050c YHR218w YHR219w YIL177c YJL225c YLL066c YLL067c YLR466w YLR467w YML133c YNL339c YOR396w YPL283c YPR204w >COG0514 (Putative duplication confidence score 1.000) CLUSTER 1 MA4507 APE1353_2 YMR190c SPAC212.11 SPAC2G11.12 ECU07g1130 FN0578 DR1289 CAC2687 Cgl0869 L0268 SA0676 SA1313 lin2056 lin2900 BS_recQ BS_yocI BH1607 slr1536 alr0205 alr3451 alr4842 recQ Z4802 Z4803 ZrecQ ECs4283 ECs4284 ECs4752 YPO3833 STM3958 VC0196 PA3344 HI0728 PM1427 XF1381 NMB0274 NMA2213 RSc3025 AGc92 SMc01566 mll4050 CC3465 TP0103 CLUSTER 2 Z4801 ECs4282 >COG0516 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1001G_1 MTH142_1 MJ1616_1 MK1600_1 Ta0219_1 TVN1375_1 PH0307_1 PAB1250_1 YAR073w_1 YHR216w_1 YLR432w_1 YML056c_1 SPBC2F12.14c_1 aq_2023_1 TM1347_1 FN1231_1 DR1878_1 CAC2701_1 Cgl0587_1 Cgl2623_1 Rv1843c_1 Rv3411c_1 MT1891_1 MT3519_1 ML0387_1 ML2066_1 L21264_1 SPy2206_1 SP2228_1 SA0375_1 lin0179_1 lin2901_1 BS_guaB_1 BH0020_1 guaB_1 ZguaB_1 ECs3370_1 YPO2871_1 STM2511_1 VC0767_1 PA3770_1 HI0221.1_2 HI0221_1 PM0295_1 XF2430_1 NMB1201_1 NMA1372_1 RSc1429_1 HP0829_1 jhp0768_1 Cj1058c_1 AGc1108_1 SMc00815_1 BMEII0896_1 mlr8350_1 CC1617_1 CPn0172a BBB17_1 CLUSTER 2 VNG1001G_3 MTH142_3 MJ1616_3 MK1600_3 Ta0219_3 TVN1375_3 PH0307_3 PAB1250_3 APE1507 YAR073w_3 YAR075w YHR216w_3 YLR432w_3 YML056c_3 SPBC2F12.14c_3 aq_2023_3 TM1347_3 FN1231_3 DR1878_3 CAC2701_3 CAC3471 Cgl0587_3 Cgl0588 Cgl2623_3 Rv1843c_3 Rv3410c Rv3411c_3 MT1891_3 MT3518 MT3519_3 ML0387_3 ML0388 ML2066_3 L158186 L21264_3 SPy1135 SPy2206_3 SP1249 SP2228_3 SA0375_3 SA1172 lin0179_3 lin2901_3 BS_guaB_3 BS_yumD BH0020_3 slr1722 alr0051 guaB_3 guaC ZguaB_3 ZguaC ECs0108 ECs3370_3 YPO2871_3 YPO3428 STM0141 STM2511_3 BU204 VC0767_3 VCA0197 PA3770_3 HI0221_3 PM0295_3 XF2430_3 NMB1201_3 NMA1372_3 RSc1429_3 HP0829_3 HP0854 jhp0768_3 jhp0790 Cj1058c_3 AGc1108_3 SMc00815_3 BMEII0896_3 mlr8350_3 CC1617_3 CPn0172 BBB17_3 >COG0532 (Putative duplication confidence score 1.000) CLUSTER 1 AF0768 VNG1997G MA1525 MTH259 MJ0262_1 MJ0262_3 MK1595 Ta1112 TVN0453 PH1095_1 PH1095_3 PAB0755_1 PAB0755_3 PAE1513 SSO0228 APE2374 YAL035w_2 YOL023w SPAC56F8.03 SPBC1271.15c ECU09g0070 aq_2032 TM0775 FN2020 DR1799 CAC1802 Cgl1939 Rv2839c MT2905 ML1556 L0372 SPy1721 SP0556 SA1112 lin1362 BS_infB BH2413 slr0744 alr3832 infB ZinfB ECs4049 YPO3496 STM3286 BU377 VC0643 PA4744 HI1284 PM0759 XF0235 NMB1643 NMA1897 RSc1289 HP1048 jhp0377 Cj0136 AGc131 SMc02914 BMEI1965 mlr5554 CC0042 RP552 RC0816 CT096 CPn0317 TP0891 BB0801 UU320 MYPU_2050 MPN155 MG142 CLUSTER 2 MK1564 >COG0542 (Putative duplication confidence score 1.000) CLUSTER 1 MTH284 YDR258c YLL026w SPBC16D10.08c SPBC4F6.17c ECU11g1420 aq_1296 aq_1672 TM0198 TM1391 FN1941 DR0588 DR1046 DR1117 CAC0904 CAC0959 CAC1824 CAC3189 Cgl1714 Cgl1741 Cgl2622 Cgl2721 Rv0384c Rv3596c MT0397 MT3703 ML0235 ML2490 L0221 L0222 L166407 SPy0888 SPy1509 SPy2073 SP0338 SP0820 SP2194 SA0483 SA0835 SA2336 lin0264 lin0996 lin2309 BS_clpC BS_clpE BH0103 BH2179 sll0020 slr0156 slr1641 alr1963 alr2322 alr2999 alr5084 clpA clpB Z0254 ZclpA ZclpB ECs0223 ECs0968 ECs3455 YPO0506 YPO0971 YPO1368 YPO1471 YPO2946 YPO3275 YPO3599 STM0272 STM0945 STM2660 VC0711 VC1144 VCA0116 PA0090 PA0459 PA1662 PA2371 PA2620 PA2725 PA3365 PA4542 HI0859 PM1704 XF0381 XF1443 NMB0836 NMB1472 NMA1045 NMA1683 RSc1335 RSc2464 RSp0749 HP0033 HP0264 jhp0029 jhp0249 Cj0509c Cj1108 AGc2524 AGl1041 AGl1346 SMc02109 SMc02433 BMEI0195 BMEI0816 mll0663 mll2335 mll3429 CC0878 CC2468 RP036 RC0059 CT113 CT286 CPn0144 CPn0437 TP0071 TP0549 TP0801 BB0369 BB0834 UU391 MPN531 MG355 CLUSTER 2 Rv2667_2 MT2741_2 >COG0543 (Putative duplication confidence score 1.000) CLUSTER 1 AF0528 MA0584 MA3786 MTH1212 MJ1446 MK0564 Ta0047 Ta0403 TVN0004 TVN1171 PH0878 PH1291 PH1874 PH1965 PAB0639 PAB1150 PAB1213 PAB1737 PAB1785 SSO0612 YIL043c YKL150w YML087c YML125c SPAC17H9.12c SPCC970.03 aq_1305 aq_2098 TM0334 TM1639 FN0423 CAC1514 CAC1860 CAC2651 Cgl2354_1 Cgl2732 Rv0385 Rv1937_1 MT0398 MT1987_1 L183563 SP0963 lin1948 BS_pyrDII BH2535 ubiB ZubiB ECs4772 YPO3116 YPO3768 STM2093 STM2549 STM3979 VC0312 PA2514 PA2516 PA4331 PA5236 NMB1359 NMA1571 RSc1091 RSc2434 AGc2205 RP006_2 RC0005_3 TP0736 CLUSTER 2 YOR037w >COG0545 (Putative duplication confidence score 1.000) CLUSTER 1 YDR519w YLR449w_2 YML074c_2 YNL135c SPAC27F1.06c SPBC1347.02 SPBC839.17c DR1839 Cgl0807 slr1761 alr0577 fklB fkpA ZfklB ZfkpA ECs4198 ECs5185 YPO0195 YPO3532 STM3453 STM4397 BU533 VC0354 VC2568 VCA0661 PA3262 PA3717 PA4572 PA5254 HI0574 PM1349 PM1898 XF1605 NMB0027 NMB1567 NMA0273 NMA1756 RSc0784 RSc1565 CC2799 CC3636 CT541 CPn0661 TP0862 CLUSTER 2 XF0644 >COG0548 (Putative duplication confidence score 1.000) CLUSTER 1 AF1280 MA4515 MTH183 MJ0069 MK1631 PH1718 PAB0292 PAE2882 SSO0156 APE1461 YER069w_1 SPAC4G9.09c_1 aq_2068 TM1784 DR1420 DR2442 CAC2389 Cgl1363 Rv1654 MT1692 ML1408 L0107 SA0176 lin1631 BS_argB BH2898 slr1898 alr1245 argB ZargB ECs4888 YPO3925 STM4122 BU049 VC2643 PA5323 PM1119 XF1001_1 NMB1074 NMA1275 RSc0033 Cj0226 AGc666 SMc01726 BMEII0273 mlr4826 CC0283 RC0139 CLUSTER 2 argA_1 ZargA_1 ECs3675_1 YPO1022_1 STM2992_1 BU456_1 VC2316_1 PA5204_1 PM0828_1 NMB1876_1 NMA0580_1 RSc1250_1 >COG0553 (Putative duplication confidence score 1.000) CLUSTER 1 AF2350 VNG6139G VNG7099 MA0189 TVN0682 PH0900 PAB0591 SSO1653 SSO1655 APE0413 YAL019w YBR073w YBR114w YBR245c YDR334w YER164w YFR038w YGL150c YGL163c YIL126w_1 YJR035w YLR032w YLR247c YOR191w YOR290c_1 YOR304w YPL082c SPAC11E3.01c SPAC1250.01_1 SPAC13G6.01c SPAC144.05 SPAC15A10.03c SPAC1783.05 SPAC17A2.12 SPAC20G8.08c SPAC22F3.03c SPAC25A8.01c SPAC3G6.01 SPAC3G6.12 SPBC1826.01c SPBC23E6.02 SPBC582.10c SPBP35G2.10 SPCC1235.05c SPCC1620.14c_1 SPCC330.01c SPCP25A2.02c ECU01g0350 ECU03g1530 ECU06g0820 ECU09g0410 ECU09g1890 ECU10g1320 TM0990 FN1160 FN1386 DR1258 DR1259 DRB0136 CAC2996 CAC3303 CAC3441 Cgl0717 Cgl1138 Cgl1599 Cgl1697 Rv2101 MT2161 L104021 SPy0342 SP1523 lin1348 lin1685 BS_yqhH BS_ywqA BH0969 BH2817 BH2913 sll1366 all4900 all7026 all7172 alr4398 hepA Z0067 Z5899 ECs0063 ECs5261 YPO0517 STM0096 VC1760 VC2506 PA0799 PA3308 HI0616 PM1837 XF0680 XF2295_1 XF2528 SMc02152 CT555 CT708 CPn0835 CPn0849 MPN020 MG018 CLUSTER 2 FN0414 pli0027 PM0696 >COG0557 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2647G YDR293c_2 YMR287c_2 YOL021c SPAC2C4.07c SPBC26H8.10 SPBC609.01 SPCC16C4.09 ECU03g0700 aq_2046 TM0722 FN0608 DR0020 DR0353 CAC0715 Cgl2185 L0323 L25961 SPy0503 SP0975 SA0735 lin2543 BS_yvaJ BH3553 sll1290 sll1910 all4450 alr1240 vacB ZvacB ECs5155 YPO0380 STM4368 BU565 VC2599 PA4937 HI0861 PM1954 XF1987 NMB0282 NMB1200 NMA1371 NMA2205 RSc1228 RSc2779 HP1248 jhp1169 Cj0631c AGc2395 SMc01365 BMEII0665 mll0040 mlr0841 CC2453 CT397 CPn0504 TP0805 UU057 MYPU_3510 MPN243 MG104 CLUSTER 2 SPCC23B6.06 >COG0563 (Putative duplication confidence score 1.000) CLUSTER 1 AF0676 VNG1724G MA1096 PH1117 PAB0739 YDR226w YER170w YKL024c SPAC4G9.03 SPCC1795.05c ECU06g0650 aq_078 TM1479 FN1298 DR2117 CAC3112 Cgl0542 Rv0733 MT0757 ML1832 L140714 SPy0074 SP0231 SA2027 lin2760 BS_adk BH0155 sll1059 sll1815 all4196 alr0068 adk Zadk ECs0527 YPO3118 STM0488 BU484 VC0986 PA3686 HI0349 PM0284 XF0275 NMB0823 NMA1032 RSc2533 HP0618 jhp0561 Cj0639c AGc3521 SMc01288 BMEI0778 mlr0322 CC1269 RP638 RC0985 CT128 CPn0244 TP0595 BB0417 UU251 MYPU_5670 MPN185 MG171 CLUSTER 2 FN0012 DR0202 DR0494 DR0974 DR2273 CAC2481 Cgl0315 Cgl1057 L16101 L88237 SPy1995 SP0837 lin1175 lin1449 BS_yqaC BH1014 all3160 alr4795 PA4799 AGc2655 SMc01742 mlr5488 >COG0565 (Putative duplication confidence score 1.000) CLUSTER 1 AF1801 VNG1347C MA0682 MTH1849 MJ1476 MK0519 Ta1010m TVN0579 SSO0747 APE0555 DR0576 slr0120 alr4542 yfhQ Z3799 ECs3398 YPO2898 STM2545 VC0746 PA3817 HI0380 PM0316 XF2475 NMB1348 NMA1560 RSc1161 AGc3426 SMc00482 BMEI0794 mlr0038 CC2520 RC0160 CLUSTER 2 lasT ZlasT ECs5361 STM4600 >COG0567 (Putative duplication confidence score 1.000) CLUSTER 1 YIL125w SPBC3H7.03c DR0287 Cgl1105_3 Rv1248c_3 MT1286_3 ML1095_3 SA1245 BS_odhA BH2206 sucA ZsucA ECs0751 YPO1113 STM0736 BU302 VC2087 PA1585 HI1662 PM0277 XF1550 NMB0955 NMA1149 RSc1269 RSp1364 AGc4776 SMc02482 BMEI0140 mll4301 CC0339 RP180 RC0227 CT054 CPn0378 CLUSTER 2 Cgl1105_1 Rv1248c_1 MT1286_1 ML1095_1 >COG0568 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1452 aq_1490 TM1451 FN1317 FN1318 DR0916 CAC1300 CAC2052 Cgl1865 Cgl1873 Rv2703 Rv2710 MT2777 MT2783 ML1014 ML1022 L0139 SPy0782 SP1073 SA1390 lin1491 BS_sigA BH1376 sll0184 sll0306 sll1689 sll2012 slr0653 all1692 all5263 all7179 all7608 all7615 alr3800 alr3810 alr4249 rpoD rpoH rpoS ZrpoD ZrpoH ZrpoS ECs3595 ECs3950 ECs4310 YPO0643 YPO3355 YPO3811 STM2924 STM3211 STM3568 BU025 BU055 VC0150 VC0517 VC0534 PA0376 PA0576 PA3622 HI0269 HI0533 PM1241 PM1584 XF1350 XF2691 NMB0712 NMB1538 NMA0917 NMA1737 RSc0374 RSc1207 RSc2215 HP0088 jhp0081 Cj1001 AGc3929 AGc4439 SMc00646 SMc01563 SMc03873 BMEI0280 BMEI0378 BMEI0532 mll2466 mlr3741 mlr3862 CC3047 CC3098 RP303 RP858 RC0407 RC1329 CT615 CPn0756 TP0493 TP1012 BB0712 BB0771 UU349 MYPU_4540 MPN352 MG249 CLUSTER 2 DR2482 >COG0578 (Putative duplication confidence score 0.538) CLUSTER 1 VNG1070Gm VNG1969G Ta0633 TVN0840 SSO2526 glpA ZglpA ECs3126 YPO3826 STM2284 VCA0747 PA4991 HI0685 PM1442 CLUSTER 2 YIL155c SPCC1223.03c ECU10g0870 DR1019 Cgl1608 Rv2249c Rv3302c MT2309 MT3401 ML0713 L0013 SPy1683 SP2185 SA1142 lin1331 BS_glpD BH1095 sll1085 glpD ZglpD ECs4269 YPO3937 STM3526 VCA0657 PA3025 PA3584 XF2266 RSc3045 AGl1902 AGl1938 AGl2503 SMb20499 SMc01620 SMc02520 BMEI1749 BMEII0429 mll0710 mlr7270 BB0243 >COG0584 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1846C Ta0634 TVN0841 PAB0180 PAE1058 APE0262 YPL110c_3 YPL206c SPAC4D7.02c SPAPB1E7.05_3 ECU01g1380 TM1621 FN1891 FN1908 FN1954 DR0542 DR2084 DRB0111_2 CAC0430 CAP0015 Cgl1354 Cgl2845 Rv0317c Rv2277c Rv3842c MT0332 MT2337 MT3950 ML0074 L1007 L18600_2 L58914_2 SPy0839_2 SP0994_2 SA0036 SA0220_2 SA0820 SA0969 SA1542 lin0625_2 lin1330 BS_glpQ BS_yhdW BS_yqiK BH1080 BH1776 BH3700 all0275_2 all1051 glpQ ugpQ ZglpQ ZugpQ ECs3124 ECs4295 YPO2028 YPO2035 YPO3232 YPO3792 YPO3827 STM2282 STM3553 VC1554 VCA0136 PA0347 PA2352 PA2990 PA4792 HI0689 PM1444 RSc0502 RSc1268 AGc2533 AGl1291 AGl598 AGpA81 AGpT266 SMc02104 SMc02646 SMc03129 BMEI0819 mlr0660 mlr8455 CC2157 CC3172 CC3272 TP0257 MYPU_2630 MPN420 MPN566 MG293 MG385 CLUSTER 2 mlr9158 >COG0587 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1008 TM0461 FN1383 DR0507 CAC0516 CAC1223 Cgl2079 Rv1547 MT1598 ML1207 L0307 SPy1284 SP0895 SA1525 lin1609 BS_dnaE BS_yorL BH3169 sll1572 slr0603 all3578 alr1054 dnaE ZdnaE ECs0186 YPO1059 STM0231 BU238 VC2245 PA3640 HI0739 PM0034 XF0204 NMB1827 NMA0632 RSc2205 HP1460 jhp1353 Cj0718 AGc2379 SMc01375 BMEI1137 mll0870 CC1926 RP778 RC1211 CT545 CPn0666 TP0669 BB0579 UU415 MYPU_7190 MPN378 MG261 CLUSTER 2 Cgl0620 Rv3370c MT3480 PA0669 RSp0800 AGl3173 AGpAbx5 AGpT175 SMa0892 SMc03788 BMEI1876 mlr4428 CC3211 >COG0590 (Putative duplication confidence score 1.000) CLUSTER 1 MA2341 MA2559 MA3407 YJL035c YLR316c YPR062w SPAP27G11.04c SPBC16D10.10_2 SPCC965.14c ECU09g0990 ECU09g1960 aq_903 DR0603_1 DR1207_2 CAC0123 Cgl0229 Cgl0626 Rv0828c Rv3114 Rv3752c MT3196 MT3859 ML2474 L127182 SP0020 SA0516 lin2867 BS_yaaJ BS_yknA BH0033 sll0051 sll1631 all3284 all4872 alr4634 yfhC ZyfhC ECs3425 YPO2923 STM2568 BU255 VC0864 PA2499 PA3767 HI0906 PM0078 XF1012 NMB0933_2 NMA1129 RSc1451 AGc1234 SMc00905 BMEII1040 mll2512 mll8252 CC0231 RP831 RC1285 CT844 CPn1001 CLUSTER 2 slr1161 AGc2681 SMc01052 BMEII0619 mll5129 >COG0593 (Putative duplication confidence score 1.000) CLUSTER 1 aq_322 TM0926 DR0002 CAC0001 Cgl0001 Rv0001 MT0001 ML0001 L0274 SPy0002 SP0001 SA0001 lin0001 BS_dnaA BH0001 sll0848 alr2009 dnaA ZdnaA ECs4637 YPO4097 STM3838 BU012 VC0012 PA0001 HI0993 PM1161 XF0001 NMB1903 NMA0552 RSc3442 HP1529 jhp1417 Cj0001 AGc1670 AGc566 SMc01167 BMEI1362 BMEI1943 mll5581 CC0008 CC1058 RP601 RC0916 CT250 CT275 CPn0309 CPn0424 TP0001 BB0437 UU001 MYPU_0010 MPN686 MG469 CLUSTER 2 yfgE Z3759 ECs3358 YPO3071 STM2496 PA0947 HI1225.1 PM0017 XF0590 NMB1076 NMA1279 RSc2625 AGc2114 SMc00617 BMEI1238 mlr7968 CC1711 RP631 RC0979 >COG0595 (Putative duplication confidence score 0.800) CLUSTER 1 VNG1149Cm MA0605 MTH49 MJ0861 MK0775 PH1071 PAB1751 FN1210 DR2417m CAC1683 Cgl1924 Rv2752c MT2822 ML1512 L61727 L89418 SPy1020 SPy1876 SP0121 SP0613 SA0940 SA1118 lin1026 lin1473 BS_ykqC BS_ymfA BH2398 BH2662 slr0551 all3678 HP1430 jhp1323 Cj1710c AGc2368 SMc01929 BMEI1143 mll1350 CC1934 RP441 RC0613 UU509 UU570 MYPU_7040 MYPU_7050 MPN280 MPN621 MG139 MG423 CLUSTER 2 MTH912 MK0315 MK1258 MK1274 PH0466 PAB1035 TM0663 >COG0602 (Putative duplication confidence score 0.722) CLUSTER 1 AF0441 VNG6305C MA4197 MTH1227 MJ1645 MK0818 Ta1359 TVN0296 PH0635 PAB1446 PAE0010 SSO0624 aq_2035 CAC3625 SA0665 BS_ykvL BH2242 sll2011 alr4161 ygcF ZygcF ECs3633 YPO3374 STM2951 VC1365 PA0975 HI1189 PM0184 XF1894 NMB0529 NMA0707 RSc1449 HP0934 jhp0868 Cj0160c AGl2955 SMb20938 BMEI0093 mll5796 msl8680 CC3159 RP607 RC0933 CLUSTER 2 MTH287 FN0312 CAC0481 L72609 SPy2105 SP0205 SA2409 lin0306 alr0731 nrdG ZnrdG ECs5214 YPO3455 STM4451 VCA0512 PA2726 HI1155 PM0941 >COG0608 (Putative duplication confidence score 1.000) CLUSTER 1 AF0075 AF0291 AF0699 AF0735 VNG2333C MA0823 MA2569 MA3432 MTH1422 MTH164 MJ0831 MJ0977 MJ1071 MK0061 MK0204 MK1592 Ta0527 Ta1132m TVN1003 TVN1209 PH0059 PAB0034 PAB1596 PAE2792 PAE2794a SSO0295 aq_2155 TM1546 FN0374 FN2018 DR1126 CAC1198 CAC2232 CAC2276 Cgl1691 L0259_1 SPy0926_1 SP0611_1 SA1462_1 lin1560_1 BS_yorK BS_yrvE_1 BH1240_1 sll1354_1 all1989 alr5127 recJ ZrecJ ECs3764 YPO0890 STM3042 VC2417 PA3725 HI1214 PM0192 XF1110 NMB0842 NMA1052 RSc1115 HP0348 jhp0322 Cj0028 AGc2915 SMc00292 BMEI0728 mll0927 CC1386 RP528 RC0761 CT447 CPn0563 TP0704 BB0254 CLUSTER 2 HP0425 HP1410 jhp1303 >COG0616 (Putative duplication confidence score 0.636) CLUSTER 1 AF0856 MA2409 MJ0137 MJ1495 PH0282 PAB2437 APE2212 aq_814 TM0916 Cgl1774 alr3825 mlr4682 CLUSTER 2 VNG0620G MA4047 MTH806 MJ0651 Ta0074 TVN0029 PH1569 PAB1960 PAE2794_1 PAE3679_1 aq_2080 FN0873 FN1271 DR2096 Rv0724 MT0749 ML1839 lin1627 BS_yteI BH3198 sll1703 slr0021 all4013 all4590 sohB sppA Z1886 Z2134 Z2361 ZsohB ZsppA ECs1108 ECs1633 ECs1844 ECs2176 ECs2472 ECs2732 YPO2162 YPO2216 STM1295 STM1716 STM2605 BU283 VC1060 VC1994 PA1832 PA2973 HI1541 HI1682 PM0585 PM0671 XF2685 NMB1587 NMB2127 NMA0305 NMA1778 RSc0858 RSc1044 HP1435 jhp1328 Cj0068 AGc1130 AGc588 SMc00857 SMc01135 BMEI1535_2 BMEI1793 mll7424 mlr3201 CC0927 RP398 RP525 RC0545 RC0758 CT494 CPn0613 TP0997 >COG0619 (Putative duplication confidence score 1.000) CLUSTER 1 AF0730 AF1842 VNG1632G MA0393 MA0869 MA1419 MA1748 MA3552 MA4019 MA4022 MA4343 MTH132 MTH1705 MTH453 MJ1089 MJ1571 MK0181 PH0131 PAB2261 SSO1892 SSO2031 APE2155 TM1868 FN2006 DR2468 CAC0772 CAC1367 CAC3100 Cgl1056 Cgl1915 Cgl2771 Rv2325c MT2387 ML0849 L125503 L77627 SPy1788 SPy2193 SP0484 SP1437 SP2219 SA0927 SA2019 SA2475 lin1169 lin2748 lin2783 BS_ybaF BS_ykoC BH0166 sll0384 slr1978 alr0484 alr3945 alr3948 Z4269 ECs3801 STM2021 STM3073 HI1619 AGc1361 SMc00963 BMEI0637 UU537 MYPU_3880 MPN195 MPN431 MG181 MG302 CLUSTER 2 Cgl0520 >COG0621 (Putative duplication confidence score 1.000) CLUSTER 1 AF1247 VNG1861C MA1153 MTH826 MJ0867 MK1081 Ta0256 TVN1338 PH1875 PAB1134 PAE2939 SSO2380 APE1530 aq_284 aq_474 TM0653 TM0830 FN0475 FN1214 DR1150 CAC1286 CAC1838 Cgl1904 Rv2733c MT2803 ML0989 SA1134 SA1405 BS_ymcB BS_yqeV BH1351 BH2372 sll0996 alr1312 yleA ZyleA ECs0699 YPO2620 STM0670 BU441 VC0962 PA3980 HI0019 PM1001 XF0906 NMB1866 NMA0590 RSc0531 HP0269 HP0285 jhp0254 jhp0270 Cj0458c Cj1006c AGc4885 AGc623 SMc01115 SMc03855 BMEI0132 BMEI1976 mlr4319 mlr5534 CC3684 RP416 RP808 RC0580 RC1246 CPn0477 TP0269 TP0754 CLUSTER 2 aq_849 TM1862 DRA0189 CAC1813 slr0082 alr1222 yliG ZyliG ECs0915 STM0852 VC2620 PA0916 PM1571 RSc1636 HP0734 jhp0671 Cj1454c BMEII0703 mlr0499 CPn0251 >COG0624 (Putative duplication confidence score 1.000) CLUSTER 1 AF0051 AF0522 AF0904 MJ0457 MJ1497 MK0128 MK1581 Ta0934m TVN1079 PH0265 PH1153 PH1288 PH1715 PAB0294 PAB0581 PAB0723 PAE2335 PAE2798 SSO0162 SSO0790 SSO1007 SSO1538 SSO2737 APE0632 APE1467 APE1917 YBR281c_2 YFR044c YJL172w SPAC24C9.08 SPBC1198.08 SPCC757.05c aq_547 TM0129 TM1666 FN0278 DR1413 DR2017 DR2025 DR2493 CAC2723 Cgl1085 Cgl2670 Cgl2768 Rv1202 Rv2141c Rv2522c MT1240 MT2199 MT2598 ML1059 ML1193 ML1288 L0115 L59867 SPy1070 SPy1542 SP0150 SP0623 SP2153 SA1572 SA1814 lin0289 lin1661 BS_argE BS_ylmB BS_ytjP BH0352 BH1059 BH2678 BH3272 BH3875 argE dapE ygeY ZargE ZdapE ZygeY ECs3334 ECs3745 ECs4886 YPO3053 YPO3928 STM2483 STM4120 BU047 BU095 VC2152 VC2645 PA1162 PA2787 PA5206 PA5390 HI0102 PM0932 PM1022 PM1117 XF0116 XF1000 NMB1530 NMA1730 RSc1302 RSc1390 RSc1641 RSc3093 RSc3273 RSp0273 RSp0487 HP0212 jhp0198 Cj1048c AGc165 AGc647 AGl2847 AGpA709 SMa1836 SMc01096 SMc02852 BMEI1827 BMEII0268 mll3297 mll6018 mll7049 mlr1185 mlr4849 mlr7167 CC0275 CC0736 CC1605 CC3239 CC3631 RP874 RC1347 CPn0980 CLUSTER 2 SSO2719 DR1154 lin0541 BS_yurH BH0761 ylbB ZylbB ECs0578 YPO3249 STM0527 PA0444 HI0588 PM0160 AGc4327 AGl3478 SMb21435 SMc01820 BMEI1643 mll1631 mll7658 mlr0967 mlr7938 CC2603 >COG0630 (Putative duplication confidence score 1.000) CLUSTER 1 AF0338 AF0659 AF0996 AF1049 VNG0823G VNG0949G MA0234 MA1299 MA3056 MA3082 MA3096 MA3975 MJ0900 MJ1287 MJ1288 Ta0559 Ta0901 Ta0904 TVN0613 TVN1012 TVN1015 PH0557 PH0650_3 PH1309 PAB0563 PAB1386 PAB1457_3 PAE0773 PAE2119 PAE2399 PAE2778 SSO0120 SSO2316 SSO2387 SSO2680 APE0695 APE1896 APE2208 XFa0015 HP0525 HP1421 jhp0474 jhp1316 AGpAbx65 AGpT14 SMa1302 BMEII0035 mlr9260 CC2423 RP292 RC0390 CLUSTER 2 VNG0218G >COG0635 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1424 TM1166 FN0560 FN0771 FN1612 DR0130 CAC1279 CAC2271 Cgl2240 Rv2388c MT2457 L0193 SPy1040 SP1409 SA1412 lin1513 BS_hemN BS_hemZ BH1152 BH1343 sll1917 all4956 yggW ZchuW ZyggW ECs3831 ECs4383 YPO0286 YPO0946 STM3104 STM4012 BU550 VC0455 VCA0909 PA0386 HI0463 PM1669 XF1507 NMB0665 NMA0864 RSc2161 HP1226 jhp1147 Cj0363c Cj0580c AGc568 SMc01147 BMEI1771 mlr4627 CC0145 RP175 RC0219 CT052 CPn0380 TP0186 BB0656 UU274 CLUSTER 2 aq_2124 sll1876 alr3126 hemN ZhemN ECs4789 YPO0021 STM4004 VC0116 PA1546 PM1833 NMB0379 NMA2108 RSc3284 HP0665 jhp0610 Cj0992c AGc2945 SMa1266 BMEI1293 BMEII0096 mll5815 mll6408 mlr6390 mlr6633 CC1411 CT746 CPn0889 >COG0638 (Putative duplication confidence score 1.000) CLUSTER 1 AF0481 AF0490 VNG0166G VNG0880G MA1779 MA3873 MTH1202 MTH686 MJ0591 MJ1237 MK0385 MK1228 Ta0612 Ta1288 TVN0304 TVN0663 PH0245 PH1402 PH1553 PAB0417 PAB1867 PAB2199 PAE0807 PAE2215 PAE3595 SSO0278 SSO0738 SSO0766 APE0507 APE0521 APE1449 YBL041w YER012w YER094c YFR050c YGL011c YGR135w YGR253c YJL001w YML092c YMR314w YOL038w YOR157c YOR362c YPR103w SPAC22D3.07 SPAC22F8.06 SPAC31A2.04c SPAC31A2.17c SPAC323.02c SPAC4A8.13c SPAC6G10.04c SPBC106.16 SPBC4C3.10c SPBC577.10 SPBC646.16 SPCC1442.06 SPCC1795.04c SPCC63.12c ECU02g0340 ECU05g0290 ECU05g1340 ECU05g1400 ECU07g1040 ECU07g1420 ECU08g0280 ECU08g1580 ECU08g1870 ECU09g0330 ECU09g0720 ECU10g0550 ECU10g1450 ECU11g1670 Rv2110c MT2170 ML1322 CLUSTER 2 Rv2109c MT2169 ML1323 >COG0645 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1964a aq_1484 DR2139 DR2467 Rv2004c_2 MT2060_2 slr0207_2 alr4787_2 PA4701_2 mll6593_2 CC0920_2 CLUSTER 2 DR0609 SMc02847 >COG0651 (Putative duplication confidence score 1.000) CLUSTER 1 AF1825 VNG0560C VNG0562C VNG0563G MA4368 MA4371 MA4569 MTH1246 MJ1309 TVN1455 TVN1458 PH0941 PH1431 PH1451 PH1452 PAB0490 PAB0806 PAB1392 PAB1402 PAB1888 PAB2416 PAE1576 SSO0328_1 SSO1021 SSO1024 APE1415 TM1105 TM1211 TM1212 DR0883 Cgl0268 Cgl2674 Rv0083 Rv0086 MT0090 MT0093 SA0581 SA0810 lin2480 BS_yufD BH1316 slr2007 slr2009 all1842 hycC hyfB hyfF ZhycC ZhyfB ZhyfF ECs3344 ECs3348 ECs3579 STM2851 VCA0155 PA1056 AGc1663 AGc899 SMa1538 SMa1541 SMc00054 SMc03181 BMEII0768 RP283 RP284 RC0381 RC0382 CLUSTER 2 RP282 RC0378 >COG0657 (Putative duplication confidence score 1.000) CLUSTER 1 AF1716 MA2629 TVN0727 SSO2493 SSO2517 SSO2521 YDR428c YGR263c SPAC1039.03 SPAC4A8.06c SPAPB1A11.02 SPBPB2B2.02 TM1160 DR0133 DR0821_2 DR1485 DRA0340 DRB0033_1 CAC2917 Cgl0119 Cgl0151 Cgl0872 Cgl1142_1 Rv0217c Rv0220 Rv1076 Rv1399c Rv1400c Rv1426c Rv2284 Rv2385 Rv2485c Rv2970c Rv3084 Rv3097c_2 Rv3487c MT0227 MT0230 MT1106 MT1443 MT1444 MT1469 MT2342 MT2453 MT2559 MT3048 MT3169 MT3181_2 MT3591 ML0314 ML1243 L141530 L42784 SPy1308 SPy1718 SA0310 SA0610 SA2140 SA2323 lin2194 BH2248 BH2806 sll0644 alr0079 aes ZybaC ECs0529 YPO2007 YPO2336 STM0490 STM4032 VCA0490 PA2098 PA5384 XF1253 XF1743 RSc0439 RSc1772 RSc3312 RSp0232 RSp1108 RSp1111 RSp1429 AGc2981 AGc4503 AGpA499 SMa0259 SMc01093 SMc01650 mll0618 mll1869 mll3568 mll4497 mll5717 mll7218 mlr0240 mlr1247 mlr5045 CC0771 CC1226 CC2298 CC2313 CC3346 TP0935 CLUSTER 2 SPAC8F11.08c >COG0663 (Putative duplication confidence score 1.000) CLUSTER 1 MA1098 MA1134 MA2536 MTH1588 MJ0304 MK0112 Ta0552 Ta0881m TVN0606 TVN0980 PH1591 PAB0393 SSO0372 aq_1660 DR2089 CAC1048 Cgl0121 Rv3525c MT3625 BS_ytoA BH0211 BH3289 sll1031_1 sll1636 all0865_1 alr1024 caiE paaY yrdA Z4650 ZcaiE ECs0038 ECs4145 STM0069 STM3399 VC0058 PA0066 PA3753 PA5540 XF1984 XF2095 NMB0625 NMA0833 RSc1133 Cj0229 AGc2798 SMc04241 BMEI0736 mll0380 mlr0180 CC2643 RP516 RC0635 CLUSTER 2 MK0772_2 >COG0674 (Putative duplication confidence score 0.727) CLUSTER 1 AF0469 AF0749_2 VNG0474G_2 VNG1128G_2 MA2910 MA3075_2 MTH1033 MTH536_2 MTH704 MJ0276 MK0728 Ta0259m_2 Ta0773_2 TVN0846_2 TVN1335_2 PH1662 PH1666 PAB0346 PAB2359 PAE0939_2 PAE1559_2 PAE2736_2 SSO2815_2 APE1473_2 APE2126_2 TM0878 TM1164_2 TM1759 CAC2459_2 Rv2455c_2 MT2530_2 SA1131_2 BH2374_2 HP0589 jhp0537 Cj0536 CLUSTER 2 AF1701 AF2053 MA0032 MTH1739 MJ0267 MK0082 Ta0628m TVN0835 PH0680 PH0684 PAB1472 PAB1475 PAE1042 PAE3275 SSO1207 SSO2129 SSO2757 YFR030w_1 YJR137c_1 SPAC10F6.01c_1 SPCC584.01c_1 aq_1167 aq_1195 TM0017 FN1170_1 FN1421_1 FN1748 FN1749 CAC2229_1 CAC2499_1 L29321_1 lin0824_1 sll0741_1 alr1911_1 alr2803_1 ydbK_1 ZydbK_1 ECs2000_1 YPO2334_1 STM1651_1 VCA0530_1 HP1110 jhp1037 Cj1476c_1 TP0939_1 >COG0675 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0013C VNG0026C VNG0042G VNG0044H VNG0286C VNG2652H VNG6181H VNG6221H VNG6361G VNG6406H MA0258 MA1009 MA1041 MA1786 MA3213 MA3361 MA3720 MA4675 MJ0013 MJ0751 MJ0752 MJ0856.1 MJ0857 MJ1635 MK0605 Ta0028 Ta0029 Ta0381 Ta0382 Ta0475 Ta0564 Ta1471 Ta1472 TVN0006 TVN0043 TVN0248 TVN0323 TVN0468 TVN0712 TVN0713 TVN0714 TVN0764 TVN0770 TVN0842 TVN0903 TVN0952 TVN1131 TVN1187 TVN1222 PH0585 PH0630 PAB1452 PAB1802 PAB2077 PAE1076 PAE1827 PAE2522 PAE2770 PAE3530 SSO0008 SSO0794 SSO0797 SSO0801 SSO0842 SSO1072 SSO1182 SSO1187 SSO1216 SSO12210 SSO1316 SSO1336 SSO1341 SSO1347 SSO1348 SSO1366 SSO1368 SSO1475 SSO1498 SSO1504 SSO1521 SSO1652 SSO1659 SSO1672 SSO1681 SSO1682 SSO1829 SSO1844 SSO1916 SSO1967 SSO1974 SSO2123 SSO2124 SSO2143 SSO2144 SSO2782 SSO2785 SSO2811 SSO2944 SSO3153 SSO3172 SSO3217 SSO3256 SSO7675 SSO7710 SSO8288 SSO9268 aq_1459 aq_716 aq_aa05 TM0047 TM0135 TM0776 TM0970 TM1003 TM1026 TM1044 TM1677 TM1831 DR0178 DR0666 DR0978 DR1381 DR1593 DR1651 DR1933 DR2324 DR2424 Rv0031 Rv0606 Rv0829 Rv0922 Rv2791c Rv2885c Rv2978c Rv3827c MT0035 MT0949 MT2861 MT2953 MT3056 MT3935 slr2062 all0314 all0315 all1608 all1684 all3986 all4465 all4675 all5207 all7008 all7085 all7148 all7158 all7245 all8010 all8068 all8070 alr1157 alr1531 alr2168 alr2719 alr3372 alr4104 alr7147 alr7153 alr7228 alr7231 alr7325 alr7329 ydcM Z3664 Z5816 ECs3276 ECs5183 PSLT035 STM2599 XF0536 XF1850 HP0413 HP0438 HP0989 HP0997 HP1095 HP1534 jhp0826 BBH40 BBI41 CLUSTER 2 MJ0012m >COG0689 (Putative duplication confidence score 1.000) CLUSTER 1 AF0493 MTH683 MK0381 Ta1293 TVN0307 PH1549 PAB0420 PAE2207 SSO0735 APE1447 YGR095c YGR195w SPAC3G9.10c SPBC115.01c SPBC211.08c ECU09g0830 ECU10g0270 aq_924 FN1851_1 DR1585 Cgl2451 Rv1340 MT1381 ML1174 lin1201 BS_rph BH3068 alr0069 rph Zrph ECs4518 YPO0044 STM3734 VC0210 PA5334 HI0273 PM1876 XF1505 NMB1499 NMA1702 RSc2159 AGc571 SMc01144 BMEI1775 mlr4622 CC0152 RP628 RC0975 CLUSTER 2 YGR158c >COG0696 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1887G MA2671 MA4007 ECU10g1060 CAC0712 SA0730 lin2550 BS_pgm BH3557 slr1945 all4182 gpmI ZyibO ECs4490 YPO0064 STM3704 VC0336 PA5131 HP0974 jhp0908 Cj0434 AGl2721 UU182 MYPU_4590 MPN628 MG430 CLUSTER 2 MA3365 >COG0698 (Putative duplication confidence score 0.800) CLUSTER 1 aq_1138 TM1080 FN1874 CAC0726 CAC2880 CAC2953 CAC2954 Cgl2369 Rv2465c MT2540 ML1484 SPy1707 SPy1708 SPy1922 SPy1923 SP1192 SP1193 SA1996 SA1997 lin0363 lin0498 lin2811 lin2821 BS_ywlF BH3767 ssl2153 rpiB YPO3353 PM1645 HP0574 jhp0521 Cj0925 SMb20371 SMc01613 BMEII0424 msr7277 RP299 RC0402 UU006 MYPU_6120 MPN595 MG396 CLUSTER 2 CAC2606 SPy0637 SP0319 YPO1991 STM1933 >COG0715 (Putative duplication confidence score 1.000) CLUSTER 1 AF0088 MA0065 MJ1181 MK0601 YDL244w YFL058w YJR156c YNL332w SPCC1223.02 TM0202 TM0484 FN0236 DR0268 DR1277 DR1655 CAC0106 CAC0620 CAC1400 Cgl1195 Cgl1246 Cgl1257 SP2197 SA0167 BS_ssuA BS_ytlA BS_ytlB BH1209 BH2682 sll0473 sll1080 sll1450 sll1452_2 slr0040 slr0043_2 all3333 alr0608 alr0610_2 alr2877 alr2879_2 ssuA ZycbO ECs1019 YPMT1.42 YPO2286 YPO3624 VC1369 PA0186 PA1786 PA2296 PA2309 PA2328 PA2594 PA2595 PA2596 PA2599 PA3445 PA3449 PA3513 HI0357 PM1263 RSc0381 RSc1198 RSc1338 RSc3391 RSp1383 RSp1509 AGc1281 AGc1930 AGc256 AGc3458 AGc4336 AGl1197 AGl129GM AGl1399 AGl1881gl AGl1886 AGl2760 AGl2788 AGl3061 AGl928 AGpT119 AGpT163 SMa0585 SMa2087 SMa2093 SMb20570 SMb21114 SMc01827 SMc02344 BMEI1737 BMEII0109 BMEII0797 BMEII0963 mll1256 mll1296 mll1621 mll1755 mll4559 mll6979 mll8573 mll9181 mlr2856 mlr2858 mlr6799 mlr7112 mlr7949 CC0609 CC1833 CC2633 CT854_2 CPn1012_2 CLUSTER 2 AF0640 >COG0733 (Putative duplication