BLASTP 2.0.8 [Jan-05-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= YDR021W FAL1, Chr IV from 486799-487998 (399 letters) Database: nr 361,503 sequences; 110,384,460 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT RNA HELI... 755 0.0 gi|1352438|sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A... 511 e-144 gi|1170507|sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A... 491 e-138 gi|2104219|gnl|PID|d1005415 (D21853) KIAA0111 [Homo sapiens] 486 e-136 gi|729821|sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-... 485 e-136 gi|2443810 (AF020432) eukaryotic translation initiation factor ... 483 e-136 gi|2773184 (AF039720) similar to the "DEAD" box family of helic... 482 e-135 gi|3775985|emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis t... 476 e-133 gi|1708418|sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A... 474 e-133 gi|90965|pir||S00986 translation initiation factor eIF-4A I - m... 463 e-130 gi|90964|pir||JS0039 translation initiation factor eIF-4A - mou... 463 e-130 gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-... 463 e-129 gi|72888|pir||FIMS4A translation initiation factor eIF-4A - mou... 463 e-129 gi|266336|sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-... 463 e-129 gi|50815|emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) ... 462 e-129 gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A... 462 e-129 gi|673433|emb|CAA40268| (X56953) protein synthesis initiation f... 462 e-129 gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION FACTOR 4A... 460 e-129 gi|2370591|emb|CAA73167| (Y12590) translation initiation factor... 458 e-128 gi|124217|sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A ... 453 e-127 gi|50823|emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - ... 453 e-127 gi|462401|sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A ... 451 e-126 gi|2500523|sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A... 450 e-126 gi|2370593|emb|CAA73168| (Y12591) translation initiation factor... 450 e-125 gi|3097266|emb|CAA76677| (Y17186) translation initiation factor... 449 e-125 gi|446778|prf||1912301A initiation factor eIF-4A [Drosophila me... 448 e-125 gi|1170511|sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 447 e-125 gi|2500517|sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 446 e-125 gi|2500518|sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 446 e-124 gi|2119938|pir||S52023 translation initiation factor eIF-4A.14 ... 446 e-124 gi|2119933|pir||S52018 translation initiation factor eIF-4A.11 ... 445 e-124 gi|2341061 (U73459) translational initiation factor eIF-4A [Zea... 445 e-124 gi|2500520|sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 444 e-124 gi|2500522|sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A... 444 e-124 gi|2119934|pir||S52019 translation initiation factor eIF-4A.7 -... 444 e-124 gi|2119932|pir||S52017 translation initiation factor eIF-4A.9 -... 444 e-124 gi|1170506|sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A... 444 e-124 gi|2286151 (AF007580) translation initiation factor [Zea mays] 443 e-124 gi|2500516|sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 443 e-124 gi|2119935|pir||S52020 translation initiation factor eIF-4A.15 ... 443 e-123 gi|1170509|sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A... 442 e-123 gi|1170503|sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A... 442 e-123 gi|2500521|sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 441 e-123 gi|3776021|emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis t... 441 e-123 gi|1170508|sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 437 e-122 gi|547712|sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A ... 436 e-121 gi|1170505|sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A... 434 e-121 gi|124218|sp|P10081|IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A ... 423 e-118 gi|2150025 (AF001211) translation initiation factor [Cryptospor... 420 e-117 gi|1688326 (U78759) IfdA [Dictyostelium discoideum] 411 e-114 gi|3002483 (AE001274) EIF-4A; L3162.6 [Leishmania major] >gi|30... 409 e-113 gi|2500514|sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION ... 406 e-112 gi|2119937|pir||S52022 translation initiation factor eIF-4A.13 ... 374 e-103 gi|2500519|sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 372 e-102 gi|2119936|pir||S52021 translation initiation factor eIF-4A.6 -... 328 3e-89 gi|2500515|sp|Q40469|IF46_TOBAC EUKARYOTIC INITIATION FACTOR 4A... 328 4e-89 gi|532817 (U13876) highly similar to eukaryotic initiation fact... 324 8e-88 gi|2136088|pir||I52691 RCK - human >gi|458727|gnl|PID|d1005007 ... 291 4e-78 gi|129376|sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELIC... 291 4e-78 gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELI... 291 4e-78 gi|1709533|sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 ... 288 4e-77 gi|2745894|gb|AAB94769| (AF038995) putative RNA helicase RCK [M... 286 2e-76 gi|126938|sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELIC... 280 8e-75 gi|3776001|emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis t... 280 1e-74 gi|1174456|sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI... 280 1e-74 gi|103314|pir||A39157 probable helicase (EC 3.6.1.-) - fruit fl... 280 1e-74 gi|3386613 (AC004665) putative ATP-dependent RNA helicase [Arab... 279 2e-74 gi|3775993|emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis t... 278 5e-74 gi|1175426|sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI... 274 8e-73 gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT RNA HELIC... 272 3e-72 gi|407992 (L25125) RNA helicase [Mus musculus] 268 6e-71 gi|3108197 (AF005239) DEAD-box helicase [Drosophila melanogaster] 261 8e-69 gi|1177010|sp|P42305|YXIN_BACSU PROBABLE RNA HELICASE IN WAPA-L... 257 7e-68 gi|1708152|sp|P20449|DBP5_YEAST PROBABLE ATP-DEPENDENT RNA HELI... 257 9e-68 gi|1881268|dbj||AB001488_42 (AB001488) ATP-DEPENDENT RNA HELICA... 257 9e-68 gi|3776005|emb|CAA09205| (AJ010466) RNA helicase [Arabidopsis t... 257 9e-68 gi|3132829 (AF063447) nuclear RNA helicase [Rattus norvegicus] 256 1e-67 gi|2500529|sp|Q13838|HE47_HUMAN PROBABLE ATP-DEPENDENT RNA HELI... 256 2e-67 gi|4235116 (AF118128) nuclear RNA helicase Bat1 [Mus musculus] 256 2e-67 gi|1001719|gnl|PID|d1011207 (D64004) ATP-dependent RNA helicase... 254 6e-67 gi|3047117 (AF058919) similar to ATP-dependent RNA helicases [A... 254 8e-67 gi|2500530|sp|Q29024|HE47_PIG PROBABLE ATP-DEPENDENT RNA HELICA... 253 2e-66 gi|1905998 (U90426) nuclear RNA helicase [Homo sapiens] 252 3e-66 gi|2500531|sp|Q63413|HE47_RAT PROBABLE ATP-DEPENDENT RNA HELICA... 252 3e-66 gi|2500532|sp|Q27268|HE47_DROME PROBABLE ATP-DEPENDENT RNA HELI... 247 7e-65 gi|1706338|sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD... 247 1e-64 gi|548730|sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELIC... 245 5e-64 gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family (... 245 5e-64 gi|2313340 (AE000544) ATP-dependent RNA helicase, DEAD-box fami... 244 6e-64 gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase [Pla... 242 3e-63 gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicoba... 242 3e-63 gi|2408027|emb|CAB16225| (Z99162) atp-dependent rna helicase [S... 241 6e-63 gi|2500540|sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELI... 240 1e-62 gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family... 240 1e-62 gi|539961|pir||A42811 translation initiation factor eIF-4A homo... 240 2e-62 gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELI... 239 2e-62 gi|2190968 (AF002677) DEAD-box RNA helicase [Dictyostelium disc... 239 3e-62 gi|1169261|sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD... 238 5e-62 gi|96321|pir||A42357 probable ATP-dependent RNA helicase deaD -... 237 8e-62 gi|461923|sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD 237 8e-62 gi|606102 (U18997) two frameshifts relative to ECODEAD [Escheri... 237 8e-62 gi|2500533|sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELI... 236 1e-61 gi|461924|sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD ... 232 3e-60 gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans] 228 4e-59 gi|3861207|emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA ... 227 9e-59 gi|3879543|emb|CAA90406| (Z50071) similar to ATP-dependent heli... 224 1e-57 gi|3879544|emb|CAA90407| (Z50071) similar to ATP-dependent heli... 224 1e-57 gi|3879545|emb|CAA90408| (Z50071) similar to ATP-dependent heli... 224 1e-57 gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema pal... 215 3e-55 gi|4104820 (AF040045) DEAD box RNA helicase homolog [Anabaena v... 215 5e-55 gi|3288677|gnl|PID|d1032186 (D89592) rhlE [Vibrio alginolyticus] 213 2e-54 gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana] 210 2e-53 gi|118283|sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||... 208 7e-53 gi|133134|sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELIC... 207 1e-52 gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe]... 207 1e-52 gi|416881|sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA ... 206 2e-52 gi|3149952|gnl|PID|d1029287 (AB010259) DRH1 [Arabidopsis thaliana] 206 2e-52 gi|1749748|gnl|PID|d1014628 (D89270) similar to Saccharomyces c... 206 3e-52 gi|1174440|sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB... 205 6e-52 gi|95749|pir||S12698 probable RNA helicase - Escherichia coli >... 204 1e-51 gi|1169228|sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 ... 204 1e-51 gi|2275211 (AC002337) RNA helicase isolog [Arabidopsis thaliana] 203 2e-51 gi|1363325|pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U2... 202 4e-51 gi|3882323|gnl|PID|d1035502 (AB018344) KIAA0801 protein [Homo s... 202 4e-51 gi|1731006|sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-S... 198 4e-50 gi|2463519|dbj||AB005147_1 (AB005147) vas [Danio rerio] 198 6e-50 gi|2558535|emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Dani... 198 8e-50 gi|1351656|sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI... 197 1e-49 gi|3641|emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae] 196 2e-49 gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELI... 196 2e-49 gi|2072674|emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculo... 196 2e-49 gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [Arabi... 196 2e-49 gi|1944405|gnl|PID|d1020349 (D86601) DEAD family RNA helicase; ... 196 3e-49 gi|3845295 (AE001421) RNA helicase [Plasmodium falciparum] 195 5e-49 gi|529704 (U13070) similar to RNA helicases [Caenorhabditis ele... 194 7e-49 gi|4126714|gnl|PID|d1037697 (AB016603) DEAD-Box Protein [Ciona ... 194 9e-49 gi|4126716|gnl|PID|d1037698 (AB016604) DEAD-Box Protein [Ciona ... 194 9e-49 gi|2134051|pir||I51235 DEAD box protein - African clawed frog (... 194 1e-48 gi|1076837|pir||S53813 probable RNA helicase - slime mold (Dict... 193 2e-48 gi|3986287|gnl|PID|d1035980 (AB017003) DjVLGB [Dugesia japonica] 192 4e-48 gi|84895|pir||A31922 ATP-dependent RNA helicase homolog - fruit... 189 3e-47 gi|1352826|sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CA... 189 3e-47 gi|2500525|sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLO... 188 5e-47 gi|2500526|sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG)... 185 3e-46 gi|1723271|sp|Q10202|YAXB_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI... 185 3e-46 gi|1170186|sp|P20448|DBP4_YEAST PROBABLE ATP-DEPENDENT RNA HELI... 185 6e-46 gi|1619952 (U72149) putative RNA helicase [Saccharomyces cerevi... 185 6e-46 gi|1172596|sp|P23394|PR28_YEAST PRE-MRNA SPLICING FACTOR RNA HE... 182 3e-45 gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA HELICASE ROK1... 176 3e-43 gi|1764094 (U81597) ATP-dependent RNA helicase [Leishmania amaz... 175 5e-43 gi|2443870 (AC002985) R27090_2 [Homo sapiens] 170 1e-41 gi|1351666|sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI... 166 2e-40 gi|1488647|emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea] 159 3e-38 gi|1488521|emb|CAA68194| (X99938) RNA helicase [Arabidopsis tha... 152 4e-36 gi|3775997|emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis t... 150 2e-35 gi|3775995|emb|CAA09200| (AJ010461) RNA helicase [Arabidopsis t... 145 7e-34 gi|3327394 (AC004483) putative RNA helicase [Arabidopsis thaliana] 143 3e-33 gi|4832|emb|CAA41110| (X58099) eIF4a [Saccharomyces cerevisiae] 127 2e-28 gi|2367301 (AE000458) ATP-dependent DNA helicase [Escherichia c... 82 9e-15 gi|2851488|sp|P15043|RECQ_ECOLI ATP-DEPENDENT DNA HELICASE RECQ 82 9e-15 gi|72995|pir||BVECRQ recQ protein - Escherichia coli >gi|148221... 