R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9994098|gb|AAG12126.1|AC079730_22 (AC079730) hypothetical protein;
33506-35224 [Arabidopsis thaliana]
>gi|12321358|gb|AAG50754.1|AC079733_22 (AC079733) integral membrane
protein, putative [Arabidopsis thaliana]
Length = 212
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 0.00023, P = 0.00023
Identities = 22/30 (73%), Positives = 27/30 (90%), Frame = +1
Query: 1 FSIFSLGICILVSGLQLWYLKRFFRKKKLI 90
+SI SLGICI+VSGLQ+ YLK++F KKKLI
Sbjct: 183 YSIMSLGICIVVSGLQILYLKQYFEKKKLI 212
>gi|8778403|gb|AAF79411.1|AC068197_21 (AC068197) F16A14.23 [Arabidopsis
thaliana]
Length = 221
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.023, P = 0.023
Identities = 18/29 (62%), Positives = 23/29 (79%), Frame = +1
Query: 4 SIFSLGICILVSGLQLWYLKRFFRKKKLI 90
S SL +C+ V+GLQ W+LK FF+KKKLI
Sbjct: 193 SFVSLAVCLSVAGLQFWHLKTFFQKKKLI 221
>gi|7487150|pir||T02697 hypothetical protein T18E12.4 - Arabidopsis thaliana
>gi|4335768|gb|AAD17445.1| (AC006284) putative Golgi-associated
membrane trafficking protein [Arabidopsis thaliana]
Length = 213
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.12, P = 0.11
Identities = 18/29 (62%), Positives = 22/29 (75%), Frame = +1
Query: 4 SIFSLGICILVSGLQLWYLKRFFRKKKLI 90
S SL +C+ V+GLQ W+LK FF KKKLI
Sbjct: 185 SFGSLVVCLSVAGLQFWHLKTFFEKKKLI 213
>gi|3087719|emb|CAA76642.1| (Y17129) S31 protein [Anguilla anguilla]
Length = 48
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | 48
0 20 40
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.16, P = 0.15
Identities = 19/30 (63%), Positives = 23/30 (76%), Frame = +1
Query: 1 FSIFSLGICILVSGLQLW---YLKRFFRKKKLI 90
FSIFS+ C L+ GL W YL+RFF+ KKLI
Sbjct: 18 FSIFSM--CCLI-GLATWQVFYLRRFFKAKKLI 47
>gi|5852697|gb|AAD54172.1|AF134972_1 (AF134972) MHC class II antigen [Psettodes
sp.]
Length = 63
Frame 3 hits (HSPs): ______________________
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 63
0 20 40 60
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 13/33 (39%), Positives = 16/33 (48%), Frame = +3
Query: 234 QELESLVRSWR*WNDGDWF*LLSIYYIYEFLRH 332
QE+ S V S DGDW+ Y I+ L H
Sbjct: 20 QEVTSDVTSTEELADGDWY-----YQIHSHLEH 47
Score = 40 (14.1 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 9/19 (47%), Positives = 10/19 (52%), Frame = +1
Query: 106 YETYPHQIVFSSFRDDSNI 162
YE YP QI S RD +
Sbjct: 4 YEFYPKQIRVSWTRDGQEV 22
>gi|5834873 ref|NP_006942.1|ND4L_10020 NADH dehydrogenase subunit 4L [Ascaris
suum] >gi|1171867|sp|P24874|NULM_ASCSU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4L >gi|102586|pir||S26015 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4L - pig roundworm mitochondrion
>gi|559489|emb|CAA38164.1| (X54253) ND4L protein [Ascaris suum]
Length = 77
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.6, P = 0.97
Identities = 18/54 (33%), Positives = 29/54 (53%), Frame = +1
Query: 55 YLKRFFRKKKLI*ILLSYETYPHQIVFSSFRDDSNIV*FFFLWILSCVIGVCGL 216
+L FF+ ++L+ IL+S E + +F F D N + FF+ S V V G+
Sbjct: 8 FLSLFFKWQRLMFILISLE-FIVMSLFILFSGDLNEMMFFYFMCFSVVSSVLGM 60
>gi|11355301|pir||F82093 hypothetical protein VC2317 [imported] - Vibrio
cholerae (group O1 strain N16961) >gi|9656882|gb|AAF95461.1|
(AE004301) hypothetical protein [Vibrio cholerae]
Length = 54
Frame -3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 54
0 20 40
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 4.6, P = 0.99
Identities = 10/25 (40%), Positives = 19/25 (76%), Frame = -3
Query: 523 CTNIRLIHSSIHILFHLINSISVKH 449
C N+ L+ +S+H LF+L+N + ++H
Sbjct: 28 CNNLHLLFTSVHTLFNLLN-LKLQH 51
>gi|6630552|gb|AAF19571.1|AC011708_14 (AC011708) putative membrane protein
[Arabidopsis thaliana]
Length = 217
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 4.6, P = 0.99
Identities = 17/28 (60%), Positives = 22/28 (78%), Frame = +1
Query: 7 IFSLGICILVSGLQLWYLKRFFRKKKLI 90
+ SLG+ I+VS Q+ YLKR+F KKKLI
Sbjct: 190 LMSLGVAIVVSISQVLYLKRYFLKKKLI 217
>gi|12597802|gb|AAG60114.1|AC073178_25 (AC073178) unknown protein [Arabidopsis
thaliana]
Length = 204
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 9.3, P = 1.0
Identities = 15/29 (51%), Positives = 21/29 (72%), Frame = +1
Query: 4 SIFSLGICILVSGLQLWYLKRFFRKKKLI 90
S+ S +CI V+G+Q +LK FF KKK+I
Sbjct: 176 SVLSFFVCIGVAGMQFLHLKTFFEKKKVI 204
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.159 0.620
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.354 0.158 0.570
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.361 0.165 0.617
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.153 0.501
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.150 0.499
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.361 0.157 0.561
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 183 183 10. 76 3 12 22 0.12 34
31 0.12 37
+2 0 183 183 10. 76 3 12 22 0.12 34
31 0.12 37
+1 0 184 184 10. 76 3 12 22 0.12 34
31 0.12 37
-1 0 184 184 10. 76 3 12 22 0.12 34
31 0.12 37
-2 0 183 183 10. 76 3 12 22 0.12 34
31 0.12 37
-3 0 183 183 10. 76 3 12 22 0.12 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 9
No. of states in DFA: 594 (59 KB)
Total size of DFA: 219 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 182.88u 1.06s 183.94t Elapsed: 00:00:31
Total cpu time: 182.90u 1.09s 183.99t Elapsed: 00:00:31
Start: Wed Jan 23 18:25:21 2002 End: Wed Jan 23 18:25:52 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000