confidence score 1.000) CLUSTER 1 AF1995 VNG1526G VNG1528G VNG6261G MA0901 MA1518 MJ1319 PH1372 PAB1850 aq_2077 FN1944 FN1989 Cgl1001 SP0737 SA0417 lin1873 BS_yhdH BS_yocR BH0217 BH1128 BH3439 VC1669 VC2012 VC2283 HI0736 HI1690 PM0380 PM0718 NMB1707 NMB1975 NMA0470 NMA1961 HP0497 HP0498 jhp0449 jhp0450 Cj0601c Cj0934c Cj0935c CT231 CPn0290 TP0023 CLUSTER 2 SP0738 >COG0744 (Putative duplication confidence score 1.000) CLUSTER 1 TM0886 FN0525 DR0479 DR1417 CAC2301 CAP0076 Cgl0279 Cgl2930 Rv0050 Rv3682 MT0056 MT3784 ML2308 ML2688 L129183 L160485 L191431 SPy0097 SPy1649 SPy2059 SP0369 SP2010 SP2099 SA1283 SA1551 SA1691 lin2006 lin2331 BS_pbpD BS_pbpF BS_ponA BS_ywhE BH1201 BH1702 BH3229 BH3812 sll0002_2 sll1434 slr1710 all2952 all2981 alr4579 alr5324 alr5326 mrcB mtgA ZmrcB ZmtgA ECs0153 ECs4087 YPO3393 YPO3552 STM0190 STM2439 STM3326 BU200 VC0602 PA0378 PA4700 HI0831 HI1725 PM0324 PM0456 XF0884 XF1715 NMB0357 NMA2130 RSc2776 HP0597 jhp0544 Cj0508 AGc158 AGc1696 AGc4930 SMa1905 SMc00122 SMc02856 SMc03883 BMEI0271 BMEI1351 BMEI1831 mll3238 mll3783 mll7657 CC0252 CC0325 CC1516 CC3277 CLUSTER 2 VC1321 PA0788 RSc1476 >COG0753 (Putative duplication confidence score 1.000) CLUSTER 1 YDR256c YGR088w SPCC757.07c DR1998 DRA0259 Cgl0256 SA1170 lin2920 BS_katA BS_katB BS_katX BH1306 BH1980 katE ZkatE ECs2438 YPO1207 STM1318 VC1585 PA2147 PA4236 PA4613 HI0928 PM0032 NMB0216 NMA0050 RSp1581 HP0875 jhp0809 Cj1385 AGpA722 SMb20007 SMc00819 BMEII0893 mlr2101 CLUSTER 2 HP0485 jhp0437 >COG0754 (Putative duplication confidence score 1.000) CLUSTER 1 sll0023 ygiC yjfC ZygiC ZyjfC ECs3926 ECs5162 YPO0660 STM3188 STM4376 HI0929 HP0233 jhp0218 Cj0372 AGc3820 AGc3823 CC2361 CLUSTER 2 gsp_2 Zgsp_2 ECs3873_2 STM3139_2 >COG0764 (Putative duplication confidence score 1.000) CLUSTER 1 aq_056 TM0801 FN0594 DR1074 CAC3571 L0188 L160425 SPy1746 SP0424 SA1901 lin2668 BS_ycsD BS_ywpB BH1850 BH3735 sll1605 alr2271 fabZ Z1546 Z4857 ZfabZ ECs0182 ECs1286 ECs4332 YPO1055 YPO1454 STM0227 BU237_2 VC2249 PA3645 HI1062 PM1995 XF0774 XF1044 NMB0179 NMA0088 RSc0432_2 RSc1415 RSp0367_2 HP1376 jhp1290 Cj0273 AGc2558 AGc2940 SMc02092 SMc04277 BMEI0832 mll0634 CC1912 RP008 RC0009 CT532 CPn0651 CLUSTER 2 all1643_2 fabA ZfabA ECs1038 YPO1430 STM1067 VC1483 PA1610 HI1325 PM0484 XF0572 AGc246 SMc00328 BMEI1956 mll5569 CC3720 >COG0767 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1530 aq_355 Rv0167 Rv0587 Rv1964 Rv3501c MT0176 MT0616 MT2016 MT3605 ML2587 slr1045 slr1344 alr4015 yrbE ZyrbE ECs4073 YPO3574 STM3312 VC2519 PA3211 PA4455 HI1086 PM0175 XF0420 XF1303 NMB1965 NMA0486 RSc0313 RSc2961 HP1466 jhp1359 Cj1646 AGc3035 SMc00174 BMEI0965 mll0801 CC2318 CC3695 RP096 RC0129 CLUSTER 2 Rv0168 Rv0588 Rv1965 Rv3500c MT0617 MT2017 MT3604 ML2588 >COG0769 (Putative duplication confidence score 1.000) CLUSTER 1 MTH734 MK0752 aq_1747 TM0237 FN1225 DR0297 CAC2129 CAC2819 Cgl2113 Rv2158c MT2217 ML0909 L53929 SPy0388 SP1530 SA0876 lin2144 BS_murE BH2571 slr0528 slr2002_2 all1663 all3879_2 murE ZmurE ECs0089 YPO0550 STM0123 BU221 VC2406 PA4417 HI1133 PM0137 XF0793 NMB0414 NMA2071 RSc2849 HP1494 jhp1387 Cj1641 AGc3809 SMc01861 BMEI0574 mll1560 CC2559 RP597 RC0912 CT269 CPn0418 TP0933 BB0201 CLUSTER 2 MK0926 CAC0962 Cgl0247 Rv3712 MT3815 ML2326 L114717 SPy1035 SP1589 SA1708 slr0938 alr2717 >COG0772 (Putative duplication confidence score 1.000) CLUSTER 1 aq_025 aq_1139 TM0233 TM0839 FN0042 FN1027 DR2497 CAC0505 CAC1251 CAC2126 Cgl0044 Cgl2109 Rv0017c Rv2154c MT0020 MT2213 ML0019 ML0913 L107499 L115706 L62179 SPy0609 SP0803 SP1067 SA0962 SA1888 lin0441 lin1059 lin2521 lin2522 lin2834 lin2835 BS_spoVE BS_ylaO BS_ywcF BH2566 BH3275 BH3276 BH3360 slr1267 all0154 alr0653 ftsW mrdB ZftsW ZmrdB ECs0093 ECs0672 YPO0554 YPO2603 STM0127 STM0639 BU217 VC0949 VC2402 PA4002 PA4413 HI0031 HI1137 PM0141 PM1925 XF0796 XF1313 NMB0421 NMA2063 RSc0063 RSc2845 HP0743 HP1560 jhp0680 jhp1468 Cj1038 Cj1282 AGc3801 SMc01865 BMEI0578 mll1555 CC1547 CC2552 RP280 RP411 RC0376 RC0561 CT726 CT760 CPn0867 CPn0903 TP0387 TP0501 BB0302 BB0719 CLUSTER 2 CC3235 >COG0773 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1360 TM0231 FN1456 DR0627 CAC3225 Cgl2107 Rv2152c MT2211 ML0915 L101678 SPy0345 SP1521 SA1561 lin1646 BS_murC BH3248 slr1423 alr5065 murC ZmurC ECs0095 YPO0556 STM0129 BU215 VC2400 PA4411 HI1139 PM0143 XF0798 NMB0423 NMA2061 RSc2843 HP0623 jhp0567 Cj1054c AGc3796 SMc01867 BMEI0580 mll1553 CC2546 RP247 RC0331 CT762_1 CPn0905_1 TP0341 BB0817 CLUSTER 2 mpl ZyjfG ECs5210 YPO3519 STM4416 VC2542 PA4020 HI0121 PM0929 XF0276 NMB1145 NMB1183 NMA1356 RSc2782 >COG0775 (Putative duplication confidence score 0.867) CLUSTER 1 MA3492 MA3560_2 TM1129 FN1015 DR1451 DR1664 CAC2117 Cgl2742 Rv0091 Rv2293c MT0100 MT2350 L132777 SPy0447 SP0991 SA1427 lin1529 BS_yrrU BH1279 BH2690 BH3238 pfs Zpfs ECs0163 YPO3384 STM0207 BU210 VC2379 HI1216 PM0194 NMB0767 NMA0978 RSc3374 HP0089 jhp0082 Cj0117 AGc482 SMc00395 BMEII0888 mlr6947 CC2266 CPn0232 TP0170 BB0375 BB0588 BBE07 BBI06 UU470 MYPU_3360 CLUSTER 2 Cgl0095 amn Zamn ECs2779 YPO2288 STM2009 PA3970 RSp0214 AGc1849 SMc02386 BMEI1318 mll7714 CC0264 CT751 CPn0894 >COG0777 (Putative duplication confidence score 1.000) CLUSTER 1 aq_445 FN0408 DR1215 CAC3569 Cgl0808_1 Rv0904c_1 MT0927_1 L0180 SPy1744 SP0426 SA1523 lin1608 BS_yttI BH3166 sll0336 all2364 accD ZaccD ECs3200 YPO2768 STM2366 VC1000 PA3112 HI1260 PM0636 XF1467 NMB0679 NMA0880 RSc1980 HP0950 jhp0884 Cj0127c AGc32 SMc02764 BMEI2020 mlr5075 CC3542 CT293 CPn0058 CLUSTER 2 PA0211 >COG0782 (Putative duplication confidence score 1.000) CLUSTER 1 TM1706 DR1162 DR1970 DR2375 CAC1965 CAC2430 CAC3198 Cgl0961 Rv1080c Rv3788 MT1111 MT3896 ML2393 L0140 SPy0349 SP1517 SA1438 lin1531 BS_greA BH1276 greA greBm rnk ZgreA ZgreB Zrnk ECs0649 ECs4060 ECs4248 YPO0135 YPO3505 YPO3695 STM0616 STM3299 STM3503 BU384 VC0634 VC2715 VCA0607 PA2859 PA4755 PA5274 HI0569 HI1331 PM0715 PM1450 XF1108 NMB0689 NMB1430 NMA0891 NMA1643 RSc1522 RSc2152 RSc2636 HP0866 jhp0800 Cj0287c AGc3965 AGl2534 SMa0149 SMa0229 SMa0232 SMc00347 SMc01218 BMEI0508 BMEI1377 BMEII0657 mll2568 mll3994 mlr7618 CC2202 CC2848 RP861 RC1332 CT636_2 CPn0741_2 TP0019 BB0132_2 UU304 MYPU_5530 MPN401 MG282 CLUSTER 2 mll3993 >COG0786 (Putative duplication confidence score 0.500) CLUSTER 1 FN0205 FN0793 FN1801 SA2135 slr1145 gltS ZgltS ECs4529 YPO0035 STM3746 VCA0041 PA3176 HI1530 NMB0085 NMA0183 HP1506 jhp1399 CLUSTER 2 Cgl2722 slr0625 >COG0804 (Putative duplication confidence score 0.500) CLUSTER 1 SPAC1952.11c_3 DRA0318 Cgl0086 Rv1850 MT1898 SA2084 BS_ureC BH0254 sll1750 alr3670 ZureC ZureC.2 ECs1324 PA4868 HI0539 RSc2032 HP0072 jhp0067 AGc4357 SMc01837 BMEI1652 mll4940 UU432 CLUSTER 2 YPO2667 BMEI0647 >COG0811 (Putative duplication confidence score 0.500) CLUSTER 1 MA0344 MA4426 MA4641 MTH671 MK0066 PA1924 CLUSTER 2 MTH1022 aq_1757 aq_1988 FN1312 FN1834 DR0456 sll0477 sll1404 slr0677 all5047 alr0643 alr4587 exbB tolQ ZexbB ZtolQ ECs0772 ECs3890 YPO0682 YPO1121 STM0745 STM3159 VC1546 VC1547_2 VC1839 VCA0911 PA0198 PA0693_2 PA0969 PA2983 HI0253 HI0385 PM0970 PM1186 XF0010 XF1079 XF1900 NMB1729 NMA1984 RSc0732 RSc1964 RSc2528 HP1130 HP1339 HP1445 jhp1058 jhp1258 jhp1338 Cj0109 Cj0179 Cj1628 AGc264 AGl2236 SMc02085 SMc03958 BMEI0336 BMEI0365 mll3891 mll4168 CC2336 CC3233 RP309 RC0422 CT596 CPn0785 >COG0814 (Putative duplication confidence score 0.727) CLUSTER 1 YBL089w YEL064c YER119c YIL088c YJR001w YKL146w YNL101w SPAC3H1.09c SPBC1685.07c ECU04g1190 ECU05g0160 ECU05g0580 ECU09g1190 ECU11g1740 Cgl0474 mtr tnaB tyrP Zmtr ZtnaB ZtyrP ECs2615 ECs4042 ECs4646 YPO1209 YPO1285 STM1937 STM3279 VCA0160 VCA0772 PA1916 PA3766 PA5434 HI0287 HI0477 HI0528 PM0732 PM0810 PM1192 PM1419 NMB2031 NMA0409 CT817 CT818 CPn0969 CPn0970 CLUSTER 2 sdaC tdcC yhaO yhjV yqeG Z4165 ZsdaC ZtdcC ZyhaO ZyhjV ECs3656 ECs3702 ECs3991 ECs3996 ECs4419 YPO0277 YPO1321 STM2970 STM3022 STM3239 STM3243 STM3625 VC1301 VC1658 HI0289 PM0037 HP0133 jhp0121 Cj1625c >COG0820 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1528 aq_416 TM1715 FN0526 DR0936 CAC1726 Cgl1973 Rv2879c Rv2880c MT2947 L184159 SPy1533 SP0768 SA1061 lin0484 BS_yloN BH2506 sll0098 all0355 yfgB ZyfgB ECs3379 YPO2882 STM2525 BU286 VC0757 PA1839 PA3806 HI0365 PM2007 XF0459 NMB1308 NMA1522 RSc1212 HP1428 jhp1325 Cj1713 AGc4846 SMc03831 BMEI1867 mlr4359 CC0134 TP0068 UU214 CLUSTER 2 TM0136 CAC1190 >COG0826 (Putative duplication confidence score 1.000) CLUSTER 1 MA0538 MA1709 MA4661 MTH1763 MTH645 MJ0090 MJ1657 MK0019 MK0904 MK0906 SSO1759 SSO2015 aq_1015 FN1826 FN1931 DR2130 CAC1687 CAC2341 CAC2974 L52207 L54059 SPy0590 SPy0591 SP0801 SP1427 SP1429 SA1440 SA1441 lin0959 lin0960 BS_yrrN BS_yrrO BH1273 BH1274 all1741 ydcP yegQ yhbU ZydcP ZyegQ ZyhbU ECs2039 ECs2889 ECs4039 YPO2855 YPO3479 STM1604 STM2136 STM3274 VC0652 VC0717 PA3913 PA5440 HI0419 PM0233 NMB1664 NMA1923 RSp0970 HP0169 jhp0155 Cj0701 AGl935 SMa1291 BMEII0959 CLUSTER 2 yhbV ZyhbV ECs4040 YPO3480 STM3275 VC0651 PA3912 RSp0969 AGl934 SMa1292 BMEII0960 >COG0833 (Putative duplication confidence score 1.000) CLUSTER 1 YBR068c YBR069c YBR132c YCL025c YDR046c YDR508c YEL063c YFL055w YGR191w YKR039w YLL061w YNL268w YNL270c YOL020w YOR348c YPL265w YPL274w SPAC1039.09 SPAC869.10c SPAC869.11 SPAP7G5.06 SPBC1652.02 SPBC19F8.06c SPBC359.01 SPBC359.03c SPBPB2B2.01 SPCC777.04 SPCC965.11c SPCPB1C11.02 CAC3164 CAC3347 L169610 L59950 SA1169 SA1505 lin0791 BS_hutM BS_rocC BS_rocE BS_ybgF lysP ykfD ZlysP ECs3048 YPO1309 STM2200 STM2357 PA4628 PA4981 RSc1757 RSc1758 HP1017 jhp0406 CLUSTER 2 YDR160w >COG0836 (Putative duplication confidence score 1.000) CLUSTER 1 AF1097_1 VNG2159Gm MA3781_1 PH0925_1 PAB0818_1 aq_589_1 TM1033 DRA0032 CAC2968 CAC3058 CAC3072 sll1370 alr0188 cpsB_1 ZcpsB_1 ZmanC_1 ECs2836_1 ECs2854_1 YPO3099_1 STM2084_1 STM2105_1 VC0241_1 PA2232_1 PA3551_1 PA5452_1 XF0259_1 HP0043_1 jhp0037_1 AGl2939_1 SMb21082_1 BMEI1395_1 BMEII0900_1 mlr5802_1 mlr7607_1 CC3618 RC1039_2 CLUSTER 2 RC1040 >COG0841 (Putative duplication confidence score 1.000) CLUSTER 1 MA0141 aq_786 TM0372 FN0474 FN0515 FN1275 DR0740 CAC0370 SA2056 BS_yerP BH3816 sll0142 slr0369 slr0454 slr2131 all3143 alr1656 alr4267 alr5294 acrB acrD acrF yegN yegO yhiV Z2507 Z2508 ZacrB ZacrD ZacrF.1 ZacrF.2 ZyegN ZyegO ZyhiV ECs0515 ECs1864 ECs2883 ECs2884 ECs3332 ECs4138 ECs4139 ECs4394 YPO0421 YPO1001 YPO2848 YPO2849 YPO3043 YPO3133 YPO3482 STM0351 STM0475 STM2127 STM2128 STM2481 STM3391 VC0164 VC0629 VC0914 VC1673 VC1757 PA0158 PA0426 PA1436 PA2018 PA2494 PA2526 PA2527 PA3522 PA3676 PA4207 PA4375 PA4598 HI0895 PM1132 XF0243 XF2083 XF2094 XF2385 XF2386 NMB1715 NMA1969 RSc0010 RSc1654 RSc3205 RSp0312 RSp0670_2 RSp0818 RSp1113 RSp1198 RSp1199 RSp1458 RSp1597 HP0607 jhp0554 Cj0366c Cj1033 AGc3721 AGc4340 AGc4508 AGc4621 AGl1281 AGl2075 AGl3088 AGl3217 AGl494 AGpA548 SMa0875 SMa1662 SMa1884 SMb20345 SMb21498 SMc01095 SMc01457 SMc01829 SMc02867 SMc03971 BMEI0893 BMEI1629 BMEI1645 BMEII0382 BMEII0473 BMEII0915 BMEII0916 mll1426 mll3832 mll5518 mll5779 mll6730 mll7357 mlr2404 mlr3285 mlr3649 mlr7298 CC0807 CC1204 CC1788 CC3120 CC3197 RP170 RC0211 RC0564 RC0565 RC0566 RC0567 RC0568 RC0569 BB0140 CLUSTER 2 aq_695 VCA0638 >COG0843 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0657G PAE1337_1 SSO2973_1 APE0793_1 Q0045 Q0065 Q0070 aq_2191 DR2620_1 Cgl2472 Rv3043c MT3128 ML1728 SA0912 lin0014 BS_ctaD BS_qoxB BH2065 BH2614 slr1137 slr2082 alr0951 alr2515 alr2732 cyoB ZcyoB ECs0485 YPO3165 STM0442 BU471 PA0106 PA1318 XF1389 RSc0363 RSc1859 RSc2916 RSp1565 AGc1399 AGc227 SMb21370 SMb21488 SMc00010 SMc01983 BMEI1465 BMEI1900 mll9630 mlr1041 mlr6847 mlr7491 CC1772 CC3406 RP405 RC0553 CLUSTER 2 VNG2193Gm PAE1357 SSO0044 SSO2657 APE1623 aq_2192 BH0739 >COG0849 (Putative duplication confidence score 1.000) CLUSTER 1 MK0451 aq_523 TM0835 FN1452 DR0630 CAC1692 L0207 SPy1521 SP1667 SA1028 lin2139 BS_ftsA BH2559 ftsA ZftsA ECs0098 YPO0559 STM0132 BU213 VC2398 PA4408 HI1142 PM0146 XF0801 NMB0426 NMA2058 RSc2840 HP0978 jhp0912 Cj0695 AGc3785 SMc01873 BMEI0584 mll1549 CC2541 RP251 RC0335 TP0389 BB0300 CLUSTER 2 TM1277 CAC1013 BH3243 >COG0861 (Putative duplication confidence score 0.588) CLUSTER 1 DR1187 DRB0131 CAC1039 CAC1415 SA0878 lin0990 lin0991 BS_yceF BS_yjbE BS_ykoY BH2553 BH2860 sll1022 all3403 yegH_1 ygdQ yoaE_1 Z4150 ZyegH_1 ZyoaE_1 ECs2525_1 ECs2868_1 ECs3689 YPO1527_1 YPO1759_1 STM1828_1 STM2119_1 STM3006 BU323_1 PA1170 PA1331_1 PA5250 PA5469 HI0056 PM1066 NMB1485_1 NMA1694_1 RSc0556 RSc0949 RSp1172_1 HP1343 jhp1262 Cj0186c AGc3584 AGl1024_1 AGl786 SMc03171 SMc04175 BMEI0317 BMEI0671_1 mll3952 mlr0496 CC0347 CC1237 CLUSTER 2 Cgl1921 Rv2723 MT2795 ygjT ZterC ZterC.2 ZygjT ECs1354 ECs3970 YPO0297 STM3224 VCA0546 PA2549 XF0406 NMB0012 NMA0259 AGc3415 CC3682 RP786 RC1219 >COG1001 (Putative duplication confidence score 1.000) CLUSTER 1 AF0240 MA2310 MTH866 MJ1459 MK0829 DRA0270 CAC0887 lin1853 BS_adeC BH0640 yicP ZyicP ECs4602 AGc4165 AGl883 SMa1715 SMa1718 SMb21278 SMc01533 BMEII0627 mlr0157 BBH33 BBK17 CLUSTER 2 BS_yerA BH0637 >COG1009 (Putative duplication confidence score 1.000) CLUSTER 1 AF1826 VNG0646G MA1504 MA4572_1 Ta0961 TVN1106 PAB1391 PAE1568 SSO0328_2 APE1411 aq_1320 aq_1379 aq_866 DR0880_1 DR1494 Cgl0270_1 Cgl2672_1 Rv3156 MT3244 SA0411 SA0578_1 SA0813_1 lin2477_1 BS_ndhF BS_shaA_1 BH1319_1 sll0026 sll1732 slr0844 alr0869 alr3956 alr4156 hyfD nuoL ZhyfD ZnuoL ECs3162 ECs3346 YPO2545 STM2318 BU164 VC1581 VCA0157_1 PA1054_1 PA2647 XF0316 NMB0257 NMA0002 RSc2051 HP1271 jhp1192 Cj1568c AGc1658_1 AGc2360 AGc903_1 SMc00051_1 SMc01925 SMc03179_1 BMEI1147 BMEII0770_1 mll1355 CC1939 RP792 RC1226 CLUSTER 2 TVN1107 >COG1012 (Putative duplication confidence score 0.923) CLUSTER 1 VNG0771G VNG0808G VNG0937G VNG2513G MA0705 MA1355 MA2860 MA4079 MTH978 MJ1411 MK1108 Ta0220 Ta0439 Ta0603 Ta0809 TVN0397 TVN0653 TVN1021 TVN1054 TVN1283 TVN1374 PAE2480 SSO1218 SSO1629 SSO1842 SSO3117 SSO3194 APE0163 APE0807 APE1786 YBR006w YER073w YHR037w YHR039c YMR110c YMR169c YMR170c YOR374w YPL061w SPAC1002.12c SPAC139.05 SPAC922.07c SPAC9E9.09c SPBC21C3.15c SPBC24C6.04 SPCC550.10 aq_186 FN0454 DR0813 DR2381_1 DRA0003 DRA0030 DRA0126 DRA0220 DRA0343 DRA0348 CAC3657 Cgl0050 Cgl0099_2 Cgl0160 Cgl0447 Cgl0473 Cgl0530 Cgl0532 Cgl2416 Cgl2615 Cgl2656 Cgl2736 Rv0147 Rv0223c Rv0234c Rv0458 Rv0753c Rv0768 Rv1187 Rv1731 Rv2858c Rv3293 MT0155 MT0233 MT0245 MT0474 MT0777 MT0792 MT1224 MT1772 MT2926 MT3392 ML2573 ML2639 SPy1067 SPy1371 SP1119 SA0162 SA1736 SA1924 SA2341 SA2406 lin0401 lin0913 BS_aldX BS_aldY BS_dhaS BS_gbsA BS_iolA BS_rocA BS_ycbD BS_ycgN BS_ycnH BS_yfmT BS_ywdH BH0203 BH0539 BH0681 BH0865 BH0995 BH1005 BH1738 BH2010 BH2237 BH2312 BH2737 BH3316 BH3940 sll1561_2 slr0091 slr0370 all3556 all5022 alr0540_2 alr3672 alr3771 aldA aldB aldH astD betB feaB gabD maoC_1 ydcW yneI Z2275 Z2778 ZaldA ZaldB ZaldH ZbetB ZgabD ZyneI ECs0358 ECs1877 ECs2021 ECs2048 ECs2132 ECs2452 ECs3522 ECs4464 YPO1166 YPO1290 YPO1763 YPO1964 YPO2577 STM1102 STM1305 STM1524 STM1597 STM2791 STM3129 STM3680 STM4421 STM4519 VC0819 VC1745 VC1819 VC2616 VCA1067 PA0130 PA0219 PA0265 PA0366 PA0747 PA0898 PA1027 PA1253 PA1984 PA2125 PA2217 PA2323 PA3504 PA3570 PA4022 PA4073 PA4123 PA4189 PA4899 PA5312 PA5373 PM1530 PM1536 NMB1353 NMB1488 NMB1968 NMA0480 NMA1565 NMA1696 RSc0028 RSc0161 RSc1456 RSc2110 RSc2350 RSc2536 RSc3128 RSp0226 RSp0229 RSp0650 RSp0827 RSp0890 RSp1055 RSp1591 RSp1611 HP0056_2 jhp0048_2 Cj0489 Cj0490 Cj1503c_2 AGc1515 AGc351 AGc3880 AGc4041 AGl1010GM AGl1228 AGl1241 AGl1402 AGl1790 AGl1806 AGl241 AGl2660 AGl2838 AGl2842 AGl3116 AGl75 AGpA197 AGpA283 AGpA320 SMa0050 SMa0052 SMa0220 SMa0260 SMa0796 SMa0805 SMa1415 SMa1731 SMa1844 SMa1848 SMa2213 SMb20262 SMb20378 SMb20424 SMb20891 SMb21185 SMb21301 SMb21539 SMb21635_1 SMc00094 SMc00781 SMc01588 SMc01656 SMc01971 SMc02689 SMc02780 SMc04385 SMc04397 BMEI0024 BMEI0219 BMEI0386 BMEI1382 BMEI1559 BMEI1560 BMEI1740 BMEI1747 BMEII0124 BMEII0125 BMEII0135 BMEII0140 BMEII0141 BMEII0142 BMEII0225 BMEII0241 BMEII0242 BMEII0282 BMEII0388 BMEII0608 BMEII0869 mll1015 mll1168 mll2219 mll2319 mll2867 mll3072 mll3987 mll4783 mll5719 mll5809 mll6142 mll6153 mll6639 mll7043 mll7045 mll7128 mll7197 mll7608 mlr3049 mlr4051 mlr4198 mlr5236 mlr5385 mlr6098 mlr6969 msl6152 msl8688 CC0419 CC0582 CC0822 CC1216 CC1302 CC1607 CC1849 CC2274 CC2397 CC2402 CC2791 CC3140 CC3141 CC3580 RC0621 UU362 CLUSTER 2 FN0084 CAP0035_1 CAP0162_1 L13145_1 SP2026_1 SA0143_1 lin1129 lin1143 lin1675_1 adhE_1 eutE ZadhE_1 ZeutE ECs1741_1 ECs3317 YPO2180_1 STM1749_1 STM2051 STM2463 VC2033_1 PM1453_1 >COG1015 (Putative duplication confidence score 1.000) CLUSTER 1 TM0167 DR2135 CAC2065 L154925 SPy0890 SP0829 SA0134 lin2068 BS_drm BH1530 deoB ZdeoB ECs5342 YPO0439 STM4569 BU542 VC2348 HP1179 jhp1105 AGc219 SMc04119 mll5587 MYPU_2770 CLUSTER 2 BH0592 yhfW >COG1018 (Putative duplication confidence score 0.812) CLUSTER 1 VNG0475C YGR234w_2 SPAC869.02c_2 FN0100 DRA0243_2 Cgl2333 Cgl2778_2 Rv2776c Rv3230c Rv3554_2 Rv3571 MT2846 MT3327 MT3658_2 MT3676 SA0231_2 BS_hmp_2 BH1058_2 hmp_2 paaE ybjV yeaX Z1106 ZhmpA_2 ZyeaX ECs0958 ECs2512 ECs3418_2 YPO1359 YPO2492 YPO2908_2 STM0936 STM2556_2 VCA0183_2 VCA0924_2 PA2664_2 PA3498 PA4889 PA4905 PA5411 XF0053_2 RSc3398_2 RSp0063 RSp0223 RSp0608 AGc1321 SMa0752 SMa1191_2 SMa1500_2 SMa1735 SMa2117_2 SMb21636 SMc00981 SMc04151 BMEI0548 mll5100 mll6619_2 mlr7322 CC2394 CLUSTER 2 fpr Zfpr ECs4849 YPO0088 STM4084 BU581 PA3397 PA4615 XF1889 NMB1044 NMB1450 NMA1442 NMA1664 RSc1305 AGc2692 SMc02122 BMEI1591 mll4785 CC3208 >COG1024 (Putative duplication confidence score 1.000) CLUSTER 1 AF0017_2 AF0285_2 AF0435 AF0685 AF0963 AF1122_2 AF1641 AF2273_2 AF2429 VNG0428G VNG1313G_2 VNG2032Gm Ta0061 Ta0121 Ta0291_2 Ta0440 Ta1232 TVN0017 TVN0198 TVN0363 TVN0915 TVN1310_2 PAE1383_2 PAE1650 PAE2479 SSO0050 SSO0654 SSO1311 SSO2017 SSO2514_2 SSO2535 SSO2623 SSO2624 APE0056 APE0591 APE1484_2 YDR036c_1 YLR284c YOR180c SPBC2D10.09 aq_1156_2 FN0271 FN1020 DR0114 DR0184 DR1151 DR1487_1 DR2477_2 DR2510 CAC2012 CAC2016 CAC2712 Cgl0895 Rv0222 Rv0456c Rv0632c Rv0673 Rv0675 Rv0860_1 Rv0905 Rv0971c Rv1070c Rv1071c Rv1136 Rv1141c Rv1142c Rv1472 Rv1935c Rv2486 Rv2679 Rv2831 Rv3039c Rv3373 Rv3374 Rv3516 Rv3550 Rv3774 MT0232 MT0472 MT0660 MT0702 MT0704 MT0883_1 MT0928 MT0999.1 MT1100 MT1101 MT1169.1 MT1174 MT1175 MT1518 MT1985 MT2560 MT2753 MT2897 MT3124 MT3617 MT3654 MT3883 ML0120 ML1241 ML1724 ML2118 ML2161_1 ML2401 ML2402 ML2498 SPy1758 SP0415 SA0224_2 BS_pksH BS_pksI BS_yhaR BS_yngF BS_ysiB BS_yusL_2 BH0201 BH0202 BH0207 BH1135 BH1849 BH1996 BH2582 BH3101 BH3488_2 BH3824 alr4455 caiD fadB_1 paaG ydbS yfcX_1 ygfG Z3604_1 ZcaiD ZfadB_1 ZygfG ECs0039 ECs3224_1 ECs3789 ECs4774_1 YPO1458 YPO1459 YPO2747_1 YPO3766_1 STM0070 STM2388_1 STM3983_1 VC1047_1 VC2758_1 PA0744 PA0745 PA1021 PA1240 PA1629 PA1737_1 PA1748 PA1821 PA2013 PA2767 PA2841 PA2890 PA3014_1 PA3426 PA3591 PA4330 PA4980 XF1115 RSc0267 RSc0304 RSc0474_2 RSc0476 RSc1298 RSc1759_1 RSc2014 RSc2872 RSc2873 RSp0035 RSp0225 RSp0647 RSp0648 RSp0671 AGc1329 AGc2617 AGc562 AGc888_1 AGl2647 AGl2700 SMa1408 SMb20752 SMb21126 SMb21633 SMc00976 SMc01153 SMc01641 SMc01669 SMc01806 SMc02227_1 SMc04398 BMEI0022 BMEI0023 BMEI1196 BMEI1522 BMEI1927 BMEI1945 BMEII0214 BMEII0497_1 BMEII1021 mll1009 mll4199_1 mll5431 mll5584 mll6015 mll6870 mll8753 mlr1841 mlr3048 mlr5044 mlr5629_1 mlr5639 mlr6976 mlr7453 mlr8134 mlr8392 mlr8461 CC0006 CC0076_1 CC0353 CC0397 CC0947 CC1352 CC1723 CC1813_1 CC1814 CC1851 CC2169 CC2401 CC2575 CC3084 CC3189_1 RP560_2 RC0836 RC0837 RC0838 CLUSTER 2 BMEI1928 >COG1026 (Putative duplication confidence score 1.000) CLUSTER 1 YDR430c SPBC119.17 DR0617 CAC1654 CAC3006 CT824 CPn0981 TP0025 BB0228 CLUSTER 2 YOL098c SPAC3H1.02c >COG1028 (Putative duplication confidence score 1.000) CLUSTER 1 AF1207 VNG0364G VNG0479G VNG1341G VNG1540G VNG1748C VNG2158G VNG2632G MA0107 MA0415 MA0479 MA1321 MA2686 MA2687 Ta0191 Ta0205 Ta0251 Ta0441 Ta0481_2 Ta0672 Ta0747 Ta0754 Ta0822 Ta0913 TVN0075 TVN0448_2 TVN0711 TVN1059 TVN1344 TVN1406 PH1809 PH1901 PAB0245 PAB1085 PAB2177 PAE0025 PAE0797 PAE1589 PAE2089 PAE2832 SSO0975 SSO1542 SSO2205 SSO2276 SSO2289 SSO2500 SSO2664 SSO3004 SSO3114 APE0912 APE1361 APE2503 YBR265w YDL114w YIL124w YIR035c YIR036c YKL055c YKL071w YKL107w YKR009c_1 YLR100w YLR426w YNL181w YNL202w YOR246c YPL033c SPAC1348.09 SPAC19A8.06 SPAC22A12.17c SPAC23D3.11 SPAC3G9.02 SPAC4H3.08 SPAC8E11.10 SPAC922.06 SPAC977.08 SPBC16H5.14c SPBC1709.07 SPBC30D10.05c SPCC1450.15_1 SPCC162.03 SPCC1739.08c SPCC24B10.20 SPCC663.06c SPCC663.08c SPCC663.09c SPCC736.13 ECU10g0560 ECU11g1070 aq_1010 aq_1240 aq_1716 TM0019 TM0297 TM0325 TM0441 TM1169 TM1724 FN0216 FN0494 FN1687 DR0088 DR0113 DR0411 DR0730 DR0822 DR1467 DR1620 DR1700_2 DR1938 DR1943 DR2595 DRA0195 DRA0200 DRA0364 DRB0036 DRB0080 CAC0361 CAC1331 CAC1423 CAC1576 CAC2607 CAC2626 CAC3335 CAC3462 CAC3484 CAC3574 Cgl0190 Cgl0286 Cgl0321 Cgl0536 Cgl0699 Cgl1008 Cgl1009 Cgl1450 Cgl2083 Cgl2355 Cgl2390 Cgl2619 Cgl2992 Rv0068 Rv0148 Rv0242c Rv0303 Rv0439c Rv0547c Rv0687 Rv0765c Rv0769 Rv0851c Rv0927c Rv0945 Rv1050 Rv1144 Rv1245c Rv1350 Rv1483 Rv1543 Rv1714 Rv1856c Rv1865c Rv1882c Rv1928c Rv1941 Rv2002 Rv2073c Rv2129c Rv2214c_2 Rv2263 Rv2750 Rv2766c Rv2857c Rv3057c Rv3085 Rv3174 Rv3224 Rv3391_2 Rv3485c Rv3502c Rv3530c Rv3548c Rv3549c Rv3559c Rv3791 MT0074 MT0156 MT0256 MT0316 MT0455 MT0572 MT0715 MT0789 MT0793 MT0874 MT0954 MT0971 MT1080 MT1177 MT1283 MT1393 MT1530 MT1595 MT1753.1 MT1904 MT1914 MT1931 MT1991 MT2058 MT2133 MT2187 MT2270_2 MT2323 MT2820 MT2836 MT2925 MT3143 MT3170 MT3263 MT3321 MT3498_2 MT3589 MT3606 MT3633 MT3652 MT3653 MT3664 MT3899 ML0108 ML0315 ML0862_2 ML1094 ML1740 ML1807 ML2059 ML2565 L0185 L118271 L121175 L142816 L143350 L1530 L172964 L27694 L77482 SPy0440 SPy0636 SPy1640 SPy1749 SP0320 SP0421 SP0793 SA0122 SA1074 SA1123 SA2119 SA2260 SA2365 lin0362 lin0674 lin1431 lin1796 lin1921 lin1944 lin2278 lin2948 BS_dhbA BS_fabG BS_gdh BS_kduD BS_ycdF BS_ydaD BS_yfhR BS_yhdF BS_yhxC BS_yhxD BS_yjdA BS_yjmF BS_ykuF BS_ykvO BS_ymfI BS_yoxD BS_ytkK BS_yueD BS_yusR BS_yusS BS_yusZ BS_yuxG_2 BS_yvaG BS_yvrD BS_ywfD BS_ywfH BS_yxbG BS_yxjF BS_yxnA BH0316 BH0410 BH0506 BH0707 BH0800 BH0932 BH0938 BH1067 BH1510 BH1511 BH1550_2 BH1842 BH1843 BH2144 BH2167 BH2210 BH2391 BH2491 BH3182 BH3896 sll0330 sll1308 sll1704 sll1709 sll1825 slr0506 slr0886 slr1208_2 slr1994 slr2124 all0352 all0968 all1418 all1420 all1743 all1884 all2963 all3805 all3836 alr0430 alr1722 alr1894 alr2920 alr3252 alr3897 alr4456 alr5182 alr5286 alr5358 entA fabG hcaB hdhA idnO kduD srlD ucpA ybbO yciK ydgB ygcW ygfF yjgI yohE yohF yqhB Z1533 Z1545 Z4865 Z5618 ZentA ZfabG ZhcaB ZhdhA ZkduD ZsrlD ZucpA ZybbO ZyciK ZydgB ZygcW ZyghA ZyjgI ZyohF ECs0556 ECs0635 ECs1275 ECs1285 ECs1471 ECs1843 ECs2312 ECs2327 ECs3024 ECs3297 ECs3407 ECs3561 ECs3630 ECs3699 ECs3887 ECs4340 ECs5003 ECs5226 YPO0839 YPO1287 YPO1452 YPO1456 YPO1460 YPO1565 YPO1599 YPO1724 YPO1811_2 YPO1993 YPO2215 YPO2539 YPO3081 YPO3199 YPO3351 STM0505 STM0598 STM1195 STM1675 STM1717 STM2171 STM2445 STM2835 STM3017 STM3157 STM4483 BU351 VC0774 VC0979 VC1059 VC1119 VC1591 VC1815 VC2021 VC2047 VCA0301 VCA0691 VCA1108 PA0117 PA0182 PA1023 PA1066 PA1330 PA1344 PA1379 PA1470 PA1537 PA1649 PA1827 PA1828 PA2003 PA2099 PA2142 PA2515 PA2554 PA2887 PA2892 PA2918 PA2967 PA3106 PA3128 PA3173 PA3277 PA3324_2 PA3330 PA3387 PA3427 PA3437 PA3507 PA3511 PA3883 PA3957 PA4079 PA4089 PA4098 PA4148 PA4162 PA4389 PA4786 PA5031 PA5150 PA5521 PA5524 HI0048 HI0155 PM1916 PM1968 XF0173 XF0319 XF0671 XF0913 XF1457 XF1726 XF1741 XF2082 XF2269 XF2716 NMB1127 NMB1165 NMB1702 NMB1921 NMA0533 NMA1336 RSc0156 RSc0171 RSc0215 RSc0275 RSc0284 RSc0435 RSc0536 RSc1029 RSc1052 RSc1568 RSc1572 RSc1633 RSc1730 RSc1763 RSc1769 RSc1838 RSc2147 RSc2186 RSc2351 RSc2504 RSc2534 RSc2597 RSc2753 RSc3138 RSc3209 RSc3331 RSp0033 RSp0230 RSp0305 RSp0359 RSp0446 RSp0589 RSp0697 RSp0947 RSp1059 RSp1123 HP0561 HP0890 HP1014 jhp0409 jhp0508 jhp0823 Cj0435 Cj0485 Cj0807 Cj1332 AGc1273 AGc1817 AGc1984 AGc2026 AGc2091 AGc2317 AGc2465 AGc2598 AGc2613 AGc3482 AGc3496 AGc3699 AGc4198 AGc4386 AGc4705 AGc4837 AGc5024 AGl1000 AGl1073 AGl117 AGl126 AGl1444 AGl1541 AGl2039 AGl2341 AGl2470 AGl2601 AGl2690_2 AGl28 AGl2975 AGl3035 AGl3292 AGl3337 AGl3471 AGl3508 AGl3556 AGl43 AGl509 AGl561 AGl595 AGl807 AGl91 AGpA178 AGpA214 AGpA252 AGpA258 AGpA293 AGpA300 AGpA355 AGpA398 AGpA417 AGpA564 AGpA642 AGpA687 AGpA801 AGpT126 AGpT46 SMa0059 SMa0074 SMa0187 SMa0326 SMa0329 SMa0335 SMa0339 SMa0389 SMa0513 SMa0719 SMa0854 SMa0959 SMa1367 SMa1398 SMa1452 SMa1629 SMa1757 SMa1779 SMa1967 SMa2019 SMa2165 SMb20073 SMb20076 SMb20210 SMb20409 SMb20456 SMb20492 SMb20493 SMb20511 SMb20662 SMb20692 SMb20693 SMb20750 SMb20871 SMb20974 SMb21010 SMb21111 SMb21159 SMb21348 SMb21383 SMb21474 SMc00136 SMc00165 SMc00260 SMc00264 SMc00268 SMc00372 SMc00553 SMc00572 SMc00603 SMc00733 SMc00778 SMc00880 SMc01157 SMc01175 SMc01500 SMc01571 SMc01635 SMc01698 SMc01955 SMc01991 SMc02034 SMc02037 SMc02041 SMc02271 SMc02322_2 SMc02336 SMc02339 SMc02486 SMc02522 SMc03878 SMc04391 BMEI0026 BMEI0032 BMEI0090 BMEI0268 BMEI0394 BMEI0395 BMEI0405 BMEI0406 BMEI0666 BMEI0861 BMEI1235 BMEI1250 BMEI1477 BMEI1489 BMEI1709 BMEI1832 BMEII0062 BMEII0063 BMEII0080 BMEII0283 BMEII0316 BMEII0514 BMEII0543 BMEII0816 BMEII0872 mll0352 mll0534 mll1017 mll1036 mll1830 mll1981 mll1982 mll2041 mll2118 mll2196 mll2271 mll2413 mll2989 mll2997 mll3081 mll3237 mll3372 mll3632 mll4054 mll4297 mll4781 mll4921 mll4989 mll5243 mll5433 mll5540 mll5766 mll6713 mll6717 mll6858 mll6862 mll7083 mll7191 mll7199 mll7289_2 mll7334 mll7371 mll7832 mll8174 mll8564 mlr0808 mlr1526 mlr1583 mlr1595 mlr1637 mlr1638 mlr1884 mlr1899 mlr2047 mlr2182 mlr2400 mlr2473 mlr2535 mlr2780 mlr2803 mlr2833 mlr3013 mlr3057 mlr3096 mlr3100 mlr3115 mlr3482 mlr3785 mlr3848 mlr4150 mlr4172 