79 4e-14 gi|147559 (M30198) recQ [Escherichia coli] 79 4e-14 gi|3776003|emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis t... 78 1e-13 gi|1931649 (U95973) DNA helicase isolog [Arabidopsis thaliana] 69 6e-11 gi|3322364 (AE001194) ATP-dependent DNA helicase, putative [Tre... 63 4e-09 gi|2621366 (AE000816) ATP-dependent helicase [Methanobacterium ... 52 7e-06 gi|4008108 (AF107116) putative ATP-dependent RNA helicase Ded1p... 45 0.001 >gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE FAL1 >gi|1078511|pir||S54644 hypothetical protein YDR021w - yeast (Saccharomyces cerevisiae) >gi|840874|emb|CAA89846| (Z49770) unknown [Saccharomyces cerevisiae] >gi|1216228|emb|CAA65213| (X95966) orf:PZC399 [Saccharomyces cerevisiae] >gi|1431450|emb|CAA98842| (Z74317) ORF YDR021w [Saccharomyces cerevisiae] Length = 399 Score = 755 bits (1929), Expect = 0.0 Identities = 383/399 (95%), Positives = 383/399 (95%) Query: 1 MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60 MSFDREEDQ ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG Sbjct: 1 MSFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60 Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV 120 KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV Sbjct: 61 KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV 120 Query: 121 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS 180 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS Sbjct: 121 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS 180 Query: 181 ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240 ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK Sbjct: 181 ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240 Query: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK Sbjct: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300 Query: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG Sbjct: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360 Query: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS 399 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS Sbjct: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS 399 >gi|1352438|sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A-LIKE PROTEIN C1F5.10 >gi|1103737|emb|CAA92238| (Z68136) unknown [Schizosaccharomyces pombe] Length = 394 Score = 511 bits (1301), Expect = e-144 Identities = 249/373 (66%), Positives = 311/373 (82%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E MNLK+DLLRGIY+YG+E PS++QSRAI QI G+DVIAQAQSGTGKTATF+IG+LQ+I Sbjct: 24 EEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSI 83 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 DL +D QALILSPTRELA QI VV LGD+MNV A GG ++ +D+KK+ +G Sbjct: 84 DLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD-YGQHV 142 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 VSGTPGRV DMI+++ L+TRNV+ML+LDEADELL++ GFK+QIYDI+ LP QVVVV Sbjct: 143 VSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ--GFKEQIYDIYRYLPPGTQVVVV 200 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT+ +D+LE+T KF +PV+ILVKRDE++LEG+KQY + V+KEEWKFDTLCD+YD+LTI Sbjct: 201 SATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTI 260 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCN+++KVDWL++++ ++NF V SMHG+M Q+ERD +M DFR G+SRVLI TD+W Sbjct: 261 TQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIW 320 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGRSGRFGRKGVAINF+T D+ LR+IE++YS Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYS 380 Query: 386 IKINPMPANFAEL 398 I+ MP N ++ Sbjct: 381 TVIDEMPMNIGDM 393 >gi|1170507|sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-3 (EIF-4A-3) >gi|100276|pir||S22579 translation initiation factor eIF-4A - curled-leaved tobacco >gi|19699|emb|CAA43514| (X61206) nicotiana eukaryotic translation initiation factor 4A [Nicotiana plumbaginifolia] Length = 391 Score = 491 bits (1251), Expect = e-138 Identities = 236/371 (63%), Positives = 303/371 (81%), Gaps = 3/371 (0%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 M +KDDLLRG+Y YGFE PS+IQ RA+ IISG+DVIAQAQSGTGKT+ + + Q +D Sbjct: 23 MGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDT 82 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 + ++QALILSPTRELA+Q +V+ +GDY+NV A A GGK++ +D++K++ HG Q VS Sbjct: 83 KSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLE-HGVQVVS 141 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 GTPGRV DMIK++ L+TR +++L+LDE+DE+LS GFK QIYD++ LP QVV++SA Sbjct: 142 GTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSR--GFKDQIYDVYRYLPPELQVVLISA 199 Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 T+ +ILE+T KFM DPV+ILVKRDE++LEGIKQ+ V V+KEEWKFDTLCD+YD+LTITQ Sbjct: 200 TLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 259 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIFCNTK+KVDWL+ ++ ++NF V SMHGDM Q+ERD +M +FR G +RVLI+TDVWAR Sbjct: 260 AVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWAR 319 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387 G+DVQQVSLVINYDLP E YIHRIGRSGRFGRKGVAINF+ D+ LR+IE++YS + Sbjct: 320 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379 Query: 388 INPMPANFAEL 398 I+ MP N A+L Sbjct: 380 IDEMPMNVADL 390 >gi|2104219|gnl|PID|d1005415 (D21853) KIAA0111 [Homo sapiens] Length = 411 Score = 486 bits (1238), Expect = e-136 Identities = 234/373 (62%), Positives = 308/373 (81%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L++DLLRGIY+YGFE PS+IQ RAI QII G+DVIAQ+QSGTGKTATF+I +LQ + Sbjct: 41 DTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 100 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D++ ++ QALIL+PTRELA QI + + LGDYMNV A GG + +D++K+ +G Sbjct: 101 DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-YGQHV 159 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V+GTPGRV DMI+++ L+TR ++MLVLDEADE+L++ GFK+QIYD++ LP QVV++ Sbjct: 160 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPPATQVVLI 217 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT+ +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+LTI Sbjct: 218 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNTK+KVDWL++++ ++NF V SMHGDM Q+ER+ +M +FR+G SRVLISTDVW Sbjct: 278 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 337 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARG+DV QVSL+INYDLP E YIHRIGRSGR+GRKGVAINF+ D+ LR+IE++YS Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 397 Query: 386 IKINPMPANFAEL 398 +I+ MP N A+L Sbjct: 398 TQIDEMPMNVADL 410 >gi|729821|sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-LIKE NUK-34 (HA0659) >gi|631472|pir||S45142 translation initiation factor eIF-4A2 homolog - human >gi|496902|emb|CAA56074| (X79538) translation initiation factor [Homo sapiens] Length = 411 Score = 485 bits (1235), Expect = e-136 Identities = 233/373 (62%), Positives = 308/373 (82%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L++DLLRGIY+YGFE PS+IQ RAI QII G+DVIAQ+QSGTGKTATF+I +LQ + Sbjct: 41 DTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 100 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D++ ++ QALIL+PTRELA QI + + LGDYMNV A GG + +D++K+ +G Sbjct: 101 DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-YGQHV 159 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V+GTPGRV DMI+++ L+TR ++MLVLDEADE+L++ GFK+QIYD++ LP QVV++ Sbjct: 160 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPSATQVVLI 217 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT+ +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+LTI Sbjct: 218 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNTK+KVDWL++++ ++NF V SMHGDM Q+ER+ +M +FR+G SRVLISTDVW Sbjct: 278 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 337 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARG+DV QVSL+INYDLP E YIHRIGRSG++GRKGVAINF+ D+ LR+IE++YS Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGQYGRKGVAINFVKNDDIRILRDIEQYYS 397 Query: 386 IKINPMPANFAEL 398 +I+ MP N A+L Sbjct: 398 TQIDEMPMNVADL 410 >gi|2443810 (AF020432) eukaryotic translation initiation factor XeIF-4AIII [Xenopus laevis] Length = 414 Score = 483 bits (1231), Expect = e-136 Identities = 231/373 (61%), Positives = 307/373 (81%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L++DLLRGIY+YGFE PS+IQ +AI QII G+DVIAQ+QSGTGKTATF + +LQ + Sbjct: 44 DTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCL 103 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D++ ++ QALIL+PT+ELA QI +V+ LGDYMNV A GG + +D++K+ +G Sbjct: 104 DIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLD-YGQHV 162 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V+GTPGRV DMI+++ L+TR ++MLVLDEADE+L++ GFK+QIYD++ LP QV ++ Sbjct: 163 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPPATQVCLI 220 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT+ +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+LTI Sbjct: 221 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 280 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNTK+KVDWL++++ ++NF V SMHGDM Q+ER+ +M +FR+G SRVLISTDVW Sbjct: 281 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 340 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARG+DV QVSL+INYDLP E YIHRIGRSGR+GRKGVAINF+ D+ LR+IE++YS Sbjct: 341 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 400 Query: 386 IKINPMPANFAEL 398 +I+ MP N A+L Sbjct: 401 TQIDEMPMNVADL 413 >gi|2773184 (AF039720) similar to the "DEAD" box family of helicases; most similar to eukaryotic initiation factor 4A [Caenorhabditis elegans] Length = 399 Score = 482 bits (1228), Expect = e-135 Identities = 234/373 (62%), Positives = 306/373 (81%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L++DLLRGIY+YGFE PS+IQ RA+ I+ +DVIAQAQSGTGKTATF+I +LQ++ Sbjct: 29 DKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSL 88 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + ++ QALILSPTRELA QI +VV LGDYMNV A GG L +D++K+ +G Sbjct: 89 DTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLD-YGQHV 147 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 VSGTPGRV DMI+++ L+TR +++LVLDEADE+L++ GFK+Q+YDI+ LP QVV++ Sbjct: 148 VSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK--GFKEQLYDIYRYLPPGAQVVLL 205 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT+ +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V VD+EEWKFDTL D+YD+LTI Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTI 265 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ V+FCNT++KVDWL+ ++ ++NF V SMHGDM+Q++RD+VM +FR G +RVLISTDVW Sbjct: 266 TQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVW 325 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARG+DV QVSLVINYDLP E YIHRIGRSGRFGRKGVAINF+ + D+ LR+IE++YS Sbjct: 326 ARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYS 385 Query: 386 IKINPMPANFAEL 398 +I+ MP N A++ Sbjct: 386 TQIDEMPMNIADI 398 >gi|3775985|emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis thaliana] Length = 391 Score = 476 bits (1211), Expect = e-133 Identities = 229/371 (61%), Positives = 299/371 (79%), Gaps = 3/371 (0%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 M +K+D+LRG+Y YGFE PS+IQ RA+ I+ G+DVIAQAQSGTGKT+ + + Q +D Sbjct: 23 MGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDT 82 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 +++QALILSPTRELA+Q + ++ +G + N+ A A GG ++ +D++K++ HG VS Sbjct: 83 SSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLE-HGVHVVS 141 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 GTPGRV DMIK++ L+TR +++L+LDE+DE+LS GFK QIYD++ LP + QV +VSA Sbjct: 142 GTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSR--GFKDQIYDVYRYLPPDLQVCLVSA 199 Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 T+ +ILE+T KFM +PVKILVKRDE++LEGIKQ+ V V+KEEWKFDTLCD+YD+LTITQ Sbjct: 200 TLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 259 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIFCNTK+KVD+LS+++ NF V SMHGDM Q+ERD +MN+FR+G SRVLI+TDVWAR Sbjct: 260 AVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWAR 319 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387 GIDVQQVSLVINYDLP E YIHRIGRSGRFGRKGVAINF+ D+ LR+IE++YS + Sbjct: 320 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379 