mlr4741 mlr5208 mlr5248 mlr5278 mlr5280 mlr5708_2 mlr5879 mlr5880 mlr6366 mlr6518 mlr6807 mlr6893 mlr7055 mlr7057 mlr7106 mlr7680 mlr7850 mlr7910 mlr9033 msl7784m CC0094 CC0124 CC0246 CC0398 CC0400 CC0417 CC0511 CC0644 CC0821 CC1286 CC1492 CC1571 CC1656 CC1675 CC1803 CC1804 CC1808 CC1816 CC2093 CC2306 CC2655 CC2836 CC2861 CC2966 CC2979 CC3076 CC3175 CC3380 CC3384 CC3685 RP035 RP762 RC0054 RC1183 RC1363 RC1364 CT237 CPn0296 CLUSTER 2 sll1376 alr1909 >COG1029 (Putative duplication confidence score 1.000) CLUSTER 1 AF1650 MA2878 CLUSTER 2 AF1929 MA0309 MA0834 MA1241 MA4178 MTH1559 MTH919 MJ1194m MK0259 MK1527 >COG1035 (Putative duplication confidence score 1.000) CLUSTER 1 AF1833 MA0978 MA3732 MA4220 MA4520_2 MTH1139_1 MTH1297 MTH280_1 MTH341 MJ0005_1 MJ0032 MJ0725 MJ0870_1 MJ1349 MK0322 MK0539 MK0799_1 MK0929 slr1923 all1601 SMb20252 CLUSTER 2 MTH193 >COG1036 (Putative duplication confidence score 0.750) CLUSTER 1 AF1518 MA3741 MTH697 MJ0730 CLUSTER 2 MA0696 MTH1379 MJ0208 MK1484 >COG1044 (Putative duplication confidence score 1.000) CLUSTER 1 aq_538 FN1909 slr0776 alr3074 lpxD ZlpxD ECs0181 YPO1054 STM0226 VC2250 PA3646 HI0915 PM1994 XF1045 NMB0180 NMA0087 RSc1414 HP0196 jhp0182 Cj0576 AGc2556 SMc02093 BMEI0831 mll0635 CC1913 RP009 RC0010 CT243 CPn0302 CLUSTER 2 XF0486 XF0918 XF1419 XF1646 >COG1053 (Putative duplication confidence score 0.700) CLUSTER 1 AF0681 AF1463 AF1670 VNG1306G MTH1502 MJ0033 MK0828 Ta1001 TVN0747 PAE0716 PAE2563 PAE2564 SSO2356 APE0950 YJL045w YKL148c SPAC1556.02c aq_594 TM0427 DR0952 CAC0104 Cgl0367 Rv0248c Rv1552 Rv3318 MT0262 MT1603 MT3419 ML0697 SA0995 BS_sdhA BH3092 slr1233 all2970 frdA sdhA ZfrdA ZsdhA ECs0748 ECs5135 YPO0360 YPO1111 STM0734 STM4343 VC2089 VC2656 PA1583 PA2298 HI0835 PM0201 XF1072 NMB0950 NMA1145 RSc1994 HP0192 jhp0178 Cj0409 Cj0437 AGc4792 SMc02349 SMc02465 BMEI0161 mll4263 mlr9192 CC3527 RP128 RC0170 CT592 CPn0789 CLUSTER 2 YEL047c YJR051w SPAC17A2.05 FN0050_2 Cgl2564 Cgl2581 Rv1817 Rv3537 MT1865 MT3641 L137630 lin0374 STM0691 PA2243 >COG1058 (Putative duplication confidence score 1.000) CLUSTER 1 AF2251 VNG0761G Ta0487 TVN0585 PH0439 PAB1305 PAE0875 SSO0103 APE1980 YMR178w TM0703_1 FN1929_1 DR2338_1 CAC3586_1 Rv1901_1 MT1952_1 ML2015_1 SPy2117_1 SP1941_1 SA1127 lin1434_1 BS_cinA_1 BH2385_1 slr0427_1 alr4808_1 yfaY Z3507 ECs3137 YPO1210 STM2293 VC1252 NMB2128 NMA0304 RSc1256 AGc3176 SMc00944 BMEI0937 mll0144 CC2674 CLUSTER 2 STM2288 >COG1061 (Putative duplication confidence score 1.000) CLUSTER 1 AF0358 VNG1406Gm VNG6130G VNG7093 MA1603_2 MA2403 MA2897 Ta1016 TVN0573 PH0210 PH0450 PH1064_1 PAB0128 PAB1312 PAE1611 PAE2446 SSO0473 SSO0959 SSO1879 APE1073 YDR332w YIL143c SPAC17A5.06 SPBC3B8.12 ECU01g1060 FN0448 FN1974_2 DRA0131_1 CAC2824_2 Cgl0793 Cgl1126_2 Cgl1533_2 Rv0861c MT0884 ML2157 SPy0669 SP0575 SA2276 SA2277_2 lin2589 all2951 all8075 alr4703 alr4909 alr7157 yejH_1 Z1129_2 Z1568_2 ZyejH_1 ECs1305_2 ECs3076_1 YPMT1.30 YPO1265_1 STM0900 STM2223_1 VC0812_2 VC1636_1 TP0380 CLUSTER 2 Cgl1868 Rv1179c_1 Rv2917 MT1217 MT2985 ML1624 >COG1066 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1773 CLUSTER 2 aq_552 TM0199 FN0157 DR1105 CAC3188 Cgl2612 Rv3585 MT3691 L0303 SPy0236 SA0484 lin0265 BS_sms BH0104 slr0448 alr3823 sms Zsms ECs5347 YPO0443 STM4579 VC2343 PA4609 HI1597 PM0252 XF1378 NMB0782 NMA0992 RSc1372 HP0223 jhp0209 Cj1205c AGc1991 SMc00556 BMEI1486 mll7835 CC1660 RP546 RC0810 CT298 CPn0053 TP1022 >COG1071 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1926G VNG2217G Ta1438 TVN0102 PAE2644 APE1677 DR0029 Rv2497c MT2572 L0033 SA1348 lin1044 lin1409 BS_bfmBAA BS_pdhA BH0213 BH2655 BH2763 PA2247 PA3417 RSc1797 AGl2716 SMb20020_1 SMc03201 BMEII0748 mll4473 CT340_1 CPn0033_1 MYPU_7640 MPN393 MG274 CLUSTER 2 SSO1369 SSO1525 YER178w SPAC26F1.03 ECU09g1040 Rv0843 MT0865 SPy1026 SP1164 BS_acoA BH0776 BH1822 slr1934 alr2708 PA4150 AGc2636 SMc01030 BMEI0854 BMEII0061_1 BMEII0216_1 mll3629 mlr0383 CC1726 RP261 RC0347 CT245 CPn0304 >COG1072 (Putative duplication confidence score 0.778) CLUSTER 1 TVN0137_2 Cgl0968 Rv1092c MT1124 ML1954 L66222 SPy1233 SP0839 lin0923 BS_yqjS BH2875 coaA ZcoaA ECs4901 YPO3758 STM4139 VC0320 HI0631 PM1747 AGc59 SMc02567 BMEI2039 mlr5019 CLUSTER 2 YFR007w SPAC227.14 yggC Z4273 ECs3804 AGc100 AGl262 SMc02167 BMEI1883 mll4957 >COG1073 (Putative duplication confidence score 1.000) CLUSTER 1 AF0675 AF1563 VNG1418C MA0077 MA0419 MA2933 MA3920 PAB2176 APE1244_1 YNL320w SPBC32H8.03 ECU09g0730 TM0336 FN0852 DR1053 DR1064 DR1915 DR1931 DR2248 DR2478 DR2551 DRB0023 CAC2725 CAC3022 CAC3407 CAC3665 Cgl1404_1 Rv2307c MT2364 L123536 L15267 SPy1892 lin1094 lin2180 lin2363 BS_yitV BS_yqkD BS_ytaP BH1308 BH2917 all8511 ycjY yfhR yjfP Z0347 Z0370 Z2442 Z2444 Z2445 Z3802 ZyjfP ECs0310 ECs0332 ECs1907 ECs1908 ECs1909 ECs3400 ECs5166 YPO2002 STM2547 STM4380 VCA0863_2 PA1680 PA2168 PA2218 PA3695 PA3829 PM1361 XF1745 XF1750 RSc0206 RSc1887_1 AGl2362 SMa0171 SMa1898_1 BMEI1884 mlr4383 mlr6657 CC0882 CT149 CT206 CPn0152 CPn0161 CLUSTER 2 yafA ZyafA ECs0266 YPO3224 STM0318 VC2276 >COG1076 (Putative duplication confidence score 0.600) CLUSTER 1 YGL018c SPAC144.08 ECU02g0690 sll0909 hscB ZyfhE ECs3393 YPO2893 YPO3641 STM0567 STM2540 BU604 VC0751 PA3811 HI0375 PM0321 NMB1383 NMA1598 RSc1023 RP201 RC0263 CLUSTER 2 djlA ZyabH ECs0060 YPO0496 STM0094 VC0447 PA0598 HI0271 PM1878 Cj0954c AGc3834 SMc01853 BMEI0564 mll1571 mll4676 CC2134 >COG1079 (Putative duplication confidence score 1.000) CLUSTER 1 AF0889 VNG0897G PH1711 PAB0305 PAE3118 PAE3411 APE0067 APE2586 TM0105 DR0251 CAC0705 L167877 SPy1225 SP0848 lin1428 BS_yufQ alr5368 PA0138 RSc2175 AGc207 AGc3294 SMa1514 SMa2123 SMa2369 SMb20125 SMc00244 SMc04125 BMEII0087 BMEII0701 mll0502 mll4174 mlr3157 mlr6804 mlr7063 TP0302 TP0323 BB0679 UU013 MYPU_6170 MPN260 MG121 CLUSTER 2 BB0316 >COG1085 (Putative duplication confidence score 1.000) CLUSTER 1 AF1331 MA3680 PH0365 PAE1184 YBR018c SPBPB2B2.10c TM0896 TM1191 CAC2844 Cgl2030 Rv0619 L51063 galT ZgalT ECs0786 YPO1138 STM0775 VC1596 HI0820 PM1036 CLUSTER 2 Rv0618 >COG1094 (Putative duplication confidence score 1.000) CLUSTER 1 AF1805 VNG2227C MA0893 MTH1006 MJ0443 MK0513 Ta0397 TVN1176 PH1566 PAB0406 PAE3473 SSO2373 APE0754 YOR145c SPAC2C4.11c ECU11g0750 CLUSTER 2 YCL059c SPBC25B2.05 ECU04g0510 >COG1103 (Putative duplication confidence score 0.500) CLUSTER 1 AF0028 MA0722 CLUSTER 2 AF0181 MTH1067 MJ1678 MK0229 >COG1104 (Putative duplication confidence score 1.000) CLUSTER 1 AF0186 AF0564 MA0808 MA2718 MA3264 YCL017c SPBC21D10.11c ECU11g1770 aq_1053 aq_739 TM1692 FN0058 DR0215 CAC2234 CAC2972 Cgl1043 Cgl1203 Rv3025c MT3109 ML1708 L111126 L122222 SPy0816 SPy1122 SP0880 SP1094 SA1450 SA1538 lin1548 lin1635 lin2130 BS_nifS BS_nifZ BS_yrvO BH1217 BH1260 BH3204 sll0704 slr0387 all1457 alr2505 alr3088 yfhO ZyfhO ECs3396 YPO2138 YPO2896 STM2543 BU602 VC0748 PA2062 PA3814 HI0378 PM0318 NMB1379 NMA1594 RSc1019 RSp0173 HP0220 jhp0206 Cj0240c AGc3350 SMc00529 BMEI1043 mll5865 mlr0015 CC1865 RP486 RP487 RC0730 RC0731 CT258 CPn0396 TP0863 CLUSTER 2 CT721 CPn0862 >COG1107 (Putative duplication confidence score 1.000) CLUSTER 1 AF1337 VNG0779C MA0917 MTH763 MJ1198 MK0157 PH0340 PAB1284 CLUSTER 2 VNG1511C >COG1110 (Putative duplication confidence score 1.000) CLUSTER 1 AF1024 MJ1512_3 MK0289 PH0800_1 PH0800_3 PAB2423 PAE1108 SSO0420 SSO0963 APE1340 APE1376 aq_1159 aq_886 TM0173 CLUSTER 2 MJ1512_1 MK0049 >COG1112 (Putative duplication confidence score 1.000) CLUSTER 1 AF1388 AF1960 VNG1501G VNG2167G MA3490 MTH1634 MTH487 MJ0104 MK0070 Ta1398 PH0109_2 PH0909 PAB0067_2 PAB1561 SSO1456 YER176w YHR164c YKL017c YLR430w YMR080c SPAC16C9.06c SPAC6G9.10c SPBC16D10.04c SPBC29A10.10c SPCC1739.03 SPCC737.07c ECU05g1110 ECU09g1800 ECU10g1640 aq_2057 aq_791 TM0005 TM0618 TM1411_2 FN0949 FN1445 CAC3036 Rv1251c_2 MT1290_2 ML1098_2 SA0089 sll1582 yjhR Z1202 Z1642 ECs1384 STM4489 PA2727_3 XF2409 HP0435 HP0447 RC1124 RC1125 RC1126 UU389 UU571 MYPU_1220 MPN153 MG140 CLUSTER 2 PA2728 >COG1113 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0727 CAC1472 Cgl0463 Cgl1083 Cgl1129 Rv0346c Rv0522 Rv1704c Rv2127 MT0361 MT0544 MT1744 MT2186 ML1304 ML1305 L160176 L161441 L18622 L73435 SPy1654 SA1519 SA2109 SA2226 SA2227 lin0780 BS_aapA BS_gabP BS_ybxG BS_ycgH BS_ydgF BS_ytnA BS_yvbW BH2171 ansP aroP cycA gabP pheP proY yifK ZansP ZaroP ZcycA ZgabP ZpheP ZproY ZyifK ECs0116 ECs0452 ECs0614 ECs2057 ECs3524 ECs4729 ECs5186 YPO1743 YPO1859 YPO1937 YPO3201 YPO3421 YPO3854 YPO4015 STM0150 STM0400 STM0568 STM1584 STM2793 STM3930 STM4398 PA0129 PA0789 PA0866 PA2079 PA3000 PA5097 AGl2082 BMEII0038 CLUSTER 2 Cgl0998 >COG1117 (Putative duplication confidence score 1.000) CLUSTER 1 AF1359 VNG0452G VNG2482G MA0890 MTH1731 MJ1012 MK1687 PAB0700 PAE1393 SSO0488 APE0050 aq_1055 TM1261 DRA0160 CAC1708 Cgl2518 Rv0820 Rv0933 MT0842 MT0960 ML2189 L154481 L155408 SPy1241 SPy1242 SP1396 SP1397 SP2087 SA1218 lin2638 lin2639 BS_yqgJ BS_yqgK BH2991 sll0683 sll0684 slr1250 all0907 all0908 all4572 pstB ZpstB ECs4661 YPO2833 YPO4114 STM3854 VC0726 VCA0073 PA5366 HI1380 PM0433 XF2144 RSc1532 Cj0616 AGc743 SMc02142 BMEI1986 mll3719 CC0292 BB0218 UU200 MPN609 MG410 CLUSTER 2 BS_yjkB >COG1118 (Putative duplication confidence score 1.000) CLUSTER 1 Rv1859 MT1907 Z4271 ECs3803 STM3075 CLUSTER 2 Rv2397c MT2468 BH3130 sll0739_2 slr1455 all0126 alr2433_2 cysA ZcysA ECs3293 YPO3012 STM2441 VC0541 PA0280 XF1347 NMB0879 NMA1097 RSc1347 RSp1145 HP0475 jhp0427 Cj0300c AGc1506 AGl2655 SMa2067 SMb21130 BMEI1838 mlr1669 CC1598 >COG1120 (Putative duplication confidence score 1.000) CLUSTER 1 AF0430 AF1401 VNG1371Gm VNG2552G VNG2558G MA0950 MA1132 MA1198 MA1233 MA2150 MA2776 MA3358 MA3453 MA3642 MA3919 MA3933 MA4532 MA4606 MJ0089 MJ0873 Ta1410 TVN1429 PH0791 PH1235 PAB0678 PAB1536 SSO0487 APE1055 TM0078 TM0191 FN0302 FN0307 FN0770 FN0817 FN0882 FN1968 DR2590 DRB0121 CAC0791 CAC1989 CAC2443 Cgl0038 Cgl0491 Cgl0646 Cgl0655 Cgl1590 Cgl2059 Cgl2784 SPy0386 SPy1793 SP1035 SA0602 lin2074 lin2286 lin2523 BS_fhuC BS_yfmF BS_yusV BS_yvrA_1 BH1039 BH1081 BH1587_1 BH3292 BH3295 slr1318 all0389 all2584 alr3241 alr4033 fecE fepC fhuC Z1964 Z4385 ZfepC ZfhuC ECs0155 ECs0627 ECs1697 ECs3916 YPO1312 YPO1345 YPO1533 YPO3392 STM0192 STM0590 STM0771 VC0201 VC0779 PA2912 PA4158 HI1272 HI1470 PM0128 PM1080 PM1147 PM1309 RSc2398 HP0888 jhp0821 Cj1616 AGl1656 AGl2292 AGl2857 AGl2867 AGpA452 SMa1741 SMb20058 SMb21429 BMEI0660 BMEII0537 mlr8227 CC1193 UU069 UU435 MPN416 MG290 CLUSTER 2 MA2778 >COG1122 (Putative duplication confidence score 1.000) CLUSTER 1 AF0731 AF1170 AF1841 VNG1631G VNG2317G MA0394 MA0870 MA1418 MA1747 MA3551 MA4020 MA4021 MA4341 MA4342 MTH133 MTH1704 MTH454 MJ1088 MJ1572 MK0182 PH0132 PH1815 PAB0249 PAB2260 PAE2532 SSO0167 SSO1893 SSO2030 APE2154b APE2406 APE2408 TM0222 TM1663 FN2004 FN2005 DR2469 DRA0269 CAC0773 CAC1368 CAC3101 CAC3102 Cgl0519 Cgl1055 Cgl1914 Rv2326c MT2388 ML0848 L123777 L75718 L76755 SPy1787 SPy2194 SPy2195 SP0483 SP0720 SP1438 SP2220 SP2221 SA0928 SA2020 SA2021 SA2476 lin1170 lin2749 lin2750 BS_ybaE BS_ybxA BS_ykoD BH0164 BH0165 sll0385 sll1623 slr0354 all1547 all4546 alr3946 alr3949 Z4270 ECs3802 STM2020 STM3074 VC1525 HI1618 RSc2632 AGc1362 SMc00962 BMEI0635 BMEI0636 TP0227 UU538 UU539 MYPU_3860 MYPU_3870 MPN193 MPN194 MPN432 MPN433 MG179 MG180 MG303 MG304 CLUSTER 2 Cgl2770 >COG1126 (Putative duplication confidence score 1.000) CLUSTER 1 AF0680 MA0788 MA0789 PAE2001 APE1891 TM0591 FN0801 DR1648 CAC0112 CAC0378 CAC0879 CAC3327 CAC3618 Cgl1298 Cgl1905 L164012 L2385 L37916 SPy0276 SPy1275 SPy1316 SPy1506 SPy1657 SP0452 SP0610 SP0709 SP0824 SP1242 SP1460 SP1501 SA1674 SA2200 lin0841 lin1850 lin2353 lin2440 BS_glnQ BS_hisP BS_yckI BS_yqiZ BS_yxeO BH0172 BH1463 slr1735 alr4167 glnQ gltL yecC yhdZ ZglnQ ZgltL ZyecC ZyhdZ ECs0691 ECs0887 ECs2655 ECs4144 YPO1848 YPO2514 YPO2612 YPO3254 STM0662 STM0828 STM1635 STM1951 VC0008 VC1359 VCA1037 PA1256 PA1339 PA4192 PA5074 HI1078 NMB0696 NMB0789 NMA0900 NMA1000 RSc0484 RSc2106 RSc2260 RSc3408 RSp0428 RSp0479 RSp0932 HP1171 jhp1098 Cj0469 Cj0902 Cj0922c AGc2571 AGc2580 AGc2909 AGl1162 AGl1253 AGl257 AGl2810_2 AGl2925 AGl381 AGl402 AGl671 AGpA331 AGpA712 AGpA9_2 SMa0083 SMa0489 SMa0508 SMa2195 SMb20266 SMb20427 SMb21096 SMb21138 SMc02121 SMc03135 SMc03894 BMEI0108 BMEI0111 BMEI1208 BMEII0599 mll3858 mlr2206 mlr3801 mlr7132 mlr8154 mlr9616 CC1439 RP868 RC1341 CT130 CPn0191 CLUSTER 2 RSc1743 >COG1132 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0123G MA2472 MA2473 MA2939 PH1735 PH1736 PAB2147 PAB2148 PAE1878 SSO3012 YDR135c YGR281w YHL035c YKL209c YKR103w YKR104w YLL015w YLL048c YLR188w YPL270w SPAC30.04c SPAC3F10.11c SPAC9E9.12c SPBC2G5.09c SPBC359.05 SPBC9B6.09c SPCC663.03 ECU01g0200 ECU01g1410 ECU03g0240 ECU04g0480 ECU10g1230 ECU11g1200 aq_1563 TM0043 TM0287 TM0288 TM1256 TM1310 TM1319 TM1328 FN0598 FN0614 FN0615 FN1080 FN1435 FN1436 FN1820 DR0095 DR0096 DR0163 DR2051 DR2052 DR2379 DR2404 DRA0349 CAC0661 CAC1558 CAC1613 CAC2392 CAC2393 CAC2755 CAC2756 CAC3281 CAC3282 CAC3414 CAC3415 Cgl0236 Cgl0928 Cgl0929 Cgl0939 Cgl0940 Cgl1106 Cgl1122 Cgl1398 Cgl1399 Cgl1488 Cgl1489 Cgl2025 Cgl2026 Cgl2246 Rv0194_1 Rv0194_2 Rv1272c Rv1273c Rv1348_2 Rv1349 Rv1620c MT0204 MT1310 MT1311 MT1390_2 MT1392 MT1656 ML1113 ML1114 L102979 L104789 L109162 L110899 L116532 L162870 L59135 L61006 L61680 SPy0229 SPy0230 SPy1084 SPy1148 SPy1149 SPy1790 SP0137 SP1342 SP1357 SP1358 SP1434 SP1435 SP1839 SP1840 SP1918 SP1919 SP2073 SP2075 SA0599 SA1683 SA2216 SA2217 lin0155 lin0156 lin0616 lin0617 lin0829 lin1098 lin1691 lin1692 lin2888 lin2894 lin2895 BS_yfiB BS_yfiC BS_ygaD BS_yheH BS_yheI BS_yknU BS_yknV BS_yvcC BS_ywjA BH0713 BH0813 BH0814 BH0815 BH0941 BH1125 BH1126 BH1157 BH1158 BH2335 BH2336 BH3891 sll1276 sll1725 slr0615 slr1149 slr1488 slr1494 slr2019 all0640 all1294 all2146 all2622 all2623 all4730 all4731 all4732 all4955 all5193 alr0583 alr1554 alr1978 alr2835 alr4715 alr5199 asl1293 mdlA mdlB msbA ZmdlA ZmdlB ZmsbA ECs0502 ECs0503 ECs0997 YPO0770 YPO0771 YPO1395 YPO1735 YPO1913 YPO1914 YPO3144 YPO3145 STM0460 STM0461 STM0984 STM2774 BU479 BU480 VC0199 VC1499 VC1878 VCA0996 PA0860 PA1113 PA3228 PA4222 PA4223 PA4997 HI0060 HI0664 HI1051 PM0861 PM1301 PM1473 XF1081 XF2582 NMB0264 NMB1919 NMA0535 NMA2223 RSc1808 RSc1809 RSc2200 HP0600 HP1082 HP1206 jhp0343 jhp0547 jhp1129 Cj0803 Cj1130c AGc3190 AGc4077 AGc4079 AGc4668 AGc4944 AGl2179 AGl309 AGl552 SMb20813 SMb20941 SMb21191 SMb21268 SMb21269 SMc00185 SMc00186 SMc02836 SMc03900 SMc03991 BMEI0323 BMEI0471 BMEI0472 BMEI0984 BMEI1742 BMEI1743 BMEII0250 mll0815 mll2714 mll2715 mll3934 mll5254 mll5362 mll7116 mll7118 mlr1948 mlr3255 mlr4641 mlr5867 mlr8326 CC0305 CC3274 CC3420 RP214 RP387 RP388 RP696 RC0286 RC0301 RC0534 RC1073 CT264 CPn0413 UU059 UU060 MYPU_0390 MYPU_0400 MYPU_0410 MYPU_7410 MYPU_7420 MPN018 MPN019 MG014 MG015 CLUSTER 2 PAE2301 >COG1134 (Putative duplication confidence score 1.000) CLUSTER 1 AF0041 AF0290 MA1177 aq_1094 CAC2328 Cgl0201 Rv3781 MT3890 ML0114 L137446_1 L4342 SPy0790 SA0593 lin1063 BS_tagH_1 BH3659 sll0575 slr0982 slr2108 ssr2802 all0916 alr4486 STM0723 VC0247 PA1386 PA5450 PM0781 XF2568 NMB0074 NMA0195 Cj1447c SMb20832 BMEI1416 mll7564 CC0634 RP003 RC0003 CLUSTER 2 SA1688 >COG1136 (Putative duplication confidence score 1.000) CLUSTER 1 AF1018 AF1469 AF1819 VNG0002G VNG0799C MA0377 MA1120 MA1668 MA1752 MA2275 MA2488 MA2548 MA2840 MA3171 MA3582 MA3957 MA3960 MTH696 MJ0796 MJ1508 MK1654 PAE2286 PAE2699 PAE2785 SSO0688 SSO1034 SSO1078 APE1253 aq_297 aq_417 TM0194 TM0352 TM0705 FN0582 FN0827 FN1348 FN1352 DR0473 DR2192 DRA0280 DRB0049 CAC0066 CAC0164 CAC0226 CAC0245 CAC0319 CAC0373 CAC0453 CAC0526 CAC0822 CAC1518 CAC1535 CAC1998 CAC2256 CAC2732 CAC3560 CAC3585 CAC3616 Cgl0616 Cgl0833 Cgl1966 Cgl2501 Cgl2938 Rv0073_1 Rv0986 Rv2564_1 MT0079_1 MT1014 MT2640_1 L110431 L119891_1 L132038 L15262 L192122 L52030 L79717 L94760 SPy0773 SPy0837 SPy1257 SPy1912 SPy2031 SP0111 SP0600 SP0687 SP0786 SP0912 SP1341 SP1653 SP1957 SP1987 SA0192 SA0297 SA0616 SA0888 SA2149 SA2416 SA2492 SAP022 lin0233 lin0418 lin0746 lin0866 lin1186 lin1540 lin1859 lin2219 lin2471 lin2725 lin2914 BS_yclH BS_yknY BS_ytrE BS_ytsC BS_yvcR BS_yvrO BS_yxdL BH0273 BH0281 BH0286 BH0599 BH0753 BH1756 BH2699 BH3122 BH3505 BH3673 BH3913 sll0484 slr0544 all0439 all0807 alr0447 alr1507 alr3649 alr3712 alr4282 alr4975 lolD ybjZ_1 Z1552 ZybjZ_1 ZycfV ECs0965_1 ECs1292 ECs1495 YPO1365_1 YPO1497 YPO1627 YPO1946 YPO3000_1 STM0942_1 STM1218 BU296 VC1568 VC1630 VC1883 VC2553 VCA0855 PA0073 PA2390_1 PA2987 PA4064 PA4594 HI1549 PM0448 PM0561 PM0996_1 PM1823 XF1077 NMB0549_1 NMB1234 NMA0729_1 NMA1402 RSc1118 RSp1464 HP0179 HP0748 jhp0167 jhp0685 Cj0607_1 Cj1180c Cj1277c Cj1663 AGc2377 AGc3334 AGpA191 AGpA247_1 AGpA663 SMa1120 SMb20370 SMc01376 SMc04351_1 BMEI0360_1 BMEI1138 mll1341 mlr1396 mlr4461 mlr4463 CC0932 CC1929 CC2091 RP700 RC1077 CT152 CPn0248 TP0581 TP0964 BB0080 BBJ26 UU118 MYPU_0640 MYPU_0660_1 MYPU_6250_1 MYPU_6260_1 MYPU_7730 MPN081 MPN683 MPN685 MG065 MG467 MG468.1 CLUSTER 2 MA1227 MA1273 MTH1673 MJ0121 MK0809 FN0130 >COG1142 (Putative duplication confidence score 0.500) CLUSTER 1 AF0950 MA3283 MTH105_1 MTH1714 MTH1736 MTH1737 MJ0155 MJ0264 MJ0265 MK0084 MK0725 PH0893 PAB2084 TM0396 aegA_1 hycB hydN hyfA ygfS ygfT_1 yiaI ZhycB ZhydN ZhyfA ZyffG_1 ZygfS ZygfT_1 ZyiaI ECs3330_1 ECs3343 ECs3569 ECs3580 ECs3758 ECs3759_1 ECs4456 YPO0342_1 YPO0343 STM2479_1 STM2843 STM2852 STM3666 CLUSTER 2 PH1750 PAB0213 sll0031 alr2308 >COG1150 (Putative duplication confidence score 1.000) CLUSTER 1 AF1376 MA3127 MA4236 MTH1878 MJ0744 MJ0864 MK0573 SSO1127 aq_391 CLUSTER 2 SSO1134 aq_398 >COG1152 (Putative duplication confidence score 1.000) CLUSTER 1 AF1100 AF2397 MA1016 MA3860 MA4399 MTH1708 MJ0153 MK0717 MK0719 CLUSTER 2 MJ0152_1 >COG1154 (Putative duplication confidence score 0.667) CLUSTER 1 aq_881 TM1770 FN1208 DR1475 CAC2077 Cgl1856 Rv2682c Rv3379c MT2756 ML1038 lin1402 BS_yqiE BH2779 sll1945 alr0599 dxs Zdxs ECs0474 YPO3177 STM0422 BU464 VC0889 PA4044 HI1439 PM0532 XF2249 NMB1867 NMA0589 RSc2221 HP0354 jhp0328 Cj0321 AGc1351 SMc00972 BMEI1498 mlr7474 CC2068 CT331 CPn1060 TP0824 CLUSTER 2 FN1464 CAP0106 L108911 L123365 >COG1157 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1595 TM0218 CAC2159 lin0724 BS_fliI BH2455 fliI Z4194 ZescN ZfliI ECs2680 ECs3730 ECs4568 YPCD1.40 YPO0267 YPO0717 YPO1827 STM1415 STM1972 STM2894 BU076 VC2130 PA1104 PA1697 RSp0393 RSp0870 HP1420 jhp1315 Cj0195 AGc980 SMc03025 BMEII1105 mlr2909 mlr6342 CC3040 CT669 CPn0707 TP0402 BB0288 CLUSTER 2 CT717 CPn0858 >COG1160 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1919 TM1446 FN0170 DR2308 CAC1711 Cgl1394 Rv1713 MT1753 ML1372 L0156 SPy0341 SP1709 SA1307 lin2051 BS_yphC BH1638 slr1974 alr0483 yfgK Z3774 ECs3373 YPO2875 STM2519 BU607 VC0763 PA3799 HI0136 PM0105 XF0465 NMB0852 NMA1063 RSc1219 HP0834 jhp0773 Cj0386 AGc4180 SMb20995 BMEI1550 mlr7404 CC1654 RP677 RC1030 CT703 CPn0844 TP0689 BB0508 UU383 MYPU_0880 MPN475 MG329 CLUSTER 2 TM0445 CAC1651 >COG1171 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2100G Ta0113 TVN0190 TVN1130 PAE2316 SSO0248 APE1498 YCL064c YER086w YKL218c SPBC1677.03c SPCC320.14 TM0356 FN1411 DR0567 Cgl0953 Cgl2076 Rv1559 MT1610 ML1209 L0081 SP0450 SA1271 SA1866 lin2098 BS_ilvA BH1711 slr2072 all0262 alr4232 ilvA tdcB ZilvA ZtdcB ECs3997 ECs4706 YPO3896 YPO4089 STM3244 STM3905 VC0027 PA0331 PA0851 PA1326 PA2683 HI0738.1 PM1624 XF1819 NMB0878 NMA1096 RSc0449 RSc0948 RSp1516 Cj0828c AGc2225 AGc4956 AGl246 SMa1872 SMb20432 SMc00936 BMEI0935 mll4597 mll7611 mlr0162 mlr3510 mlr7138 CC3105 CC3635 RP449 RC0628 CLUSTER 2 ygeX ZygeX ECs3744 STM1002 mlr7936 >COG1181 (Putative duplication confidence score 1.000) CLUSTER 1 MA4352_2 aq_521 TM0259 FN1454 DR0362 CAC2895 Cgl1289 Rv2981c MT3059 ML1678 L140690 SPy1421 SP1671 SA1887 lin0848 BS_ddlA BH1621 slr1874 all0980 ddlA ddlB Z0477 ZddlB ECs0096 ECs0431 YPO0557 STM0130 STM0380 VCA0572 PA4201 PA4410 HI1140 PM0144 XF0799 NMB0424 NMA2060 RSc2842 HP0738 jhp0675 Cj0798c AGc3788 SMc01871 BMEI0582 BMEI0727 mll1551 mll1812 CC2543 RP249 RC0333 CT762_2 CPn0905_2 TP0670 BB0200 CLUSTER 2 CAC1540 lin2913_2 BH3653_1 BH3654_1 BH3655_1 slr2002_1 all3879_1 alr0573 alr1779 PA3460_2 PM1048_2 SMb20482_2 >COG1183 (Putative duplication confidence score 0.833) CLUSTER 1 AF2044 VNG0784G MA0116 MTH1027 MJ1212 MK0161 YER026c SPCC1442.12 FN0991 CAC0676 CAC0798 Rv0436c MT0452 ML0310 BS_pssA BH1310 PA4693 XF0442 NMB1318 NMA1532 RSc2073 HP1071 jhp0354 Cj1114c AGc1962 SMc00552 BMEI1490 mlr5886 mlr7822 RP242 RC0326 CT826 CPn0983 CLUSTER 2 PA3857 AGc3299 SMc00247 BMEII0695 mll0506 BB0249 >COG1186 (Putative duplication confidence score 0.929) CLUSTER 1 YLR281c aq_1840 TM1579 FN1341 DR0173 CAC2845 CAC3384 Cgl0778 Rv3105c MT3188 ML0667 L0374 SPy0643 SA0709 lin2653 BS_prfB BH3605 sll1865 all0273 prfB prfH ZprfB ZprfH ECs0263 ECs3763 YPO0889 STM0315 STM3041 BU436 VC0663 PA5470 HI1212 PM0190 XF1111 NMB2138 NMA0224 RSc1030 RSp0699 HP0171 jhp0157 Cj1455 AGc2479 SMc01333 BMEI1054 mlr0216 CC1874 RP274 RC0368 CT459 CPn0575a TP0576 BB0074 CLUSTER 2 YOL114c SPAC589.11 alr4696 yaeJ ZyaeJ ECs0193 YPO1066 STM0240 PA0868 AGc57 SMc02563 BMEI2038 mlr5097 CC1214 >COG1190 (Putative duplication confidence score 1.000) CLUSTER 1 MA0760 PAE1840 SSO0090 YDR037w YNL073w SPBC17G9.03c SPCC18.08 ECU04g0580 aq_1202 TM1705 FN0466 DR0372 CAC3197 Cgl2631 Rv1640c_2 Rv3598c MT1678_2 MT3705 ML0233 ML1393_2 L0347 SPy0595 SP0713 SA0475 lin0260 BS_lysS BH0098 slr1550 all4071 lysS lysU ZlysS ZlysU ECs3762 ECs5111 YPO0888 STM3040 BU437 VC0664 PA3700 HI1211 PM0189 XF1112 NMB1425 NMA1638 RSc1028 HP0182 jhp0170 Cj0401 AGl794 SMc03173 CT781 CPn0931 UU062 MYPU_3900 MYPU_4020 MPN277 MG136 CLUSTER 2 L129283_2 >COG1191 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1218 TM0902 CAC1226 CAC1689 CAC1695 CAC1696 CAC2143 CAC2306 Rv3286c MT3385 SA1869 lin0894 BS_sigB BS_sigD BS_sigE BS_sigF BS_sigG BS_spoIIIC BS_spoIVCB BH0529 BH1285 BH1538 BH2431 BH2554 BH2556 slr1564 all3853 alr0277 fliA ZfliA ECs2661 YPO0745 YPO1843 STM1956 VC2066 PA1455 RSp1390 HP1032 jhp0392 Cj0061c CT061 CPn0362 TP0709 CLUSTER 2 CAC1770 BS_ykoZ >COG1222 (Putative duplication confidence score 1.000) CLUSTER 1 AF1976 VNG0510G VNG2000G MA4123 MA4268 MTH728 MJ1176 MK0878 PH0201 PAB2233 SSO0271 APE2012 YDL007w YDR394w YGL048c YKL145w YOR259c SPBC16C6.07c SPBC23G7.12c SPBC4.07c SPCC1682.16 SPCC576.10c ECU03g1330 ECU07g0190 ECU07g1640 ECU08g1970 ECU09g1840 ECU10g0130 CLUSTER 2 YOR117w SPAC3A11.12c ECU10g1420 >COG1227 (Putative duplication confidence score 1.000) CLUSTER 1 AF0756 MJ0608 YHR201c SPAC2F3.11 ECU05g0460 TM0587_3 FN1824 DR2576 CAC2138 L62663 SPy0380 SP1534 SA1735 lin1486 BS_yybQ VC1687 CLUSTER 2 TM0587_1 >COG1229 (Putative duplication confidence score 1.000) CLUSTER 1 AF1930 MA0833 MTH1557 MJ1169 MK1529 CLUSTER 2 MA0306 MA4175 >COG1239 (Putative duplication confidence score 0.500) CLUSTER 1 AF1445 MK0192_1 DR2594 Cgl1033 Rv0958 MT0985 CLUSTER 2 VNG1565G_1 MA0877_1 MTH451_1 MTH556 MJ0911 Ta0576_1 TVN0630_1 Cgl1951 Rv2850c_1 MT2916_1 slr1030 slr1777_1 all0152 all0278_1 PA2942 RSp0625_1 >COG1241 (Putative duplication confidence score 1.000) CLUSTER 1 AF0517 VNG2181G MA0681 MA3829 MA4403 MTH1770 MJ0363 MJ0961 MJ1489 MJECL13 MK0965 MK1120 Ta0799 TVN1032 PH0606_1 PH0606_3 PH0606_5 PAB2373_1 PAB2373_3 PAB2373_5 PAE0901 SSO0774 APE0188 YBL023c YBR202w YEL032w YGL201c YLR274w YPR019w SPAC1B2.05 SPAC3F10.01 SPBC211.04c SPBC25D12.03c SPBC4.04c SPCC1682.02c SPCC16A11.17 ECU02g1150 ECU04g0850 ECU05g0780 ECU06g0340 ECU07g0490 ECU08g0290 ECU09g1360 ECU11g0800 CLUSTER 2 PAB0384 >COG1250 (Putative duplication confidence score 1.000) CLUSTER 1 AF0017_1 AF0285_1 AF0434 AF1025 AF1122_1 AF1177 AF1190 AF1206 AF2017 AF2273_1 VNG0681G VNG1313G_1 Ta0291_1 Ta0476 Ta0947 TVN0826 TVN1091 TVN1310_1 PAE1383_1 SSO0647 SSO2514_1 SSO2871 SSO2996 APE1484_1 FN1019 DR1068 DR1487_2 DR2477_1 DRA0143 CAC2009 CAC2708 Rv0468 Rv0860_2 Rv1715 MT0484 MT0883_2 MT1754 ML2161_2 ML2461 SA0224_1 BS_mmgB BS_yusL_1 BH0204 BH1995 BH3488_1 BH3800 fadB_2 ydbU yfcX_2 Z3604_2 ZfadB_2 ECs3224_2 ECs4774_2 YPO2747_2 YPO3766_2 STM2388_2 STM3983_2 VC1047_2 VC2758_2 PA1628 PA1737_2 PA3014_2 PA3590 PA5188 PA5386 RSc0244 RSc0474_1 RSc1759_2 RSc2013 AGc888_2 AGl2460 AGpA493_1 SMb21632 SMc00727 SMc01638_1 SMc02227_2 BMEI0099 BMEII0215 BMEII0497_2 BMEII1020 mll1034 mll4199_2 mlr3490 mlr5041 mlr5629_2 mlr6793 CC0076_2 CC0715 CC3189_2 RP560_1 RC0841 RC0842 CLUSTER 2 CC1813_2 >COG1263 (Putative duplication confidence score 0.765) CLUSTER 1 FN1547_1 CAC0532_1 CAC0570_1 CAC1353_1 CAC3425_1 SPy1986_1 SP0758_1 SP1684_1 SA0183_1 SA0233_1 SA1547_1 SA2114_1 SA2326_1 BS_glvC_1 BS_ptsG_1 BS_ybfS_1 BS_yflF_1 BH0422_1 BH0673_1 BH0844_1 glvCm_1 malX_1 nagE_1 ptsG_1 Z5178_1 ZmalX_1 ZnagE_1 ZptsG_1 ECs0709_1 ECs1479_1 ECs2329_1 ECs4623_1 YPO1608_1 YPO2628_1 STM0685_1 STM1203_1 STM2758_1 BU356_1 VC0995_1 VC2013_1 PA3761_1 PM0876_1 PM1752_1 CC0449_1 CC0538_1 BB0116_1 BB0645_1 BBB29_1 MYPU_0170_1 MYPU_3610_1 MYPU_3640_1 MPN207_1 MG069_1 CLUSTER 2 CAC0423_2 CAC1407_2 Cgl1324_2 Cgl2590_2 Cgl2650 L145238_2 L37906_2 L90678_2 SPy0572_2 SPy1815_2 SPy2097_2 SP0577_2 SP1722_2 SP1884_2 SA0186_2 SA0432_2 SA2167_2 lin0026_2 lin1223_2 BS_bglP_2 BS_sacP_2 BS_sacX_2 BS_treP_2 BS_ybbF_2 BH0296_2 BH0595_2 BH1856_2 BH2216_2 BH3574_2 ascF_2 bglF_2 treB_2 yfeV_2 Z3694_2 ZascF_2 ZtreB_2 ECs3300_2 ECs3571_2 ECs5217_2 YPO3697_2 STM2570_2 VC0207_2 VC0910_2 VCA0653_2 PM1575_2 PM1846_2 RSp1285_2 >COG1285 (Putative duplication confidence score 1.000) CLUSTER 1 aq_447 FN0215 DR0816 CAC3658 Rv1811 MT1859 L63770 SP1823 lin2751 BS_sapB BH0541 BH3225 slr0014 all3396 yhiD ZyhiD ECs4388 YPO1660 YPO2332 STM3764 PA2148 PA2558 PA4635 HI0647 PM1753 RSc1461 AGl1431 AGpAbx97 SMc00799 BMEII0053 TP0774 CLUSTER 2 Rv3008 MT3088 >COG1290 