Query: 388 INPMPANFAEL 398 I+ MP N A+L Sbjct: 380 IDEMPMNVADL 390 >gi|1708418|sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|1321961|emb|CAA56772| (X80796) translation initiation factor eIF-4A [Schizosaccharomyces pombe] >gi|2222814 (L40627) cell cycle control protein eIF-4A [Schizosaccharomyces pombe] Length = 392 Score = 474 bits (1207), Expect = e-133 Identities = 237/373 (63%), Positives = 293/373 (78%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNLK +LLRGIY+YGFE PS+IQ RAI I+ +DV+AQAQSGTGKTATF+I +LQ I Sbjct: 22 DDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI 81 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D K QALIL+PTRELA QI +VV LGD MNV A GG ++DD+ +Q G Sbjct: 82 DTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQA-GVHV 140 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DMI+++ L T VQM VLDEADE+LS GFK QIYDIF LP QVV++ Sbjct: 141 VVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR--GFKDQIYDIFQLLPPTAQVVLL 198 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM +D+LEVT KFM DP++ILVK+DE++LEGIKQ+ V V+KEEWK DTLCD+Y+++T+ Sbjct: 199 SATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTV 258 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNT++KVDWL+++L + +F V SMHGDM Q +RD +M++FRTG SR+LI+TD+ Sbjct: 259 TQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLL 318 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGV+INF+T D+ +REIE+FY+ Sbjct: 319 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYN 378 Query: 386 IKINPMPANFAEL 398 I MP N A+L Sbjct: 379 THIEEMPMNIADL 391 >gi|90965|pir||S00986 translation initiation factor eIF-4A I - mouse Length = 407 Score = 463 bits (1179), Expect = e-130 Identities = 228/373 (61%), Positives = 288/373 (77%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 36 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 95 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q Sbjct: 96 ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 155 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++ Sbjct: 156 VIGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 213 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI Sbjct: 214 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 273 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 274 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 333 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D LR+IE FY+ Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 393 Query: 386 IKINPMPANFAEL 398 I MP N A+L Sbjct: 394 TSIEEMPLNVADL 406 >gi|90964|pir||JS0039 translation initiation factor eIF-4A - mouse >gi|556308 (L36611) protein synthesis initiation factor 4A [Mus musculus] Length = 406 Score = 463 bits (1179), Expect = e-130 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 94 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q Sbjct: 95 ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 154 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++ Sbjct: 155 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 212 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI Sbjct: 213 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 332 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D LR+IE FY+ Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 392 Query: 386 IKINPMPANFAEL 398 I MP N A+L Sbjct: 393 TSIEEMPLNVADL 405 >gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I) >gi|422959|pir||S33681 translation initiation factor eIF-4A.I - human >gi|219403|gnl|PID|d1003402 (D13748) eukaryotic initiation factor 4AI [Homo sapiens] >gi|2943740|gnl|PID|d1026001 (AB011595) eIF4A [Mus musculus] >gi|227238|prf||1617105B initiation factor 4AI [Oryctolagus cuniculus] Length = 406 Score = 463 bits (1178), Expect = e-129 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 94 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q Sbjct: 95 ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 154 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++ Sbjct: 155 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 212 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI Sbjct: 213 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 332 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D LR+IE FY+ Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 392 Query: 386 IKINPMPANFAEL 398 I MP N A+L Sbjct: 393 TSIEEMPLNVADL 405 >gi|72888|pir||FIMS4A translation initiation factor eIF-4A - mouse >gi|50814|emb|CAA26842| (X03039) put. eIF-4A (aa 1-390) [Mus musculus] >gi|50819|emb|CAA26845| (X03040) put. eIF-4A (aa 1-390) [Mus musculus] Length = 390 Score = 463 bits (1178), Expect = e-129 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 19 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 78 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q Sbjct: 79 ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 138 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++ Sbjct: 139 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 196 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI Sbjct: 197 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 256 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 257 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 316 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D LR+IE FY+ Sbjct: 317 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 376 Query: 386 IKINPMPANFAEL 398 I MP N A+L Sbjct: 377 TSIEEMPLNVADL 389 >gi|266336|sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I) >gi|109295|pir||S13269 initiation factor eIF-4A - rabbit Length = 394 Score = 463 bits (1178), Expect = e-129 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 23 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 82 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q Sbjct: 83 ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 142 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++ Sbjct: 143 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 200 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI Sbjct: 201 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 260 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 261 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 320 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D LR+IE FY+ Sbjct: 321 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 380 Query: 386 IKINPMPANFAEL 398 I MP N A+L Sbjct: 381 TSIEEMPLNVADL 393 >gi|50815|emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) [Mus musculus] >gi|50820|emb|CAA26846| (X03040) put. altern. eIF-4A (aa 1-370) [Mus musculus] Length = 370 Score = 462 bits (1176), Expect = e-129 Identities = 227/371 (61%), Positives = 287/371 (77%), Gaps = 2/371 (0%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 MNL + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I+L Sbjct: 1 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL 60 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q + Sbjct: 61 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 120 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++SA Sbjct: 121 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLLSA 178 Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 TM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTITQ Sbjct: 179 TMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 238 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF NT++KVDWL++++ +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ AR Sbjct: 239 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 298 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387 GIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D LR+IE FY+ Sbjct: 299 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 358 Query: 388 INPMPANFAEL 398 I MP N A+L Sbjct: 359 IEEMPLNVADL 369 >gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II) >gi|90966|pir||S00985 translation initiation factor eIF-4A II - mouse >gi|673434|emb|CAA40269| (X56953) protein synthesis initiation factor 4A [Mus musculus] >gi|227239|prf||1617105C initiation factor 4AII [Oryctolagus cuniculus] Length = 407 Score = 462 bits (1175), Expect = e-129 Identities = 224/373 (60%), Positives = 291/373 (77%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNLK+ LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ + Sbjct: 36 DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 ++ K+ QAL+L+PTRELA QI +V+ LGDYM A GG ++++++K+Q Sbjct: 96 EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 155 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIY+IF KL + QVV++ Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVLL 213 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 333 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T+ D LR+IE FY+ Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYN 393 Query: 386 IKINPMPANFAEL 398 + MP N A+L Sbjct: 394 TTVEEMPMNVADL 406 >gi|673433|emb|CAA40268| (X56953) protein synthesis initiation factor 4A [Mus musculus] Length = 408 Score = 462 bits (1175), Expect = e-129 Identities = 224/373 (60%), Positives = 291/373 (77%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNLK+ LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ + Sbjct: 37 DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 96 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 ++ K+ QAL+L+PTRELA QI +V+ LGDYM A GG ++++++K+Q Sbjct: 97 EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 156 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIY+IF KL + QVV++ Sbjct: 157 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVLL 214 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI Sbjct: 215 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 274 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 275 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 334 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T+ D LR+IE FY+ Sbjct: 335 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYN 394 Query: 386 IKINPMPANFAEL 398 + MP N A+L Sbjct: 395 TTVEEMPMNVADL 407 >gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II) >gi|485388|gnl|PID|d1006902 (D30655) eukaryotic initiation factor 4AII [Homo sapiens] >gi|1195610|bbs|172671 (S79942) protein synthesis initiation factor 4A-II homolog=EIF4A2 [human, fetal lung tissue, Peptide, 407 aa] [Homo sapiens] Length = 407 Score = 460 bits (1172), Expect = e-129 Identities = 224/373 (60%), Positives = 289/373 (77%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNLK+ LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ + Sbjct: 36 DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 ++ K+ QAL+L+PTRELA QI +V+ LGDYM A GG ++++++K+Q Sbjct: 96 EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 155 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIY+IF KL + QVV Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVFA 213 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 333 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T+ D LR+IE FY+ Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYN 393 Query: 386 IKINPMPANFAEL 398 + MP N A+L Sbjct: 394 TTVEEMPMNVADL 406 >gi|2370591|emb|CAA73167| (Y12590) translation initiation factor eIF4A I [Xenopus laevis] Length = 406 Score = 458 bits (1166), Expect = e-128 Identities = 224/373 (60%), Positives = 287/373 (76%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M+L + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 35 DDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQI 94 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM A GG ++ +++K+Q Sbjct: 95 ELDMKATQALVLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTDVRAEVQKLQSEAPHI 154 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF KL N QVV++ Sbjct: 155 VVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLSSNAQVVLL 212 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI Sbjct: 213 SATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 332 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAIN +T+ D L++IE FY+ Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDIETFYN 392 Query: 386 IKINPMPANFAEL 398 + MP N A+L Sbjct: 393 TTVEEMPMNVADL 405 >gi|124217|sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|283547|pir||S26281 translation initiation factor eIF-4A homolog - Caenorhabditis elegans >gi|6700|emb|CAA78102| (Z12116) unnamed protein product [Caenorhabditis elegans] >gi|532818 (U13876) C. elegans eukaryotic initiation factor 4a (EMBL:Z12116) [Caenorhabditis elegans] Length = 402 Score = 453 bits (1154), Expect = e-127 Identities = 216/373 (57%), Positives = 291/373 (77%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M LK++LLRGIY +GFE PS+IQ RAI +GKDVIAQAQSGTGKTATF++ +LQ I Sbjct: 32 DDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI 91 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D +QAL+++PTRELA QI +V+ LG+Y+NVN GG +++DD +K++ G Sbjct: 92 DHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA-GIHV 150 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DMI + L T ++M VLDEADE+LS GFK QIY++F +P++ QVV++ Sbjct: 151 VVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSR--GFKDQIYEVFRSMPQDVQVVLL 208 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM ++L+VT +FM +P++ILVK+DE++LEGI+Q+ +NV K+EWKFD LCD+Y+ + + Sbjct: 209 SATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNV 268 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNT++KVD L++++ ++ F V +HGDM Q ERD +M +FR+G SRVLI+TD+ Sbjct: 269 TQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDIL 328 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGRSGRFGRKGVAINF+T+ D +L+EIE +Y+ Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYT 388 Query: 386 IKINPMPANFAEL 398 +I MP + A+L Sbjct: 389 TQIEEMPESIADL 401 >gi|50823|emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - 407) [Mus musculus] Length = 407 Score = 453 bits (1153), Expect = e-127 Identities = 222/373 (59%), Positives = 287/373 (76%), Gaps = 2/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNLK+ LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ + Sbjct: 36 DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 ++ K+ QAL+L+PTRELA QI +V+ LGDYM A GG ++++++K+Q Sbjct: 96 EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 155 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIY+ KL + QVV++ Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYERVQKLNTSIQVVLL 213 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL++++ F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 274 TQAVIFLNTRRKVDWLTEKMQAIYFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 333 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T+ D LR IE FY+ Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRHIETFYN 393 Query: 386 IKINPMPANFAEL 398 + MP N A+L Sbjct: 394 TTVEEMPMNGADL 406 >gi|462401|sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|418925|pir||S30278 translation initiation factor eIF-4A - fruit fly (Drosophila melanogaster) >gi|311997|emb|CAA48790| (X69045) eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila melanogaster] Length = 402 Score = 451 bits (1147), Expect = e-126 Identities = 227/373 (60%), Positives = 290/373 (76%), Gaps = 4/373 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL+++LLRGIY YGFE PS+IQ RAI + G+DVIAQAQSGTGKTATF+I +LQ I Sbjct: 33 DDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI 92 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D ++ QALIL+PTRELA+QI +VV LG+YM V++ A GG +++D + ++ GC Sbjct: 93 DTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES-GCHV 151 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DMI ++ L+T+ +++ VLDEADE+LS GFK QI D+F LP + QV+++ Sbjct: 152 VVGTPGRVYDMINRK-LRTQYIKLFVLDEADEMLSR--GFKDQIQDVFKMLPPDVQVILL 208 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEV+R FM DPV ILVK++E++LEGIKQ+ VNV +E WK TLCD+YD+L+I Sbjct: 209 SATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSI 268 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNT++KVD L+Q + NF V +MHGDM+Q +R+ +M FR+G SRVLI+TD+ Sbjct: 269 TQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLL 328 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINFIT D L++IE+FY Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYH 388 Query: 386 IKINPMPANFAEL 398 I MPAN A+L Sbjct: 389 TTIEEMPANIADL 401 >gi|2500523|sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|2190248|gnl|PID|d1021203 (D84472) translation initiation factor [Candida albicans] Length = 397 Score = 450 bits (1146), Expect = e-126 Identities = 221/373 (59%), Positives = 291/373 (77%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + +NLK +++RGI+ YG+E PS+IQ RAI I G+DV+AQAQSGTGKTATFTI LQ I Sbjct: 26 DDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI 85 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + +K QALIL+PTRELA QI V+ +G Y+ V A GG ++ DD++ + G Q Sbjct: 86 NENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRS-GVQI 144 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRVLDMI+++ +T V+M +LDEADE+LS GFK+QIY+IF LP+ Q+V++ Sbjct: 145 VVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSS--GFKEQIYNIFRLLPETTQIVLL 202 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM +D+LEVT KFMN+PV+ILVK+DE++LEGIKQ+ +NV+ E++KFD LCD+YDS+++ Sbjct: 203 SATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISV 262 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNT+ KV++L+ +L + +F V ++H D+ Q ERD +M +FR+G SR+LISTD+ Sbjct: 263 TQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLL 322 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T D+ +REIEKFYS Sbjct: 323 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYS 382 Query: 386 IKINPMPANFAEL 398 +I MPA+ L Sbjct: 383 TQIEEMPADIGAL 395 >gi|2370593|emb|CAA73168| (Y12591) translation initiation factor eIF4A II [Xenopus laevis] Length = 413 Score = 450 bits (1144), Expect = e-125 Identities = 222/374 (59%), Positives = 287/374 (76%), Gaps = 3/374 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M+L + LLRGIY+YGFE PS+IQ RAI I G DVIAQAQSGTGKTATF I +LQ I Sbjct: 41 DDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQI 100 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 +L K QAL+L+PTRELA QI +VV LGDYM + A GG ++ +++K+Q Sbjct: 101 ELDMKATQALMLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHI 160 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAK-LPKNCQVVV 204 + GTPGRV DM+ ++ L + ++M VLDEADE+LS GFK QIYDIF K L N QVV+ Sbjct: 161 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKVLSMNAQVVL 218 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 +SATM D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LT Sbjct: 219 LSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 278 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 ITQ VIF NT++KVDWL++++ +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ Sbjct: 279 ITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 338 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFG KGVAIN +T+ D L++IE FY Sbjct: 339 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRTLKDIETFY 398 Query: 385 SIKINPMPANFAEL 398 + + MP N A+L Sbjct: 399 NTTVEEMPMNVADL 412 >gi|3097266|emb|CAA76677| (Y17186) translation initiation factor [Pisum sativum] Length = 407 Score = 449 bits (1143), Expect = e-125 Identities = 219/374 (58%), Positives = 295/374 (78%), Gaps = 4/374 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E M +K+DLLRGIY+YGFE PS+IQ RA+ II G+DVIAQAQSGTGKT+ + + Q + Sbjct: 36 EGMGIKEDLLRGIYAYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVV 95 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D +++QALI+SPTRELA+Q +V+ +GD++N+ A A GGK++ +D++K++ HG Sbjct: 96 DTSVREVQALIVSPTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLE-HGVHV 154 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 VSGTPGRV DMIK++ L+TR +++LVLDE+DE+LS GFK QIYD++ LP + QV ++ Sbjct: 155 VSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVCLI 212 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 S T+ +ILE+T KFM DPV+ILVKRDE++LEGIKQ+ V V+KE+WKFDTLC I+ L+ Sbjct: 213 SRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMILSP 272 Query: 266 TQCVIFC-NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 + +++ NTK+KVDWL++++ +NF V SMHGDM Q+ERD +M +FR G +RVLI+TDV Sbjct: 273 SLKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDV 332 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 WARG+DVQQVSLVINYDLP E YIHRIGRSGRFGRKGVAINF+ D+ LR+IE++Y Sbjct: 333 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYY 392 Query: 385 SIKINPMPANFAEL 398 S +I+ MP N +L Sbjct: 393 STQIDEMPMNIGDL 406 >gi|446778|prf||1912301A initiation factor eIF-4A [Drosophila melanogaster] Length = 402 Score = 448 bits (1141), Expect = e-125 Identities = 226/373 (60%), Positives = 289/373 (76%), Gaps = 4/373 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + MNL+++LLRGIY YGFE PS+IQ RAI + G+DVIAQAQSGTGKTATF+I +LQ I Sbjct: 33 DDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI 92 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D ++ QALIL+PTRELA+QI +VV LG+YM V++ A GG +++D + ++ GC Sbjct: 93 DTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES-GCHV 151 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DMI ++ L+T+ +++ VLDEADE+LS GFK QI D+F LP + QV+++ Sbjct: 152 VVGTPGRVYDMINRK-LRTQYIKLFVLDEADEMLSR--GFKDQIQDVFKMLPPDVQVILL 208 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEV+R FM DPV ILVK++E++LEGIKQ+ VNV +E WK TLCD+YD+L+I Sbjct: 209 SATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSI 268 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFC T++KVD L+Q + NF V +MHGDM+Q +R+ +M FR+G SRVLI+TD+ Sbjct: 269 TQSVIFCTTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLL 328 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINFIT D L++IE+FY Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYH 388 Query: 386 IKINPMPANFAEL 398 I MPAN A+L Sbjct: 389 TTIEEMPANIADL 401 >gi|1170511|sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10 (EIF-4A-10) >gi|1362118|pir||S55898 translation initiation factor eIF-4A.10 - common tobacco >gi|475213|emb|CAA55642| (X79009) translation initiation factor (eIF-4A) [Nicotiana tabacum] >gi|475216|emb|CAA55641| (X79008) translation initiation factor (eIF-4A) [Nicotiana tabacum] Length = 413 Score = 447 bits (1138), Expect = e-125 Identities = 223/373 (59%), Positives = 284/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+TK D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2500517|sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9 (EIF-4A-9) >gi|485951|emb|CAA55736| (X79135) NeIF-4A9 [Nicotiana tabacum] Length = 413 Score = 446 bits (1136), Expect = e-125 Identities = 222/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M LK++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D D QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 103 DYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILSSGVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGV+INF+T D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2500518|sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11 (EIF-4A-11) >gi|485987|emb|CAA55737| (X79136) NeIF-4A11 [Nicotiana tabacum] Length = 413 Score = 446 bits (1134), Expect = e-124 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIG SGRFGRKGV+INF+TK D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2119938|pir||S52023 translation initiation factor eIF-4A.14 - common tobacco Length = 413 Score = 446 bits (1134), Expect = e-124 Identities = 223/373 (59%), Positives = 284/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFM+ PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMSKPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+TK D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2119933|pir||S52018 translation initiation factor eIF-4A.11 - common tobacco Length = 413 Score = 445 bits (1133), Expect = e-124 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIG SGRFGRKGV+INF+TK D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2341061 (U73459) translational initiation factor eIF-4A [Zea mays] Length = 414 Score = 445 bits (1132), Expect = e-124 Identities = 222/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 44 DDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 104 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 162 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 163 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKIQVGVF 220 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKE+WK DTLCD+Y++L I Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 280 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+T+ + L +I+KFY+ Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFDIQKFYN 400 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 401 VLIEELPANVADL 413 >gi|2500520|sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14 (EIF-4A-14) >gi|485943|emb|CAA55742| (X79141) NeIF-4A14 [Nicotiana tabacum] Length = 413 Score = 444 bits (1131), Expect = e-124 Identities = 222/373 (59%), Positives = 284/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFM+ PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+TK D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2500522|sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|603190 (U17979) translation initiation factor eIF-4A [Zea mays] Length = 410 Score = 444 bits (1131), Expect = e-124 Identities = 219/373 (58%), Positives = 284/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 +SM L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 40 DSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 99 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 100 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 158 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 159 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKIQVGVF 216 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VN+DKE+WK DTLCD+Y++L I Sbjct: 217 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAI 276 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 277 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 336 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+T+ D + ++++FY+ Sbjct: 337 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYN 396 Query: 386 IKINPMPANFAEL 398 + + +PAN A+L Sbjct: 397 VTVEELPANVADL 409 >gi|2119934|pir||S52019 translation initiation factor eIF-4A.7 - common tobacco Length = 413 Score = 444 bits (1131), Expect = e-124 Identities = 222/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+ K D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2119932|pir||S52017 translation initiation factor eIF-4A.9 - common tobacco Length = 413 Score = 444 bits (1131), Expect = e-124 Identities = 221/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M LK++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 103 DYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILSSGVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGV+INF+T D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|1170506|sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) >gi|100275|pir||S22578 translation initiation factor eIF-4A - curled-leaved tobacco >gi|19697|emb|CAA43513| (X61205) nicotiana eukaryotic translation initiation factor 4A [Nicotiana plumbaginifolia] Length = 413 Score = 444 bits (1130), Expect = e-124 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAIN +TK D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2286151 (AF007580) translation initiation factor [Zea mays] Length = 414 Score = 443 bits (1128), Expect = e-124 Identities = 222/373 (59%), Positives = 282/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L+++LLRGIY YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 44 DDMGLQENLLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 104 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILGSGVHV 162 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 163 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPAKIQVGVF 220 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKE+WK DTLCD+Y++L I Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 280 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+T+ D + +I+KFY+ Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDIQKFYN 400 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 401 VLIEELPANVADL 413 >gi|2500516|sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7 (EIF-4A-7) >gi|485949|emb|CAA55738| (X79137) NeIF-4A7 [Nicotiana tabacum] Length = 413 Score = 443 bits (1128), Expect = e-124 Identities = 221/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+ K D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|2119935|pir||S52020 translation initiation factor eIF-4A.15 - common tobacco Length = 413 Score = 443 bits (1126), Expect = e-123 Identities = 221/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 103 AYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVRED-QRILSSGVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+TK D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|1170509|sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|478306|pir||JN0839 translation initiation factor eIF-4A - wheat Length = 414 Score = 442 bits (1125), Expect = e-123 Identities = 222/373 (59%), Positives = 282/373 (75%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 44 DDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 104 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 162 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV D++++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 163 VVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPGKIQVGVF 220 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNV+KEEWK DTLCD+Y++L I Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY HRIGRSGRFGRKGVAINF+T+ D L +I+KFY+ Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYN 400 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 401 VVIEELPANVADL 413 >gi|1170503|sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1) >gi|322503|pir||JC1452 translation initiation factor eIF-4A1 - Arabidopsis thaliana >gi|16554|emb|CAA46188| (X65052) eukaryotic translation initiation factor 4A-1 [Arabidopsis thaliana] Length = 412 Score = 442 bits (1124), Expect = e-123 Identities = 220/373 (58%), Positives = 283/373 (74%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 42 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 101 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 102 DFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHV 160 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+K+Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 161 VVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 218 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFM+ PV+ILVKRDE++LEGIKQ+ VNV+KEEWK +TLCD+Y++L I Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 278 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVIN+DLP ENY+HRIGRSGRFGRKGVAINF+T+ D L +I+KFY+ Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398 Query: 386 IKINPMPANFAEL 398 + + +P+N A+L Sbjct: 399 VVVEELPSNVADL 411 >gi|2500521|sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EIF-4A-15) >gi|485945|emb|CAA55739| (X79138) NeIF-4A15 [Nicotiana tabacum] Length = 413 Score = 441 bits (1123), Expect = e-123 Identities = 220/373 (58%), Positives = 283/373 (74%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 103 AYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVRED-QRILSSGVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVIN+DLP ENY+HRIGRSGRFGRKGVAINF+TK D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|3776021|emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis thaliana] Length = 441 Score = 441 bits (1122), Expect = e-123 Identities = 219/373 (58%), Positives = 282/373 (74%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+ DLLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 71 DAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 130 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D+ QAL+L+PTRELA QI +V++ LGDY+ V A A GG ++++D + +Q G Sbjct: 131 DISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS-GVHV 189 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV D++++Q L+ ++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 190 VVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKVQVGVF 247 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 248 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 307 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 308 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 367 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVIN+DLP ENY+HRIGRSGRFGRKGVAINF+T D + +I++FY+ Sbjct: 368 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYN 427 Query: 386 IKINPMPANFAEL 398 + + +P+N A+L Sbjct: 428 VVVEELPSNVADL 440 >gi|1170508|sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A-8 (EIF-4A-8) >gi|2119931|pir||S60244 translation initiation factor eIF-4A.8, anther-specific - common tobacco >gi|475219|emb|CAA55639| (X79004) translation initiation factor (eIF-4A) [Nicotiana tabacum] >gi|475221|emb|CAA55640| (X79005) translation initiation factor (eIF-4A) [Nicotiana tabacum] Length = 413 Score = 437 bits (1112), Expect = e-122 Identities = 219/373 (58%), Positives = 281/373 (74%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 103 DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILAAGVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGRV DM+++Q L+ ++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 IVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSR--GFKDQIYDIFQMLPTKVQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + L++TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+T D L +I+KFY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYN 399 Query: 386 IKINPMPANFAEL 398 + I +P+N A+L Sbjct: 400 VIIEELPSNVADL 412 >gi|547712|sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|542153|pir||S38358 translation initiation factor eIF-4A - rice >gi|303844|gnl|PID|d1002642 (D12627) eukaryotic initiation factor 4A [Oryza sativa] Length = 413 Score = 436 bits (1110), Expect = e-121 Identities = 221/373 (59%), Positives = 281/373 (75%), Gaps = 4/373 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 44 DDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D +++ G Sbjct: 104 DYAVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 162 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ ++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 163 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKIQVGVF 220 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNV+KEEWK DTLCD+Y++L I Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT+K VDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 281 TQSVIFVNTRK-VDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGVAINF+T+ D L +I++FY+ Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN 399 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 400 VVIEELPANVADL 412 >gi|1170505|sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) >gi|322504|pir||JC1453 translation initiation factor eIF-4A2 - Arabidopsis thaliana >gi|16556|emb|CAA46189| (X65053) eukaryotic translation initiation factor 4A-2 [Arabidopsis thaliana] Length = 412 Score = 434 bits (1103), Expect = e-121 Identities = 217/373 (58%), Positives = 280/373 (74%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 42 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 101 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D QAL+L+PTRELA QI +V++ LGDY V A GG ++++D + +Q G Sbjct: 102 DYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA-GVHV 160 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ ++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 161 VVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 218 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFM+ PV+ILVKRDE++LEGIKQ+ VNV+KE+WK +TLCD+Y++L I Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAI 278 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVIN+DLP ENY+HRIGRSGRFGRKGVAINF+T D L +I+KFY+ Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYN 398 Query: 386 IKINPMPANFAEL 398 + + +P+N A+L Sbjct: 399 VVVEELPSNVADL 411 >gi|124218|sp|P10081|IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (STIMULATOR FACTOR I 37 KD COMPONENT) (P37) >gi|72889|pir||FIBY1 translation initiation factor eIF-4A - yeast (Saccharomyces cerevisiae) >gi|4621|emb|CAA31301| (X12813) TIF1 gene product (AA 1 - 395) [Saccharomyces cerevisiae] >gi|4623|emb|CAA31302| (X12814) TIF2 gene product (AA 1 - 395) [Saccharomyces cerevisiae] >gi|486521|emb|CAA82138| (Z28284) ORF YKR059w [Saccharomyces cerevisiae] >gi|854559|emb|CAA60817| (X87371) translation initiation factor [Saccharomyces cerevisiae] >gi|1015544|emb|CAA89433| (Z49413) ORF YJL138c [Saccharomyces cerevisiae] Length = 395 Score = 423 bits (1077), Expect = e-118 Identities = 212/373 (56%), Positives = 281/373 (74%), Gaps = 4/373 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L ++LLRG++ YGFE PS+IQ RAI II G DV+AQAQSGTGKT TF+I LQ I Sbjct: 25 DDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 84 