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0582C BS_qcrC_1 BH1674_1 slr0343 alr3422 CLUSTER 2 VNG0583G Ta1222 Ta1228 TVN0367 TVN0373 PAE1350 SSO2656 SSO2805 SSO2970 APE1725 Q0105 Q0120 aq_044 DR0436 Cgl2141 Rv2196 MT2252 ML0879 BS_qcrB BH1673 slr0342 all0253 alr3421 VC0574 PA4430 XF0909 NMB2052 NMA0384 RSc2928 HP1539 jhp1460 Cj1185c AGc4073 SMc00188 BMEI0474 mll2706 mlr0971 CC0473 RP271 RC0359 >COG1292 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1077G Cgl0867 Cgl2259 Cgl2282 Rv0917 MT0942 SA1183 SA1987 SA2408 lin2197 BS_opuD BH1457 BH2645 BH3895 betT caiT yeaV ZbetT ZcaiT ZyeaV ECs0043 ECs0360 ECs2510 YPO1168 YPO2494 STM0074 VC1279 PA3933 PA5291 PA5375 HI1706 PM1791 NMB1277 NMA1483 SMb20333 TP0106 CLUSTER 2 SMc00279 >COG1295 (Putative duplication confidence score 1.000) CLUSTER 1 MA2279 aq_453 FN1154 DR2609 CAC0168 CAC0485 Cgl0927 Rv2707 MT2780 ML1017 L1778 SPy1353 SP0657 SA1699 lin1818 BS_yfkH BH3355 slr0119 all2070 alr3393 rbn Zrbn ECs4809 YPO0028 STM4027 VC2742 PA0951 PA2751 HI0276 PM1616 XF0432 NMB0524 NMA0700 RSc1559 RSp1664 HP1407 jhp1299 Cj1212c AGl2474 SMb21356 SMb21363 SMc00734 BMEI0089 mll2378 mll3481 mll8068 mll9669 mlr9690 CC1840 RP496 RC0670 CT132 CPn0188 MYPU_2020 CLUSTER 2 Cgl0658 Rv3335c MT3439 ML0687 yhjD ZyhjD ECs4402 YPO3985 STM3608 >COG1299 (Putative duplication confidence score 1.000) CLUSTER 1 FN1441_3 DRB0073_2 CAC0234_2 Cgl1891_3 L185031_3 SPy0855_3 SP0877_3 SP1617 SA0655_3 SA2434_2 lin0377_2 lin0423 lin0448 lin2240 lin2429_3 BS_fruA_3 BS_yjdD_2 BH0828_3 fruA_3 frvB_2 frwC hrsA_3 ypdG Z3652 ZfruA_3 ZfrvB_2 ZfrwCm ECs3059_3 ECs3266 ECs4825_2 ECs4878 YPO0404 YPO1300_3 STM2204_3 STM3255_2 STM3858_2 STM4112 VC1821_1 VC1822_2 VC1826_3 VCA0516_2 PA3560_2 HI0446_3 RSc2863_2 BB0408_3 BB0629_3 MYPU_1290_3 MPN078_3 MG062_3 CLUSTER 2 SPy0146 SA0298 SA2320 >COG1310 (Putative duplication confidence score 1.000) CLUSTER 1 AF2198 VNG0778C VNG1818a MA1736 MTH971 MK0214 Ta0623 TVN1035 PH0451 PH1488 PAB1045 PAB1919 PAE2024 SSO0111 APE0681 YDL216c YFR004w YOR261c SPAC1687.13c SPAC31G5.13 SPBC4C3.07 SPCC1682.10 ECU04g0420 ECU11g0570 aq_1691 DR0402 Rv1334 MT1376 sll0864 all2907 Z0978_1 Z1377_1 Z1819_1 Z2143_1 Z2351_1 Z3081_1 Z3314_1 Z6032_1 ECs0840_1 ECs1117_1 ECs1558_1 ECs1646_1 ECs1986_1 ECs2163_1 ECs2237_1 ECs2722_1 ECs2946_1 YPMT1.08c_1 YPO2123_1 STM0922_1 STM1046_1 STM2591_1 PA0639_1 PA2102 RSc1695_1 CLUSTER 2 SPAC19B12.10 >COG1318 (Putative duplication confidence score 1.000) CLUSTER 1 AF0796 MJ1053 MK0231 PH0283 PAB2181 PAE3144 APE0469 aq_2056 TM0369 CLUSTER 2 aq_600 >COG1331 (Putative duplication confidence score 1.000) CLUSTER 1 AF1737 VNG1303C MA3726 MTH753 MTH754 Ta0991 TVN0731 PAE2717 SSO2204 APE2533 aq_2146 DR0844 CAC3546 Rv1084 MT1115 BS_yyaL BS_yyaO all1237 BMEI0004 BMEI0005 mlr4484 CT356 CPn1057 CLUSTER 2 VNG1905C >COG1348 (Putative duplication confidence score 0.500) CLUSTER 1 MA1205 MA1213 MA1633 MA2032_1 MA3627 MA3895 MTH1560 MTH643 MJ0879 MK1416 FN0303 CAC0253 all1455 alr0874 SMa0825 mlr5905 CLUSTER 2 slr0749 all5078 >COG1362 (Putative duplication confidence score 0.667) CLUSTER 1 YHR113w YKL103c SPAC4F10.02 FN0775 CAC0607 Cgl1463 Rv0800 MT0821 ML2213 PA3247 BB0627 CLUSTER 2 TM0365 CAC1091 BB0366 >COG1363 (Putative duplication confidence score 0.667) CLUSTER 1 AF1795 VNG1498G MA3849 MTH437 MJ0555 MK0383 PH0519 PH1527 PH1821 PAB0437 PAB2096 PAB2375 PAE1385 PAE1474 APE1335 TM1048 TM1049 TM1050 DR0229 CAC0214 CAC0215 CAC0216 L193909 SPy0115 SP1865 SA1566 SA2244 lin1180 lin1652 BS_ysdC BS_ytoP BH3132 BH3257 frvX sgcX ypdE Z3649 ZfrvX ECs3264 ECs4824 STM1612 UU280 MYPU_7300 CLUSTER 2 PH0737 PAB0869 FN0999 DR0946 CAC0690 SP0627 SA1198 lin0981 BS_yhfE all3633 PA2172 PA3461 SMb20466 >COG1382 (Putative duplication confidence score 1.000) CLUSTER 1 AF1150 VNG0234C MA3850 MTH678 MJ0987 MK0375 Ta1137 TVN1213 PH0532 PAB1364 PAE2199 SSO0730 APE1440 YLR200w SPAC3A11.13 CLUSTER 2 YNL153c SPAC227.05 >COG1387 (Putative duplication confidence score 0.667) CLUSTER 1 AF1233 AF1550 MA0727_2 MA1289 MA1291 MTH550_2 MTH576 MJ1295 MK0169 MK1681 Ta0758_2 TVN0856_2 PH1316 PAB0560 aq_1422_2 TM0804 FN0428 DR0467_2 CAC0509 CAC2727 Rv3856c MT3971 L37351 SA0990_2 lin1194_2 BS_yshC_2 BH3107_2 ycdX ZycdX ECs1411 YPO2037 STM1136 VCA0894 SMb21226 CLUSTER 2 YFR025c SPCC1672.01 DR0470 lin0579 BS_ytvP BH3206 >COG1388 (Putative duplication confidence score 1.000) CLUSTER 1 aq_652_1 DR0910 DR1325_1 DR1749_1 CAC1232_1 CAC2903 Cgl1707 Rv1288_1 MT1326_1 L127411_2 L137446_2 L68758_2 SA0423_1 SA0620_1 SA0710_1 lin0591_1 lin0591_3 lin0879_2 lin1341 lin1703 lin2666_1 lin2838_2 BS_lytE_1 BS_xlyA_2 BS_yhdD_1 BS_ykvP_2 BS_yneA BS_yocH_1 BS_yojL_1 BS_yrbA BH0693 BH1803_1 BH2879_1 YPO0370_2 VC0344_2 PA4947_2 HI0066_2 PM0903_2 CT601 CT759 CPn0780 CPn0902 BB0625_1 CLUSTER 2 BH1221_1 >COG1398 (Putative duplication confidence score 0.500) CLUSTER 1 YGL055w_1 SPCC1281.06c_1 sll0541 all1599 all4991 RSp0792 RP038_1 RC0062_1 CLUSTER 2 PA0286 RSc2450 >COG1402 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0124C VNG1769Cm MTH651 MJ0116 MK0183 PAE2983 SSO2832 APE0954 TM0413 Rv0695 MT0722 lin2796 BH0226 sll0596 slr0596 all4283 alr1374 AGl731 SMc02977 BMEII0309 mlr1298 mlr3472 CC3578 CLUSTER 2 mlr8484 >COG1433 (Putative duplication confidence score 1.000) CLUSTER 1 AF0668 AF2377 AF2378 AF2388_2 MA2085_2 MA4243 MA4244 MTH1172_2 MTH1175 MTH1177 MJ0327 MJ0580 MK1241 Ta1041m Ta1370 TVN0554 PH0822 PH0880 PH1227 PH1383 PAB0517 PAB1692 PAE1037 TM1290 TM1816 CAC3167 VC1323 CLUSTER 2 PAE1034 >COG1434 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1986 TM1674 DR0210 CAC0352 CAC0441 Cgl0695 Cgl2222 Cgl2946 L169301 L17153 L171552 SA2148 lin1003 lin2536 sll1606 all0244 all1816 all7174 alr1740 alr2467 alr5243 ycbC ydcF ZycbC ZydcF ECs1003 ECs2020 YPO2511_2 STM0098 STM0990 STM1640 VC1698 VC1718 PA2066 PA3985 HI1701 PM0506 XF2101 NMB0004 NMA0251 RSc0146 RSc1968 RSc2460 AGl144 AGl2436 SMc00331 SMc00715 BMEI0074 BMEI0810 BMEI1842 BMEI2016 BMEII0841 mll0674 mlr3524 CC2218 RP875 RC1356 CLUSTER 2 VCA0595 >COG1449 (Putative duplication confidence score 0.500) CLUSTER 1 MA4052 MA4053 MJ1611 Ta0339m TVN0431 PAE3428 SSO0988 CLUSTER 2 Ta0129_1 PH0193 PAB0118 PAB0122_1 PAE1048 PAE3454_1 SSO1172 aq_720 slr0337 alr0627 alr1310 TP0147 >COG1450 (Putative duplication confidence score 0.571) CLUSTER 1 aq_1288 FN2086 gspD YPO0816 YPO2280 VC0402 PA0685 PA1382 PA1868 PA3105 XF1527 RSc3114 Cj1474c mll6829 CC0173 CT572 CT674 CPn0702 CPn0815 CLUSTER 2 Z4197 ZescC ECs3733 ECs4575 YPCD1.52 YPO0257 STM1394 STM2898 PA1716 RSp0874 mll6338 >COG1455 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0386 CAC2964 L177520 L20847 L31294 SPy1917 SPy2050 SP0250 SP0310 SP0474 SP0478 SP1185 SP2022 SA1992 lin0033 lin0326 lin0392 lin0874 lin0900 lin0915 lin2459 lin2832 lin2856 lin2906 BS_licC BS_ydhO BS_ywbA BH0911 BH3919 celB ZcelB ECs2443 YPO2679 STM1313 VC1282 BBB04 CLUSTER 2 VC1211_1 >COG1459 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1285 aq_747 TM0094 FN2094 DR1863 CAC2104 L0314 SPy0102 SP2052 SA1373 lin1383 BS_comGB BH2831 slr0162 slr0163 all2442 hofC hofF ZhofC ECs0110 YPO3427 STM0142 VC0406 VC2425 VC2731 PA0687 PA2676 PA3102 PA4527 HI0297 PM0086 XF1518 XF2538 NMB0333 NMA2155 RSc2309 RSc2826 RSc3116 RSp0149 RSp0467 mlr6821 CC0175 CT570 CPn0817 CLUSTER 2 VC0836 >COG1470 (Putative duplication confidence score 1.000) CLUSTER 1 AF1138 MA1537 PH1368 PAB2446 BH3215 CLUSTER 2 MA4361 >COG1472 (Putative duplication confidence score 0.824) CLUSTER 1 SSO3032 SPBC1683.04 TM0025 TM0076 CAC1075 Cgl0317 Cgl0318 Rv0186 MT0195 lin1840 BH1908 bglX ZbglX ECs3019 YPO0616 YPO2803 STM2166 PA1726 XF0439 XF0845 CC0797 CC0968 CC1105 CC1756 CC2052 CC3054 CLUSTER 2 TM0809 DR1333 CAC0182 Cgl2792 Rv0237 MT0251 ML2569 L100350 BS_ybbD BH0675 sll1538 all1831 ycfO ZycfO ECs1485 YPO1615 STM1209 VC0692 PA3005 HI0959 PM0071 XF2355 NMB0530 NMA0708 RSc0769 RSc1068 AGc3141 SMc02071 BMEI1087 mll1089 mll9166 CC2006 RP706 RC1086 BB0002 BB0620 >COG1473 (Putative duplication confidence score 0.933) CLUSTER 1 VNG0437C MA1192 TVN0740 PH0722 PH1043 PAB0873 SSO1355 SSO1952 TM1516 FN0590 FN0703 FN1063 DR0339 DR1711 CAC0921 CAC1014 Cgl0667 Cgl2031 Cgl2860 Rv3305c MT3404 L182020 L80177 SP2096 SA0098 SA0507 SA1230 SA2120 lin0542 lin1011 lin2950 lin2952 BS_amhX BS_hipO BS_yhaA BS_ykuR BS_yxeP BH1613 BH2668 sll0100 slr1653 all2102 alr4934 ydaJ Z5522 ZydaJ ECs1922 ECs4892 PA2922 PA4344 HI0584 PM1300 RSc2511 RSc2871 Cj0605 Cj0985c AGc4953 AGl2386 AGl2766 AGl2806 AGl3029 AGl849 AGl879 SMb21279 SMc00682 SMc02256 BMEI0033 BMEI0034 mlr2296 mlr3583 mlr7940 mlr9207 CC2456 CC2809 CLUSTER 2 Ta0235 TVN1360 FN1186 CAC0295 Cgl0102 Rv3306c MT3405 SA1935 abgB Z2427 ECs1921 AGl2896 SMc02024 mll7671 CC1556 >COG1479 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1585Cm MA2417_1 MJ0686_1 PH0009 TM0991_1 FN0677 CAC1168 Cgl0713 Cgl1252_1 lin0337 lin0833 all3615_1 all4179 all8551 alr1266 alr4229 alr5156 alr5159 Z5943m_1 Z5949 Z5950 ECs5304 ECs5305_1 ECs5309 ECs5310 YPO3437 VC1766 VC1767 VCA0199 PM0594 PM0595 NMA2230 HP0186 HP0187 HP0426 HP0513_1 HP0629 HP0937 HP0938 HP1396 HP1397 HP1409 jhp0174 jhp0462_1 jhp0572 jhp0872 jhp0873 jhp0955 jhp0957 jhp1301 jhp1302 jhp1430 jhp1431 Cj0008 UU090 UU527 MYPU_1870 CLUSTER 2 HP0188 >COG1483 (Putative duplication confidence score 1.000) CLUSTER 1 AF2338 AF2339 MK1260 PH0902 PAB0589 APE0415 TM0988 SMc02155 CLUSTER 2 AF2340 >COG1486 (Putative duplication confidence score 1.000) CLUSTER 1 TM0434 TM0752 TM1068 TM1834 CLUSTER 2 TM1281 CAC0533 CAC3426 lin0526 lin0540 lin2454 BS_glvA BS_licH BS_lplD BS_melA BH0183 BH0912 BH2228 celF glvG melA Z5177 ZcelF ZmelA ECs2440 ECs4622 ECs5101 YPO0166 STM1316 STM4298 VC1284 AGl436 AGl446 SMb21463 SMb21643 SMb21648 mlr6443 mlr6450 >COG1492 (Putative duplication confidence score 1.000) CLUSTER 1 AF1338 VNG1576G MA3250 MTH787 MJ0484 MK1414 Ta0075 TVN0031 SSO3233 FN0977 FN2070 DRB0012 CAC1374 Rv0255c MT0268 lin1171 BH1591 slr0618 alr2377 STM2019 VCA0727 PA1277 RSc2390 AGc5093 SMc04309 BMEI0690 mll1198 CC1751 CC2694 CLUSTER 2 MTH1497 MJ0138 >COG1498 (Putative duplication confidence score 1.000) CLUSTER 1 AF2088 VNG1174G MA0340 MTH1214 MJ0694 MK0559 Ta1243m TVN0353 PH0053 PAB2305 PAE3232 SSO0939 APE2199 YLR197w YOR310c SPAC23G3.06 SPBC646.10c ECU04g0820 ECU09g1600 CLUSTER 2 YGR091w SPBC119.13c >COG1499 (Putative duplication confidence score 1.000) CLUSTER 1 AF1972 VNG2474C MA3869 MTH1768 MJ1650 MK0517 Ta0988 TVN0478 PH0990 PAB1716 PAE1653 SSO2383 APE0748 YHR170w SPAC16C9.03 ECU09g1380 CLUSTER 2 APE2334 >COG1503 (Putative duplication confidence score 1.000) CLUSTER 1 AF1220 VNG2131G MA0042 MA1008 MTH878 MJ0829 MK0759 Ta0534 TVN0588 PH1584 PAB0396 PAE2906 SSO2339 APE1988 YBR143c SPAC1834.01 ECU05g0360 aq_199 CLUSTER 2 VNG1842H MA1281 >COG1505 (Putative duplication confidence score 0.500) CLUSTER 1 PH1262 PAB0762 DR2503 Cgl0339 Rv0457c MT0473 all2533 NMB1877 NMA0579 mll1209 CC3687 CC3688 RC0215 CLUSTER 2 RP174 RC0216 RC0217 RC0218 >COG1517 (Putative duplication confidence score 1.000) CLUSTER 1 MJ1666 TVN0114 TVN0275 PH0168 PAE0117 SSO1389 SSO1711 SSO1787 SSO1788 aq_378 CLUSTER 2 PAE0119 PAE0121 >COG1524 (Putative duplication confidence score 0.667) CLUSTER 1 AF0247 Ta1349 TVN0258 PH1114 PAB2429 SSO2423 YCR026c_2 YEL016c SPBC725.05c TM0626 TM1581 CAC0477 Cgl2398 lin1457 BH1564 BH1955 all0415 PA3251 XF2599 Cj0729 SMb21538 mll5120 mll5889 mlr9275 CC1277 CC2461 CLUSTER 2 YJL062w YKL165c YLL031c SPAC13G6.03 SPBC27B12.06 SPBC839.08c ECU07g0310 >COG1529 (Putative duplication confidence score 0.667) CLUSTER 1 PAE1935 PAE2478 SSO1209 SSO2091 SSO2150 SSO2639 SSO2760 SSO2942 SSO3009 SSO3239 APE0708 APE2216 DRA0231 DRA0237 Rv0373c MT0388 BS_yurC BH0748 BH1977_1 yagR ygeS ygfN_2 Z4205 Z4220_2 ZyagR ECs0314 ECs3739 ECs3754_2 PA1933 PA4621 RSc1468 AGpA739 SMa2037 SMa2353 SMb20132 SMb20395 SMb21340 SMb21556 SMc03102 mll1128 mll2287 mll4880 mlr1703m mlr1927 mlr7702 TP0079 CLUSTER 2 aq_227 PA1601 PA1880 PA2378 RSc0627 RSc1889 RSp0325 SMa1488 SMb20342 SMb20404 SMb21339 mll3836 CC0021 CC2269 >COG1543 (Putative duplication confidence score 1.000) CLUSTER 1 PH0368 CLUSTER 2 PH1386 PAB1857 CAC2414 Rv3031 MT3115 ML1714 BH1415_1 sll0735 alr2450 TP0358 >COG1549 (Putative duplication confidence score 1.000) CLUSTER 1 AF0587 VNG1957G MA4632 MTH1665 MJ1022 MK1084 Ta0924 TVN1069 PH0135 PAB0082 SSO2201 CLUSTER 2 MA0927 >COG1553 (Putative duplication confidence score 0.600) CLUSTER 1 MA3926 MTH1357 MJ0989 MK0008 TM0981 ychN ZychN ECs1724 YPO3130 STM1769 PM0515 CLUSTER 2 yheN ZyheN ECs4196 YPO0197 STM3451 BU532 VC0356 PA2605 HI0576 PM1351 >COG1568 (Putative duplication confidence score 1.000) CLUSTER 1 AF1611 MJ1273 PH0728 PAB0872 aq_1754 CLUSTER 2 MJ0675 >COG1571 (Putative duplication confidence score 1.000) CLUSTER 1 AF2259 VNG2110C MA3525 MTH966 MJ1095 MK1003 Ta0545 TVN0599 PH1812 PAB0247 PAE0933 SSO0258 APE0656 CLUSTER 2 MA1981 MTH1391 MJ0921 MK0351 >COG1573 (Putative duplication confidence score 0.583) CLUSTER 1 AF2277 VNG0707C VNG1228C VNG2082G MA2265 MA3593 Ta0477 TVN0827 PH1472 PAB0474 PAE0651 PAE1327 SSO2275 SSO2733 APE0427 aq_1693 TM0511 FN0901 DR1751 CAC0219 CAC2997 Rv1259 MT1297.1 ML1105 sll1217 alr3018 NMB1873 NMA0583 RSc1369 HP0650 jhp0595 Cj0963 AGc1810 AGc3961 SMb21448 SMc02375 BMEI1299 BMEI1321 mll5147 mll7705 mll7751 CC1333 CC1549 CC2333 RP845 RC1309 TP0229 CLUSTER 2 FN1259 L68066 SPy0472 SP0624 VC0266 HI0220.2 RSc1329 AGc3461 SMc04210 BMEI1097 mll0558 CC2084 >COG1577 (Putative duplication confidence score 1.000) CLUSTER 1 AF2289 VNG1145G MA0602 MTH46 MJ1087 MK0993 PH1625 PAB0372 PAE3108 SSO0383 APE2439 YMR208w SPAC13G6.11c ECU09g1780 L7866 SPy0876 SP0381 SA0547 lin0010 BB0688 CLUSTER 2 L10014 SPy0878 SP0383 SA0549 lin0012 >COG1581 (Putative duplication confidence score 1.000) CLUSTER 1 AF1067 AF1956 MTH1483 MJ0212 MK0715 MK1089 Ta0912 TVN1058 PHS053 PAB7094 PAE2226 SSO0962 APE1823 APES060 CLUSTER 2 SSO6877 >COG1599 (Putative duplication confidence score 1.000) CLUSTER 1 AF0382 AF0780 VNG0133G VNG1255C VNG2160C MA0590 MA3019 MA4645 MTH1384 MTH1385 MJ1159 MK1441 Ta0387 Ta1149 TVN1185 TVN1236 PH1893 PAB2163 SSO2364 APE1323 YAR007c SPBC660.13c ECU01g0880 ECU10g0600 CLUSTER 2 VNG6403H VNG7134 >COG1615 (Putative duplication confidence score 1.000) CLUSTER 1 AF1421 CAC0010 Cgl0762 Rv0064 Rv3193c MT0070 MT3285 ML0644 sll1060 alr1037 CLUSTER 2 alr1036 >COG1621 (Putative duplication confidence score 1.000) CLUSTER 1 YIL162w SPAC8E11.01c SPCC191.11 TM1414 CAC0425 CAC1462 CAC1773 Cgl2591 SPy1816 SP1724 SP1795 SA1846 BS_sacA BS_sacC BS_yveB BH1858 Z3625 ECs3243 VCA0655 PM1848 RSp1284 AGc1721 CLUSTER 2 Cgl1092 >COG1632 (Putative duplication confidence score 1.000) CLUSTER 1 AF2319 VNG0177G MA1784 MTH690 MJ0983 MK0389 Ta1286m TVN0535 PH0978 PAB0575 PAE1833 SSO0742 APE1452 YLR029c YMR121c SPAC1783.08c SPCC576.11 ECU11g1380i CLUSTER 2 PAE1639_2 >COG1640 (Putative duplication confidence score 1.000) CLUSTER 1 PAE1209 aq_723 FN0858 DR1637 Cgl2245 Rv1781c MT1831 L93919 SPy1292 SP2107 sll1676 alr3871 malQ ZmalQ ECs4258 YPO0126 STM3513 VCA0014 PA2163 HI1356 PM0540 RSp0236 CT087 CPn0326 BB0166 CLUSTER 2 L94405 >COG1641 (Putative duplication confidence score 1.000) CLUSTER 1 AF2097 MA0429 MTH1109 MJ1387 MK0293 MK1105 TM0964 CAC0774 Cgl2418 slr1411 all0200 CLUSTER 2 MA0369 >COG1643 (Putative duplication confidence score 1.000) CLUSTER 1 YER013w_2 YGL120c YKL078w YKR086w YLR419w YMR128w YNR011c SPAC10F6.02c_2 SPAC145.03 SPAC2G11.11c SPAPB1A10.06c SPBC15C4.05 SPBC16H5.10c SPBC1711.17 SPBC19C2.01 SPCC895.09c ECU04g0250 ECU09g0150 ECU10g0680 ECU11g0860 DR0420 Cgl0142 Cgl1881 hrpA hrpB ZhrpA ZhrpB ECs0152 ECs2015 YPO2322 YPO3394 STM0189 STM1641 VC0601 VC1382 PA3297 PA3961 HI1070 PM0769 XF1229 XF1383 NMB2007 NMA0433 RSc1251 AGc86 SMc02586 BMEI1817 BMEI1818 mlr5306 CC1185 TP0526 BB0827 CLUSTER 2 NMB2011 NMA0430 >COG1653 (Putative duplication confidence score 1.000) CLUSTER 1 VNG6277G Ta0144 Ta0691_2 TVN0205 TVN1143 PH0025 PH0753 PH1039 PH1214 PAB2333 PAE0689 PAE1324 SSO0999 SSO2847 SSO3066_1 APE0035 APE1630 TM0432 TM0595 TM0810 TM1120 TM1235 TM1855 DR1438 CAC0429 CAC0662 CAC0664 CAC1456 CAC2912 CAC3672 Cgl0706 Cgl1352 Cgl2408 Rv1235 Rv2041c Rv2318 Rv2833c MT1273 MT2101 MT2381 MT2899 ML1086 ML1427 ML1770 L127223 SPy0252 SPy1591 SPy1592 SP0092 SP1683 SP1690 SP1796 SP1897 lin0220 lin0762 lin0852 lin1841 lin2115 lin2972 BS_araN BS_lplA BS_msmE BS_yesO BS_ytcQ BS_yurO BH0482 BH0796 BH0905 BH1064 BH1079 BH1117 BH1244 BH1864 BH1913 BH1924 BH2111 BH2226 BH2726 BH3680 BH3690 BH3845 slr0529 slr1865 slr1897 all1027 all1916 alr2722 alr4277 ugpB ycjN Z2474m ZugpB ECs1888 ECs1889 ECs4299 YPO0612 YPO1719 YPO1893 YPO2477 YPO3472 YPO3796 STM3557 VC1549 VCA1033 PA2338 PA3190 PM1762 XF2448 RSc1264 RSc2144 RSc3051 AGc1045 AGc2594 AGc4552 AGc4715 AGc529 AGc689 AGl1009 AGl1217 AGl1777 AGl1912 AGl2941 AGl2966 AGl3070 AGl3153 AGl3248 AGl3270 AGl3289 AGl3319 AGl3359 AGl3389 AGl3404 AGl3413 AGl3424 AGl3560 AGl456 AGl615 AGl841 AGpA114 AGpA115 AGpA379 AGpA587 AGpA676 AGpA77 SMa0709 SMa1337 SMa1364 SMa2305 SMb20231 SMb20325 SMb20416 SMb20538 SMb20634 SMb20660 SMb20971 SMb21090 SMb21103 SMb21151 SMb21221 SMb21461 SMb21595 SMb21604 SMb21652 SMc01496 SMc01628 SMc01977 SMc02471 SMc02514 SMc02873 SMc03061 SMc04135 SMc04259 SMc04396 BMEI1716 BMEII0115 BMEII0542 BMEII0590 BMEII0625 BMEII0754 BMEII0755 BMEII0945 mll0702 mll0854 mll1712 mll3319 mll3384 mll3503 mll3590 mll4149 mll4927 mll5113 mll5302 mll7154 mll7157 mlr2244 mlr2326 mlr3050 mlr3639 mlr4771 mlr4910 mlr6435 mlr6651 mlr7000 mlr7091 mlr7225 mlr7261 TP0074 TP0737 CLUSTER 2 mll8488 >COG1675 (Putative duplication confidence score 1.000) CLUSTER 1 AF0757 VNG0757G MA3871 MTH1669 MJ0777 MK0495 PH0619 PAB0950 PAE0781 SSO0266 APE2004 YKL028w SPAC458.07 ECU07g0220 CLUSTER 2 SPAPYUG7.01 >COG1724 (Putative duplication confidence score 0.600) CLUSTER 1 MA0765 MA4126 TM1312 ssr1766 asl1824 jhp0961 CLUSTER 2 MA2135 slr1999_1 asl2714 YPO1818 SMc04441 msr2149 CC3184 >COG1736 (Putative duplication confidence score 1.000) CLUSTER 1 AF1803 VNG0854C MA0718 MTH1319 MJ0483 MK1517 Ta0255 TVN1339 PH1105 PAB0746 PAE2994 SSO0293 APE0447 YIL103w YKL191w SPBC17D1.02 SPBC3B8.05 ECU07g0980 CLUSTER 2 ECU06g1330 >COG1739 (Putative duplication confidence score 0.500) CLUSTER 1 VNG2298a MA0784 SPBC14C8.09c TM1713 FN1907 DR2203 CAC2296 Cgl2074 L98095 SPy1617 SP2209 SA0703 lin2660 BS_yvyE BH3630 yigZ ZyigZ ECs4776 STM3985 VC2757 PA0168 HI0722 PM1497 NMB2153 NMA0240 RSc3277 HP1485 jhp1378 Cj0429c AGl1623 SMc01701 BMEII0420 BB0430 UU262 MYPU_2760 CLUSTER 2 YCR059c YDL177c SPAC27E2.02 >COG1749 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1859 CAC2154 lin0705 flgE ZflgE ECs1454 YPO0725 YPO1802 STM1177 BU340 VC2197 PA1080 RSp0345 HP0870 jhp0804 Cj0043 Cj1729c AGc1012 SMc03047 BMEII0159 mlr2937 CC0902 CC2839 TP0727 BB0283 CLUSTER 2 HP0908 jhp0844 >COG1757 (Putative duplication confidence score 0.500) CLUSTER 1 VNG0436G VNG2123G VNG6313G FN0352 FN0624 FN0650 FN0978 FN1414 FN1420 FN1422 FN1860 FN2077 CAC0744 SA2094 SA2117 BS_mleN BS_nhaC BH3946 YPO0624 STM1556 VC2037 VCA0193 HI1107 NMB0536 NMA0715 BB0637 BB0638 CLUSTER 2 VNG1985C VNG2124C PH1889 PAB2161 APE2538 CAP0140 BH3449 VC1131 VCA0213 HI1586 PM0871 NMB0531 NMA0709 HP0946 jhp0880 Cj0832c >COG1759 (Putative duplication confidence score 1.000) CLUSTER 1 AF0113 MA0206 MTH1201 MJ0136 MK0588 PH1348 PAB0547 PAE0608 SSO0239 CLUSTER 2 AF0256 MA3689 PH0324 PAB1272 PAE0604 SSO0241 >COG1760 (Putative duplication confidence score 1.000) CLUSTER 1 FN1106 DR0377 CAC0674 Cgl1607 Rv0069c MT0075 ML1755 L44083 SPy2190 SP0105 SA2318 lin1926 BS_ylpA BH2496 sdaA sdaB yhaP Z4464 ZsdaA ZsdaB ECs2523 ECs3657 ECs3992 YPO1771 STM1826 STM2196 STM2971 STM3240 VC1300 VCA0666 PA2443 PA5379 HI0288 PM0036 NMB0211 NMA0057 RSc1099 RSc1100 RSc3296 RSp0045 HP0132 jhp0120 Cj1624c AGc3229 SMc01256 BMEI0811 mll0670 CC3108 CLUSTER 2 DR0497 CAC0673 L43452 SPy2189 SP0106 SA2319 lin1927 BS_yloW BH2497 yhaQ >COG1766 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1182 TM0221 CAC2162 lin0721 BS_fliF BH2458 fliF ZfliF ECs2677 YPO0714 YPO1830 STM1969 BU073 VC2133 PA1101 RSp0390 HP0351 jhp0325 Cj0318 AGc922 SMc03014 BMEII0151 mlr2928 CC0905 TP0399 BB0291 CLUSTER 2 BMEII0152 >COG1773 (Putative duplication confidence score 1.000) CLUSTER 1 AF0341 AF0880 AF1349 MTH1453_1 MTH155 MTH156 MJ0735 MJ0740 PAB7224 TM0659 FN1424_3 CAC2778 Rv3250c Rv3251c MT3348 MT3349 slr2033 alr3843 asl4557 ygaK_2 Z4018_2 ECs3566_2 STM1533_2 STM2840_2 PA5350 PA5351 XF0379 NMB0993 NMA1201 RSc0667 CC2495 TP0991 CLUSTER 2 MJ0737 >COG1775 (Putative duplication confidence score 0.667) CLUSTER 1 AF1957 MJ0007 MK0258 FN0208 yjiM ZyjiM ECs5298 CLUSTER 2 AF1958 FN0207 CAC3622 >COG1788 (Putative duplication confidence score 0.500) CLUSTER 1 AF1199 SSO1083 FN0202 Rv3551 MT3655 PA0226 SMb20587 mll4183 CLUSTER 2 FN0272 FN1857 DRA0054_1 DRA0068 CAP0163 Cgl2339 Rv2504c MT2579 SPy0141 SPy1638 BS_yodS BS_yxjD BH2259 atoD PA1999 HI0774 RSc1570 RSc2254 HP0691 jhp0637 AGl1055GM BMEII0643 BMEII0644 CC0206 CC2405 RC0904 RC0905 >COG1794 (Putative duplication confidence score 0.667) CLUSTER 1 AF1422 PH1733 PAB2073 ygeA ZygeA ECs3697 YPO2758 STM3015 PM1626 RSc0212 Cj0085c AGl1549 AGl3474 SMc01404 mll4070 CC3278 CLUSTER 2 PH0670 PAB0912 L92665 BS_racX STM4510 CC2033 >COG1800 (Putative duplication confidence score 1.000) CLUSTER 1 AF0384 MJECL39 MJECS12m PH0672 CLUSTER 2 MJ1282 PH1321 >COG1804 (Putative duplication confidence score 1.000) CLUSTER 1 AF0020 AF0973 AF0974 AF0990 AF1315 TVN0908 TVN1161 PAE2467 SSO1343 SSO3144 DR1717 DRA0025 Rv0855 Rv1143 Rv1866 Rv3272 MT0878 MT1176 MT1915 MT3372 caiB yfdE yfdW Z3639 ZcaiB ZyfdEm ECs0041 ECs3250 ECs3251 ECs3254 STM0072 PA0446 PA0882 PA1188 PA3592 PA3733 RSc0796 RSc1197 RSc1375 RSp1421 AGc3858 SMb21089 SMb21182 BMEI0898 BMEII0224 BMEII1019 BMEII1076 mll1018 mll7158 mlr1614 mlr2316 mlr6096 CC1841 CC2325 CC3562 CLUSTER 2 RSc3367 >COG1816 (Putative duplication confidence score 1.000) CLUSTER 1 YBR284w YJL070c YML035c SPBC106.04 CLUSTER 2 YNL141w SPBC1198.02 SPBC1683.02 CAC3005 Rv3313c ML0700 L87453 all4418 add Zadd ECs2331 STM1463 VC2751 PA0148 RSc2098 AGc218 SMc04120 mll3163 CC3180 TP0045 >COG1820 (Putative duplication confidence score 1.000) CLUSTER 1 SSO2673 TM0814 FN1133 DRA0066 CAC0188 Cgl2593 Rv3332 MT3435 L173068 SPy1694 SP2056 SA0656 lin0955 lin2213 BS_nagA BH0421 all0988 agaA nagA Z4489 ZnagA ECs0707 ECs4015 YPO0838 YPO2626 STM0683 VC0994 VC1783 PA3758 HI0140 PM0874 XF1465 AGc4726 SMc02878 BMEII0385 mll4766 CC0443 CC0534 BB0151 MYPU_3690 CLUSTER 2 MYPU_3680 >COG1822 (Putative duplication confidence score 1.000) CLUSTER 1 MTH1461 MTH655 MJ0419 PH0088 PAB0054 CLUSTER 2 MJ0420 PH0089 PAB0055 >COG1830 (Putative duplication confidence score 0.571) CLUSTER 1 AF0108 AF0230 VNG0309C VNG0683C MA0439 MA2666 MA3889 MA4591 MTH579 MJ0400 MJ1585 MK1409 PH0082 PAB0049 SSO3226 APE0011 aq_1554 yneB ZyneB ECs2124 YPO0408 STM4078 PM1278 AGl1940 SMb20498 mlr7221 CLUSTER 2 all3735 fbaB Z3260 ECs2900 STM2141 CT215 CPn0281 >COG1840 (Putative duplication confidence score 0.600) CLUSTER 1 VNG0924G MA1229 MA1271 FN0128 FN0308 FN0375 Cgl0423 SPy1063 SP0243 SP1826 SA0217 BH0513 sll0237 slr0513 slr1295 alr1382 ZafuA ECs0415 YPO2958 YPO3050 STM0429 VC0608 VCA0603 VCA0685 PA2377 PA3250 PA4687 PA5217 HI0097 HI0131 PM0051 PM0203 PM0953 PM0954 PM0955 PM1457 XF0324 NMB0634 NMA0844 RSc1791 RSc2934 RSc2937 Cj0175c Cj0727 AGc346 AGc3652 AGc3890 AGc4480 AGc715 AGl196 AGl198 AGl591 SMa0522 SMa0523 SMb20157 SMb20158 SMb20365 SMb20723 SMb21540 SMc00784 SMc01605 SMc04317 BMEII0565 BMEII0584 BMEII1120 mll3069 mll3626 mlr3495 CLUSTER 2 PAE0061 PAE3657 APE1728 STM2398 VCA0706 PM1458 >COG1850 (Putative duplication confidence score 0.500) CLUSTER 1 AF1587 AF1638 MA4555 MJ1235 PH0939 PAB1580 BS_ykrW slr0009 alr1524 SMb20198 CLUSTER 2 SMb20393 mll7006 >COG1858 (Putative duplication confidence score 1.000) CLUSTER 1 MA2908 MA2925 aq_136 DRA0301 yhjA ZyhjA ECs4398 YPO3342 STM3820 VC0089 PA4587 PM0939 RSc2493 RSp0718 RSp1173 HP1461 jhp1354 Cj0020c Cj0358 AGc5068 mll1163 mlr1826 mlr5805 CLUSTER 2 PA3032 >COG1863 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0571C MA4568 MTH1251 MJ0953 PH0946 PH1427 PH1456 PAB0485 PAB0802 PAB1401 PAB1884 TM1205 DR0748a DR0884 Cgl2675 SA0582 SA0809 lin2481 BS_mnhE BH1315 VCA0154 PA1057 AGc1664 AGc898 SMc00055 SMc03182 BMEII0767 RP156 RC0199 CLUSTER 2 Cgl0267 >COG1875 (Putative duplication confidence score 1.000) CLUSTER 1 TM0495 Cgl0065 Rv1095 MT1127 ML1951 BS_ylaK BH2629 VC2507 PA3919 XF0959 RSc1316 CT015 CPn0106 CLUSTER 2 XF0960 >COG1882 (Putative duplication confidence score 0.667) CLUSTER 1 AF1449 MTH346 SPy2049 SP0251 pflD ybiW Z1046m ZpflD ECs0900 ECs0901 ECs4880 STM0843 STM4114 RSc1546_2 CLUSTER 2 FN0262 CAC0980 L57408 SPy1849 SP0459 SA0218 lin1443 lin2031 pflB tdcE ZpflB ZtdcE ECs0986 ECs3994 YPO1383 STM0973 STM3241 VC1866 HI0180 PM0075 >COG1884 (Putative duplication confidence score 1.000) CLUSTER 1 AF1288a AF2215 VNG0481G VNG0653G Ta0462 TVN0772 PH1306 PAB1800 SSO2425 APE1687 DR1084_1 DR1189 Cgl1492_1 Rv1493_1 MT1535 MT1540_1 ML1799_1 BH2955_1 BH3796_3 sbm_1 Zsbm_1 ECs3787_1 RSc0237_3 AGl2498_1 SMb20757_1 BMEI0799_1 mll7619_1 CC2374_1 CC3081_1 CLUSTER 2 Cgl1493_1 Rv1492_1 MT1539_1 ML1800_1 BH2956_1 mll7621 CC2373 >COG1886 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1539 TM0680a CAC2215_2 lin0701 lin0706 lin0708_2 BS_fliY_2 BH2445_2 fliN Z4190 ZfliN ECs2685 ECs3726 YPCD1.43 YPO0269 YPO0710 YPO1822 STM1418 STM1977 STM2891 BU081 VC2125 PA1444 PA1694 RSp0377 RSp0861 HP0584 HP1030_2 jhp0394_2 jhp0531 Cj0059c_2 Cj0351 AGc988 SMc03020 BMEII1112 mll2902 mlr6344 CC0908 CC2175 CT672 CPn0704 TP0720_2 BB0277 CLUSTER 2 ZsepQ ECs4565 >COG1900 (Putative duplication confidence score 1.000) CLUSTER 1 AF1186_1 MA1821_1 MTH855_1 MJ0100_1 MK0907_1 slr0689 all1701 CLUSTER 2 MA3299_1 MTH1684_1 MJ1681_1 MK0358_1 >COG1908 (Putative duplication confidence score 1.000) CLUSTER 1 AF0662_2 CLUSTER 2 AF1238_2 AF1374 MA2868_2 MTH1136 MTH1138 MJ1190a MK0268 MK0627 >COG1913 (Putative duplication confidence score 1.000) CLUSTER 1 AF0330 VNG2610C MJ0281 MK0548 PH1820 PAB2097 PAE1990 SSO0689 APE0147 aq_459 CLUSTER 2 PH1784 PAB2114 >COG1929 (Putative duplication confidence score 1.000) CLUSTER 1 CAC2834 Cgl1847 Cgl2028 Rv2205c MT2261 L79277 SPy1903 SP1126 SA2220 lin2965 BS_yxaA BH0555 slr1840 ybbZ yhaD ZybbZ ZyhaD ECs0576 ECs4002 YPO3980 STM0525 STM2492 STM2959 STM3247 VCA0903 PA1052 HI0091 PM1741 NMB1268 NMA1473 CLUSTER 2 SA0697 >COG1940 (Putative duplication confidence score 1.000) CLUSTER 1 AF1968 VNG2629G Ta0825 TVN0728 PAE3437 APE2091 aq_1496 TM0032 TM0110 TM0393 TM0411 TM0808 TM1224 TM1469 TM1847 FN0790 FN1164 FN1474 DR0823 DR2296 CAC0933 CAC1086 CAC1523 CAC2613 CAC3673 Cgl0009 Cgl0122 Cgl1864 Cgl2137 Cgl2595 Rv0485 Rv0650 Rv2702 MT0503 MT0679 MT2776 ML1023 L117718 L118696 L84096 SPy0258 SPy1529 SPy1596 SPy1811 SP0171 SP0473 SP0668 SP1324 SP1675 SP1721 SP2142 SA0041 SA0305 SA1377 lin0031 lin0217 lin0520 lin0770 lin0809 lin1376 lin2907 lin2928 BS_glcK BS_xylR BS_ydhR BH0700 BH0786 BH0797 BH1094 BH1425 BH2758 slr0329 all1371 all5002 alr1982 alsK mlc nagC nanK yajF ycfX yphH Zmlc ZnagC ZyajF ZycfX ZyhcI ZyphH ECs0444 ECs0706 ECs1497 ECs2300 ECs3416 ECs4095 YPO1629 YPO1891 YPO2036 YPO2268 YPO2625 YPO3020 YPO3211 STM0393 STM0682 STM1220 STM1488 STM3336 STM3681 VC0270 VC0993 VC1532 VC1782 VC2007 HI0144 HI0182 PM0642 PM0675 PM0683 PM1375 PM1712 AGc4728 AGc93 AGl1298 AGl2504 AGl3149 AGl3541 AGl455 AGl592 AGl609 AGl95 SMa2004 SMa2303 SMb20901 SMb21222 SMc02172 SMc02470 SMc02880 SMc03109 SMc03816 SMc03817 BMEII0106 BMEII0857_2 mll3638 mll7583 mll8569 mlr3412 mlr3714 mlr4209 mlr7234 CC1134 CC1792 CC2465 BB0693 BB0831 MYPU_2280 CLUSTER 2 SMb20465 >COG1941 (Putative duplication confidence score 0.750) CLUSTER 1 AF1373 MTH1135 MJ1191 MK0179 MK0267 PH1292 PAB0640 PAB1786 sll1224 alr0764 CLUSTER 2 MA0977 MTH1298 MJ0031 MJ0726 MK0538 MK0930 >COG1943 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0043H VNG0285C VNG2653C VNG6182H MA0257 MA3362 Ta0474 TVN0469 TVN0750 TVN0843 SSO1474 SSO9043 TM0048 TM0777 TM1832 FN1675 FN1677 DR0177 DR0667 DR0979 DR1382 DR1592 DR1652 DR1927 DR1932 DR2323 CAC3531 MT3204 SP1064 SP1622 BH0176 BH0269 BH1642 BH1895 BH2842 BH3233 BH3466 BH3478 all2167 all3371 alr1015 alr1685 alr4734 alr7009 alr7086 alr7149 alr8071 asl7246 yafM Z5815 ZyafM ECs0255 ECs3277 ECs5182 YPMT1.37c YPO0018 YPO0094 YPO0204 YPO0300 YPO0356 YPO0479 YPO0487 YPO0534 YPO0541 YPO0583 YPO0696 YPO0697 YPO0726 YPO0925 YPO1036 YPO1099 YPO1164 YPO1173 YPO1223 YPO1263 YPO1369 YPO1406 YPO1424 YPO1434 YPO1521 YPO1592 YPO1602 YPO1609 YPO1794 YPO2023 YPO2033 YPO2121 YPO2311 YPO2343 YPO2353 YPO2395 YPO2629 YPO2764 YPO2826 YPO2869 YPO2900 YPO2917 YPO2928 YPO2985 YPO2996 YPO3060 YPO3072 YPO3178 YPO3187 YPO3195 YPO3280 YPO3291 YPO3299 YPO3329 YPO3416 YPO3433 YPO3535 YPO3567 YPO3642 YPO3745 YPO3764 YPO3810 YPO3853 YPO3968 PSLT036 STM0946 STM1957 STM2471 STM3032 STM3479 STM4311 VC0870 VCA0202 VCA0275 VCA0493 PA1154 HI0217 HI0554 NMB1464 NMA0532 NMA1155 NMA1675 RSc2966 HP0414 HP0437 HP0988 HP0998 HP1008 HP1096 HP1535 jhp0827 mll6832 mll6834 mll6836 msl6830 msl6833 CC1445 CLUSTER 2 all4950 >COG1951 (Putative duplication confidence score 0.667) CLUSTER 1 AF1099 MA2497 MTH1735 MTH963 MJ1294 MK0085 PH1683 PAB2030 PAE2132 aq_1780 TM0540 CAC3091 BH0894_1 ttdA ZttdA ECs3944 STM0762 STM3355 VC1304_1 PA4333_1 XF1855_1 NMB1613_1 NMA1812_1 RSc1955_1 mlr6099_1 CLUSTER 2 fumA_1 fumB_1 Z0887_1 ZfumA_1 ZfumB_1 ECs0757_1 ECs2318_1 ECs5104_1 YPO3335_1 STM1468_1 STM4300_1 BMEI1016_1 >COG1971 (Putative duplication confidence score 1.000) CLUSTER 1 MA3749 MTH1812 FN1615 CAC0950 Cgl1434 BS_ywlD BH3770 yebN Z2864 ECs2531 YPO1754 STM1834 PA2910 XF2257 NMB0215 NMA0052 Cj0167c CLUSTER 2 CAC0130 CAC0325 BS_ytaF BH3151 >COG1972 (Putative duplication confidence score 0.714) CLUSTER 1 SPy1868 BS_yutK BH1446 all0378 yeiJ yeiM ZyeiJ ZyeiM ECs3053 ECs3056 YPO0435 VC1953 VC2352 VCA0179 HI0519 PM1292 HP1180 jhp1106 CC2089 CLUSTER 2 SA0302 SA0479 SA0600 BS_nupC BS_yxjA nupC ZnupC ECs3272 YPO2983 STM2409 >COG1997 (Putative duplication confidence score 1.000) CLUSTER 1 AF0057 VNG0239C MA1775 MTH681 MJ0593 MK0379 Ta1295 TVN0309 PHS057 PAB7067 PAE2202 SSO6418 APES054 YJR094w-a YPR043w SPBC800.04c SPBC83.02c ECU07g1005 CLUSTER 2 MA4142 >COG2003 (Putative duplication confidence score 1.000) CLUSTER 1 MA1979 aq_1610 TM1557 FN0909 CAC1241 L0306 SPy1118 SP1088 SA0053 SA1485 lin1584 BS_ysxA BH3032 sll0766 alr2351 radC yeeS yfjY ykfG Z1217 Z1657 ZradC ECs1403 ECs2803 ECs4513 YPO0049 STM3729 VC0217 VC0510 VC1786 PA5319 HI0952 PM1152 XF0148 NMB1038 NMA1448 RSc2444 RSc2620 AGc2959 SMc00299 BMEI0718 mlr0956 msr1029 RC1278 CLUSTER 2 RC1277 >COG2006 (Putative duplication confidence score 1.000) CLUSTER 1 AF1306 MA0628_1 MA1031_1 MTH772_1 TM0049_1 sll1697 alr3725 CLUSTER 2 AF2235 MA1433 >COG2007 (Putative duplication confidence score 1.000) CLUSTER 1 AF2152 VNG1668G MA0923 MTH207 MJ0673 MK1545 Ta1040 TVN0555 PH1103 PAB0749 PAE3331 SSO0164 APE0789 YBL072c YER102w SPAC2C4.16c SPAC521.05 ECU02g0880 CLUSTER 2 YER126c SPCP1E11.08 ECU11g0810 >COG2010 (Putative duplication confidence score 1.000) CLUSTER 1 AF0190_2 MA0167 DR0343_2 DR0429_2 DR2095_2 DRA0275 Cgl2143 Rv2194 MT2250 ML0881 BS_cccA BS_cccB BS_qcrC_2 BH1378 BH1674_2 BH3603 sll1245 sll1796 all0161 all1365 alr4251 asl0256 VC1439 PA0105_2 PA0509_1 PA0517 PA0519_1 PA0523 PA1552 PA1555 PA1600 PA1734 PA1983 PA2266 PA4571_1 PA4619 PA5248_1 NMB0717 NMB1723 NMA0925 NMA1977 RSc0362_2 RSc0772 RSc1279 RSc3154 RSp0989 RSp1503_2 HP0147 jhp0135 Cj1487c AGc1609 AGc2829 AGl954 SMa0118 SMa0617 SMa0769 SMa1099 SMa1104 SMa1113 SMa1170 SMa1213 SMa1276 SMb20174 SMb20402 SMc00086 SMc04048 BMEI1566 BMEII0999 mll6628 mll9632 mlr6414 mlr7639 CC1090 CC1404 CC1696 CC2792 CC2970 CLUSTER 2 DR0434 >COG2013 (Putative duplication confidence score 0.750) CLUSTER 1 AF0626 VNG1609C VNG2631H MA2615 MA4652 MTH747 Ta0740 TVN1405 PAB2205 SSO1755 APE2139 TM0367 DR0368 DR2216 CAC0556 CAC1537 CAC2738 L178908 SPy0238 slr1570 slr1571 slr1572 PA3696 mlr0194 CC1115 CLUSTER 2 VNG0533H MA1825 MK0909 DR0625 >COG2025 (Putative duplication confidence score 1.000) CLUSTER 1 AF0287 VNG2151G Ta0212 Ta0329 Ta0429_2 TVN1281 TVN1382 PAE0721 PAE3587 SSO2762 SSO2817_2 APE0135 APE2419 YPR004c SPAC27D7.06 TM1531 FN0785 FN1424_2 FN1533 DR0970 CAC2543_2 CAC2709 Cgl1202 Rv3028c MT3112 ML1711 BS_etfA BH3099 fixB ydiR ZfixB ZydiR ECs0045 ECs2405 STM0076 STM0856 STM1353 PA2951 PA5400 XF0253 NMB2154 NMA0241 RSc0924 RSp0060 AGl2462 SMa0819 SMa1389 SMc00728 BMEI0097 mll5861 mlr3488 CC0726 CLUSTER 2 ygcQ Z4079 Z4080 ECs3624 ECs3625 >COG2030 (Putative duplication confidence score 1.000) CLUSTER 1 AF0198 AF1124 AF1933 AF2313 VNG0626G VNG1349Cm VNG2290G SSO1154 SSO3136 YKL182w_3 YKR009c_2 SPAC926.09c_3 FN0816 DR1239 DR2381_2 DRA0199 Cgl0289 Cgl0813_3 Cgl2444_3 Rv0130 Rv0216 Rv0241c Rv0636 Rv2499c Rv2524c_3 Rv3389c Rv3538 MT0138 MT0226 MT0255 MT0665 MT2574 MT2600_3 MT3496 MT3642 ML1191_3 ML1909 ML2566 ML2627 SA0037 BS_ydeM maoC_2 YPO1927 STM3119 VCA0808 PA1018 PA3302 PA4015 PA4788 RSc2042 RSc2043 RSp1120 AGc4066 AGc4068 AGl1567 SMa0874 SMb20978 SMb21110 SMb21635_2 SMc02696 SMc02697 SMc03927 BMEI0477 BMEI0478 BMEII0328 mll1143 mll6685 mll7145 mll7159 mlr0905 mlr2698 mlr2699 mlr3097 msl6009m CC0704 CC0942 CC3498 CC3656 CLUSTER 2 RSc0535 >COG2031 (Putative duplication confidence score 1.000) CLUSTER 1 AF1538 APE2381m FN1858 Cgl1143 SPy0137 BH0358 atoE PA2002 HI0772 HP0693 jhp0635 CLUSTER 2 Cgl1142_2 >COG2036 (Putative duplication confidence score 1.000) CLUSTER 1 AF0337 AF1493 VNG0134G MA0672 MTH1696 MTH254 MTH821 MJ0168 MJ0932 MJ1258 MJ1647 MJECL29 MK0506 MK0743 MK1677 PHS046 PHS051 PAB3089 PAB3117 YBL021c SPAC23C11.08 SPBC800.13_2 ECU10g0260 CLUSTER 2 YBR009c YBR010w YKL049c YNL030w YNL031c SPAC1834.03c SPAC1834.04 SPBC1105.11c SPBC1105.12 SPBC1105.17 SPBC8D2.03c SPBC8D2.04 SPBPI060 SPBPI061 ECU03g1460 ECU09g0440 ECU09g0450 >COG2037 (Putative duplication confidence score 1.000) CLUSTER 1 AF2073 MTH403 MK0816 CLUSTER 2 AF2207 MA0010 MTH1259 MJ0318 MK0116 >COG2043 (Putative duplication confidence score 1.000) CLUSTER 1 AF0180 CLUSTER 2 AF0908 AF1313 AF2126 MA0089 MA0921 MA1972 MA4240 MTH1364 MTH1418 MTH469 MTH526 MJ0308 MK0575 >COG2048 (Putative duplication confidence score 1.000) CLUSTER 1 AF0271_2 AF1375 MA3126 MA4237 MTH1879 MJ0743 MJ0863 MK0572 SSO1135 SSO2358 aq_400 slr0201 all3341 Cj0439 CLUSTER 2 SSO1129 aq_392 aq_394 >COG2055 (Putative duplication confidence score 0.500) CLUSTER 1 MTH1205 MJ1425 MK0392 PH1277 PAB1791 CAC0566 Cgl0641 BS_yjmC ybiC ylbC ZybiC ZylbC ECs0579 ECs0879 STM0528 STM3081 PA1252 AGc268 AGl3209 AGl410 SMa0265 SMa1459 SMb20261 SMc02035 BMEII1005 mll5197 mlr9117 mlr9216 CLUSTER 2 yiaK STM3668 HI1031 PM1256 >COG2057 (Putative duplication confidence score 0.571) CLUSTER 1 SSO1085 FN0203 Rv3552 MT3656 PA0227 SMb20588 mll4181 CLUSTER 2 FN0273 FN1856 DRA0054_2 DRA0067 CAP0164 Cgl2338 Rv2503c MT2578 SPy0142 SPy1639 BS_yodR BS_yxjE BH2258 atoA PA2000 HI0773 RSc1571 RSc2253 HP0692 jhp0636 AGl642 BMEII0645 CC0207 CC2406 RC0906 >COG2064 (Putative duplication confidence score 1.000) CLUSTER 1 AF0658 AF0995 VNG0822C MA0233 MA3097 MA3976 MTH1703 MTH980 MJ0779 MJ0780 MJ1286 MK0705 MK0706 Ta0902 Ta0903 TVN1013 TVN1014 PH0653 PH0654 PAB1458 PAB1459 PAE0772 PAE2779 SSO0119 SSO2386 SSO2679 APE2206 APE2207 CAC1978 Cgl0303 Rv3657c YPO0688 PA4300 PM0847 RSc0650 RSp1083 AGc371 SMa1562 SMc02822 mll0893 mlr5604 mlr6486 CC2940 CLUSTER 2 MA3098 >COG2066 (Putative duplication confidence score 0.500) CLUSTER 1 FN1397 Cgl2430 BS_ybgJ BS_ylaM BH2627 BH2717 all2934 ybaS yneH ZybaS ZyneH ECs0538 ECs2131 YPO0949 YPO1939 STM1525 VC0454 PA1638 RSp1143 AGc3412 SMc00486 BMEII0907 BMEII0908 mlr0211 CC0276 CLUSTER 2 slr2079 all4774 >COG2070 (Putative duplication confidence score 1.000) CLUSTER 1 AF2173 YJR149w aq_159 TM0800 FN0174 FN0664 DR2545 CAC3576 CAC3580 Cgl0912 Rv0021c Rv1533 Rv1894c Rv2781c Rv3553 MT0024 MT1944 MT2851 MT3657 L28502 SPy1751 SP0419 SA0781 lin0810 lin2273 BS_yrpB BH0210 BH1205 BH2639 all3741 PA0660 PA1024 PA4202 XF0121 NMB1452 NMA1666 RSc0114 RSc0255 RSp0307 RSp0316 HP0773 jhp0710 Cj1270c AGc729 SMc02150 BMEII0460 CC1570 CC2372 CC2990 CC3379 CLUSTER 2 BS_pksE_2 all1642 alr5356 >COG2071 (Putative duplication confidence score 1.000) CLUSTER 1 SPBPB2B2.05 FN0218 FN0505 CAC1764 Rv2859c MT2927 ML1573 L120396 SPy1119 SP1089 SP2072 lin1909 ycjL ZycjL ECs1875 PA0297 Cj1417c AGl2905 SMc03943 BMEII0314 mll5165 mll8760 CC3133 RP404 RC0552 CLUSTER 2 RP713 >COG2073 (Putative duplication confidence score 1.000) CLUSTER 1 AF0725 VNG1554G MTH1408 MJ1144 MK1518 Ta0660_1 TVN0916_1 PAE0339 SSO2297 FN0952 CAC1370 lin1161 slr0969_1 all0453_1 all2747 STM2028 PA2903_1 PA2947 RSp0619 AGc5076 SMc04285 BMEI0700 BMEI0712_1 mlr1384 CLUSTER 2 SSO0129 >COG2075 (Putative duplication confidence score 1.000) CLUSTER 1 AF0766 VNG1159G MA1523 MTH257 MJ1201 MK1444 Ta1114 TVN0451 PH1495a PAB8165 PAE3345 SSO5478 APES070 YLR009w SPAC22E12.13c ECU02g0810 CLUSTER 2 YGL031c YGR148c SPAC6G9.09c SPCC330.14c ECU07g0930 >COG2076 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1886a MA1348 DR1004 DR1005 CAC3666 Rv3065 MT3150.1 ML1756 L124677 lin0846 lin0847 BS_ebrA BS_ebrB BS_ykkC BS_ykkD BS_yvaE BS_yvdR BS_yvdS BH0685 BH0686 BH0840 BH0841 all0285 emrE sugE ydgE ydgF Z1870 Z2593 Z2594 ZsugE ECs1614 ECs2305 ECs2306 ECs5129 YPO0355 YPO2068 YPO2069 YPO2333 STM1482 STM1483 STM1653 STM4338 VC1393 PA0786 PA1540 PA1541 PA1882 PA3265 PA4990 NMB0393 NMA2091 Cj0309c Cj0310c Cj1173 Cj1174 AGc4218 SMc01178 SMc01179 SMc01278 SMc01523 BMEI1045 mlr4864 CC3443 CLUSTER 2 mll9408 >COG2077 (Putative duplication confidence score 1.000) CLUSTER 1 aq_488 CAC3306 Cgl1062 Rv1932 MT1982 L101699 SP1651 SA1535 lin1625 BS_ytgI BH3194 tpx Ztpx ECs1903 YPO2342 STM1682 VC0824 PA2532 HI0751 PM0820 RSc2790 HP0390 jhp0991 Cj0779 MYPU_7080 CLUSTER 2 STM1667 >COG2081 (Putative duplication confidence score 1.000) CLUSTER 1 CAC1849 CAC3590 L56208 SPy1866 SP0741 SA1576 lin2032 BS_ytfP BH3279 sll0586 all4556 yhiN ZyhiN ECs4364 YPO3966 STM3588 VC0080 PA0559 HI0933 PM0031 RSc2218 AGc1070 SMc00763 BMEI0614 CC1477 CLUSTER 2 PA3949 RSc3158 AGl1622 SMb20319 BMEI0946 CC0638 >COG2082 (Putative duplication confidence score 1.000) CLUSTER 1 AF0724_2 VNG1567G MA4258 MTH227 MJ0930 MK1196 Ta0654 TVN0922 PAE0343_2 SSO2308_2 FN0970 CAC1376 Rv2065 MT2125 lin1156 sll0916 slr1467 all0456 all2544 STM2033 PA2905 RSp0623_2 AGc5081 SMc03192 BMEI0714 mlr1379 CLUSTER 2 sll0794_2 alr3162_2 >COG2084 (Putative duplication confidence score 0.500) CLUSTER 1 MA0614 Ta0161 TVN0231 PAE1145 PAE2977 SSO0974 SSO1560 APE0756 aq_038 DR0499 CAC3342 Rv0751c Rv0770 MT0771 MT0775 MT0794 L81616 lin1004 BS_yfjR BS_ykwC BH2634 slr0229 alr3358 ybbQ ygbJ yhaE yihU ZybbQ ZyhaE ZyihU ECs0570 ECs4003 ECs4805 YPO3648 STM0519 STM2918 STM3248 STM4023 VCA0007 PA0743 PA1500 PA1576 PA2199 PA3312 PA3569 HI1010 PM1366 NMB1584 NMA1773 RSc2429 RSc3283 RSp0649 jhp0585 AGc4961 AGl1448 AGl1542 AGl3303 AGpA234 SMa0237 SMa0516 SMb20668 SMb20679 SMb20710 SMb20751 SMc00133 SMc00274 SMc01572 BMEI0688 BMEI1024 BMEII1090 mlr0254 mlr0552 mlr1203 mlr1689 mlr2606 CC1354 CC1574 CLUSTER 2 MTH1747 SMc00501 >COG2086 (Putative duplication confidence score 1.000) CLUSTER 1 AF0286 VNG2150G Ta0211m Ta0328 Ta0429_1 TVN1280 TVN1383 PAE0722 PAE3586 SSO2763 SSO2817_1 APE0134 APE2418 YGR207c SPAC1805.02c TM1530 FN0784 FN1534 DR0971 CAC2544 CAC2710 Cgl1201 Rv3029c MT3113 ML1712 BS_etfB BH3100 fixA ydiQ ZfixA ZydiQ ECs0044 ECs2404 STM0075 STM0855 STM1354 PA2952 XF0254 NMB2155 NMA0242 RSc0923 AGl2463 SMa0822 SMa1391 SMc00729 BMEI0096 mll5862 mlr3487 CC0727 CLUSTER 2 ygcR ZygcR ECs3626 PA5401 RSp0061 >COG2087 (Putative duplication confidence score 1.000) CLUSTER 1 FN0913 DRA0020 CAC1383 Cgl2151 Rv0254c MT0267 lin1111 BH1590 slr0216 all3174 cobU ZcobU ECs2788 STM2018 VC1239 PA1278 RSc2391 AGc2839 SMc04305 BMEI0693 mll1308 CLUSTER 2 BH1594 >COG2091 (Putative duplication confidence score 1.000) CLUSTER 1 YGL154c SPAC17C9.02c CAC1329 CAC2006 SA0174 BS_sfpm BH1852 slr0495 all5359 yhhU Z4867 ECs4342 STM3583 HI0152 PM0116 XF1934 RSc1804_3 RSp0163 CLUSTER 2 yieE ZyieE ECs4649 STM3849 >COG2095 (Putative duplication confidence score 1.000) CLUSTER 1 AF2111 MA3411 MJ0972 MJ1677 MK1198 Ta0019 Ta1070 TVN0065 TVN0525 PH0214 PH0760 PAB0863 PAB2220 PAE0791 PAE0942 PAE0943 SSO0607 APE2497 aq_540 DR2343 BS_yvbG all2000 marC ychE yhgN ZychE ZydeB ZyhgN ECs1742 ECs2136 ECs4279 YPO2181 YPO2437 YPO3950 STM1521 STM1748 BU267 BU449 VC2035 PA4857 PA5205 PA5486 PM0044 PM1581 XF2666 NMB1354 NMA1566 RSc2813 RSc2949 Cj1111c AGc2781 SMa1096 SMc01232 BMEI0403 BMEI0883 mlr0740 CC0106 CC1662 CT852 CT853 CPn1010 CPn1011 TP0988 CLUSTER 2 STM3540 >COG2102 (Putative duplication confidence score 1.000) CLUSTER 1 AF0720 PH0375 PAB0415 PAE0374 APE2042 CLUSTER 2 AF1666 VNG0391C MA1374 MTH432 MJ0570 MK0644 Ta0525 TVN1001 PH1257 PAB0759 PAE2672 SSO0678 APE0421 YLR143w_1 SPBC577.12_1 ECU08g1840 >COG2110 (Putative duplication confidence score 1.000) CLUSTER 1 AF1521 MA1614 MK0950 Ta1105 TVN0719 PH1513 PAB0445 PAE1111 SSO2899 APE1648 YBR022w aq_987 TM0508_2 FN1951 DR2288 Rv1899c_2 MT1950_2 SPy1216_2 SA0314 lin2902 ymdB Z1679 ECs1423 STM1147 STM1868_1 STM2587 PA1746 PA3693 RSc0334 mll3540 mll7730 CLUSTER 2 Rv0060 MT0066 >COG2111 (Putative duplication confidence score 0.800) CLUSTER 1 VNG0564H MA4665 MTH1243 MJ1307 PH0942 PH1429 PH1454 PAB0805 PAB1399 PAB1886 PAB2415 TM1110 TM1209 DR0881 SA0579 SA0812 lin2478 BS_yufU BH1318 slr2012 all1837 VCA0157_2 AGc1660 SMc00052 RP267_2 RC0355_2 CLUSTER 2 VNG0566C MA4572_2 MTH1244 PH0943 PAB0804 DR0880_2 Cgl0270_2 Cgl2672_2 SA0578_2 SA0813_2 lin2477_2 BS_shaA_2 BH1319_2 PA1054_2 AGc1658_2 AGc903_2 SMc00051_2 SMc03179_2 BMEII0770_2 >COG2113 (Putative duplication confidence score 0.500) CLUSTER 1 MA2147 L72477_2 SPy0184_2 pli0045 proX ZproX ECs3542 YPO2645 STM2811 PA0030 PA3236 PA5096 PA5103 PA5378 PA5388 RSp0064 AGc1631 AGc3730 AGc4148 AGl1618 AGl1793 AGl2067 AGl470 AGpA305 SMa1729 SMb20410 SMb21572 SMc00672 SMc02378 SMc02737 SMc04311 SMc04341 BMEI0441 BMEII0550 mll2746 mll7332 mlr1996 BB0144 CLUSTER 2 lin1015 BS_opuAC >COG2116 (Putative duplication confidence score 0.800) CLUSTER 1 MK0314 YHL008c FN1141 CAC1512 L195318 SPy1424 SP1215 SA0293 SA2191 lin0602 lin0912 BS_yrhG BS_ywcJ focA focB nirCm ZfocA ZfocB ZnirCm ECs0987 ECs3354 ECs4218 YPO0159 YPO1384 STM0974 STM3476 VC1695 VCA0540_1 HI0181 PM0074 CLUSTER 2 yfdC ZyfdC ECs3230 STM2393 PA2777 >COG2123 (Putative duplication confidence score 1.000) CLUSTER 1 AF0494 MA1776 MTH682 MK0380 Ta1294m TVN0308 PH1548 PAB0421 PAE2206 SSO0732 APE1445 YDR280w SPBC17D1.03c SPCC757.08 ECU06g0390 CLUSTER 2 YDL111c SPBC16G5.10 >COG2130 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0815G YML131w SPAPB24D3.08c SA1989 BS_yfmJ all1188 yncB ZyncB ECs2053 STM1589 PA1648 PA2197 RSc1766 mlr6843 CC2016 CLUSTER 2 all5008 >COG2144 (Putative duplication confidence score 1.000) CLUSTER 1 MA4193 MTH1864 MJ0640 MK0795 sll0787 CLUSTER 2 MJ0799 MK0889 MK1558 >COG2148 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0011C TM0632 FN1695 DRA0034 CAC2330 CAC3059 CAC3073 Cgl0348 SP0350 SP1838 SA0124 SA0156 BS_tuaA BS_yvfC BH3650 BH3716 sll1535 slr0820 all2285_2 all2854 all4160_2 all4420 all4719 all4829 alr4823 wcaJ ZwcaJ ECs2852 STM2082 STM2103 VC0263 VC0934 PA2231 HI0872 PM1011 XF2367 NMB1820_1 NMA0639_1 RSp1008 Cj1124c AGc157 AGc2280 AGl2989 SMb20946 SMb21071 SMb21246 SMc01792 BMEI1177 mll5252 mll8435 mlr6766 mlr7570 CC0166 CC1486 CC2384 CC2425 CLUSTER 2 alr2834 >COG2150 (Putative duplication confidence score 1.000) CLUSTER 1 AF1020 VNG2296C MA1396 MTH1654 Ta1106 TVN0456 PH1554 PAB2435 CLUSTER 2 Ta0033 TVN0041 PH0306 PAB1089 >COG2163 (Putative duplication confidence score 1.000) CLUSTER 1 MTH31 MJ0657 MK0833 PH1265a PAB7290 PAE0862 SSO5763 APE0976 YHL001w YKL006w YLR448w YML073c SPAC1805.13 SPCC622.18 ECU04g0330 ECU08g1780 CAC3110 BH0157 CLUSTER 2 YDR471w YHR010w SPBC685.07c SPCC74.05 >COG2172 (Putative duplication confidence score 1.000) CLUSTER 1 TM0733 TM1354_2 DRB0026 DRB0027_1 DRB0028_1 CAC2307 Rv1364c_3 MT1410_3 SA1870 lin0890 lin0893 BS_rsbT BS_rsbW BS_spoIIAB BH0525 BH0528 BH1537 sll1968 slr1861 all1702 all2284 alr3423 alr3655 alr3760 CT549 CPn0670 CLUSTER 2 Rv3287c MT3386 >COG2181 (Putative duplication confidence score 1.000) CLUSTER 1 AF0501 AF0546 PAE2614 Cgl1160 Rv1164 Rv1736c_3 MT1201 MT1778_3 SA2182 BS_narI narI narV ZnarI ZnarV ECs1732 ECs2068 STM1580 STM1761 PA3872 RSp0977 BMEII0953 CLUSTER 2 AF0545 >COG2185 (Putative duplication confidence score 1.000) CLUSTER 1 AF1288b AF2219 VNG0673G VNG2286G Ta0463 TVN0773 PH0275 PAB2187 SSO2266 APE1686 FN1853 DR1084_2 DR2032 Cgl1492_2 Rv1493_2 MT1540_2 ML1799_2 BH2955_2 BH3796_1 sbm_2 Z0895 Zsbm_2 ECs0764 ECs3787_2 RSc0237_1 AGl2498_2 SMb20757_2 BMEI0799_2 mll7619_2 CC2374_2 CC3081_2 CLUSTER 2 Cgl1493_2 Rv1492_2 MT1539_2 ML1800_2 BH2956_2 >COG2191 (Putative duplication confidence score 1.000) CLUSTER 1 AF0177 AF0433_2 MA0381 MA4602 MTH1345 Ta1109 TVN0676 PH1238 PAB0675 DRA0267 CLUSTER 2 MA0304 MTH917 >COG2192 (Putative duplication confidence score 1.000) CLUSTER 1 MJ1051 MJ1058 MK0097 PH1253 PAB1612 DRC0037 sll1178 PA2069 PA5005 RSp0788 RSp1491 SMb20472 mlr6171 CLUSTER 2 RSp1487 >COG2193 (Putative duplication confidence score 0.500) CLUSTER 1 Rv1876 MT1925 ML2038 sll1341 slr1890 bfr Z4695 ECs4189 YPO0206 STM3443 VC0365 PA3531 PA4235 XF0395 NMB1206 NMB1207 NMA1376 NMA1377 RSc0350 AGc5028 SMc03786 BMEII0704 mlr5526 CC3262 CLUSTER 2 all3940 PA4880 >COG2198 (Putative duplication confidence score 1.000) CLUSTER 1 YDL235c SPBC725.02 sll0043_1 sll1905_6 slr0073_1 slr1759_7 slr2098_6 slr2104_5 all2875_6 all5174_2 alr2279_5 alr2428_2 alr3761_7 arcB_3 barA_4 evgS_4 torS_3 ZarcB_3 ZbarA_4 ZevgS_4 ZtorS_3 ECs1148_3 ECs3249_4 ECs3646_4 ECs4089_3 YPO3381_4 YPO3555_3 STM2958_4 STM3328_3 STM3826_3 VC1080 VC1349_5 VC1653_4 VC2038_2 VC2369_3 VC2453_4 VCA0709_3 PA0033 PA0928_4 PA0991 PA3044_5 PA3345 PA3946_5 PA4112_5 HI0219a_2 HI1651 PM0313_3 mll6695 CLUSTER 2 yojN_2 ZyojN_2 ECs3105_2 STM2269_2 >COG2201 (Putative duplication confidence score 0.500) CLUSTER 1 AF1041 VNG0973G MA0015 MA1989_1 MA3067 MA3542_1 PH0483 PAB1331 TM0408 CAC2222 BS_cheB BH2435 all1716_1 all1847 cheB ZcheB ECs2593 YPO1679 STM1917 VC1401 VC2062 PA0173 PA1459 PA3703 RSp1403 Cj0924c AGc916 SMa1561 SMb20514 SMb20515_1 SMc03010 mll9510 CC0436 CC0597 TP0631 BB0415 BB0568 CLUSTER 2 PA0414 XF1951 >COG2213 (Putative duplication confidence score 0.500) CLUSTER 1 CAC0154 SP0394 SA1960 lin2931 BS_mtlA_1 BH3854 cmtA mtlA_1 ZcmtA ZmtlA_1 ECs3808 ECs4475_1 YPO4068_1 STM3685_1 BU572_1 VCA1045_1 PM1061_1 MYPU_7520 CLUSTER 2 MYPU_7510 MPN651 >COG2218 (Putative duplication confidence score 1.000) CLUSTER 1 AF1931 MA0307 MA0832 MA4176 MTH1558 MTH918_1 MJ1171 MK1530 CLUSTER 2 MTH238 MJ0658 >COG2224 (Putative duplication confidence score 0.500) CLUSTER 1 SSO1333 YER065c YPR006c SPBC1683.11c DR0828 Cgl2279 Rv0467 Rv1915 MT0483 MT1966 BH2677 aceA ZaceA ECs4933 YPO3725 STM4184 VC0736 PA2634 RSc1358 AGc1079 SMc00768 BMEI0409 mll6527 CC1764 CLUSTER 2 Rv1916 ML1985 >COG2226 (Putative duplication confidence score 1.000) CLUSTER 1 MA2333 MA2408 MA3655 MA4347 Ta0801 TVN1030 PAE2338 SSO1808 YML110c SPCC4G3.04c aq_338 TM0753 FN1543 DR2405 Cgl0464 Rv0558 MT0584 ML2273 SA1303 lin2045 BS_gerCB BH1649 sll1653 slr0407 all0538 alr5252 ubiE ZubiE ECs4763 YPO3781 STM3970 VC0083 PA5063 PM1686 XF1487 NMB0743 NMA0956 RSc0458 HP1483 jhp1376 Cj0324 AGc559 SMc01155 BMEII0233 mlr3165 CC3708 RP680 RC1037 CT428 CPn0515 CLUSTER 2 SMb20449 mll6702 >COG2233 (Putative duplication confidence score 1.000) CLUSTER 1 PAB1838 SPAC1399.01c TM0819 FN0888 DR2280 DRA0176 CAC0872 CAC2112 Cgl1894 Cgl2307_1 L160092 L46118 SPy0831 SPy1137 SP1286 SP1848 SA0374 SA1042 lin1953 lin1997 BS_pbuX BS_pyrP BS_yunJ BS_yunK BH2540 uraA ycdG ygfO ygfU yicE ZuraA ZycdG ZygfO ZygfU ZyicE ECs1252 ECs3359 ECs3755 ECs3760 ECs4530 YPO0034 STM2497 STM3631 STM3747 VC2171 VC2712 PA0166 PA0352 PA1507 PA2938 PA4647 HI1227 PM0018 NMB0930 NMB1315 NMA1126 NMA1528 RSc2118 AGl3468 SMb20134 SMb20289 SMc02512 SMc02513 BMEII0825 CLUSTER 2 BS_ywdJ ybbY ZybbY ECs0575 STM0524 >COG2239 (Putative duplication confidence score 1.000) CLUSTER 1 MTH620 TM1161 FN1480 CAC0684 Cgl0225 Rv0362 MT0378 SA0867 BS_ykoK BH0511 BH1947 BH1948 BH3224 slr1216 all1682 all5184 YPO2839 VC1655 VC2534 VCA0818 PA0913 XF1400 XF1401 NMB1999 NMA0442 AGc1836 AGc2851 SMc01261 BMEII0418 mll1318 mlr0521 CC2174 RP583 RC0886 CT194 CPn0286 TP0917 BB0380 UU009 MYPU_4080 CLUSTER 2 Cgl1101 Rv1232c MT1270 >COG2243 (Putative duplication confidence score 1.000) CLUSTER 1 AF0727 VNG1551G MA4262 MTH1348 MJ0771 MK1038 Ta0658 TVN0918 PAE0348 SSO2301 FN0959 CAC1379 Rv2066_1 MT2126_1 lin1166 slr1879 all0455 STM2024 PA2904 RSp0621 AGc5080 SMc03191 BMEI0713 mlr1380 CLUSTER 2 SMc03194 mlr1461 >COG2247 (Putative duplication confidence score 0.667) CLUSTER 1 MJ0755 PH1673 PH1674 PAB0336 PAB0337 CLUSTER 2 PH0614_1 PAB0953_1 BS_lytB_1 BS_lytC_1 >COG2249 (Putative duplication confidence score 0.571) CLUSTER 1 MA0147 MA0326 FN1233 CAC0018 lin1898 lin1903 BS_ydeQ BS_yrkL BS_ywrO BH2748 BH3885 yabF ycaK yheR ZyabF ZyheR ECs0049 ECs4202 YPO0190 STM0085 STM3458 VC2607 PA0853 PA1224 PA1225 PA4975 HI1544 PM0887 RSc3097 SMa0346 SMa1168 SMc00379 SMc03185 mll1286 mll1288 mll6586 mll7814 CC0205 CC0277 UU380 CLUSTER 2 SPAC5H10.05c mdaB ZmdaB ECs3910 YPO0670 STM3179 PA2580 HI0648 NMB0977 NMB1857 NMA0600 NMA1174 RSc2329 HP0630 jhp0573 Cj1545c >COG2262 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1275Gm VNG2611G MA3622 MJ1126 MK0456 PH1132 PAB0722 PAE0782 SSO0269 APE2007 aq_1908 TM0527 FN0823 DR0139 CAC2299 Cgl1895 Rv2725c MT2797 ML0997 L0162 SPy0922 SP0672 SA1147 lin0756 lin1334 BS_ynbA BH2362 slr1521 all3862 hflX ZhflX ECs5149 YPO0374 STM4362 VC0348 PA4943 PM0907 XF0088 NMB1041 NMA1445 RSc1221 AGc2676 SMc01049 BMEI0873 mlr0403 CC1746 CT379 CPn0478 CLUSTER 2 AGc2675 >COG2263 (Putative duplication confidence score 1.000) CLUSTER 1 AF0205 VNG0857Cm MA0719 MTH1918 MJ0284 MK0062 Ta1320 TVN0270 PH1948 PAB1205 PAE0261 SSO2158 APE0446 ECU08g1860 CLUSTER 2 MK1438 >COG2264 (Putative duplication confidence score 1.000) CLUSTER 1 aq_2102 TM1079 FN1608 DR1521 CAC1284 L104221 SPy1988 SP1782 SA1407 lin1508 BS_yqeT BH1349 sll1909 alr1419 alr1891 prmA ZprmA ECs4131 YPO3656 STM3383 VC0293 PA4850 HI0978 PM1088 XF2201 NMB1862 NMA0595 RSc2788 HP1068 jhp0357 Cj1117c AGc3754 SMc01472 BMEI0592 mlr1533 CC1526 CLUSTER 2 SMa0773 >COG2267 (Putative duplication confidence score 1.000) CLUSTER 1 AF1753 PAB1050 YKL094w SPCC5E4.05c TM1350 FN1306_1 DR1537 DR2522 CAC2246 Cgl1956 Cgl2514 Rv0183 Rv2854 MT0192 MT2921 ML2603 L7563 SA1143 SA1584 lin1226 BS_ytpA BH0879 BH3288 alr0851 pldB ynbC_1 Z2317_1 ZpldB ECs2012_1 ECs4755 YPO2814_1 YPO3830 YPO4014 STM3961 VC0135 PA0308 PA2540_1 PA3301 HI0645 PM1631 RSc2319 RSc3346 AGc3857 AGl1924 SMc02818 SMc04041 BMEI0552 BMEII0047 mlr1612 mlr3034 CC1734 CC2083 CC2253 CLUSTER 2 CC3441 >COG2268 (Putative duplication confidence score 0.500) CLUSTER 1 Cgl0631 L145739 BS_yuaG BH3500 sll1021 alr4526 alr4528 yqiK Z4403 ECs3933 STM3199 PA3729 CLUSTER 2 all0966 mll0592 >COG2272 (Putative duplication confidence score 1.000) CLUSTER 1 SPCC417.12 DR0415 DR2626 CAP0050 Cgl1109 Cgl2249 Rv1104 Rv2045c MT2105 SA2240 BS_pnbA STM1623 RSc2593 CC0799 CLUSTER 2 Rv1105 >COG2273 (Putative duplication confidence score 0.571) CLUSTER 1 YEL040w YGR189c YLR213c CAC2807 BS_bglS BH3231 BH3232 AGl1600 SMb20955 mlr5264 CLUSTER 2 YGR143w YPR159w SPAC17G6.11c SPAC23H3.11c TM0024 Rv0315 MT0329 AGl2532_2 SMa1587_2 SMb20932_2 mll2585_2 CC0380 >COG2301 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0627G SSO1254 APE0311 FN1379 DR1240 DR2206 Cgl0839 Rv2498c Rv3075c MT2573 MT3160 L0040 SPy1188 citE ZcitE ECs0655 YPO1928 STM0060 STM0622 STM0854 STM3120 VC0798 PA0883 HI0023 RSc1999 AGc5061 SMc01014 SMc03793 BMEII0413 BMEII1074 mll6008 mlr0906 mlr1323 mlr4422 CC2999 CC3659 CLUSTER 2 DR2219 Z1166 Z1605 ECs1345 YPO0289 >COG2307 (Putative duplication confidence score 1.000) CLUSTER 1 DR2041 Rv2410c MT2483 ML0606 sll1039 PA1731 RSc1122 AGc4249 SMb20887 mll0716 CC1601 CLUSTER 2 Rv2567_2 MT2643_2 ML2679_2 PA4927_2 AGl1958_2 SMc04057_2 mll2876_2 >COG2308 (Putative duplication confidence score 1.000) CLUSTER 1 SSO1308 DR2042 Rv2411c MT2484 ML0605 sll0335 PA1730 RSc1121 AGc4248 SMb20886 mll0717 CC1602 CLUSTER 2 Rv2567_1 MT2643_1 ML2679_1 PA4927_1 AGl1958_1 SMc04057_1 mll2876_1 >COG2310 (Putative duplication confidence score 1.000) CLUSTER 1 DR2217_1 DR2223_1 DRA0057_1 ZterA.2_1 ZterA_1 ZterF ZterF.2 ECs1352_1 ECs1358 YPO0295_1 CLUSTER 2 DR2217_2 DR2221 DR2224 DR2225 CAC1412 CAC1414 BS_yceC BS_yceD BS_yceE slr1764 ZterD ZterD.2 ZterE ZterE.2 ZterZ ZterZ.2 ECs1351 ECs1355 ECs1356 YPO0294 YPO0298 YPO0299 YPO0596 >COG2321 (Putative duplication confidence score 1.000) CLUSTER 1 DR2596 Cgl1598 Rv2575 MT2651 SPy0775 ypfJ Z3734 ECs3337 YPO3058 STM2486 PA4717 PM1973 RSc2503 AGc3948 SMc01213 BMEI0525 mll2493 CLUSTER 2 Rv0419 MT0433 >COG2358 (Putative duplication confidence score 1.000) CLUSTER 1 AF0467 AF0635 VNG0540G APE2136 DR1649 BH0601 BH2937 BH2947 sll1037 VC0430 VCA0144 PA3848 PA5545 PM0472 PM1578 SMb20292 BMEI0796 RP197 RC0259 CLUSTER 2 AF0988 APE2545 >COG2376 (Putative duplication confidence score 1.000) CLUSTER 1 YFL053w YML070w SPAC22A12.11 SPAC977.16c FN1840 DRB0053 L44063 L45677 SA0605 lin0366 lin2843 BH3393 BH3397 ycgT Z1971 ECs1705 YPO3350 PM1649 AGl2580 SMb20312_2 SMb20314 SMb20767 BMEI0396 BMEI0398_2 mll5289 mll5296 mll7280 mlr9018 CLUSTER 2 FN1841 L46694 SA0606 lin0365 lin2844 BH3396 ycgS Z1970 ECs1704 YPO3349 PM1648 SMb20307 SMb20313 BMEI0397 BMEI0399 mll5295 mll7278 >COG2390 (Putative duplication confidence score 0.600) CLUSTER 1 DR1935 L0037 SPy2053 SP0247 lin0551 lin2104 BS_deoR BH0780 ydeW yjhU Z5619 ZydeW ECs2119 ECs5004 YPO1810 YPO2324 YPO3310 YPO3348 STM4073 VCA0621 PM1273 PM1646 RSc2127 AGc3494 AGl1935 AGl814 AGl843 SMb20312_1 SMb20501 SMb20619 SMb20851 SMb21021 SMc01495 SMc01629 SMc03123 BMEI0398_1 BMEII0427 mll3409 mll3605 mll4931 mll7290 mlr7259 CLUSTER 2 CAC0708 SA0726 lin2554 BS_yvbQ BH3561 >COG2401 (Putative duplication confidence score 1.000) CLUSTER 1 AF1064 MK0520 PH1507 PAB1929 APE2272 YPMT1.27c CLUSTER 2 YPMT1.26c >COG2405 (Putative duplication confidence score 1.000) CLUSTER 1 AF0099 CLUSTER 2 AF0598 APE0276 APE0890 sll0658 all2804 >COG2413 (Putative duplication confidence score 1.000) CLUSTER 1 AF1979 MK0982 PH0007 PAB0004 SSO0086 APE0213 CLUSTER 2 MK1464 >COG2414 (Putative duplication confidence score 0.750) CLUSTER 1 AF0023 AF0077 AF0340 AF2281 MA1714 MA2962 MA3989 Ta0810 Ta0834 Ta1142 TVN0795 TVN1239 PH0028 PH0891 PH0892 PH1019 PH1274 PAB0647 PAB0798 PAB2085 PAB2330 PAE0622 PAE2052 PAE3427 APE0266 CAC2018 ydhV Z2701 ECs2380 CLUSTER 2 MJ1185 PH0457 PAB1315 PAE1029 >COG2461 (Putative duplication confidence score 1.000) CLUSTER 1 AF0170 PAB1709 TM1002 TM1004 FN1655 CAC1531 L52568 SP0562 BH0228 CLUSTER 2 SP1472_2 >COG2514 (Putative duplication confidence score 1.000) CLUSTER 1 PAE2685 APE2519 DR1764 Cgl2035 SPy2103 SP0073 SA1037 SA2310 lin0649 BS_yfiE BH3305 AGc1468 AGc1648 SMc00115 BMEI1118 mlr0078 CLUSTER 2 BH2142 >COG2602 (Putative duplication confidence score 1.000) CLUSTER 1 SA0039_2 SAP011_2 BS_ybxI slr0319 all2480 PA5514 RSp0030 Cj0299 AGc1700 mll0916 RC1244 CLUSTER 2 RC1243 >COG2603 (Putative duplication confidence score 1.000) CLUSTER 1 MJ0052 ybbB ZybbB ECs0564 STM0513 PA1643 Cj0500 CLUSTER 2 MJ0053 >COG2604 (Putative duplication confidence score 1.000) CLUSTER 1 CAC2168 CAC2196 CAC2200 CAC2202 HP0114 jhp0106 Cj1318 Cj1333 Cj1334 Cj1335 Cj1336 Cj1337 Cj1340c Cj1341c TP0175 CLUSTER 2 HP0465 jhp0417 >COG2605 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0344m TVN0888 CAC3055 Rv0115 MT0123 slr0862 Cj1425c CLUSTER 2 Ta1304 TVN0504 >COG2610 (Putative duplication confidence score 1.000) CLUSTER 1 MA0021 FN0225 FN0554 FN0815 CAC3605 Cgl2846 SPy1641 SA2293 BS_gntP BS_yojA BS_yxjC BH0805 BH3897 dsdX gntP gntT gntU idnT ygbN yjhF Z3627 ZgntP ZgntT ZgntU ECs4257 ECs4285 ECs5280 YPO0767 YPO3954 STM0860 STM2913 STM3512 STM3541 STM3801 STM4482 VC0286 VCA0904 PA1051 PA2004 PA2322 HI1015 PM0793 PM1359 PM1740 NMB2027 NMA0413 RSc2518 RSp1189 CLUSTER 2 CAC2835 YPO3979 HI0092 >COG2704 (Putative duplication confidence score 0.667) CLUSTER 1 CAC3500 dcuB ZdcuB ECs5105 STM3599 STM4301 VCA0205 HI0153 HI0746 PM1434 PM1918 Cj0671 CLUSTER 2 dcuA ZdcuA ECs5119 YPO0347 STM4325 VC2699 HP0724 jhp0660 Cj0088 >COG2716 (Putative duplication confidence score 0.667) CLUSTER 1 gcvR ZgcvR ECs3341 YPO3063 STM2490 VC2159 PA1009 XF0962 CLUSTER 2 VC1249 PA0484 CC3046 >COG2721 (Putative duplication confidence score 1.000) CLUSTER 1 Ta1392 SSO1260 STM0649 Cj0482 CLUSTER 2 Ta1393 SSO1259 CAC0696 BS_ycbH BS_yjmJ BH0490 uxaA yhaG ZuxaA ZyhaG ECs3973 ECs4006 YPO0581 STM0650 STM3250 RSp0830 RSp1615 Cj0483 AGc5115 AGl2029 SMc02776 BMEII0485 mlr3330 CC1488 >COG2731 (Putative duplication confidence score 1.000) CLUSTER 1 FN1134 CAC0836 SP1327 SP1680 SP1691 yhcH yiaL yjgK ZyhcH ZyjgK ECs4094 ECs5229 YPO2541 YPO3019 YPO3447 STM3080 STM3335 STM3669 STM4468 VC1555 HI0227 PM1255 PM1713 HP1029 jhp0395 MYPU_6600 CLUSTER 2 ebgC ZebgC ECs3959 >COG2761 (Putative duplication confidence score 0.500) CLUSTER 1 VNG0170Cm SSO1074 DR0659 CAC3447 Cgl2513 BS_ywbO BH1902 VCA0178 XF2135 RSp0909 AGc3262 AGpA16 SMc00952 BMEII0690 mlr0515 CC1843 CLUSTER 2 SA0860 lin0963 BS_yjbH BH2855 >COG2770 (Putative duplication confidence score 0.667) CLUSTER 1 AF1503_2 AF1620_2 aq_1825 DR1829_2 BS_resE_2 slr0829_1 slr1860_2 all2260 alr1121_1 alr1883_2 VC2750_2 PA0172_2 RSp0012_1 RSp0253_1 RSp0254_1 AGl3494_1 SMb20450_2 mll2385_1 mll6700_2 CLUSTER 2 MA1739_2 MA2555_2 VC1295_2 PA0847_2 >COG2801 (Putative duplication confidence score 1.000) CLUSTER 1 AF0309 AF1071 AF1310 AF1383 AF1410 AF1705 MA0351 MA0399 MA0579 MA1034 MA1116 MA1125 MA1379 MA1434 MA1890 MA1930 MA2020 MA2187 MA2189 MA2836 MA2931 MA2940 MA2983 MA3158 MA3841 MA4057 MA4463 MA4483 Ta1408 TVN0692 TVN0867 TVN1427 YGR109w-b_2 YIL082w-a_2 SPAC13D1.01c SPAC13D1.02c SPAC167.08 SPAC26A3.13c SPAC27E2.08 SPAC2E1P3.03c SPAC9.04 SPBC1289.17 SPCC1020.14 FN0137 FN0138 FN0139 FN0486 FN0787 FN0841 FN1442 FN1447 FN1530 FN1680 FN1888 FN1889 DRA0075 DRB0019.2 Cgl0239 Cgl0698 Cgl0874 Cgl0875 Cgl0880 Cgl0881 Cgl1485 Cgl1687 Cgl1834 Cgl1835 Cgl2580 Cgl2704 Cgl2885 Cgl2886_2 Rv0796 Rv1369c Rv1756c Rv1764 Rv2106 Rv2167c Rv2279 Rv2355 Rv2479c Rv2649 Rv2812 Rv2814c Rv3185 Rv3187 Rv3326 Rv3380c Rv3430c Rv3475 MT0413 MT1803 MT2879 MT2881 MT3100 MT3534 MT3879 L0432 L0433 L0434 L0435 L0436 L0438 L0439 L0440 L0457 L0458 L0459 L0460 L0461 L0462 L0463 L0464 L0465 L0466 L0467 L0468 L0469 L0470 L0471 L0472 SPy0198 SPy0565_2 SPy1336 SP1485 SA0062 SA0063 SA1622 SA1623 SAP014 pli0058 pli0072 pli0076 BH0335 BH0689 BH2343 BH3417 BH3444 slr1523 all3630 b0257 b1578 b4285 tra5_g1 tra5_g2 tra5_g3 tra5_g4 tra5_g5 yagA yehQ yi22 yi22_g1 yi22_g2 yi22_g3 yi22_g4 yi22_g5 yi5B yjhS Z0322 Z1134 Z1198 Z1207 Z1221 Z1349 Z1466 Z1573 Z1638 Z1647 Z1660 Z1793 Z1825 Z1934 Z1957 Z2065 Z2066 Z2073 Z2108 Z2109 Z2111 Z2376 Z2377 Z2430 Z2806 Z2981 Z3095 Z3107 Z3162 Z3297 Z3342 Z3924 Z3925 Z3926 Z3927 Z4334 Z4503 Z5089 Z5880 Z6054 ZyehQ ZyjhS ECs0288 ECs1088 ECs1090 ECs1207 ECs1208 ECs1311 ECs1380 ECs1391 ECs1527 ECs1564 ECs1666 ECs1689 ECs1781 ECs1918 ECs1961 ECs2189 ECs2219 ECs2262 ECs2478 ECs2636 ECs2745 ECs2746 ECs2795 ECs2931 ECs2932 ECs2959 ECs2972 ECs3133 ECs3491 ECs3498 ECs3862 ECs4025 ECs4537 ECs4549 ECs4945 ECs4993 ECs5244 ECs5268 YPCD1.04 YPCD1.14c YPCD1.15c YPCD1.18c YPCD1.63 YPCD1.64 YPCD1.65 YPCD1.69 YPCD1.75c YPCD1.81 YPCD1.82c YPCD1.89 YPCD1.93 YPCD1.94 YPO0118 YPO0756 YPO0997 YPO1873 YPO1889 YPO2009 YPO2640 YPO3491 YPO3703 YPO3932 YPO4047 YPO4092 PSLT044 STM0297 STM0298 STM0325 STM0947 STM2509 STM2764 STM2765 STM2769 STM4457 VC0257 VC0817 VC1478 VC1789 VCA0371 VCA0508 VCA0791 PA0257 PA0978 PA0986 PA0987 PA1938 PA3142 PA3143 PA3144 PA3868 HI0493 HI1280 HI1721 NMB1081 NMB1751 NMA1234 NMA1284 NMA1882 RSc0423 RSc0578 RSc0828 RSc0829 RSc1435 RSc1436 RSc1438 RSc1439 RSc1492 RSc1493 RSc1549 RSc1830 RSc2265 RSc2267 RSc2313 RSc2331 RSc2405 RSc2406 RSc2408 RSc2706 RSc2707 RSc3089 RSp0460 RSp0503 RSp0504 RSp0548 RSp0557 RSp0558 RSp0567 RSp1216 RSp1217 RSp1299 RSp1303 RSp1333 RSp1624 RSp1625 RSp1628 RSp1629 AGc3822 AGl10 AGl1690 AGl545 AGl547 AGl551 AGpA137 AGpA37 AGpA508 AGpA535 SMa0360 SMa0444 SMa0806 SMa0841 SMa0846 SMa1029 SMa1171 SMa1586 SMa1614 SMa1698 SMb20064 SMb20827 SMb20905 SMb20919 SMb21233 SMc00343 SMc01050 SMc01811 SMc01994 SMc02303 SMc02329 SMc03248 SMc03296 SMc03948 SMc04250 SMc04433 BMEI1223 BMEI1397 BMEI1401 BMEI1408 BMEI1420 BMEI1422 BMEI1423 BMEII0183 BMEII0228 BMEII1097 mll5774 mll6088 mll6089 mll9368 mlr4020 mlr4024 mlr4025 mlr5757 mlr5807 mlr5843 mlr5946 mlr5952 mlr5973_1 mlr6150 mlr6273 msr5947 msr9548 CC0514 CC0515 CC0624 CC2290 CC2291 CC2656 CC2689 CC2690 CC2729 CC2741 CC2742 UU372 MYPU_0180 MYPU_1510 MYPU_3940 MYPU_7560 CLUSTER 2 HI1478 >COG2804 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1474 aq_1971 TM0837 FN2095 DR1964 CAC2105 L0313 SPy0101 SP2053 SA1374 lin1384 BS_comGA BH2832 slr0063 slr0079 all2444 gspE hofB ZhofB ECs0111 YPO0815 YPO3426 STM0143 VC0405 VC2424 VC2732 PA0686 PA2677 PA3103 PA4526 PA5210 HI0298 PM0085 XF1517 XF2544 NMB0329 NMA2159 RSc2308 RSc2825 RSc3115 RSp0148 RSp0464 Cj1471c mlr6819 CC0174 CT571 CPn0816 CLUSTER 2 VC0835 >COG2812 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1855 TM0686 FN1830 DR2410 CAC0125 CAC0300 Cgl0243 Rv3721c MT3824 ML2335 L0279 SPy1364 SP0865 SA0436 lin2852 BS_dnaX BH0034 sll1360_1 sll1360_3 alr4932 alr7570 dnaX ZdnaX ECs0523 YPO3122 STM0484 BU481 VC1054 PA1532 HI1229 PM0364 XF1807 NMB1443 NMA1656 RSc1191 HP0717 jhp0655 Cj1157 AGc147 SMc02905 BMEI1908 mlr5503 CC0267 RP865 RC1336 CT334 CPn0040 TP1005 BB0461 UU087 MYPU_0490 MPN618 MG419 MG420 CLUSTER 2 BB0765 >COG2813 (Putative duplication confidence score 1.000) CLUSTER 1 MJ0882 MK0709 PH1642 PAB0359 SSO0392 TM1664 DR0914 L65498 SPy1232 SP0841 SA0499 lin0284 BS_ybxB BH0124 rsmC ZyjjT ECs5329 YPO0427 STM4556 BU328 VC0623 PA4627 HI0012 PM0958 AGc122 SMc00325 BMEI1959 BMEI1960 mlr5563 CC1837 CLUSTER 2 ygjO ZygjO ECs3966 YPO0588 STM3220 VC2297 PA4617 >COG2818 (Putative duplication confidence score 1.000) CLUSTER 1 Cgl0145 Cgl2777 Rv1210 MT1248 ML1066 L0289 SPy2118 SP0180 SA1489 lin1680 BH1453_1 tag Ztag ECs4434 YPO4074 STM3642 VC1672 PA0010 HI0654 PM1601 NMB1673 NMA1931 RSp0666 AGc1200 SMc00923 BMEII1058 mlr6925 CC0382 CLUSTER 2 PA1193 mll0820 >COG2823 (Putative duplication confidence score 0.500) CLUSTER 1 DR0392 SMb20225 SMb21444 CLUSTER 2 CAC0440 osmY yraP ZosmY ZyraP ECs4031 ECs5334 YPO0431 YPO2202 YPO3551 STM3267 STM4561 VC0578 PA4426 PA4739 HI1658 PM0649 NMB2091 NMA0339 RSc0186 RSc0189 RSc3264_1 SMa1153 RP391 RC0538 >COG2837 (Putative duplication confidence score 0.600) CLUSTER 1 DRA0145 Rv0799c MT0820 alr1585 yfeX Z3696 ECs3302 YPO3025 STM2446 VC2145 PA2765 PM0455 NMB0786 NMA0996 RSc1546_1 mlr1483 CLUSTER 2 Cgl1632 SA0332 lin0386 BS_ywbN ycdB ZycdB ECs1265 YPO1856 NMB0036 NMA0282 >COG2887 (Putative duplication confidence score 1.000) CLUSTER 1 MA2359_2 APE0373 Cgl0751_2 Cgl1464 Rv2119 Rv3202c_2 MT2179 MT3296_2 ML1312 RSc1189_2 HP1089_2 jhp0336_2 Cj1482c_2 AGc40_2 SMc02759_2 BMEI2024_2 mll5084_2 CC3537_2 RP403_2 RC0550_2 TP0899 CLUSTER 2 Cgl0752_2 Rv3201c_2 MT3295_2 >COG2905 (Putative duplication confidence score 1.000) CLUSTER 1 AF0971 aq_2107 Cgl1258 BH3833 VC0300 VC1291 PA3233 CLUSTER 2 BH3742 >COG2932 (Putative duplication confidence score 1.000) CLUSTER 1 FN1589 L102100_2 SPy0657_2 SPy0939_2 SPy1198_2 SPy1486_2 SPy2125_2 SA1805_2 Z1447_2 STM0898 PA0611 PA0906 HI1476 PM0417 XF0696 XF1658 XF2511 NMB0556 NMB0910 NMB1078 NMB1079 NMA0738 NMA1884 AGc784_2 AGc858 SMc02223 SMc04198_2 BMEII0498 mll8500 mlr2136_2 mlr5631 CC0082 CLUSTER 2 STM2738 >COG2936 (Putative duplication confidence score 0.500) CLUSTER 1 Rv1215c MT1253 L61341 SA2380 CLUSTER 2 Rv1835c Rv2800 MT2868 lin2898 slr1771 XF1029 SMb21424 SMc01648 mll5128 mlr6999 CC0940 CC1622 >COG2940 (Putative duplication confidence score 1.000) CLUSTER 1 MA1679 YHR119w YHR207c YJL105w YJL168c YKR029c YPL165c SPAC29B12.02c SPBC428.08c SPBP8B7.07c SPCC1739.05 SPCC297.04c SPCC306.04c SPCC4B3.12 ECU09g1750 XF1478 RSc3358 mll7640 mlr3116 CT737 CPn0878 CLUSTER 2 SPAC22E12.11c >COG2962 (Putative duplication confidence score 0.500) CLUSTER 1 Cgl0133 PA3473 HI0223 HI0680 PM1281 CLUSTER 2 Cgl2080 SA2487 lin0788 BS_yojE BH3866 rarD ZrarD ECs4749 YPO3836 STM2986 STM3955 VC0195 PA0485 RSc0570 AGc1973 SMc02545 BMEI1269 mlr7806 CC0254 >COG2966 (Putative duplication confidence score 1.000) CLUSTER 1 MTH749_1 YJL108c_1 SPAC16A10.01_1 SPAC7D4.12c_1 FN0781 CAC2265 Cgl2571_1 Rv3737_1 MT3842_1 SP1731 SA0543 SA0700 lin0587 BH0081 yjjP ZyjjP ECs5324 YPO0484 STM4546 VC0438 HI0108_1 PM1895 XF1304_1 Cj1166c CLUSTER 2 YJL107c >COG2972 (Putative duplication confidence score 0.800) CLUSTER 1 FN0190 SPy1061 SPy1588 SP0155 SP0662 SA0216 lin2119 BS_yesM BS_ywpD_2 BH0792 BH1122 BH1547_3 BH1909 BH2013_3 BH2110 BH2727 BH3447 BH3678 BH3841 VCA0851 PA5262 XF1625 RSc1351 CLUSTER 2 CAC0080 CAC1582 SPy0242 SPy0244 SPy1605 SP0527 SP2236 SA1843 lin0043 lin0802 >COG2978 (Putative duplication confidence score 1.000) CLUSTER 1 FN0470 FN0591 Cgl0101 SA2261 BH0866 BH1752 abgT Z2428 ECs1920 YPO1008 VC0863 VC0880 PM1104 NMB1719 NMA1973 CC0745 CC1624 CLUSTER 2 Z2431 ECs1917 >COG2985 (Putative duplication confidence score 0.833) CLUSTER 1 VNG7101 FN1450 Cgl0574 Cgl2162 yidE ZyidE ECs4625 YPO4083 STM3807 HI0035 PM1071 CLUSTER 2 ybjL Z1074 ECs0927 YPO1326 STM0870 VC1145 >COG2987 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1208G Ta0239m TVN1356 FN1401 DRA0151 SA2122 BS_hutU BH1983 YPO4017 VC1203 PA5100 RSc2647 AGl1830 SMb21163 BMEII0365 mlr8323 CC0957 CLUSTER 2 FN0792 SPy2082 >COG2991 (Putative duplication confidence score 0.500) CLUSTER 1 YPO3233 VC2288 HI0173 PM1335 NMB0562 NMA0745 CLUSTER 2 VC1322 PA2992 >COG2995 (Putative duplication confidence score 1.000) CLUSTER 1 pqiA yebS Z2880 ZpqiA ECs1034 ECs2543 YPO1420 YPO1702 STM1063 STM1848 VC1500 VC1753 HI1671 PM0267 NMB1670 NMA1928 RSc0602 CLUSTER 2 RSc0603 >COG3005 (Putative duplication confidence score 1.000) CLUSTER 1 napC torC yecK ZnapC ZtorC ZyecK ECs1151 ECs2583 ECs3091 YPO3036 STM2255 STM3823 VC1693 VC1951 VCA0680 PA1172 HI0348 HI0644 PM1598 PM1792 Cj1358c AGl913 SMa0657 SMa0659 SMa1232 CLUSTER 2 Cj0265c >COG3008 (Putative duplication confidence score 0.667) CLUSTER 1 pqiB ZpqiB ECs1035 YPO1421 STM1064 VC1754 NMB1671 NMA1929 RSc0601 RSc2562 CLUSTER 2 yebT Z2881 ECs2544 YPO1701 STM1849 VC1501 PA4689 HI1672 PM0266 >COG3018 (Putative duplication confidence score 0.500) CLUSTER 1 VC2206 HP0837 Cj1026c CLUSTER 2 HP0836 jhp0775 >COG3069 (Putative duplication confidence score 0.500) CLUSTER 1 dcuC dcuD Z4585 ZdcuC ECs0660 ECs4100 STM0627 VCA0665 PM0230 PM0933 CLUSTER 2 HI0585 HI0586 PM1299 >COG3083 (Putative duplication confidence score 0.500) CLUSTER 1 yejM ZyejM ECs3080 YPO1260 STM2228 VC2041 HI0841 PM1883 CLUSTER 2 VC2600 PA0924 >COG3108 (Putative duplication confidence score 1.000) CLUSTER 1 ycbK ZycbK ECs1009 YPO1408 STM0996 VC1269 HI1665 HI1666 PM0271 AGl2143_1 SMc04010_1 BMEII0010_1 mll2999_1 mlr6494_1 CC1512 CLUSTER 2 AGc3311 SMc00291 BMEI0722 mlr0938 >COG3111 (Putative duplication confidence score 1.000) CLUSTER 1 ydeI ZydeI ECs2145 STM1515 CLUSTER 2 ygiW Z1498 Z2099 ZygiW ECs1244 ECs2197 ECs3906 YPO3027 PSLT020 STM3176 VCA0732 PA0320 HI1709 PM1171 >COG3126 (Putative duplication confidence score 1.000) CLUSTER 1 ybaY ZybaY ECs0507 YPO3140 STM0465 VC1064 PA3674 AGc4472_1 BMEI1255_1 mlr7916_1 CLUSTER 2 PA4058 >COG3131 (Putative duplication confidence score 0.833) CLUSTER 1 mdoG ZmdoG ECs1426 STM1150 VC1288 PA5078 RSc2908 CLUSTER 2 ydcG ZydcG ECs2029 STM1622 XF2682 RSc3057 RSp0262 >COG3142 (Putative duplication confidence score 1.000) CLUSTER 1 FN0469 L56431 SPy0408 SP1260 lin0025 cutCm ZcutCm ECs2584 YPO2048 STM1907 VC0730 PM0526 XF1341 AGc4698 SMc02879 mlr1122 CC2360 CLUSTER 2 lin1017 >COG3145 (Putative duplication confidence score 1.000) CLUSTER 1 SPAP8A3.02c SPBC13G1.04c Cgl0144 Rv0999a MT1029 ML0190 all7279 alkB ZalkB ECs3101 STM2264 VCA0961 PA3306 XF1299 RSc2568 AGc894 SMb20399 SMc02566 BMEII0739 mlr5099 msr6861 CC0009 CLUSTER 2 mlr6860 >COG3148 (Putative duplication confidence score 1.000) CLUSTER 1 yfiP ZyfiP ECs3449 YPO3271 STM2650 VC0131 VC1533 PA3606 CLUSTER 2 VC1980 PA1424 >COG3150 (Putative duplication confidence score 0.857) CLUSTER 1 ycfP ZycfP ECs1486 YPO1616 STM1210 VC1892 PM0825 CLUSTER 2 yqiA ZyqiA ECs3919 YPO0667 STM3182 VC2432 PA4968 RSc2781 >COG3153 (Putative duplication confidence score 1.000) CLUSTER 1 MA0446 MA1701 Cgl1207 L1005 SA0435 SA0741 lin1847 all1321 yhbS yjhQ ZyhbS ECs4037 YPO3476 STM3272 VC0655 VCA0263 PA0711 PA2455 AGc3283 AGc4108 AGl3231 SMa0359 SMc00230 SMc02707 SMc02982 BMEI0456 BMEI0466 mll2972 mll4853 mlr2800 CC0405 CLUSTER 2 SMa0357 >COG3166 (Putative duplication confidence score 0.500) CLUSTER 1 slr1275 alr1029 yrfC ZyrfC ECs4236 YPO0147 STM3491 VC2633 PA5043 XF0370 NMB1809 NMA0653 RSc2974 CLUSTER 2 XF1524 mlr6815 >COG3176 (Putative duplication confidence score 0.500) CLUSTER 1 Rv3027c MT3111 alr0228 PA4350 RSc1538 AGc599 SMc01127 BMEI1800 mlr3216 CLUSTER 2 VC0489 VCA0646 SMc02490 mll0913 CC3533 >COG3179 (Putative duplication confidence score 1.000) CLUSTER 1 DRA0117 STM0907 STM1869A PA0629 HI1415 SMc03769_1 CLUSTER 2 SMb20518 SMb20922 >COG3181 (Putative duplication confidence score 1.000) CLUSTER 1 FN2103 Cgl2764 BS_yflP BH2007 STM2786 VC1334 PA0754 PA2209 PM1679 RSc2963 RSc3088 AGc180 AGc4482 AGl312 AGpA473 SMa1927 SMb20025 SMb20724 SMb20771 SMc00499 CLUSTER 2 SMb21043 >COG3182 (Putative duplication confidence score 1.000) CLUSTER 1 Cgl2275 SA1275 BH0982 BH1854 VCA0891 PA0801 PA1909 PA2403 PA2465 PA3789 PA4513_1 NMB1721 NMA1975 RSp1642 AGc3630 CC1782 CC2927 CC3501 CLUSTER 2 PA4219 >COG3185 (Putative duplication confidence score 0.600) CLUSTER 1 Cgl0417_2 PA0242_2 RSp1400_2 AGl678_2 SMb20581_2 CLUSTER 2 slr0090 all0771 VC1344 PA0865 RSc3103 RSp1316 RSp1347 SMc03211 mll8309 CC2533 >COG3188 (Putative duplication confidence score 1.000) CLUSTER 1 slr0019 fimD htrE sfmD ybgQ ycbS ydeT yehB yfcUm yqiG yraJ Z0022 Z1288m Z1536 Z2203 Z3600 Z4968m Z5222 ZfimD ZhtrE ZsfmD ZybgQ ZyehB ZyraJ ECs0022 ECs0143 ECs0594 ECs0743 ECs1023 ECs1024 ECs1278 ECs2110 ECs2915 ECs3221 ECs4022 ECs4428 ECs4429 ECs4667 ECs5276 YPMT1.83 YPO0698 YPO1305 YPO1696 YPO1709 YPO1920 YPO3879 PSLT017 STM0023 STM0175 STM0196 STM0301 STM0338 STM0546 STM2150 STM3028 STM3638 STM4593 PA0994 PA2130 PA4084 PA4652 XF0081 RSc2693 RSp1498 AGl299 mll7724 RC0641 CLUSTER 2 yhcD YPO0302 STM4572 >COG3191 (Putative duplication confidence score 0.500) CLUSTER 1 PH0078 PAB0045 PA1486 RSc1383 AGc4562 AGpA343 SMa0095 BMEII0741 mll6895 mlr2477 CLUSTER 2 SSO1540 DR0782 Cgl2463 Rv1333 MT1375 ML1167 AGc4649 SMc00512 BMEII0898 mll0085 CC2187 >COG3199 (Putative duplication confidence score 0.667) CLUSTER 1 AF0748 SSO1527 PA4149 CLUSTER 2 VNG0764C Ta1068 TVN0523 PH1675 PAB0335 SSO0869 APE1825 PA1572 >COG3200 (Putative duplication confidence score 1.000) CLUSTER 1 Cgl2130 Rv2178c MT2234 ML0896 PA2843 HP0134 jhp0122 Cj0716 AGc2964 SMc00155 BMEI0971 mll0826 CC2300 CLUSTER 2 PA1901 PA4212 >COG3209 (Putative duplication confidence score 1.000) CLUSTER 1 MA2043 MA2045 CAC1057 CAC1061 lin0454 BS_wapA rhsA rhsB rhsC rhsD rhsE ybfO yibJ ylbH Z0268 Z0272 Z0651 Z0702 Z0705 Z0851 Z2257 Z2259 Z2261 Z5485 Z5487 Z5488 ZrhsA ZrhsC ZyibJ ECs0237 ECs0242 ECs0560 ECs0603 ECs0605 ECs0729 ECs2061 ECs4470 ECs4864 YPO2312_1 YPO2380 YPO3608 YPO3609 YPO3615 YPO3673 YPO3674 STM0291 STM0292 PA2457 PA2458 PA2684 RSc2470 RSp0085 RSp0086 RSp0096 RSp0151 RSp0157 RSp0449 RSp0454 RSp0455 RSp0456 RSp0457 RSp0458 RSp0459 RSp0476 RSp0477 RSp1137 RSp1305 RSp1335 RSp1585 mll6838_2 CLUSTER 2 YPO0762 >COG3210 (Putative duplication confidence score 1.000) CLUSTER 1 FN0132 FN1817 CLUSTER 2 FN0290 FN0291 slr1753_1 all2171 all4433 all5104 all5105 all5106 all5107 all5108 all5110 all5111 all5112 all5113 all5114 all5115 all5280 all7072 all7235 all7313 alr0366 alr0367 alr1184 alr1397 alr1906 Z1542 ECs1282 YPO0599 YPO2045 YPO2486 YPO2490 YPO3247 YPO3721 YPO4006 PA0041 PA0690 PA2462 PA4082 PA4541 PA4625 HI0264 PM0057 PM0059 XF0889 XF0893 XF0897 XF2196 XF2775 NMB0490 NMB0493 NMB0497 NMB0499 NMB0502 NMB0506 NMB0511 NMB1214 NMB1768 NMB1772 NMB1775 NMB1779 NMA0688 NMA0690 NMA0692 RSc0887 RSc1775 RSc3183 RSc3188 RSp0540 RSp1071 RSp1073 RSp1444 RSp1536 RSp1539 RSp1545 Cj0737 Cj0968 CC0602 >COG3213 (Putative duplication confidence score 1.000) CLUSTER 1 VC2330 PA2662 NMB0439 NMA2046 RSc3399 AGl924 AGl968 SMa1194 SMa1252 BMEII0964 CLUSTER 2 NMB0552 NMA0732 >COG3230 (Putative duplication confidence score 0.500) CLUSTER 1 DRA0052m PA4116 CLUSTER 2 PA0672 NMB1669 NMA1927 AGc4545 >COG3246 (Putative duplication confidence score 0.500) CLUSTER 1 AF1210 FN1868 Rv1718 PA5387 AGpA488 SMc01637 mll0106 mll1033 mlr5039 mlr9032 CLUSTER 2 DR0052 RSc0083 SMa0574 SMb20275 mll1845 >COG3250 (Putative duplication confidence score 0.500) CLUSTER 1 SSO3036 TM1062 TM1193 L0025 SPy1586 SP0648_2 BH2723 ebgA lacZ uidA ZebgA ZlacZ ZuidAm ECs0397 ECs2324 ECs2325 ECs3958 YPO1654 SMb21655 CLUSTER 2 TM1624 XF0846 AGc2809 AGc4665 SMc04255 >COG3258 (Putative duplication confidence score 0.500) CLUSTER 1 sll1359_2 PA2481 PA4571_2 Cj0874c BMEII0895 CLUSTER 2 RSp1453 Cj0037c >COG3264 (Putative duplication confidence score 1.000) CLUSTER 1 slr0510_1 slr1575_1 aefA ZaefA ECs0518 YPO3129 STM0478 PA1408 PA5022 HI0195.1 PM0358 RSc2451 AGc3014 SMa1582 SMc00028 SMc04176 BMEI0682 mll1272 CC3000 CLUSTER 2 yjeP ZyjeP ECs5138 YPO0363 STM4347 >COG3267 (Putative duplication confidence score 1.000) CLUSTER 1 Rv2813 MT2880 PSLT043 VC0403 VC1798 VC2445_1 PA3869 PA5037_1 CLUSTER 2 VC2627_1 >COG3269 (Putative duplication confidence score 1.000) CLUSTER 1 AF0280 VNG0287a VNG2263G_2 VNG6090C VNG6437C VNG7069 VNG7140 MA0056 MA0057 MA0058 MA0059 MA0182_2 MA1288_2 MTH1263 MJ0660 MK1022 Ta0605_2 TVN0655_2 PAE3058 CLUSTER 2 VNG1050H >COG3271 (Putative duplication confidence score 1.000) CLUSTER 1 MA2198 MTH1463 MTH97 PA1762 PA1953 NMB0103 NMB0582 NMB0855 NMA0173 NMA0767 NMA1066 RSc0445 Cj0058 CLUSTER 2 MTH1330 MTH1332 MTH1651 MTH1653 MTH96 >COG3288 (Putative duplication confidence score 1.000) CLUSTER 1 Rv0155 ML2636 slr1239 all3410 pntA ZpntA ECs2309 YPO2303 STM1479 VCA0563 PA0195 HI1362 PM0753 NMB0980 NMA1177 RSc2730 RSp0949 AGc4529 SMc03950 BMEII0323 mlr5181 CC3305 RP863 RC1334 CLUSTER 2 Rv0156 ML2635 asl3409 PA0195a RSc2732 RSp0950 SMc03939 BMEII0324 mlr5183 CC3304 RP862 RC1333 >COG3290 (Putative duplication confidence score 1.000) CLUSTER 1 Cgl0068 SPy1107 BS_citS BS_ydbF BS_yufL BH0397 BH2752 BH3839 citA dcuS ZcitA ZyjdH ECs0658 ECs5107 STM0053 STM0625 STM4304 VC0791 VC1605 CLUSTER 2 BS_yccG >COG3292 (Putative duplication confidence score 1.000) CLUSTER 1 sll0241 all1523 VC1353_1 XF1330_1 CLUSTER 2 VC2080_1 >COG3298 (Putative duplication confidence score 0.500) CLUSTER 1 NMB1417 NMA1628 HP0688 Cj1132c CLUSTER 2 HP0689 jhp0628 >COG3299 (Putative duplication confidence score 1.000) CLUSTER 1 lin1287 BS_xkdT BS_yqbT ymfP ECs4987 YPO1250 HI1520 XF1598 XF1704 NMA1323 NMA1826 NMA1827 CLUSTER 2 lin1710 >COG3321 (Putative duplication confidence score 1.000) CLUSTER 1 CAC3355 Cgl2811_1 Rv0405_1 Rv1180 Rv1181 Rv1527c Rv1661 Rv1662 Rv1663 Rv1664 Rv2048c_1 Rv2048c_2 Rv2381c Rv2382c Rv2931 Rv2932 Rv2933 Rv2934 Rv2935_1 Rv2940c Rv2946c Rv2947c Rv3800c_1 Rv3825c MT0418_1 MT1218 MT1701 MT1702 MT1703 MT1704 MT2108_1 MT2108_2 MT2449 MT2450 MT3000 MT3002 MT3003 MT3004 MT3005_1 MT3010 MT3018 MT3021.1 MT3907_1 MT3933 ML0101_1 ML0135 ML0139 ML1229 ML2353_1 ML2354 ML2355 ML2356 ML2357 BS_pksD BS_pksK_2 BS_pksK_3 BS_pksK_4 BS_pksL_1 BS_pksL_2 BS_pksL_3 BS_pksL_4 BS_pksM_1 BS_pksM_2 BS_pksM_3 BS_pksP_2 BS_pksP_3 BS_pksP_4 BS_pksR_2 all1643_1 all1644 all1646 all1648_1 all1649 all2635 all2646 alr2679 alr2680 alr5351 alr5353 alr5354 alr5355 YPO1910_1 RSc1806_2 RSc1810_1 RSp0641_2 AGl2313 AGl2329 SMc02273 mlr9053_1 CLUSTER 2 BS_pksR_1 >COG3329 (Putative duplication confidence score 0.500) CLUSTER 1 Rv2387 MT2456 BH3869 alr0986 CC3509 CLUSTER 2 slr1512 all2134 >COG3341 (Putative duplication confidence score 1.000) CLUSTER 1 YMR234w_1 SPBC336.06c_1 TM1296 CAC2551 BH0863 CLUSTER 2 CAC1856 >COG3342 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1422H PAE3380 SSO1350 SSO1945 SSO1947 APE1388 BH2194 CLUSTER 2 VNG2644a PA5391 >COG3347 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0481_1 BS_yuxG_1 BH1550_1 slr1208_1 YPO1811_1 AGl2690_1 SMb20837 SMb21015 SMc02322_1 mll7289_1 mlr5708_1 CLUSTER 2 SMc01619 mlr3601 mlr7271 >COG3349 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0277G Rv3727 MT3830 sll0254_3 slr0940 slr1254 all2382 alr1788 alr1832 alr2257 alr2785_3 CLUSTER 2 sll0254_1 alr2785_1 >COG3367 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1839H MK0569 Ta0025 TVN0072 TM0796 all3531 SMc03251 CLUSTER 2 MTH1837 MK0035 MK1582 >COG3370 (Putative duplication confidence score 1.000) CLUSTER 1 AF1964 Ta0241 TVN1354 PAE2742 SSO2867 APE1568 CLUSTER 2 Ta0584a TVN0643 >COG3371 (Putative duplication confidence score 0.800) CLUSTER 1 Ta0785 TVN0809 PH1785 PAB0225 PAE2889 SSO3111 CLUSTER 2 Ta0986 TVN0479 PH0262 PH1610 PAB0162 APE2535 >COG3384 (Putative duplication confidence score 0.750) CLUSTER 1 MA0486 Ta1117 SSO1913 SSO2052 SPBC1709.16c CAC0851 ygiD ZygiD ECs3927 YPO0659 STM3189 PA2839 RSc0015 CC2958 CLUSTER 2 YPO1764 STM1103 PA4124 PM1531 >COG3385 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0052H VNG0059H VNG0112H VNG0337H VNG1590H VNG1653H VNG2175H VNG6015H VNG6016H VNG6038H VNG6042H VNG6079H VNG6106H VNG6111H VNG6147H VNG6148H VNG6161H VNG6290H VNG6331H VNG6345H VNG6366H VNG6395H VNG6447H VNG6484H VNG7012 VNG7032 VNG7035 VNG7037 VNG7059 VNG7119 VNG7150 VNG7172 VNG7174 MA0984 MA1757 MA2016 MA2679 MA2857 MA3329 TVN0693 TVN1465 SSO0132 SSO0137 SSO0141 SSO0515 SSO0525 SSO0549 SSO0787 SSO10674 SSO10982 SSO11138 SSO11307 SSO1180 SSO12063 SSO12067 SSO1245 SSO1280 SSO1293 SSO1302 SSO1317 SSO1367 SSO1396 SSO1408 SSO1417 SSO1448 SSO1466 SSO1472 SSO1473 SSO1480 SSO1509 SSO1546 SSO1572 SSO1599 SSO1627 SSO1642 SSO1678 SSO1688 SSO1703 SSO1735 SSO1775 SSO1779 SSO1796 SSO1822 SSO1832 SSO1833 SSO1847 SSO1850 SSO1853 SSO1856 SSO1904 SSO1937 SSO1938 SSO1978 SSO1995 SSO2086 SSO2103 SSO2104 SSO2120 SSO2145 SSO2540 SSO2562 SSO2721 SSO2724 SSO2784 SSO2834 SSO2845 SSO2855 SSO2883 SSO2888 SSO2889 SSO2922 SSO2985 SSO3018 SSO3027 SSO3033 SSO3101 SSO3135 SSO3151 SSO3259 SSO6050 SSO6566 SSO7351 SSO7635 SSO7986 SSO8002 SSO9407 DR0010 DR0870 DR1284 DR1285 DR1618 DR1762 DR2222 DRA0253 DRB0018 DRB0055 DRB0058 DRB0059 DRB0103 DRB0113 DRB0114 DRB0132 BH0436 BH0691 BH0769 sll0010 sll0315 sll0317 sll1255 sll1474 sll1560 sll1780 sll1997 sll1999 slr0180 slr1635 slr2036 all7115 all7244 yi41 yi81 yi81_g1 yi81_g2 RSc1484 RSc1864 RSc3168 RSc3242 RSp0465 RSp1149 RSp1300 SMb20766 SMc00721 SMc01453 SMc02719 SMc02731 SMc02762 SMc02823 SMc03067 SMc04116 CLUSTER 2 VNG6007H VNG6119H VNG7005 VNG7085 >COG3386 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0648 TVN0929 SSO2705 SSO3041 YBR053c DR0277 SA2480 BS_yvrE STM2668 PA1293 PM1248 XF1297 XF1742 RSc2755 RSp0824 RSp0832 AGc1268 AGl1336 AGl1647 AGl1784 AGpA685_2 SMa0060 SMa0196 SMa0717_2 SMb20453 SMc00883 SMc04142 BMEI1997 BMEII0198 mll1724_2 mll4328 mll7820 mlr4744 mlr7379 msl1031 CC0820 CC1224 CC1805 CC2128 CLUSTER 2 DR1790 >COG3387 (Putative duplication confidence score 0.500) CLUSTER 1 MA1190 MA4050 MJ1610 Ta0342 TVN0428 SSO0990 SSO1163 SSO1167 SSO2473 YIL099w SPBC14C8.05c CAC2810 alr1586 AGl102 mlr4205 CC2282 CLUSTER 2 Ta0286m TVN1315 SSO2742 SSO2754 SPAC4H3.03c Cgl2214 Rv2402 MT2474 RSc1458 >COG3396 (Putative duplication confidence score 1.000) CLUSTER 1 SSO1312 SSO1313 SSO2018 SSO2019 DR2386 BH0196 ydbO RSp0604 SMb21640 CLUSTER 2 DR2384 BH0198 ydbP RSp0606 SMb21638 >COG3408 (Putative duplication confidence score 0.571) CLUSTER 1 MA0905 MA2628 Ta0341 TVN0429 SSO0991 YPR184w_2 DR0191 all4639 CLUSTER 2 MA1640 Ta0147 Ta0686 Ta0687 TVN1147 TVN1148 PH1222 PAB0689 BH3691 alr0331 SMb20116 SMb20968 mll0692 >COG3424 (Putative duplication confidence score 1.000) CLUSTER 1 DR2091 DRA0326 Rv1660 Rv1665 MT1698 MT1705 BS_bcsA BH0617 CLUSTER 2 Rv1372 MT1417 >COG3437 (Putative duplication confidence score 1.000) CLUSTER 1 TM0186 TM1147 CAC3251 sll1624 slr2100 alr3920 VC1348 VCA0210 PA4781 XF1113 CLUSTER 2 VC1087 PA2572 >COG3444 (Putative duplication confidence score 1.000) CLUSTER 1 FN0631 CAP0066_2 L1762179_2 SPy0631 SPy1058 SPy1738_2 SP0061 SP0284_2 SP0323 SP2163 lin0021 lin0143_2 lin0776 lin2110 BS_levE agaB agaV manX_2 Z5616 ZagaB ZagaV ZmanX_2 ECs2527_2 ECs4011 ECs4018 ECs5001 YPO0834 YPO1758_2 STM0576 STM1830_2 STM3771 STM4536 PM0834_2 CLUSTER 2 CAC1458 >COG3449 (Putative duplication confidence score 1.000) CLUSTER 1 CAC3490 lin1814_2 BS_yosT BH0401_2 BH4009 ygiV Z4375 ECs3905 STM3175_2 RSc0132_2 RSp1247_2 mll4902_2 CC2527_2 CLUSTER 2 sbmC ZsbmC ECs2811 STM2061 >COG3450 (Putative duplication confidence score 0.500) CLUSTER 1 TM1112 asr1714 PA1917 PA2762 PA3425 PA5314 AGc2315 AGc536 AGl2844 SMa1840 SMc01810 mll2946 mll3593 mll7047 mlr4195 mlr4196 mlr4197 mlr8466 CLUSTER 2 STM3127 PA2318 >COG3454 (Putative duplication confidence score 1.000) CLUSTER 1 all2216 phnM ZphnM ECs5078 YPO3463 PA3374 AGc279 SMb21171 BMEI1106 mll4974 mll9156 mlr9276 CLUSTER 2 all2221_2 mlr2305 >COG3464 (Putative duplication confidence score 1.000) CLUSTER 1 MA2406 MA2954 MA3988 TVN0466 TVN0687 TVN0688 FN0274 FN0275 FN0599 Cgl0876 Cgl1015 Cgl1042 Cgl2316 Cgl2427 Rv0741 Rv1313c Rv2810c Rv3798 MT0725 MT0767 MT1353 MT3905 SP0460 SP0836 SP1262 SP1444 SP1582 SP1639 SP1692 SP1792 SA0369 SA0586 SA0787 SA1006 SA1541 SA1677 SA1884 SA2289 BH0089 BH0123 BH0245 BH0270 BH0379 BH0416 BH0668 BH0767 BH0954 BH1049 BH1170 BH1183 BH1307 BH1338 BH1347 BH1381 BH1412 BH1473 BH1546 BH1686 BH1701 BH1929 BH1946 BH1963 BH2154 BH2204 BH2377 BH2472 BH2477 BH2641 BH2651 BH2774 BH2922 BH2967 BH2978 BH3137 BH3247 BH3409 BH3499 BH3507 BH3565 BH3585 BH3752 all7161 alr1609 alr2698 alr7003 alr7305 alr7349 alr7350 alr7386 alr8016 asr7006 RSc2573 RSp1547 AGpA139 SMa0643 mll5961 mll6319 CLUSTER 2 mll9026 >COG3476 (Putative duplication confidence score 0.500) CLUSTER 1 AF1475 MA4214 SPBC725.10 CAC0262 L173469 BS_ytaB all3007 AGc485 SMa1079 CLUSTER 2 sll1845 all4617 alr4114 alr4115 >COG3482 (Putative duplication confidence score 1.000) CLUSTER 1 MA0164 MTH989 Rv1376 MT1420 AGl2517 SMb21116 SMc01412 mll0573 CLUSTER 2 MTH988 >COG3483 (Putative duplication confidence score 1.000) CLUSTER 1 DRA0339 PA2579 RSc0758 mlr0620 CC2886 CLUSTER 2 RSp0694 >COG3498 (Putative duplication confidence score 1.000) CLUSTER 1 Z2990 ECs2644 STM2700 PA0623 XF0728 XF2484 RSc1917 CLUSTER 2 STM4212 >COG3504 (Putative duplication confidence score 1.000) CLUSTER 1 XF2051 XFa0013 XFa0042 RSc2576 HP0528_3 jhp0477_3 AGpA229 AGpT12 AGpT73 SMa1306 BMEII0033 mll9604 mlr6404 mlr9258 CC2421 CC2686 RP286 RP290 RC0384 RC0388 CLUSTER 2 HP0039m HP0528_1 jhp0035 jhp0477_1 jhp0922m_1 >COG3507 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0577 BS_abnA BS_yxiA BH1878 CLUSTER 2 CAC3452 CAP0114 L0234 BS_xynB BH3683 yagH SMc04247 CC0813 CC0989 CC2802 >COG3511 (Putative duplication confidence score 0.500) CLUSTER 1 SSO2789 Rv1755c Rv2349c Rv2350c Rv2351c MT1799 MT2414 MT2415 MT2416 PA0844 PA3319 RSc0319 CC3031 CLUSTER 2 RSp1174 mlr8246 >COG3523 (Putative duplication confidence score 1.000) CLUSTER 1 Z0250 ECs0218 YPO0515 YPO2724 YPO3603 STM0285 VCA0120 PA0077 PA1669 RSp0763 AGl1062 mlr2349 mlr2360 CLUSTER 2 YPO1482 PA2361 >COG3527 (Putative duplication confidence score 1.000) CLUSTER 1 MA3744 CAC2967 L0321 L0322 SP1392 SA2007 SA2394 lin2099 BS_alsD VC1589 CLUSTER 2 MA3746 >COG3531 (Putative duplication confidence score 1.000) CLUSTER 1 YPO0630 PA0859 RSc0778 CLUSTER 2 YPO0801 VCA0901 PA0058 RSc1444 mll3417 >COG3536 (Putative duplication confidence score 1.000) CLUSTER 1 PA2292 CLUSTER 2 PA5055 NMB0742 NMA0955 RSc0457 AGc3112 SMc00145 BMEI1018 mll0540 >COG3541 (Putative duplication confidence score 1.000) CLUSTER 1 MJ0002 CAC1496 CAC1497 BS_ycgL alr0150 asr5365 PA4584 RSc0225 mll4259 CLUSTER 2 alr5366 >COG3549 (Putative duplication confidence score 1.000) CLUSTER 1 all2924 VCA0391 HI1250 XF0721 SMc02461 SMc02476 mlr1576 CLUSTER 2 XF1709 >COG3552 (Putative duplication confidence score 0.667) CLUSTER 1 MTH1815 Rv2425c MT2498 CLUSTER 2 APE2221 Rv0368c MT0384 RSc1465 SMc00516 mlr0089 mlr1707 >COG3555 (Putative duplication confidence score 1.000) CLUSTER 1 all5009 STM4286 PA0936 PA4512 XF2100 RSc1877 BMEI0464 BMEI0465 mll1937 mlr0331 CLUSTER 2 XF2039 >COG3561 (Putative duplication confidence score 1.000) CLUSTER 1 CAC1945 L52331_1 SPy0946_1 SA1801_1 Z1503 ECs1251 HI1422 NMA1293 CLUSTER 2 Z1818_2 ECs1199_2 ECs1557_2 >COG3562 (Putative duplication confidence score 1.000) CLUSTER 1 PM0772 NMB0083 NMA0185 Cj1413c SMc02269 CLUSTER 2 SMb20824_2 >COG3599 (Putative duplication confidence score 0.667) CLUSTER 1 DR1369 CAC2118 Cgl2100 Rv2145c MT2204 ML0922 L102051 L117685 SPy1514 SPy1646 SP0372 SP1661 SA1035 SA1279 lin2002 lin2128 BS_divIVA BS_ypsB BH1769 BH2546 MYPU_3050 CLUSTER 2 Cgl2024 Rv2927c MT2997 ML1661 slr0848 alr4701 >COG3604 (Putative duplication confidence score 0.625) CLUSTER 1 aq_1792 aq_218 fhlA hyfR ZfhlA ZhyfR ECs3353 ECs3587 STM2859 PA1663 SMa0815 mll5837 mll5857 CLUSTER 2 ygaA ZygaA ECs3565 STM2839 VCA0182 PA2665 RSp0959 TP0082 >COG3616 (Putative duplication confidence score 0.750) CLUSTER 1 YGL196w SPAC1039.06 FN0552 Cgl2558 Rv1413 Rv1414 MT1457 RSc2709 RSp1185 AGl1808 AGl1837 AGpA328 SMb21134 BMEII0546 mll6666 mll8328 CC3106 CLUSTER 2 Rv1769 MT1820 PA5326 mlr8208 >COG3618 (Putative duplication confidence score 0.500) CLUSTER 1 YPO1933 RSp0233 Cj0556 AGl3341 CLUSTER 2 PA2211 Cj0487 AGc5105 AGl2610 SMb21101 BMEI1718 mll5767 mlr1708 mlr7156 >COG3622 (Putative duplication confidence score 1.000) CLUSTER 1 Cgl2056 mll1001 mlr7629 CLUSTER 2 Cgl2419 gip ygbM Zgip ECs0569 YPO1238 STM0518 STM2915 PA0550 PA1501 HI1013 PM1363 RSc0020 RSc3282 SMb20669 SMb20680 BMEII1092 mlr0252 >COG3627 (Putative duplication confidence score 1.000) CLUSTER 1 all2219 phnJ ZphnJ ECs5081 YPO3460 PA3377 AGc297 SMb20762 mlr3346 CLUSTER 2 mll9152 mlr9282 >COG3636 (Putative duplication confidence score 0.500) CLUSTER 1 YPO1088 XFa0046 CLUSTER 2 HI1420 XF1596 XF1702 XF2763 RSp0076 SMc00178_2 CC3037 >COG3639 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2084G PAE2697 FN1137 Cgl1423 Cgl1424 L98204 L99004 SA0135 SA0136 BH0441 BH0442 BH0470 BH2975 BH2976 all2227 all2356 all8088 b4103 phnE ZphnE ECs5086 YPO1184 YPO1185 PA3315 PA3316 PA3382 AGc284 AGc285 SMb21174 SMb21175 mlr3356 mlr3358 mlr3359 CC0363 MYPU_2180 MPN417 MG291 CLUSTER 2 MYPU_1080 >COG3640 (Putative duplication confidence score 1.000) CLUSTER 1 AF0378 AF1685 MA1013 MA1967 MA3863 MTH1120 MTH1711 MJ0685 MJ0823 MK0721 MK0726 CLUSTER 2 MA1021 MA1340 MA2780 MA3449 MTH571 MJ0084 >COG3646 (Putative duplication confidence score 0.500) CLUSTER 1 L42465 lin1260_1 lin1738_1 BS_yoqD_1 Z1457_1 ECs1200_1 HI1412 PM1774 CLUSTER 2 L6094 SP1134 >COG3652 (Putative duplication confidence score 1.000) CLUSTER 1 DR1385 PA2134 SMb20223 SMb20593 mll8139 CC3563 CLUSTER 2 PA2109 >COG3662 (Putative duplication confidence score 1.000) CLUSTER 1 Rv0276 Rv2237 MT0288 MT2296 CLUSTER 2 Rv0826 Rv1645c MT0848 MT1683 PA4734 RSp1255 CC2570 >COG3669 (Putative duplication confidence score 0.500) CLUSTER 1 SSO11867 SSO3060 TM0306 XF2714 CC0795 CLUSTER 2 SP2146 XF0106 >COG3670 (Putative duplication confidence score 0.500) CLUSTER 1 Rv0654 Rv0913c MT0683 MT0938 all1106 CC0776 CLUSTER 2 sll1541 slr1648 all4284 all4895 RSp0212 CC0333 >COG3677 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0918H_1 VNG7107_1 MA1315 MA1650 MA1879 MA2162 MA2470 MA2734 MA2785 MA2946 MA3005 MA3222 MA3311 MA3375 MA3511 MA3848 MA4108 MA4225 PH1854 PAB2064 SSO0509 SSO0511_1 SSO0541_1 SSO1436_1 SSO1654_1 SSO2242 SSO2320_1 SSO2898 SSO2950_1 SSO8684 SSO8685 CAC1493 CAC1597 sll1156 slr1902 slr2095 insA_g1 insA_g2 insA_g3 insA_g6 insA_g5 insA_g7 Z1122 Z1561 ECs1373 YPO0964 YPO0968 YPO0981 STM0861_1 RSc3179 CLUSTER 2 RSc0889 >COG3678 (Putative duplication confidence score 1.000) CLUSTER 1 sll0858 alr4637 spy yiiO Zspy ZyiiO ECs2449 ECs4839 YPO0075 STM0307 STM1308 STM4060 VC2691 PA3205 NMA1414 RSp1160 SMb21562 CLUSTER 2 zra ZyjaI ECs4925 STM4172 >COG3679 (Putative duplication confidence score 0.800) CLUSTER 1 AF1058 VNG0853C SPy0811 SP1372 SA1663 lin2326 BS_yheA BH1149 CLUSTER 2 L162952 SA0968 lin2161 BS_ylbF BH2596 >COG3685 (Putative duplication confidence score 0.833) CLUSTER 1 all0615 yciF Z1923 ZyciF ECs1654 ECs1830 STM1729 AGl1433 AGpA401 AGpA721 AGpA727 SMc00371 mll4608 mll9661 mlr3134 CLUSTER 2 yciE Z1922 ZyciE ECs1653 ECs1829 STM1730 PA2184 SMb20091 >COG3704 (Putative duplication confidence score 1.000) CLUSTER 1 XFa0011 AGpA226 AGpT10 SMa1311 BMEII0030 mlr9255 CC2420 RP104 RP105 RC0142 RC0143 CLUSTER 2 RP106 RP107 RP108_1 RC0144 RC0145 RC0146_1 >COG3706 (Putative duplication confidence score 1.000) CLUSTER 1 TM0143 BH2234 slr1760 all2874 alr2306_1 alr3599 PA3702 PA4396 PA4843 Cj0643 AGc1956 AGc2387 SMc01370 BMEII0660 mll0859 mll9509 CC1842 CC2462 RP237 RC0321 BB0419 CLUSTER 2 BH2233 >COG3711 (Putative duplication confidence score 1.000) CLUSTER 1 FN0198 CAC0155 CAC0422 CAC0569 CAC1355 CAC1406 Cgl2781 L0154 L30901 SPy0181 SPy0571 SPy1325_1 SPy1952_1 SP0306 SP0395 SP0576 SP1187 SP2032 SP2131_1 SA0235_1 SA0321_1 SA1191 SA1961 SA2433_1 lin0325_1 lin0425_1 lin0445_1 lin0501_1 lin0871_1 lin0919_1 lin2203_1 lin2243 lin2455_1 lin2530 lin2801_1 lin2817_1 BS_glcT BS_licR_1 BS_licT BS_sacT BS_sacY BS_ydaA BS_yjdC_1 BH0193_1 BH0220_1 BH0297 BH0781 BH0845 BH3853 bglG csiE ZcsiE ECs3401 YPO2903 STM2553 STM4448_1 CLUSTER 2 frvR_1 ZfrvR_1 ECs4823_1 >COG3722 (Putative duplication confidence score 1.000) CLUSTER 1 mtlR ZmtlR ECs4477 YPO4066 STM3687 VCA1047 PM1063 CLUSTER 2 yggD ZyggD ECs3805 >COG3732 (Putative duplication confidence score 1.000) CLUSTER 1 lin0547 BH0772 srlE ZsrlE.2 STM2752 STM2833 PM1970 mll3613 CLUSTER 2 ZsrlE.1 >COG3741 (Putative duplication confidence score 1.000) CLUSTER 1 DR1397 YPO1971 PA5091 AGl1827 SMb21164 BMEII0366 mlr8322 CC0958 CLUSTER 2 AGl1927 SMc04043 BMEII0049 mll3040 CC0743 >COG3745 (Putative duplication confidence score 0.500) CLUSTER 1 PA4305 RSp1089 CLUSTER 2 RSc0656 AGc380 SMa1576 SMc04112 mll0900 mll6480 mlr5595 CC2946 >COG3748 (Putative duplication confidence score 1.000) CLUSTER 1 PA1513 RSc2115 AGc4211 SMb20848 SMb21292 BMEI1572 mlr5140 CC2607 CLUSTER 2 CC1988 >COG3773 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0686_2 CAC1232_2 CAC3081 BS_cwlJ BS_sleB_2 BS_ykvT BH1631_2 BH2879_2 BH3826 AGc1291 SMc00928 BMEI1548 mlr7408 CC2872 CC2967 CLUSTER 2 BMEI1983 mlr5508 >COG3798 (Putative duplication confidence score 1.000) CLUSTER 1 DR1261 msr0083 CC1532 CLUSTER 2 DR1348 >COG3800 (Putative duplication confidence score 0.600) CLUSTER 1 Cgl0365_2 Cgl0678_2 Rv0465c_2 Rv1129c_2 MT0481_2 MT1161_2 AGl2480_2 SMb20754_2 BMEI0802_2 CLUSTER 2 AGc1081_2 SMc00769_2 BMEI0410_2 mlr6529_2 CC1763_2 >COG3802 (Putative duplication confidence score 0.500) CLUSTER 1 PA2216 mll7189 CLUSTER 2 AGc4261 SMb20892 BMEII0354 mll5655 CC1419 >COG3803 (Putative duplication confidence score 1.000) CLUSTER 1 PA2878 RSc2089 AGc189 SMa1626 SMc00282 SMc04178 BMEI0803 mlr0784 CC2122 CLUSTER 2 PA5109 >COG3845 (Putative duplication confidence score 1.000) CLUSTER 1 AF0887 VNG0901G PH1713 PAB0303 PAE3120 PAE3413 APE0063 APE2588 TM0103 DR0957 CAC0703 L165279 SPy1227 SP0846 lin1426 BS_yufO alr5362 PA0136 RSc2173 AGc202 AGc3297 SMa1509 SMa2127 SMa2365 SMb20124 SMc00245 SMc04127 BMEII0085 BMEII0698 mll0504 mll4176 mlr3154 mlr6802 mlr7066 TP0321 BB0677 UU015 MYPU_6190 MPN258 MG119 CLUSTER 2 TP0300 >COG3851 (Putative duplication confidence score 0.667) CLUSTER 1 uhpB ZuhpB ECs4605 STM3789 PM1339 CLUSTER 2 Z0462 ECs0417 VCA0683 >COG3858 (Putative duplication confidence score 1.000) CLUSTER 1 CAC1556 CAC2747 BS_yaaH BS_ydhD BS_ykvQ BS_yvbX BH2292 XF0848 CLUSTER 2 BH0017 BH3513 >COG3862 (Putative duplication confidence score 1.000) CLUSTER 1 PAB0185 TM1434 FN0181 CAC1324 CLUSTER 2 CAC0013 >COG3870 (Putative duplication confidence score 1.000) CLUSTER 1 DR1423 CAC0299 SA0441 lin2840 BS_yaaQ BH0043 CLUSTER 2 BH0950 >COG3878 (Putative duplication confidence score 0.500) CLUSTER 1 FN1221 SA0761 CLUSTER 2 DR2173_2 CAC0820 SAS022 lin2486 lin2487 BS_ywqG >COG3903 (Putative duplication confidence score 0.500) CLUSTER 1 Rv0386_2 Rv0890c_1 Rv0894 Rv1358_2 Rv2488c_2 MT0399_2 MT0914_1 MT0918 MT1402_2 MT2563_2 ML1753_2 mlr6681_2 mlr6873_2 CLUSTER 2 SMa1591_3 SMa1789_3 SMc01491_3 mll0576_3 >COG3914 (Putative duplication confidence score 1.000) CLUSTER 1 slr1816 all0562 AGl1760 CC0119_2 CC1107 CC3718 CLUSTER 2 alr0558_2 >COG3920 (Putative duplication confidence score 0.800) CLUSTER 1 MA0203_4 MA0490_2 MA0551_4 MA0552_2 MA0619_3 MA0620_3 MA0758_2 MA0759_2 MA0970_4 MA1267_3 MA1274_2 MA1322_2 MA1463_2 MA1470_2 MA1627_2 MA1628_4 MA1630_4 MA1645_2 MA1646_4 MA1704_2 MA1844_2 MA1878_3 MA1991_2 MA2082_2 MA2266_4 MA2732_2 MA2757_2 MA2784_2 MA2890_4 MA3346_2 MA3370_3 MA3481_3 MA3543_2 MA4026_2 MTH1124 MTH123 MTH1260 MTH174_3 MTH292 MTH356 MTH360_3 MTH446_3 MTH459 MTH468_3 MTH619_3 MTH823_3 MTH901_2 MTH902_3 MTH985 FN0077 FN1915 CAC2720 Rv3220c MT3316 ML0803 lin1137 slr1212_3 all1280_4 all2095_3 all2239_4 all3347_2 alr5151_2 asr0358 AGc3610_2 AGpA543_2 BMEI0370 mll2301 mlr1749 mlr5739_2 mlr8084_2 mlr9681_2 CC0285_2 CC3198 CC3474 CLUSTER 2 AGc3616_2 AGl1379 AGl1382 AGpA130 AGpA542_2 AGpA788_2 SMa0113_2 SMa1001 SMa1696 SMa2063 SMb20515_4 SMb20933_4 SMc00322 SMc01507_3 BMEI0374 BMEII0679_2 mll1798_2 mll3709_2 mll9598 mll9655_2 mlr3690_3 mlr3704 mlr6761_2 mlr8083 mlr9591_2 mlr9680 CC0629 CC0836_2 CC1683 CC2554 CC2909 CC3048_2 CC3058_2 CC3170_2 CC3560_3 >COG3931 (Putative duplication confidence score 1.000) CLUSTER 1 PA5509 AGc3887 SMc01600 SMc02354 BMEII0555 mll3076 CLUSTER 2 AGl2148 SMc04007 BMEI0290 mlr3822 >COG3937 (Putative duplication confidence score 1.000) CLUSTER 1 MA2622 CAC0034 BH2709 slr0455 all1164 CLUSTER 2 slr0058 alr0576 >COG3938 (Putative duplication confidence score 1.000) CLUSTER 1 PA1255 AGc701 AGl395 SMb20270 BMEI1586 mlr6810 CLUSTER 2 PA1268 AGl1800 SMb20268 BMEI0257 mll3979 >COG3948 (Putative duplication confidence score 1.000) CLUSTER 1 STM2708 PA0618 XF0724 XF2488 RSc1923 CLUSTER 2 STM4202 >COG3950 (Putative duplication confidence score 1.000) CLUSTER 1 STM2746 CLUSTER 2 STM3753 VC2386 SMc02153 >COG3957 (Putative duplication confidence score 1.000) CLUSTER 1 SPBC24C6.09c CAC1343 L138230 slr0453 all1483 all2567 PA3613 SMa1084 SMc04146 BMEII0881 mlr6575 CLUSTER 2 sll0529 alr1850 >COG3961 (Putative duplication confidence score 1.000) CLUSTER 1 MA0594 YDL080c YDR380w YGR087c YLR044c YLR134w SPAC13A11.06 SPAC3G9.11c CAP0025 Rv0853c MT0876 ML2167 L138640 SA0182 STM2405 CLUSTER 2 SPAC186.09 SPAC1F8.07c >COG3964 (Putative duplication confidence score 0.500) CLUSTER 1 STM4413 mll4451 CLUSTER 2 STM4445 AGl3103 >COG3975 (Putative duplication confidence score 0.500) CLUSTER 1 SSO2575 slr0031 alr2326 NMB1726 NMA1981 RSc2890 CC2539 CLUSTER 2 CC3051 CC3287 RC0445 >COG4043 (Putative duplication confidence score 1.000) CLUSTER 1 MK0492_2 PH0355 PAB1060 BH0816 CLUSTER 2 PH0447 PAB1310 >COG4063 (Putative duplication confidence score 1.000) CLUSTER 1 MA0272 MTH1062 MTH1159 MJ0851 MK0660 CLUSTER 2 MA1805 >COG4075 (Putative duplication confidence score 1.000) CLUSTER 1 MTH1110 MJ1244 MK1106 CLUSTER 2 MJ1245 >COG4102 (Putative duplication confidence score 0.500) CLUSTER 1 RSc1651 CC2414 CLUSTER 2 AGl3459 mll5452 CC1979 >COG4103 (Putative duplication confidence score 1.000) CLUSTER 1 VC1379 AGc4817 SMc03235 BMEI0180 mll4217 CLUSTER 2 BMEI0699 mll1192 >COG4115 (Putative duplication confidence score 0.500) CLUSTER 1 Rv3358 MT3466 SP1740 SA2195 asl0171 AGc3658 CLUSTER 2 SA2245 RC0291 >COG4129 (Putative duplication confidence score 1.000) CLUSTER 1 CAC2484 SPy1253 SP1754 SA1344 lin1983 BS_yqjA BH1464 CLUSTER 2 CAC3439 Cgl2711 Rv2571c MT2647 SPy1879 SP0500 SA1682 SA1705 lin1794 BS_ygaE BH0942 BH2644 AGc2137 BMEI1556 >COG4154 (Putative duplication confidence score 0.500) CLUSTER 1 SP2165 fucU ZfucU ECs3664 STM2978 HI0612 SMc02173 mll7581 CLUSTER 2 AGc3656 SMb21302 BMEI0667 mlr8491 >COG4158 (Putative duplication confidence score 1.000) CLUSTER 1 Z5690 ECs5072 YPO3963 PM1378 mll3597 CLUSTER 2 mll3405 >COG4178 (Putative duplication confidence score 1.000) CLUSTER 1 YKL188c YPL147w Rv1819c MT1867 ML2084 sll0182 all2650 alr2663 yddA ZyddA ECs2101 HI0036 HI1467 PM0041 PM1072 NMB1077 RSc0456 AGl1966 AGl3495 SMb20937 BMEI0520 mll3543 mll4764 CLUSTER 2 BMEII0976 mlr0519 >COG4190 (Putative duplication confidence score 0.500) CLUSTER 1 VNG0040C VNG6001H VNG7001 SMc01416 CLUSTER 2 PA2736 SMa2167 >COG4191 (Putative duplication confidence score 1.000) CLUSTER 1 VC1925 VCA0141 PA1336 PA5165 PA5512 RSc0331 RSp0008 AGc174 AGl3043 SMb20612 SMb21201 mlr5841 mlr7238 CLUSTER 2 RSc2432_1 >COG4220 (Putative duplication confidence score 1.000) CLUSTER 1 nohA nohB Z1882 ECs1629 ECs2180 STM2609 XF0710 XF2501 AGc800_2 CLUSTER 2 Z2124 Z2365 ECs1101 ECs1105 ECs2736 >COG4222 (Putative duplication confidence score 1.000) CLUSTER 1 DRB0111_1 all0275_1 CLUSTER 2 DRB0111_3 slr1087 all0275_3 all3208 alr4238_1 alr4238_3 YPO3640 Cj0728 AGc2125 AGc4118 SMc00620 mlr1518 >COG4231 (Putative duplication confidence score 0.667) CLUSTER 1 AF1489 MA1022 MA1727 MA1982 MTH1852 Ta1012 TVN0577 PH0765 PH1138 PAB0718 PAB0855 PAE3477 PAE3478 SSO2067 CAC2001 RSc1829 mlr5448 CLUSTER 2 RSc3122_1 mlr5175_1 CC3176_1 >COG4242 (Putative duplication confidence score 1.000) CLUSTER 1 slr2001 all0571 all3880 CC0577 CLUSTER 2 all2506 >COG4244 (Putative duplication confidence score 0.500) CLUSTER 1 aq_811 all3197 PA2415 SMb21357 SMb21365 mll6613 CLUSTER 2 sll1485 sll1486 alr2729 alr2730 >COG4249 (Putative duplication confidence score 1.000) CLUSTER 1 all0283_1 all0284_1 all2124_1 all3226_1 all5017 alr3676_1 XF2779_3 mlr3303_2 CLUSTER 2 mll2372 mll5190_1 mlr1170_1 mlr1804_1 mlr2366 mlr3463 mlr7482 >COG4251 (Putative duplication confidence score 0.500) CLUSTER 1 DRA0050 slr0473 all2899 alr3157 AGc3620 CLUSTER 2 PA4117 AGc3927_1 >COG4257 (Putative duplication confidence score 1.000) CLUSTER 1 sll0173 PA0468 RSp0135 CLUSTER 2 RSc3155 >COG4258 (Putative duplication confidence score 0.500) CLUSTER 1 Z4861 ECs4336 RSp0362 CLUSTER 2 XF0777 RSc0429 >COG4261 (Putative duplication confidence score 0.500) CLUSTER 1 Z4858_2 ECs4333_2 RSp0366_2 CLUSTER 2 XF0775 RSc0431 >COG4263 (Putative duplication confidence score 0.500) CLUSTER 1 PA3392 RSp1368 BMEII0973 CLUSTER 2 SMa1182 BMEII0974 >COG4264 (Putative duplication confidence score 1.000) CLUSTER 1 VNG6212G SA0116 SA1981 SA1983 BH2622 all0394 RSp0421 SMa2404 CLUSTER 2 VNG6216G SA0114 SA0117 BH2618 all0390 YPO0992 YPO1532 YPO1538 RSp0419 RSp0422 SMa2410 >COG4275 (Putative duplication confidence score 1.000) CLUSTER 1 TVN1199 RSp0556 SMc00911_2 mlr5406_2 CLUSTER 2 RSp0554 >COG4284 (Putative duplication confidence score 0.750) CLUSTER 1 YDL103c SPBC1289.08 ECU11g1780 SA1974 CT715 CPn0856 CLUSTER 2 YHL012w YKL035w SPCC1322.04 SPCC794.10 ECU03g0280 BB0003 >COG4311 (Putative duplication confidence score 0.750) CLUSTER 1 PA5417 RSc1102 RSp0047 AGl1276 SMc02607 msl5231 msl6239 msl7305 msr1274 CLUSTER 2 AGl1105 AGl1575 SMc03932 BMEI1721 msl3109 >COG4312 (Putative duplication confidence score 1.000) CLUSTER 1 PA1350 RSc1113 AGc1560 SMb21565 SMc00803 mll1876 mlr1911 mlr3755 CLUSTER 2 SMc01408 mll2522 >COG4321 (Putative duplication confidence score 0.500) CLUSTER 1 PA4335 RSc0415 AGl852 BMEI0792 CLUSTER 2 AGc3716 SMc01452 BMEI0601 mll6467 msr1476 >COG4335 (Putative duplication confidence score 1.000) CLUSTER 1 BS_yhaZ PM1750 AGl2657 CLUSTER 2 AGl2659 >COG4341 (Putative duplication confidence score 1.000) CLUSTER 1 all2220 PA2804 RSc3336 mll1439 CLUSTER 2 mlr5040 >COG4383 (Putative duplication confidence score 0.500) CLUSTER 1 ECs4970 HI1501 CLUSTER 2 HI1571 NMB1095 NMA1314 NMA1851 >COG4395 (Putative duplication confidence score 0.571) CLUSTER 1 VC1964 PA5528 RSc0459 AGl2266 SMc04202 BMEI0729 mll7160 CLUSTER 2 AGc12 SMc02786 BMEI2053 mlr4544 CC3741 RP434 RC0604 >COG4403 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0082 SPy1914 SP1950 BH0452 BH0455 all2025 CLUSTER 2 SP0380 >COG4451 (Putative duplication confidence score 0.667) CLUSTER 1 sll1031_2 all0865_2 alr1533_2 CLUSTER 2 slr0012 alr1526 SMb20197 >COG4453 (Putative duplication confidence score 0.714) CLUSTER 1 Rv0918 MT0944 Z4776 ECs4261 STM3652 STM4317 XFa0024 SMc00740 CLUSTER 2 MT2871 Z4833 ECs4308 STM2904 VCA0319 VCA0482 HI0420 RSp1627 SMc04222 >COG4461 (Putative duplication confidence score 1.000) CLUSTER 1 Rv1541c MT1593 YPO2684 STM1236 PA1114 AGc3508 mlr0530 CLUSTER 2 YPO0702 >COG4465 (Putative duplication confidence score 1.000) CLUSTER 1 CAC1786 L0243 SPy1777 SP1584 SA1098 lin1319 BS_codY BH2462 CLUSTER 2 L0244 >COG4473 (Putative duplication confidence score 1.000) CLUSTER 1 L57113 SPy1728 SP0523 SA1654 lin2317 BS_ecsB BH1192 CLUSTER 2 BS_ythQ >COG4474 (Putative duplication confidence score 1.000) CLUSTER 1 L131937 SPy1647 SP0371 SA1280 lin2003 BS_ypsA BH1768 CLUSTER 2 BS_yoqJ >COG4533 (Putative duplication confidence score 1.000) CLUSTER 1 DRB0042 lin2150 BS_yhjP BH1159 yabN ZyabN ECs0074 YPO0524 STM0109 STM2759 STM3860 VC1647 VCA0578 CLUSTER 2 ybaE ZybaE ECs0499 YPO3149 STM0456 >COG4577 (Putative duplication confidence score 1.000) CLUSTER 1 FN0082 FN0083 lin1115 lin1122 lin1123 lin1142 lin1144 sll1028 sll1029 slr0436 slr1838 slr1839 all0863 all0867 all0868 alr0317 alr0318 cchA eutK Z3703 ZcchA ECs3309 ECs3319 STM2038 STM2045 STM2046 STM2455 STM2465 CLUSTER 2 lin1107 lin1149 STM2054 >COG4581 (Putative duplication confidence score 1.000) CLUSTER 1 YJL050w YLR398c SPAC17H9.02 SPAC6F12.16c SPCC550.03c ECU04g0910 ECU04g1290 Cgl1453 Cgl1878 Rv2092c MT2153 ML1333 slr0451 alr0489 CLUSTER 2 SPAC694.02 ECU05g0940 >COG4585 (Putative duplication confidence score 1.000) CLUSTER 1 DR0577 DR1227_2 DR1556 DRA0009 CAC0239 CAC0864 CAC1454 CAC2253 CAC2940 CAC3430 Cgl0594 Cgl0924 Cgl1964 Cgl2871 Rv0845 Rv2027c_2 Rv3132c_2 MT0867 MT2086_2 MT3218_2 L0126 SPy1622 SP0386 SP2001 SA1158 SA1667_2 SA1701 SA2180 lin1020 BS_comP BS_degS BS_ydfH BS_yfiJ BS_yhcY_2 BS_yocF BS_yvfT BS_yvqE BS_yxjM BH0582 BH0784 BH1050 BH1199 BH2096 BH2214_2 BH3629 slr0311_3 all4636 alr2137_3 PA0600_3 PA1979 RSc0191_2 RSc0289_2 RSc2311_2 RSc3160 AGl1636 SMa0204 SMb20077 SMb20467 SMb21519 mll4568 CC1149 CLUSTER 2 Cgl2706 >COG4588 (Putative duplication confidence score 1.000) CLUSTER 1 Z2053 ECs1772 VC0841 Cj0289c SMc02156 CLUSTER 2 Cj0778 >COG4598 (Putative duplication confidence score 1.000) CLUSTER 1 hisP ZhisP ECs3190 YPO2777 STM2351 VC1864 PA0892 PA2926 PA5152 AGc4296 SMc02260 mll5204 CLUSTER 2 AGpT69 >COG4603 (Putative duplication confidence score 1.000) CLUSTER 1 AF0888 VNG0898G PH1712 PAB0304 PAE3119 PAE3412 APE0065 APE2587 TM0104 DR0250_2 CAC0704 L166804 SPy1226 SP0847 lin1427 BS_yufP alr5367 PA0137 RSc2174 AGc205 AGc3295 SMa1513 SMa2125 SMa2367 SMb20126 SMc00243 SMc04126 BMEII0086 BMEII0699 BMEII0700 mll0503 mll4175 mlr3155 mlr6803 mlr7062 TP0301 TP0322 BB0678 UU014_1 MYPU_6180 MPN259 MG120 CLUSTER 2 BB0317 >COG4608 (Putative duplication confidence score 1.000) CLUSTER 1 AF1771 VNG2343G VNG2365G VNG2526G_2 MA0298 MA0697 MA0878 MA1244 MA2474 MA2478 MA3047 MA3456 MA3465 MA3909 MA4253 MA4597 Ta0266 Ta1326 TVN1328 PH0507 PH0811 PH1413 PH1958 PAB0095 PAB0631 PAB1197 PAB1347 PAB1875 PAE1296 PAE3316 SSO1277 SSO1279 SSO1281 SSO2615 SSO2672 SSO3045 APE0300 APE1402 APE1576 APE2263 aq_2122 TM0027 TM0057 TM0075 TM0304 TM0500 TM0530 TM1063 TM1151 TM1196 TM1219 TM1750 FN0400 FN1109 FN1363 FN1525 FN1648 DR1567 CAC0180 CAC3183 CAC3628 CAC3635 CAC3641 Cgl2602 L150031 L92192 SPy0297 SP1887 SA0848 SA0852 SA1211 lin2296 BS_appF BS_oppF BS_ykfD BH0027 BH0351 BH0571 BH1800 BH3639 BH3645 dppF oppF ZdppF ZoppF ECs1747 ECs4420 YPO2186 YPO3999 STM1742 STM3626 VC0616 VC1095 PA4506 HI1120 HI1184 PM0240 PM1906 RSc1885 RSc2866 HP0302 jhp0287 Cj1580c AGc2214 AGl1474 AGl2779 AGl3198 AGl359 AGpA367 AGpT260 SMa0110 SMa1370 SMa1646 SMa2079 SMb20479 SMc00790 SMc02424 SMc03126 BMEI0438 BMEII0199 BMEII0205 BMEII0223 BMEII0288 BMEII0508 BMEII0864 mll0595 mll5436 mll9145 mlr3401 mlr5420 mlr5895 mlr6086 mlr9271 CT689 CPn0683 BB0335 MYPU_2860_1 MYPU_2860_3 MPN218_1 MPN218_3 MG080_1 MG080_3 CLUSTER 2 MYPU_2560_2 >COG4623 (Putative duplication confidence score 1.000) CLUSTER 1 yfhD ZyfhD ECs3424 YPO2922 STM2567 VC0866 PA3764 HI0232 PM0045 CLUSTER 2 PA2865 >COG4628 (Putative duplication confidence score 1.000) CLUSTER 1 DR0127_1 YPO1157 VC1816 CLUSTER 2 VC1100 >COG4637 (Putative duplication confidence score 1.000) CLUSTER 1 all3132 all8080 PA0787 SMc02491 CLUSTER 2 alr0507 >COG4648 (Putative duplication confidence score 1.000) CLUSTER 1 Z4855 ECs4330 NMA1954 RSp0368 CLUSTER 2 RSc0433 >COG4652 (Putative duplication confidence score 0.500) CLUSTER 1 L13272 SA0886 SAP020 BH0280 CLUSTER 2 L80344 SP0686 SP1956 SP1988 >COG4663 (Putative duplication confidence score 0.500) CLUSTER 1 slr1962 all3028 AGc426 AGl2908 AGpA385 SMc04251 BMEI1579 mlr5166 CLUSTER 2 VC0488 VC1273 SMc04289 >COG4664 (Putative duplication confidence score 1.000) CLUSTER 1 sll1103 alr3027 VC1275 AGl2910 AGpA387 SMc04249 BMEI1580 mll5170 CLUSTER 2 SMc04283 >COG4665 (Putative duplication confidence score 1.000) CLUSTER 1 sll1102 alr3026 VC1274 AGl2913 AGpA389 SMc04248 BMEI1581 mll5171 CLUSTER 2 SMc04287 >COG4666 (Putative duplication confidence score 1.000) CLUSTER 1 AF0466 AF0636 AF0989 VNG0537C APE2133 APE2542 DR1653 BH0602 BH2938 BH2945 VC0429 VCA0146 PA5544 PM0473 PM1580 SMb20291 BMEI0797 CLUSTER 2 DR1650 >COG4668 (Putative duplication confidence score 0.500) CLUSTER 1 DRB0075_1 CAC0156 L32907 SP0396 SA1962 BS_mtlA_2 BH3852 fruB_1 mtlA_2 ZfruB_1 ZmtlA_2 ECs3061_1 ECs4475_2 YPO1298_1 YPO4068_2 STM2206_1 STM3256_1 STM3685_2 BU572_2 VCA0518_1 VCA1045_2 PA3562_1 HI0448_1 PM1061_2 PM1797_1 RSc2861_1 MPN653 CLUSTER 2 lin0425_2 STM4448_2 >COG4671 (Putative duplication confidence score 1.000) CLUSTER 1 sll1722 all5196 alr5197 AGc4693 SMb21264 mlr3248 CLUSTER 2 alr5198 AGc4697 SMb21266 mlr3252 >COG4676 (Putative duplication confidence score 1.000) CLUSTER 1 yfaP Z3478 ECs3108 PA4487 RSc3027 CLUSTER 2 PA4492 RSc3028 >COG4678 (Putative duplication confidence score 0.500) CLUSTER 1 slr0795 slr1966 alr2752 CLUSTER 2 all7671 Z1876 ECs1622 RSc1700 >COG4682 (Putative duplication confidence score 0.750) CLUSTER 1 BS_yubF yiaA ZyiaA ECs4445 YPO0112 RSc0141 CLUSTER 2 yiaB ZyiaB ECs4446 STM3659 >COG4697 (Putative duplication confidence score 1.000) CLUSTER 1 PH0222 PAB0137 SSO3037 APE0560 CLUSTER 2 SSO3038 >COG4705 (Putative duplication confidence score 0.500) CLUSTER 1 all7626 RSc3405 CLUSTER 2 RSp0114 mlr4456 >COG4722 (Putative duplication confidence score 0.500) CLUSTER 1 CAC0062 L63101 SPy0698 SPy1447 lin2567 BS_yomH CLUSTER 2 SPy0995 BH0013 BH0961 BH3517 >COG4750 (Putative duplication confidence score 0.500) CLUSTER 1 FN1237_1 SP1267 HI1539 CLUSTER 2 FN1668 TP0107_1 >COG4759 (Putative duplication confidence score 0.500) CLUSTER 1 Cgl0602 all1981 alr2582 alr2589 CLUSTER 2 sll1203 all2608 all2617 alr2187 alr2660 >COG4767 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0652 CAC0829 CAC1444 Cgl2952 Cgl2953 L188881 L98876 SP0049 SP0769 lin0486 lin1455 lin1804 lin1900 BH2294 CLUSTER 2 BH3967 >COG4770 (Putative duplication confidence score 0.714) CLUSTER 1 VNG1532G Cgl0680 Rv2501c Rv3285 MT2576 MT3384 ML0726 PA2012 PA2891 RSc0265 AGl1864 AGl2704 SMb21124 BMEI1925 mll6011 mll7727 CC2168 CLUSTER 2 AGl580GM SMb20756 BMEI0800 mll0871 CC2179 RP618 RC0959 >COG4771 (Putative duplication confidence score 1.000) CLUSTER 1 cirA Z1178 Z1617 ZcirA ECs1360 ECs3047 YPO1313 STM2199 VC0475 PA1922 Cj0755 AGl1858 CLUSTER 2 fepA ZfepA ECs0623 STM0585 STM2777 PA0931 PA2688 >COG4773 (Putative duplication confidence score 1.000) CLUSTER 1 fhuE ZfhuE ECs1480 YPO1537 STM1204 PA2398 PA4168 PA4221 NMB1829 NMB1882 NMA0575 NMA1662 CLUSTER 2 NMA1663 >COG4789 (Putative duplication confidence score 1.000) CLUSTER 1 Z4195 ECs3731 STM2896 CLUSTER 2 ZescV ECs4569 YPCD1.34c YPO0266 STM1414 PA1703 RSp0863 mlr6348 CT090 CPn0323 >COG4790 (Putative duplication confidence score 1.000) CLUSTER 1 Z4189 ECs3725 STM2890 CLUSTER 2 ZescR ECs4583 YPCD1.44 YPO0270 STM1419 PA1693 RSp0860 mlr8766 >COG4798 (Putative duplication confidence score 0.500) CLUSTER 1 alr7345 asr7339 CC2257 CLUSTER 2 mlr5283 msl1894 CC1026 CC1353 >COG4804 (Putative duplication confidence score 1.000) CLUSTER 1 MA2412 MA2994 FN1448 yhcG ZyhcG ECs4093 STM3332 RSc2621 RC0365 RC0366 RC0740 CLUSTER 2 RC0367 RC0739 >COG4809 (Putative duplication confidence score 1.000) CLUSTER 1 MA3562 CLUSTER 2 MA3563 MJ1604 PH0589 PH1645 PAB0967 PAB2013 >COG4816 (Putative duplication confidence score 1.000) CLUSTER 1 FN0081 lin1141 eutL Z3704 ECs3310 STM2456 CLUSTER 2 lin1116 STM2039 >COG4855 (Putative duplication confidence score 1.000) CLUSTER 1 AF1427 MA3734 MTH102 CLUSTER 2 MA3735 >COG4869 (Putative duplication confidence score 0.500) CLUSTER 1 TM0375 lin1146 CLUSTER 2 lin1124 STM2047 >COG4878 (Putative duplication confidence score 1.000) CLUSTER 1 TM1409 FN0381 CAC0733 CLUSTER 2 FN0380 >COG4889 (Putative duplication confidence score 1.000) CLUSTER 1 Cgl3009 Rv2024c MT2082 pli0021 HP0668 jhp0612 CLUSTER 2 HP0669 jhp0613 >COG4891 (Putative duplication confidence score 1.000) CLUSTER 1 MA3620 DR0722 Cgl1266 Cgl1268 CC0461 CLUSTER 2 DR0721 >COG4917 (Putative duplication confidence score 0.750) CLUSTER 1 FN0075 lin1109 Z3167 ECs2808 STM2056 CLUSTER 2 eutP Z3717 ECs3323 STM2469 >COG4926 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0063 L63739_1 SPy0700_1 lin2566 CLUSTER 2 SPy1446_1 >COG4928 (Putative duplication confidence score 0.667) CLUSTER 1 MJ0182 TM0615 DRC0009 all7130_2 STM2238 AGpA30 CLUSTER 2 TM1189 Cgl1683 all7133 >COG4941 (Putative duplication confidence score 0.667) CLUSTER 1 PA1351 RSp0636 mll7837 mlr2588 mlr4613 CC0389 CLUSTER 2 SMc01150 mll2869 CC1329_2 >COG4943 (Putative duplication confidence score 1.000) CLUSTER 1 yjcC ZyjcC ECs5043 STM4264 CLUSTER 2 ylaB ZylaB ECs0510 STM0468 PA2200_2 XF0470 BMEI1448 BMEII0904 >COG4968 (Putative duplication confidence score 1.000) CLUSTER 1 VC0857 PA4556 XF0033 XF0479 NMB0547 NMA0726 RSc0717 RSc0723 RSc2680 RSp1287 CLUSTER 2 NMB2016 NMA0424 >COG4969 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1433 aq_1434 ppdD ZppdD ECs0112 YPO3425 STM0144 VC2423 PA0659_3 PA4525 HI0299 PM0084 XF0487 XF0538 XF0539 XF1791 XF1792 XF2539 XF2542 NMB0890 NMA1110 RSc0557 RSc0558 CLUSTER 2 NMB0018 NMB0019 NMB0020 NMB0021 NMB0022 NMB0023 NMB0024 NMB0025 NMB0026 NMA0264 NMA0265 NMA0266 NMA0267 NMA0268 NMA0269 NMA0270 NMA0271 NMA0272 >COG4976 (Putative duplication confidence score 0.667) CLUSTER 1 AGc3455 SMc00134 BMEI0923 CC2448 CLUSTER 2 AGc866 SMc02241 mlr5485 >COG4977 (Putative duplication confidence score 0.571) CLUSTER 1 Z0442 Z2164 ECs0399 ECs2143 PA1850 PA3782 PA4436 AGc453 AGl2735 AGpA562 SMa1725 SMb20055 SMb20215 mll3844 mll5195 mlr2766 CC2960 CC3367 CLUSTER 2 PA0893 PA4184 PA5380 PA5389 RSc1098 RSc1108 RSp0044 RSp0054 RSp0068 AGc3247 AGl1109 AGl1272 AGpAbx241 SMa1476 SMc00256 SMc01636 SMc02609 SMc04169 BMEI0685 BMEI1615 mll2026 mll4501 mll5038 mll6236 mlr1251 mlr6241 mlr6509 >COG4978 (Putative duplication confidence score 1.000) CLUSTER 1 MA0499 MA0516 MA0733 MA0989_2 MTH1066 MTH628 PAE1796 CAC3443_2 Cgl1396 Cgl1893 BS_bltR_2 BS_bmrR_2 BS_ydfL_2 BH3496_2 BH4047 all0345_2 CLUSTER 2 MA0732 >COG4988 (Putative duplication confidence score 0.600) CLUSTER 1 FN1819 SPy1791 lin1097 HI0663m PM1474 CLUSTER 2 Cgl1123 Rv1621c MT1657 L110479 SA0639 lin2864 BS_cydC BH3971 cydD ZcydD ECs0972 YPO1373 STM0957 VC1181 HI1157 PM0572 AGl1532 BMEII0762 CC0761 >COG4993 (Putative duplication confidence score 1.000) CLUSTER 1 gcd Zgcd ECs0128 STM0169 PA2290 AGl1436 AGl2936 SMc00110 mll1500 CLUSTER 2 PA1982 SMb20173 >COG4995 (Putative duplication confidence score 1.000) CLUSTER 1 sll0499_2 sll0638 slr0380 slr1753_3 slr1968_2 all0360 all1176_2 all1820_2 all2170_2 all4078_2 all4926_3 all5311_2 all7234_2 alr1398_2 alr7318_2 CC0601 CLUSTER 2 alr0963_2 >COG5005 (Putative duplication confidence score 0.500) CLUSTER 1 ECs4972 HI1503 CLUSTER 2 HI1568 NMA1316 NMA1849 >COG5006 (Putative duplication confidence score 1.000) CLUSTER 1 DR1295 Cgl0589 ybiF ZybiF ECs0891 YPO2507 STM0832 VC1311 PA1360 RSc2802 mll1936 CC3468 CLUSTER 2 Cgl2095 mlr1493 >COG5008 (Putative duplication confidence score 1.000) CLUSTER 1 VC0463 PA0396 XF1632 NMB0768 NMA0979 RSc2681 CLUSTER 2 NMB0051 NMA0219 >COG5020 (Putative duplication confidence score 1.000) CLUSTER 1 YBR199w YBR205w YDR483w YIL085c YJL139c YKR061w YNL029c YOR099w YPL053c SPBC16H5.09c SPBC1773.08c SPBC19C7.12c SPBC32H8.08c SPCC777.07 ECU04g1130 CLUSTER 2 SPAC959.04c >COG5022 (Putative duplication confidence score 1.000) CLUSTER 1 YAL029c YHR023w YOR326w SPAC4A8.05c SPBC2D10.14c SPCC1919.10c SPCC645.05c ECU04g1000 ECU09g1970 CLUSTER 2 YKL129c YMR109w SPBC146.13c >COG5023 (Putative duplication confidence score 1.000) CLUSTER 1 YFL037w YML085c YML124c SPBC16A3.15c SPBC26H8.07c SPBC800.05c ECU03g0820i ECU07g1190 CLUSTER 2 YLR212c SPBC32F12.04 ECU08g0670 >COG5024 (Putative duplication confidence score 1.000) CLUSTER 1 YAL040c YMR199w YPL256c CLUSTER 2 YDL155w YGR108w YGR109c YLR210w YPR119w YPR120c SPAPB2B4.03 SPBC16E9.17c SPBC19F5.01c SPBC582.03 SPCC4E9.02 ECU08g0260 ECU09g1030 >COG5027 (Putative duplication confidence score 1.000) CLUSTER 1 YBL052c YOR244w SPAC17G8.13c SPAC637.12c ECU09g1310 ECU10g0660 CLUSTER 2 YMR127c >COG5028 (Putative duplication confidence score 1.000) CLUSTER 1 YHR098c YIL109c YNL049c SPAC22F8.08 SPBC4.03c ECU02g1230 CLUSTER 2 ECU02g1460 >COG5029 (Putative duplication confidence score 1.000) CLUSTER 1 YDL090c YPR176c SPAC167.02 SPAC17G6.04c ECU08g1290 CLUSTER 2 YGL155w SPAC2E1P5.04c >COG5032 (Putative duplication confidence score 1.000) CLUSTER 1 YBL088c YBR136w YHR099w YJR066w YKL203c YLR240w YLR305c YNL267w SPAC1F5.11c SPAC22E12.16c SPAC458.05 SPBC216.05 SPBC216.07c SPBC30D10.10c SPBC577.06c SPBP16F5.03c SPCC23B6.03c ECU02g1130 ECU03g1100 ECU10g0590 ECU11g0450 CLUSTER 2 ECU05g0540 >COG5033 (Putative duplication confidence score 1.000) CLUSTER 1 YNL107w SPAC17G8.07 ECU03g1600 CLUSTER 2 YOR213c YPL129w SPAC22H12.02 >COG5036 (Putative duplication confidence score 0.667) CLUSTER 1 YFL004w_1 YPL019c_1 SPAC14C4.11_1 CLUSTER 2 YJL012c SPCC1322.14c_1 ECU06g1420i_1 >COG5038 (Putative duplication confidence score 1.000) CLUSTER 1 YML072c YNL087w YOR086c SPAPYUK71.03c SPCC962.01 ECU01g1250 CLUSTER 2 SPCP31B10.06 >COG5039 (Putative duplication confidence score 0.500) CLUSTER 1 SPAC8F11.10c BS_yveS BS_yxaB CLUSTER 2 BS_yvfF all3271 alr3066 >COG5044 (Putative duplication confidence score 1.000) CLUSTER 1 YER136w YOR370c SPAC22H10.12c SPBC15C4.03 ECU02g1410 CLUSTER 2 ECU11g0350 >COG5047 (Putative duplication confidence score 1.000) CLUSTER 1 YHR035w CLUSTER 2 YPR181c SPBC776.04 SPCC31H12.07 ECU11g0790 >COG5049 (Putative duplication confidence score 1.000) CLUSTER 1 YGL173c SPAC17A5.14 CLUSTER 2 YOR048c SPAC26A3.12c ECU09g0760 >COG5052 (Putative duplication confidence score 1.000) CLUSTER 1 YPR028w SPBC30D10.09c SPCC830.08c ECU09g1950 CLUSTER 2 ECU05g1180 >COG5053 (Putative duplication confidence score 1.000) CLUSTER 1 YOL139c SPAC16E8.15 SPBC1709.18 ECU08g0900 CLUSTER 2 ECU11g1350 >COG5055 (Putative duplication confidence score 1.000) CLUSTER 1 YDL059c CLUSTER 2 YML032c SPAC30D11.10 SPBC119.14 ECU09g0930 >COG5057 (Putative duplication confidence score 1.000) CLUSTER 1 YIL153w SPAC4F10.04 ECU06g0720 CLUSTER 2 YPL152w SPAC1782.05 >COG5059 (Putative duplication confidence score 1.000) CLUSTER 1 YBL063w YEL061c YGL216w YKL079w YPL155c SPAC144.14 SPAC1834.07 SPAC25G10.07c SPBC15D4.01c SPBC1604.20c SPBC2D10.21c SPBC2F12.13 SPBC649.01c ECU05g0060_1 ECU08g0890 ECU10g1000 ECU11g0470 ECU11g2020 CLUSTER 2 YPR141c SPAC3A11.14c SPAC664.10 ECU10g0320 >COG5068 (Putative duplication confidence score 0.667) CLUSTER 1 YBR182c YPL089c SPBC19G7.06 SPBC317.01 CLUSTER 2 YMR042w YMR043w SPAC11E3.06 ECU07g1740 >COG5069 (Putative duplication confidence score 0.500) CLUSTER 1 YDR129c SPBC1778.06c CLUSTER 2 SPAC15A10.08 ECU09g0290 >COG5073 (Putative duplication confidence score 1.000) CLUSTER 1 YBR105c YGR066c SPAC3H1.14 ECU03g0570 CLUSTER 2 SPAP8A3.13c >COG5076 (Putative duplication confidence score 1.000) CLUSTER 1 YBR081c YDL070w YGR056w YGR252w YIL126w_2 YKR008w YLR357w YLR399c YOR290c_2 SPAC1250.01_2 SPAC1952.05 SPAC631.02 SPBC1734.15 SPBC25H2.11c SPBC4B4.03 SPCC1620.14c_2 ECU08g1560 ECU08g1640 ECU10g0760_2 ECU10g1430 CLUSTER 2 SPBC21D10.10 >COG5080 (Putative duplication confidence score 1.000) CLUSTER 1 YGL198w CLUSTER 2 YGR172c SPAC644.13c SPCC61.04c ECU03g0590 >COG5096 (Putative duplication confidence score 1.000) CLUSTER 1 YDR238c SPBC146.14c ECU08g1100 CLUSTER 2 YGR261c YJR005w YKL135c SPAC23H3.06 SPBC2G2.06c SPBC947.02 ECU06g0770 >COG5099 (Putative duplication confidence score 1.000) CLUSTER 1 YGL014w YJR091c YLL013c YPR042c SPAC1687.22c SPAC4G8.03c SPAC4G9.05 SPAC6G9.14 SPBC56F2.08c SPBP35G2.14 SPCC1682.08c ECU11g1730 CLUSTER 2 YGL178w >COG5147 (Putative duplication confidence score 1.000) CLUSTER 1 YBR049c YDR026c SPAC22F8.07c SPBC1198.11c ECU06g1020 CLUSTER 2 YKR099w YMR213w SPAC644.12 ECU02g0420 ECU11g1690 >COG5158 (Putative duplication confidence score 1.000) CLUSTER 1 YDR164c YDR189w YGL095c SPAC2G11.03c SPCC584.05 SPCC74.01 ECU02g0430 ECU03g0900 ECU06g1460 CLUSTER 2 YLR396c SPBC1703.15c >COG5160 (Putative duplication confidence score 1.000) CLUSTER 1 YIL031w SPAC17A5.07c CLUSTER 2 YPL020c SPBC19G7.09 ECU05g0760 >COG5184 (Putative duplication confidence score 1.000) CLUSTER 1 YAL020c YGL097w SPAC10F6.04 SPBC557.03c SPCC330.11_2 ECU04g1500 CAC2722 CLUSTER 2 YLR077w >COG5190 (Putative duplication confidence score 1.000) CLUSTER 1 YHR004c YLL010c YLR019w SPAC2F7.02c SPBC3B8.10c ECU10g1270 CLUSTER 2 YMR277w YPL063w SPAC19B12.05c SPBC17A3.01c ECU07g0890 ECU10g0580 >COG5193 (Putative duplication confidence score 0.667) CLUSTER 1 YCL037c YDR515w SPAC1527.03 CLUSTER 2 YDL051w SPAC57A10.10c ECU09g0680 >COG5194 (Putative duplication confidence score 1.000) CLUSTER 1 YDL008w SPAC343.03 CLUSTER 2 YOL133w SPAC23H4.18c ECU01g1095 >COG5239 (Putative duplication confidence score 1.000) CLUSTER 1 YAL021c_2 YOL042w SPCC31H12.08c_2 ECU11g0770_2 CLUSTER 2 YML118w YMR285c SPBC9B6.11c >COG5253 (Putative duplication confidence score 1.000) CLUSTER 1 YDR208w SPAC19G12.14 ECU03g0330 CLUSTER 2 YFR019w_3 SPBC6B1.11c >COG5256 (Putative duplication confidence score 1.000) CLUSTER 1 AF0937 VNG2649G MA1256 MTH1058 MJ0324 MK0247 Ta0444 TVN1051 PH1484 PAB0465 PAE3000 SSO0216 APE1844 YBR118w YDR172w_2 YKR084c YPR080w SPAC23A1.10 SPBC2G5.08 SPBC839.15c SPCC584.04 SPCC794.09c ECU04g1100 ECU06g1440 CLUSTER 2 YOR076c SPAP8A3.05 >COG5260 (Putative duplication confidence score 1.000) CLUSTER 1 YNL299w YOL115w SPAC12G12.13c SPAC19D5.03 SPAC821.04c SPBC1685.06 SPCC663.12 ECU06g1520 CLUSTER 2 SPAC17H9.01 >COG5261 (Putative duplication confidence score 1.000) CLUSTER 1 YPL242c SPAC4F8.13c ECU10g1740 CLUSTER 2 SPBC646.12c >COG5264 (Putative duplication confidence score 1.000) CLUSTER 1 YER072w YJL012c-a SPAC14C4.11_2 SPBC21B10.04c SPCC1322.14c_2 ECU06g1420i_2 CLUSTER 2 YFL004w_2 YPL019c_2 >COG5265 (Putative duplication confidence score 1.000) CLUSTER 1 YMR301c SPAC15A10.01 SPCC737.09c YPO2588 RSc0478 AGc1966 SMc00550 BMEI1492 mlr7818 CC1314 RP205 RC0268 RC0269 RC0270 RC0271 CLUSTER 2 SPCC74.01c >COG5267 (Putative duplication confidence score 1.000) CLUSTER 1 RSc1650 AGl3457 mll5453 CC1978 CLUSTER 2 CC2415 >COG5274 (Putative duplication confidence score 0.667) CLUSTER 1 YGL055w_2 YMR272c_1 YNL111c SPAC19G12.08_1 SPBC29A10.16c SPCC1281.06c_2 SPCC16A11.10c CLUSTER 2 YML054c_1 YMR073c SPAC1F12.10 SPCC330.03c ECU01g1115 >COG5282 (Putative duplication confidence score 0.667) CLUSTER 1 VNG1497C Rv3626c MT3728 CLUSTER 2 Cgl0758 Rv3195 MT3287 ML0642 >COG5294 (Putative duplication confidence score 1.000) CLUSTER 1 L106083 L177221 L193090 SA0358 lin2533 BS_yxeA CLUSTER 2 SA0887 SAP021 >COG5316 (Putative duplication confidence score 1.000) CLUSTER 1 MA1196 DR0969 DR1924 CC1037 CC1038 CLUSTER 2 DR1923 >COG5325 (Putative duplication confidence score 1.000) CLUSTER 1 YOL018c SPAC823.05c ECU05g1220 CLUSTER 2 YOR036w YOR106w SPBC31E1.04 >COG5330 (Putative duplication confidence score 0.500) CLUSTER 1 AGc1683 SMc00120 BMEI1354 mll7653 CLUSTER 2 AGc3197 SMc01015 CC0948 CC2323 CC2637 >COG5343 (Putative duplication confidence score 1.000) CLUSTER 1 RSc2362 AGc3608 SMc01725 mll4823 CLUSTER 2 AGc840 >COG5349 (Putative duplication confidence score 1.000) CLUSTER 1 AGc1409 SMc00014 SMc01488 BMEI1461 mlr7498 CC3115 CC3401 CLUSTER 2 AGc2394 SMc01366 BMEII0664 mlr0842 CC1021 >COG5352 (Putative duplication confidence score 1.000) CLUSTER 1 SMc02139 BMEI1623 mll5645 CC2245 CLUSTER 2 CC1211 >COG5354 (Putative duplication confidence score 1.000) CLUSTER 1 YGR054w SPBC4B4.04 ECU11g0670 CLUSTER 2 YOR361c_2 SPAC25G10.08_2 >COG5371 (Putative duplication confidence score 1.000) CLUSTER 1 YEL042w SPAC824.08 ECU07g1260 CLUSTER 2 YER005w SPCC11E10.05c >COG5383 (Putative duplication confidence score 0.500) CLUSTER 1 Rv3292 MT3391 Z2296 ECs2028 YPO1397 STM1624 SMc04383 BMEII0389 CLUSTER 2 ydcJ Z2297 Z2298 >COG5386 (Putative duplication confidence score 1.000) CLUSTER 1 SA0977 CLUSTER 2 SA0978 lin2289 lin2290 BH3298 BH3299 >COG5391 (Putative duplication confidence score 1.000) CLUSTER 1 YDL113c YDR425w YJL036w YMR004w YOR357c SPAC6F6.12 SPBC14F5.11c SPBC1711.11 SPBC887.06c SPCC16A11.08 SPCPJ732.01 ECU05g0840 CLUSTER 2 SPAC3A11.06 >COG5405 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1671 TM0521 SA1096 lin1317 BS_clpQ BH2464 hslV ZhslV ECs4859 YPO0106 STM4092 BU578 VC2675 PA5053 HI0496 PM1749 XF1484 RSc0043 HP0515 jhp0464 Cj0663c AGc70 SMc02575 BMEI2047 mll5007 CC3727 RP319 RC0433 BB0296 CLUSTER 2 RSc1602 >COG5411 (Putative duplication confidence score 1.000) CLUSTER 1 YIL002c_2 YNL106c_2 YOL065c YOR109w_2 SPBC2G2.02_2 SPBC577.13_2 ECU10g1370 CLUSTER 2 SPAC9G1.10c >COG5430 (Putative duplication confidence score 1.000) CLUSTER 1 YPO1695 YPO1698 YPO1699 YPO1700 PA4648 PA4649 PA4650 PA4653 RSc2692 RSc2695 RSc2696 RSp1497 RSp1500 AGl295 AGl303 mll7723 mll7726 RC0638 CLUSTER 2 RC0646 >COG5433 (Putative duplication confidence score 1.000) CLUSTER 1 SPy0303 SPy1574 SPy1807 SPy2180 all8064 all8065 asr2499 b1458 b1459 ybfD ybfL yhhI Z0271 Z0275 Z0700 Z0854 Z0856 Z0857 Z2253 Z2254 ECs0241 ECs0245 ECs0602 ECs0731 ECs2062 ECs2063 ECs2832 SMb20421 SMc01466 SMc03886 SMc03892 CLUSTER 2 ydcC ECs2833 >COG5434 (Putative duplication confidence score 1.000) CLUSTER 1 YJR153w TM0437 CAC0355 CAC3684 SP1833 RSc1756 RSp0833 RSp0880 AGl3361 AGl619 CC0572 CLUSTER 2 AGl183 >COG5444 (Putative duplication confidence score 1.000) CLUSTER 1 SA0281 lin0059 BS_yxiD BH0978 BH2344 BH2523 BH3705 BH3991 BH3992 BH4017 CLUSTER 2 BS_yeeF BS_yobL BS_yokI BS_yqcG BS_ywqJ >COG5445 (Putative duplication confidence score 1.000) CLUSTER 1 yfaQ Z3480 ECs3110 PA4488 RSc3029 CLUSTER 2 Z3479 ECs3109 RSc0320 >COG5450 (Putative duplication confidence score 1.000) CLUSTER 1 Rv0657c Rv1560 Rv2009 Rv2758c MT0662.1 MT0686 MT1611 MT2064.1 MT2828 ML1911A AGc1846 CC2983 CLUSTER 2 Rv2375 Rv2545 MT2444 MT2621 >COG5461 (Putative duplication confidence score 0.500) CLUSTER 1 AGc378 SMc04110 mlr5598 CLUSTER 2 mlr8762 CC2944 >COG5463 (Putative duplication confidence score 1.000) CLUSTER 1 ygiB ZygiB ECs3925 YPO0661 STM3187 AGc3818 CC2366 CLUSTER 2 yjfM ZyjfM ECs5161 STM4375 >COG5472 (Putative duplication confidence score 1.000) CLUSTER 1 YPO0899 RSp0688 Cj1160c CLUSTER 2 Cj1158c >COG5476 (Putative duplication confidence score 1.000) CLUSTER 1 RSp1573 AGc4702 AGl1835 SMb21155 SMb21161 BMEII0539 mll4144 mll6676 mlr5988 mlr6294 CLUSTER 2 mll6059 msl6060 >COG5479 (Putative duplication confidence score 0.750) CLUSTER 1 MA1510_2 Cgl0771 Cgl1439 Cgl1790 Cgl1798 Cgl1842 Cgl2494 Cgl2815_2 Rv2721c MT2794 ML1002 CLUSTER 2 DR1115 Cgl2827 Rv3811 MT3918 >COG5486 (Putative duplication confidence score 0.500) CLUSTER 1 RSp0711 mll0509 mll6464 CLUSTER 2 SMc02859 mlr8147 >COG5489 (Putative duplication confidence score 0.500) CLUSTER 1 RSc2613 AGpT209 AGpT217 mll9301 mlr9738 mlr9743 CC2683 CLUSTER 2 SMa0922 mlr6185 >COG5490 (Putative duplication confidence score 0.500) CLUSTER 1 SMc00777 mlr6541 CLUSTER 2 mll1145 CC2160 >COG5492 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0551 CAC0552 CAC1389 CAC2107 CAC2367 CAC3085 CAC3086 CAC3272_1 CAC3273_1 CAC3274_1 CAC3275 CAC3278 CAC3279_1 CAC3280_1 CAP0002_1 CAP0003_1 CAP0160 lin2385 BS_yjdB Z0972 Z1894 Z2137 Z2358 Z3087 ECs0834 ECs1111 ECs1640 ECs2169 ECs2729 ECs2952 YPMT1.14c YPMT1.20c YPO2110 YPO2116 STM0916 STM1038 STM2597 CLUSTER 2 CAC3565 >COG5502 (Putative duplication confidence score 1.000) CLUSTER 1 aq_888 all1996 all3586 alr0892 SMc01448 mll6598 CLUSTER 2 SMc01008 >COG5504 (Putative duplication confidence score 0.500) CLUSTER 1 DR0445 SA2177 BS_yjfC CLUSTER 2 BS_yjaZ BH2873 >COG5507 (Putative duplication confidence score 0.500) CLUSTER 1 ybaA ZybaA ECs0509 mll7839 CLUSTER 2 SMc01560 mlr2642 >COG5519 (Putative duplication confidence score 0.500) CLUSTER 1 MA1895 MA2235 MA4137 SA1828 CLUSTER 2 SA0059 SA0073 Z1843 ECs1583 ECs1584 YPO1259 STM2745 PM1782 >COG5525 (Putative duplication confidence score 1.000) CLUSTER 1 lin0100 all7676 ybcX Z1883 Z2131 Z2364 ECs1106 ECs1630 ECs2179 ECs2735 STM2608 XF0508 XF0711 XF2120 XF2500 RSc0853 CLUSTER 2 Z0964 Z2116 Z3099 ECs0825 ECs2963 STM0910 STM1031 >COG5539 (Putative duplication confidence score 1.000) CLUSTER 1 YFL044c SPAC24C9.14 ECU05g0570 CLUSTER 2 YHL013c SPAC1952.03 >COG5542 (Putative duplication confidence score 0.500) CLUSTER 1 YBR004c SPAC18B11.05 ECU09g0560 all4350 CLUSTER 2 CAC0354 all4348 all4349 >COG5556 (Putative duplication confidence score 1.000) CLUSTER 1 YPO2102 SMb20839 mlr8001 CLUSTER 2 SMa0731 >COG5564 (Putative duplication confidence score 1.000) CLUSTER 1 YPO3838 SMa1332 mll9387 mlr3388 CLUSTER 2 mll9384_1 mlr9389 >COG5565 (Putative duplication confidence score 1.000) CLUSTER 1 XF1238 CLUSTER 2 XF1239 SMc04187 mll1771 msl1767 >COG5576 (Putative duplication confidence score 1.000) CLUSTER 1 YDL106c YDR451c YML027w SPAC32A11.03c SPBC21B10.13c ECU02g1200 ECU03g0600 ECU03g0610 ECU03g1170 ECU04g0970 ECU04g1030 ECU06g0500 ECU09g0970 CLUSTER 2 ECU10g1470 >COG5588 (Putative duplication confidence score 0.500) CLUSTER 1 RSp0712 mll0508 mll4476 mll6465 CLUSTER 2 SMa0407 SMc02860 mlr8146 >COG5592 (Putative duplication confidence score 0.500) CLUSTER 1 Ta0035 TVN0039 SSO1911 SSO2049 CLUSTER 2 SSO1764 alr3199 >COG5596 (Putative duplication confidence score 0.667) CLUSTER 1 YDL217c SPBC25H2.04c ECU07g0240 CLUSTER 2 YJL143w YNR017w SPAC3A12.16c SPCC16A11.09c >COG5598 (Putative duplication confidence score 0.667) CLUSTER 1 MA0528 MA0932 SMc01661 mll5409 CLUSTER 2 SMa1478 SMb21178 SMc00886 SMc04330 mll1230 mll1516 mll1654 mlr1212 mlr8280 >COG5609 (Putative duplication confidence score 1.000) CLUSTER 1 SA0170 BS_yrhF BH2529 CLUSTER 2 SA0413 BS_ybcI BH3870 alr3238 >COG5632 (Putative duplication confidence score 0.500) CLUSTER 1 SA0905_2 lin2703 CLUSTER 2 lin0128 lin1700 lin2374 lin2563 BS_cwlA_1 BS_xlyA_1 BS_xlyB_1 BS_yomC BS_yqeE_1 >COG5637 (Putative duplication confidence score 0.500) CLUSTER 1 DR2377 DRA0006 alr0894 CLUSTER 2 slr0941 all2381 >COG5642 (Putative duplication confidence score 0.500) CLUSTER 1 YPO2345 SMb20696 CLUSTER 2 SMa2281 mlr9078 >COG5643 (Putative duplication confidence score 1.000) CLUSTER 1 MA0715 MTH1346 MTH55 MTH56 MTH674 MK1177 CLUSTER 2 MTH913 >COG5648 (Putative duplication confidence score 1.000) CLUSTER 1 YBR089c-a YDL002c YDR174w YKL032c YMR072w YPR052c SPAC57A10.09c ECU06g1270 CLUSTER 2 SPAC4G9.11c >COG5649 (Putative duplication confidence score 1.000) CLUSTER 1 RSp1476 SMb21004 mll2249 CLUSTER 2 SMb21005 mll2250 >COG5653 (Putative duplication confidence score 0.500) CLUSTER 1 AGc2285 SMc01796 mll2080 mll2082 mll8447 CLUSTER 2 mlr0003 CC1244 CC2278 CC3689 >COG5655 (Putative duplication confidence score 0.500) CLUSTER 1 CAC1872 SA0028 pli0015 CLUSTER 2 SA0027 SAP002 BH3964 >COG5657 (Putative duplication confidence score 1.000) CLUSTER 1 YGL238w SPBC30B4.05 ECU02g0630 CLUSTER 2 YPL125w SPAC22H10.03c SPCC1322.06 >COG5664 (Putative duplication confidence score 1.000) CLUSTER 1 AGc3641 SMb21492 BMEII0082 mlr1823 CLUSTER 2 mlr7711