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D K QAL+L+PTRELA QI +VV L +M++ A GG + +D + ++ Q Sbjct: 85 DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD--AQI 142 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV D I+++ +T ++M +LDEADE+LS GFK+QIY IF LP QVV++ Sbjct: 143 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS--GFKEQIYQIFTLLPPTTQVVLL 200 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM D+LEVT KFM +PV+ILVK+DE++LEGIKQ+ VNV++EE+K++ L D+YDS+++ Sbjct: 201 SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISV 260 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNT++KV+ L+ +L F V +++ D+ Q+ERD +M +FR+G SR+LISTD+ Sbjct: 261 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 320 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T D+ +RE+EKFYS Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 380 Query: 386 IKINPMPANFAEL 398 +I +P++ A L Sbjct: 381 TQIEELPSDIATL 393 >gi|2150025 (AF001211) translation initiation factor [Cryptosporidium parvum] >gi|2155304 (AF001378) translation initiation factor [Cryptosporidium parvum] Length = 405 Score = 420 bits (1068), Expect = e-117 Identities = 207/373 (55%), Positives = 277/373 (73%), Gaps = 3/373 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E++NL+ DLLRGI++YGFE PS+IQ R I I+ G D I QAQSGTGKTATF I LQ I Sbjct: 34 EALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKI 93 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D Q L+L+PTRELA QI +V LGDY + A GG +++DD+ K+ K G Sbjct: 94 DYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKL-KSGVHM 152 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+ K L+ N+++ +LDEADE+LS GFK QI+DIF KLP++ QV + Sbjct: 153 VVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSR--GFKVQIHDIFKKLPQDVQVALF 210 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM +IL +T +FM DP +ILVK++E++LEGI+Q+ V V+K+EWK DTL D+Y++LTI Sbjct: 211 SATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTI 270 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +I+CNT+++VD L++++ + +F SMHGDM Q++R+ +M FR+G SRVLI+TD+ Sbjct: 271 VQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLL 330 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP E YIHRIGRSGRFG+KGV+INF+T D+ LR+IE+ Y+ Sbjct: 331 ARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIERHYN 390 Query: 386 IKINPMPANFAEL 398 +I MP ++ Sbjct: 391 TQIEEMPMGITDI 403 >gi|1688326 (U78759) IfdA [Dictyostelium discoideum] Length = 395 Score = 411 bits (1046), Expect = e-114 Identities = 207/367 (56%), Positives = 274/367 (74%), Gaps = 5/367 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L DLLRGIYSYGFE PS+IQ RAI + G D+IAQAQSGTGKTATFT+G+L I Sbjct: 27 DNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRI 86 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D+ QALI++PTRELA QI +VV LG+Y+++ ++A GG + DD++ +Q G Sbjct: 87 DISVLKCQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDIQALQS-GVHV 145 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV +M+ + ++ +++ LDEADE+LS GFK QIY+IF LPK QV + Sbjct: 146 VVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSR--GFKDQIYEIFRFLPKTIQVGLF 203 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + L +T KFM +PV ILVK+DE++LEGI+Q+ VNV E+ KF+ L D+Y++L+I Sbjct: 204 SATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTDLYETLSI 263 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIFCNT++KVDWL+ ++ + F V S HGD Q++RD ++ FR+G +RVLI+TD+ Sbjct: 264 TQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSGATRVLITTDLL 321 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVIN+DLP IENYIHRIGRSGRFGRKGVAINFIT A+ ++ E+ + Y+ Sbjct: 322 ARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSRHYN 381 Query: 386 IKINPMP 392 I MP Sbjct: 382 TYIAEMP 388 >gi|3002483 (AE001274) EIF-4A; L3162.6 [Leishmania major] >gi|3002484 (AE001274) EIF-4A; L3162.5 [Leishmania major] Length = 403 Score = 409 bits (1040), Expect = e-113 Identities = 209/374 (55%), Positives = 283/374 (74%), Gaps = 7/374 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L +LLRGIYSYGFE PSSIQ RAI G D+IAQAQSGTGKT F+IGLLQ + Sbjct: 29 DDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRL 88 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAIT--GGKTLKDDLKKMQKHG 142 D R +Q L+LSPTRELA Q +V+ +G+++ N + F T GG ++DDL+K+Q Sbjct: 89 DFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGV 148 Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202 AV GTPGRV D+IK+ L+T ++++LVLDEADE+LS+ GF QIY+IF LPK+ QV Sbjct: 149 IVAV-GTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQ--GFADQIYEIFRFLPKDIQV 205 Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262 + SATM +++LE+T+KFM DPV+ILVKR+ ++LEGIKQ+ + V+ EE K DTL D+Y++ Sbjct: 206 ALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYET 264 Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 ++I Q VIF NT++KVDW++++L QSN V SMH +M + +R++VMN FR+G SRVL++T Sbjct: 265 VSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTT 324 Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 D+ ARGIDV V++VIN+DLP ENY+HRIGR GR+GRKGVAINF+T+ D+ L EIE Sbjct: 325 DLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEA 384 Query: 383 FYSIKINPMPANFA 396 Y +I+ +P +FA Sbjct: 385 HYHTQIDELPVDFA 398 >gi|2500514|sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|643070 (U19888) ribosomal DEAD box protein [Leishmania braziliensis] Length = 403 Score = 406 bits (1031), Expect = e-112 Identities = 205/374 (54%), Positives = 280/374 (74%), Gaps = 7/374 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + M L +LLRGIYSYGFE PSSIQ RAI G D+IAQAQSGTGKT F+IGLLQ + Sbjct: 29 DDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRL 88 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAF---AITGGKTLKDDLKKMQKHG 142 D R +Q L+LSPTRELA Q +V+ +G++++ +A GG ++DDL+K+Q G Sbjct: 89 DFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQA-G 147 Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202 GTPGRV D+IK+ L+T ++++LVLDEADE+LS+ GF QIY+IF LPK+ QV Sbjct: 148 VVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQ--GFADQIYEIFRFLPKDIQV 205 Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262 + SATM +++LE+T+KFM DPV+ILVKR+ ++LEGIKQ+ + V+ EE K DTL D+Y++ Sbjct: 206 ALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYET 264 Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 ++I Q VIF NT++KVDW++++L QSN V SMH +M + +R++VMN FR+G SRVL++T Sbjct: 265 VSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTT 324 Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 D+ ARGIDV V++VIN+DLP ENY+HRIGR GR+G KGVAINF+T+ D+ L EIE Sbjct: 325 DLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVELLHEIEG 384 Query: 383 FYSIKINPMPANFA 396 Y +I+ +P +FA Sbjct: 385 HYHTQIDELPVDFA 398 >gi|2119937|pir||S52022 translation initiation factor eIF-4A.13 - common tobacco (fragment) Length = 355 Score = 374 bits (949), Expect = e-103 Identities = 187/316 (59%), Positives = 239/316 (75%), Gaps = 3/316 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNQPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYD 341 ARGIDVQQVSLVINYD Sbjct: 340 ARGIDVQQVSLVINYD 355 >gi|2500519|sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A-13 (EIF-4A-13) >gi|485941|emb|CAA55741| (X79140) NeIF-4A13 [Nicotiana tabacum] Length = 355 Score = 372 bits (946), Expect = e-102 Identities = 186/316 (58%), Positives = 239/316 (74%), Gaps = 3/316 (0%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++M L+++LLRGIY+YGFE PS+IQ R I G DVI QAQSGTGKTATF G+LQ + Sbjct: 43 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D + QAL+L+PTRELA QI +V++ LGDY+ V A GG ++++D + +Q G Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ +++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 220 SATMPPEALEITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 326 ARGIDVQQVSLVINYD 341 ARGIDVQQVSLVINYD Sbjct: 340 ARGIDVQQVSLVINYD 355 >gi|2119936|pir||S52021 translation initiation factor eIF-4A.6 - common tobacco (fragment) Length = 254 Score = 328 bits (833), Expect = 3e-89 Identities = 162/253 (64%), Positives = 200/253 (79%), Gaps = 2/253 (0%) Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV V Sbjct: 3 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 60 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 61 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 120 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 121 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 180 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGV+INF+TK D L +I+KFY+ Sbjct: 181 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYN 240 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 241 VVIEELPANVADL 253 >gi|2500515|sp|Q40469|IF46_TOBAC EUKARYOTIC INITIATION FACTOR 4A-6 (EIF-4A-6) >gi|485947|emb|CAA55740| (X79139) NeIF-4A6 [Nicotiana tabacum] Length = 253 Score = 328 bits (832), Expect = 4e-89 Identities = 161/253 (63%), Positives = 200/253 (78%), Gaps = 2/253 (0%) Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRV DM+++Q L+ N++M VLDEADE+LS GFK QIYDIF LP QV + Sbjct: 3 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGIF 60 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I Sbjct: 61 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 120 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 TQ VIF NT++KVDWL+ ++ + V + HGDM Q RD +M +FR+G SRVLI+TD+ Sbjct: 121 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 180 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGIDVQQVSLVINYDLP ENY+HRIGRSGRFGRKGV+INF+TK D L +I+KFY+ Sbjct: 181 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYN 240 Query: 386 IKINPMPANFAEL 398 + I +PAN A+L Sbjct: 241 VVIEELPANVADL 253 >gi|532817 (U13876) highly similar to eukaryotic initiation factor 4a (EIF-4A) [Caenorhabditis elegans] Length = 363 Score = 324 bits (821), Expect = 8e-88 Identities = 163/370 (44%), Positives = 250/370 (67%), Gaps = 12/370 (3%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 M LK++LLRGIY +GFE PS+IQ A+ +GKDV Q+Q+G+GKT I +LQ ID Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 LQ ++L+P R +A + + +K+LG +NVNA + T ++D + Sbjct: 61 EDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATCLGFDTTAENDKIS------HVLM 114 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 GTP L I T ++M VLDEADE+LS+ GFK QIY++F +P++ QVV++SA Sbjct: 115 GTPKDFLSNIPSD---TSRIKMFVLDEADEMLSK--GFKDQIYEVFRSMPQDVQVVLLSA 169 Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 TM ++L+VT +FM DP++ILVK+DE++LEGI+Q+ +NV K+EWKF+ LCD+ + TQ Sbjct: 170 TMPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQ 229 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 +IFCNT+++V L+++L+ V HG+M+ ER+ ++ DF + ++RVL++TD+ AR Sbjct: 230 ALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMAR 289 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387 G+++++ SL+INYD+ +ENY+ R GR G FG KG+ I+F T+ D++ L++IE YS + Sbjct: 290 GMNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIENHYSTR 348 Query: 388 INPMPANFAE 397 I MP +F E Sbjct: 349 IEEMPESFLE 358 >gi|2136088|pir||I52691 RCK - human >gi|458727|gnl|PID|d1005007 (D17532) RCK [Homo sapiens] Length = 472 Score = 291 bits (738), Expect = 4e-78 Identities = 152/370 (41%), Positives = 239/370 (64%), Gaps = 6/370 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ G+E PS IQ +I +SG+D++A+A++GTGK+ + I LL+ + Sbjct: 88 EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 147 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144 DL+K ++QA+++ PTRELA Q+ Q+ + +M A TGG L+DD+ ++ Sbjct: 148 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 206 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 V TPGR+LD+IKK + + +VQM+VLDEAD+LLS+ F Q + DI LPKN Q+++ Sbjct: 207 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 264 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + P +I + +E++L+G+ QY V + + K L ++ L Sbjct: 265 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 322 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 I Q +IFCN+ ++V+ L++++ Q ++ +H M+QE R++V +DFR G R L+ TD+ Sbjct: 323 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 382 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG G+AIN IT D L+ IE+ Sbjct: 383 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 442 Query: 385 SIKINPMPAN 394 +I P+P+N Sbjct: 443 GTEIKPIPSN 452 >gi|129376|sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK) (DEAD BOX PROTEIN 6) >gi|106335|pir||S22651 hypothetical protein - human Length = 483 Score = 291 bits (738), Expect = 4e-78 Identities = 152/370 (41%), Positives = 239/370 (64%), Gaps = 6/370 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ G+E PS IQ +I +SG+D++A+A++GTGK+ + I LL+ + Sbjct: 99 EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 158 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144 DL+K ++QA+++ PTRELA Q+ Q+ + +M A TGG L+DD+ ++ Sbjct: 159 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 217 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 V TPGR+LD+IKK + + +VQM+VLDEAD+LLS+ F Q + DI LPKN Q+++ Sbjct: 218 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 275 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + P +I + +E++L+G+ QY V + + K L ++ L Sbjct: 276 YSATFPLSVQKFMNSHLEKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 333 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 I Q +IFCN+ ++V+ L++++ Q ++ +H M+QE R++V +DFR G R L+ TD+ Sbjct: 334 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 393 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG G+AIN IT D L+ IE+ Sbjct: 394 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 453 Query: 385 SIKINPMPAN 394 +I P+P+N Sbjct: 454 GTEIKPIPSN 463 >gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK HOMOLOG) (DEAD BOX PROTEIN 6) >gi|940408|gnl|PID|d1009723 (D50494) RCK [Mus musculus] Length = 483 Score = 291 bits (738), Expect = 4e-78 Identities = 152/370 (41%), Positives = 239/370 (64%), Gaps = 6/370 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ G+E PS IQ +I +SG+D++A+A++GTGK+ + I LL+ + Sbjct: 99 EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 158 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144 DL+K ++QA+++ PTRELA Q+ Q+ + +M A TGG L+DD+ ++ Sbjct: 159 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 217 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 V TPGR+LD+IKK + + +VQM+VLDEAD+LLS+ F Q + DI LPKN Q+++ Sbjct: 218 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 275 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + P +I + +E++L+G+ QY V + + K L ++ L Sbjct: 276 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 333 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 I Q +IFCN+ ++V+ L++++ Q ++ +H M+QE R++V +DFR G R L+ TD+ Sbjct: 334 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 393 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG G+AIN IT D L+ IE+ Sbjct: 394 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 453 Query: 385 SIKINPMPAN 394 +I P+P+N Sbjct: 454 GTEIKPIPSN 463 >gi|1709533|sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 >gi|1044938|emb|CAA63149| (X92421) RNA helicase p54 [Xenopus laevis] Length = 481 Score = 288 bits (730), Expect = 4e-77 Identities = 151/370 (40%), Positives = 238/370 (63%), Gaps = 6/370 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ G+E PS IQ +I +SG+D++A+A++GTGKT + I LL+ + Sbjct: 98 EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLERL 157 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144 DL+K +QA+++ PTRELA Q+ Q+ + +M A TGG L+DD+ ++ Sbjct: 158 DLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 216 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 V TPGR+LD+IKK + + ++QM+VLDEAD+LLS+ F Q + DI LPKN Q+++ Sbjct: 217 VVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQD--FMQIMEDIIMTLPKNRQILL 274 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + P +I + +E++L+G+ QY V + + K L ++ L Sbjct: 275 YSATFPLSVQKFMTLHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 332 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 I Q +IFCN+ ++V+ L++++ Q ++ +H M+QE R++V +DFR G R L+ TD+ Sbjct: 333 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 392 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG G+AIN IT D L+ IE+ Sbjct: 393 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 452 Query: 385 SIKINPMPAN 394 +I P+P++ Sbjct: 453 GTEIKPIPSS 462 >gi|2745894|gb|AAB94769| (AF038995) putative RNA helicase RCK [Mus musculus] Length = 453 Score = 286 bits (724), Expect = 2e-76 Identities = 149/370 (40%), Positives = 237/370 (63%), Gaps = 6/370 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ G+E PS IQ +I +SG+D++A+A++GTGK+ + I LL+ + Sbjct: 74 EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 133 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144 DL+K ++QA+++ PTRELA Q+ Q+ + +M A TG L+DD+ ++ Sbjct: 134 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGPTNLRDDIMRLDDT-VH 192 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 V TPGR+LD+IKK + + +VQM+VLDEAD+LLS+ F Q + DI LPKN Q+++ Sbjct: 193 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 250 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + P +I + +E++L+G+ QY V + + K L ++ L Sbjct: 251 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 308 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 I Q +IFCN+ ++V+ L++++ Q ++ +H M+QE R++V +DF G R L+ TD+ Sbjct: 309 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFENGLCRNLVCTDL 368 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 + RGID+Q V++VIN+D P++ E Y+HR+GRSGRFG G+AIN IT D L+ IE+ Sbjct: 369 FTRGIDIQAVNVVINFDFPKLAETYLHRVGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 428 Query: 385 SIKINPMPAN 394 +I P+P+N Sbjct: 429 GTEIKPIPSN 438 >gi|126938|sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE >gi|157594 (M59926) RNA helicase [Drosophila melanogaster] Length = 459 Score = 280 bits (710), Expect = 8e-75 Identities = 150/367 (40%), Positives = 230/367 (61%), Gaps = 5/367 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ G+E PS IQ AI +SGKDV+A+A++GTGKT + I +L+ I Sbjct: 61 EEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQI 120 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D K +QAL++ PTRELA Q Q+ L ++++ TGG LKDD+ ++ + Q Sbjct: 121 DPTKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQK-VQL 179 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + TPGR+LD++ K++ + ++LVLDEAD+LLS L F+ + + KLPK+ Q+++ Sbjct: 180 IIATPGRILDLMDKKVADMSHCRILVLDEADKLLS--LDFQGMLDHVILKLPKDPQILLF 237 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT + K + +P +I + +E++L+G+ QY V +E K L ++ L I Sbjct: 238 SATFPLTVKNFMEKHLREPYEINLM-EELTLKGVTQYYAFV-QERQKVHCLNTLFSKLQI 295 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IFCN+ ++V+ L++++ + + +H M Q R++V +DFR G R L+ +D++ Sbjct: 296 NQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLF 355 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 RGIDVQ V++VIN+D P + E Y+HRIGRSGRFG G+AIN IT D L IEK Sbjct: 356 TRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELG 415 Query: 386 IKINPMP 392 +I P+P Sbjct: 416 TEIKPIP 422 >gi|3776001|emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis thaliana] Length = 498 Score = 280 bits (709), Expect = 1e-74 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 5/369 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E+ LK DLL+GIY GFE PS IQ +I ++G D++A+A++GTGKT F I +L+ I Sbjct: 127 ENYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D +QA+IL PTRELA Q QV K L Y+N+ TGG +L+DD+ ++ + Sbjct: 187 DPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQP-VHL 245 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGR+LD+ KK + ++ MLV+DEAD+LLS F+ + ++ LP+N Q ++ Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE--FQPSLEELIQFLPQNRQFLMF 303 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT + + + P I + D+++L G+ QY V++ + K L ++ L I Sbjct: 304 SATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQI 361 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IFCN+ +V+ L++++ + ++ +H M Q+ R++V ++FR G R L+ TD++ Sbjct: 362 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 RGID+Q V++VIN+D P E+Y+HR+GRSGRFG G+A+N +T D K+ + E+ Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG 481 Query: 386 IKINPMPAN 394 +I P+P+N Sbjct: 482 TEIKPIPSN 490 >gi|1174456|sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE STE13 >gi|1076910|pir||S46654 probable RNA helicase - fission yeast (Schizosaccharomyces pombe) >gi|703066|gnl|PID|d1006741 (D29795) RNA helicase [Schizosaccharomyces pombe] >gi|4176526|emb|CAA22882| (AL035263) putative atp-dependent rna helicase ste13p [Schizosaccharomyces pombe] Length = 485 Score = 280 bits (708), Expect = 1e-74 Identities = 154/367 (41%), Positives = 222/367 (59%), Gaps = 5/367 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ GFE PS IQ +I +SG+D++A+A++GTGKTA F I L+ + Sbjct: 47 EDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV 106 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D +K +Q LIL PTRELA Q QV K LG +MNV TGG TL+DD+ ++ Sbjct: 107 DTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDT-VHI 165 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRVLD+ K + V+DEAD+LLS F I + + PKN Q+ + Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE--FTPIIEQLLSYFPKNRQISLY 223 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT + K +N P +I + DE++L G+ QY VD+ + K L ++ L I Sbjct: 224 SATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFVDESQ-KVHCLNTLFSKLQI 281 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IFCN+ +V+ L++++ + ++ H M Q R++V ++FR G R L+ +D+ Sbjct: 282 NQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 RGID+Q V++VIN+D P+ E Y+HRIGRSGRFG +G+AI+FI+ AD L IE Sbjct: 342 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELG 401 Query: 386 IKINPMP 392 +I P+P Sbjct: 402 TEIQPIP 408 >gi|103314|pir||A39157 probable helicase (EC 3.6.1.-) - fruit fly (Drosophila melanogaster) (fragment) Length = 369 Score = 280 bits (708), Expect = 1e-74 Identities = 149/363 (41%), Positives = 229/363 (63%), Gaps = 5/363 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LL GI+ G+E PS IQ AI +SGKDV+A+A++GTGKT + I +L+ ID K Sbjct: 3 LKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTK 62 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGT 149 +QAL++ PTRELA Q Q+ L ++++ TGG LKDD+ ++ + Q + T Sbjct: 63 DYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQK-VQLIIAT 121 Query: 150 PGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATM 209 PGR+LD++ K++ + ++LVLDEAD+LLS L F+ + + KLPK+ Q+++ SAT Sbjct: 122 PGRILDLMDKKVADMSHCRILVLDEADKLLS--LDFQGMLDHVILKLPKDPQILLFSATF 179 Query: 210 NKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCV 269 + K + +P +I + +E++L+G+ QY V +E K L ++ L I Q + Sbjct: 180 PLTVKNFMEKHLREPYEINLM-EELTLKGVTQYYAFV-QERQKVHCLNTLFSKLQINQSI 237 Query: 270 IFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGI 329 IFCN+ ++V+ L++++ + + +H M Q R++V +DFR G R L+ +D++ RGI Sbjct: 238 IFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGI 297 Query: 330 DVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN 389 DVQ V++VIN+D P + E Y+HRIGRSGRFG G+AIN IT D L IEK +I Sbjct: 298 DVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIK 357 Query: 390 PMP 392 P+P Sbjct: 358 PIP 360 >gi|3386613 (AC004665) putative ATP-dependent RNA helicase [Arabidopsis thaliana] Length = 528 Score = 279 bits (707), Expect = 2e-74 Identities = 145/368 (39%), Positives = 230/368 (62%), Gaps = 5/368 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK DLLRGIY GFE PS IQ +I ++G D++A+A++GTGKT F I L+ I Sbjct: 157 EDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI 216 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D +QA+IL PTRELA Q QV K L Y+ + TGG +L+DD+ ++ + Sbjct: 217 DPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQP-VHL 275 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGR+LD+ KK + ++ MLV+DEAD+LLS + F+ I ++ LP++ Q+++ Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLS--VEFQPSIEELIQFLPESRQILMF 333 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT + +++ P I+ D+++L G+ QY V++ + K L ++ L I Sbjct: 334 SATFPVTVKSFKDRYLKKPY-IINLMDQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQI 391 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IFCN+ +V+ L++++ + ++ +H M Q+ R++V +DFR G R L+ TD++ Sbjct: 392 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLF 451 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 RGID+Q V++VIN+D P E+Y+HR+GRSGRFG G+A+N +T D K+ + E+ Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG 511 Query: 386 IKINPMPA 393 +I P+P+ Sbjct: 512 TEIKPIPS 519 >gi|3775993|emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis thaliana] Length = 505 Score = 278 bits (703), Expect = 5e-74 Identities = 145/367 (39%), Positives = 233/367 (62%), Gaps = 5/367 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GIY GFE PS IQ +I ++G+D++A+A++GTGKTA F I +L+ I Sbjct: 134 EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 D +QA+I+ PTRELA Q QV K LG ++ + TGG +LKDD+ ++ + Sbjct: 194 DQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQP-VHL 252 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGR+LD+ KK + ++ +LV+DEAD+LLS+ F+ + + + LP++ Q+++ Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE--FQPSVEHLISFLPESRQILMF 310 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT + + +F+ +P I + DE++L+GI Q+ V++ + K L ++ L I Sbjct: 311 SATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSKLQI 368 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IFCN+ +V+ L++++ + ++ +H M Q+ R++V +DFR G R L+ TD++ Sbjct: 369 NQSIIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 428 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 RGID+Q V++VIN+D P+ E Y+HR+GRSGRFG G+A+N IT D L IE+ Sbjct: 429 TRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELG 488 Query: 386 IKINPMP 392 +I +P Sbjct: 489 TEIKQIP 495 >gi|1175426|sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C12C2.06 >gi|984214|emb|CAA90819| (Z54140) probable ATP-dependent RNA helicase [Schizosaccharomyces pombe] Length = 503 Score = 274 bits (693), Expect = 8e-73 Identities = 151/379 (39%), Positives = 235/379 (61%), Gaps = 17/379 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83 E + LK +LL+GIYS F+ PS IQ +A+ ++S +++I Q+QSGTGKTA F + +L Sbjct: 117 EELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLS 176 Query: 84 AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVN-AFAITGGKTLKDDLKKMQKHG 142 +D QA+ L+P+RELA QI VV +G Y V AF I KD + K K Sbjct: 177 RVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI------KDSVPKGAKID 230 Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202 Q V GTPG V+D++K++ L R++++ VLDEAD +L + G Q I LP+N Q+ Sbjct: 231 AQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ-GLGDQSMRIKHLLPRNTQI 289 Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262 V+ SAT ++ + + +F + +I +K +E+S+EGIKQ ++ EE K++ L ++Y Sbjct: 290 VLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL 349 Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 LTI Q +IFC K + +++R+ V + G+++ +RD +M+ FR G S+VL++T Sbjct: 350 LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT 409 Query: 323 DVWARGIDVQQVSLVINYDLP------EIIENYIHRIGRSGRFGRKGVAINFI-TKADLA 375 +V ARGIDV QV+LV+NYD+P + Y+HRIGR+GRFGR GV+INF+ K Sbjct: 410 NVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWE 469 Query: 376 KLREIEKFYSIKINPMPAN 394 ++ I++++ I +P + Sbjct: 470 EMNAIQEYFQRPITRVPTD 488 >gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE DHH1 >gi|320822|pir||S31229 probable RNA helicase DHH1 - yeast (Saccharomyces cerevisiae) >gi|4353|emb|CAA46853| (X66057) RNA-helicase of the DEAD-BOX family [Saccharomyces cerevisiae] >gi|1061279|emb|CAA91586| (Z67750) putative RNA helicase [Saccharomyces cerevisiae] >gi|1431254|emb|CAA98734| (Z74208) ORF YDL160c [Saccharomyces cerevisiae] Length = 506 Score = 272 bits (688), Expect = 3e-72 Identities = 147/368 (39%), Positives = 226/368 (60%), Gaps = 5/368 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GI+ GFE PS IQ AI I+G+D++A+A++GTGKTA F I L+ + Sbjct: 49 EDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV 108 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + +QALI+ PTRELA Q QVV+ LG + ++ TGG L+DD+ ++ + Sbjct: 109 KPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET-VHI 167 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGRVLD+ +++ + + ++DEAD++LS FK I I + LP Q ++ Sbjct: 168 LVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILSFLPPTHQSLLF 225 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT + E K ++ P +I + +E++L+GI QY V++ + K L ++ L I Sbjct: 226 SATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEERQ-KLHCLNTLFSKLQI 283 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IFCN+ +V+ L++++ ++ H MKQ+ER+KV ++FR G R L+ +D+ Sbjct: 284 NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL 343 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 RGID+Q V++VIN+D P+ E Y+HRIGRSGRFG G+AIN I D L +IE+ Sbjct: 344 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 403 Query: 386 IKINPMPA 393 +I +PA Sbjct: 404 TEIAAIPA 411 >gi|407992 (L25125) RNA helicase [Mus musculus] Length = 478 Score = 268 bits (677), Expect = 6e-71 Identities = 151/375 (40%), Positives = 234/375 (62%), Gaps = 18/375 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83 E + LK LL+G+Y+ GF PS IQ A+ +++ +++IAQ+QSGTGKTA F + +L Sbjct: 94 EELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 153 Query: 84 AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVN--AFAITGGKTLKDDLKKMQKH 141 ++ + Q L LSPT ELA Q G+V++ +G + A+A+ G K L++ QK Sbjct: 154 RVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKV 208 Query: 142 GCQAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 Q V GTPG VLD K + + + +++ VLDEAD +++ T G + Q I +P+NC Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA-TQGHQDQSIRIQRIVPRNC 267 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260 Q+++ SAT + + +K + DP I +KR+E +L+ IKQY V + E KF LC++Y Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLY 327 Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320 ++TI Q +IFC+T+K WL+ L + V + G+M E+R V+ FR G +VL+ Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387 Query: 321 STDVWARGIDVQQVSLVINYDLP------EIIENYIHRIGRSGRFGRKGVAINFI-TKAD 373 +T+V ARGIDV+QVS+VIN+DLP E Y+HRIGR+GRFG++G+A+N + +K Sbjct: 388 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 447 Query: 374 LAKLREIEKFYSIKI 388 + L I++ ++ KI Sbjct: 448 MNILNRIQEHFNKKI 462 >gi|3108197 (AF005239) DEAD-box helicase [Drosophila melanogaster] Length = 460 Score = 261 bits (659), Expect = 8e-69 Identities = 146/384 (38%), Positives = 236/384 (61%), Gaps = 18/384 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83 E+++LK LL+GIY+ GF PS IQ A+ +++ +++IAQ+QSGTGKTA F + +L Sbjct: 76 EALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLS 135 Query: 84 AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA--FAITGGKTLKDDLKKMQKH 141 +++ Q L LSPT ELA Q G+V +G + FA+ G + D KK+++H Sbjct: 136 RVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEV--DRSKKIEEH 193 Query: 142 GCQAVSGTPGRVLDM-IKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 + GTPG++LD IK ++ + + + VLDEAD +++ T G Q I L +C Sbjct: 194 ---ILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIA-TQGHHDQCIRIHKMLNPHC 249 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260 Q++ SAT K++++ R + DP I + R+E SLE IKQY V EE K++ + +IY Sbjct: 250 QMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKYNAIQNIY 309 Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320 +++ Q +IFC+TK+ WL+ ++ +V + GD+ +R V++ FR+G +VLI Sbjct: 310 GCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKVLI 369 Query: 321 STDVWARGIDVQQVSLVINYDLPEII------ENYIHRIGRSGRFGRKGVAINFITKADL 374 +T++ +RGID++Q+ +V+N+DLP + E Y+HRIGR+GRFG+ G+AIN IT Sbjct: 370 TTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKT 429 Query: 375 AKL-REIEKFYSIKINPMPANFAE 397 K+ +IEK ++ KI + + A+ Sbjct: 430 MKVCSDIEKHFNKKIEVLNTDSAD 453 >gi|1177010|sp|P42305|YXIN_BACSU PROBABLE RNA HELICASE IN WAPA-LICT INTERGENIC REGION >gi|665989|gnl|PID|d1012360 (D83026) homologous to ATP dependent RNA helicase DeaD of E. coli; hypothetical [Bacillus subtilis] >gi|2636457|emb|CAB15947| (Z99124) ATP-dependent RNA helicase [Bacillus subtilis] Length = 479 Score = 257 bits (651), Expect = 7e-68 Identities = 144/368 (39%), Positives = 222/368 (60%), Gaps = 4/368 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++ + D+LR + G+ P+ +Q I + KD++ ++Q+G+GKTA+F I L + Sbjct: 5 KNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELA 64 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + + QALIL+PTRELA Q+ + + N+G + + A A+ G K+ D K K Sbjct: 65 NWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFG-KSSFDKQKAELKQKSHI 123 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 V GTPGRVLD I+K L + LV+DEADE+L+ +GF +Q+ I LP ++ Sbjct: 124 VVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLN--MGFIEQVEAIIKHLPTERTTMLF 181 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SAT+ +DI +++R++M +P I VK ++ I+ V+ V +EE KF L D+ + Sbjct: 182 SATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQV-REENKFSLLKDVLMTENP 240 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 C+IFC TK+ V+ L+ L + +HG M QE+R VMN+F+ G R L++TDV Sbjct: 241 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 300 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARGID++ +SLVINYDLP E+Y+HR GR+GR G KG AI+F+T + L +IE++ Sbjct: 301 ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 360 Query: 386 IKINPMPA 393 +I + A Sbjct: 361 FEIPKIEA 368 >gi|1708152|sp|P20449|DBP5_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP5 (HELICASE CA5/6) >gi|2133053|pir||S66920 probable RNA helicase CA5/6 - yeast (Saccharomyces cerevisiae) >gi|1353268 (U28135) Dbp5p [Saccharomyces cerevisiae] >gi|1420175|emb|CAA99237| (Z74954) ORF YOR046c [Saccharomyces cerevisiae] Length = 482 Score = 257 bits (650), Expect = 9e-68 Identities = 141/379 (37%), Positives = 236/379 (62%), Gaps = 16/379 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83 + + L +LL+GIY+ F+ PS IQ RA+ ++ +++IAQ+QSGTGKTA F++ +L Sbjct: 95 DELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLT 154 Query: 84 AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143 ++ QA+ L+P+RELA Q +VV+ +G + + + I + D +K ++ Sbjct: 155 RVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI-----VPDSFEKNKQINA 209 Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVV 203 Q + GTPG VLD+++++++Q + +++ VLDEAD +L + G Q + LPK+ Q+V Sbjct: 210 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ-GLGDQCIRVKRFLPKDTQLV 268 Query: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263 + SAT + + +K + + + ++ +E++++ IKQ ++ E KFD L ++Y + Sbjct: 269 LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM 328 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 TI +IF TKK + L +L V +HGD++ +ERD++++DFR G S+VLI+T+ Sbjct: 329 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 388 Query: 324 VWARGIDVQQVSLVINYDLPEIIE------NYIHRIGRSGRFGRKGVAINFI-TKADLAK 376 V ARGID+ VS+V+NYDLP + YIHRIGR+GRFGRKGVAI+F+ K Sbjct: 389 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNI 448 Query: 377 LREIEKFY-SIKINPMPAN 394 L I+K++ I++ +P + Sbjct: 449 LSAIQKYFGDIEMTRVPTD 467 >gi|1881268|dbj||AB001488_42 (AB001488) ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG. [Bacillus subtilis] >gi|2632758|emb|CAB12265| (Z99106) similar to ATP-dependent RNA helicase [Bacillus subtilis] Length = 511 Score = 257 bits (650), Expect = 9e-68 Identities = 137/366 (37%), Positives = 224/366 (60%), Gaps = 4/366 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + NL DL++ I GFE + IQ++ I +S KDVI QAQ+GTGKTA F I L++ I Sbjct: 23 QDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI 82 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + ++QA++++PTRELA Q+ + + +G I GG+ + ++ ++K+ Sbjct: 83 NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP-NI 141 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGR+LD I ++ ++ NV +V+DEADE+L+ +GF I I + +P Q ++ Sbjct: 142 IVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLN--MGFIDDIESILSNVPSEHQTLLF 199 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM I + +FM +P + VK E+++ I+Q+ + V +E KFDTL + D + Sbjct: 200 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEV-QERKKFDTLTRLLDIQSP 258 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 ++F TK++VD L++ L +A +HGD+ Q +R + F+ G VL++TDV Sbjct: 259 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 318 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385 ARG+D+ V+ V N+D+P+ E+Y+HRIGR+GR G+ G+A+ FIT + + LR IE+ Sbjct: 319 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTK 378 Query: 386 IKINPM 391 K++ M Sbjct: 379 RKMDRM 384 >gi|3776005|emb|CAA09205| (AJ010466) RNA helicase [Arabidopsis thaliana] Length = 451 Score = 257 bits (650), Expect = 9e-68 Identities = 144/367 (39%), Positives = 223/367 (60%), Gaps = 7/367 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ I+ Sbjct: 77 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 136 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGC-QAVS 147 + AL+L TRELA QI Y+ + GG +K K + K+ C V Sbjct: 137 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH-KDLLKNECPHIVV 195 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 GTPGRVL + +++ L +NV+ +LDE D++L E+L ++ + +IF P + QV++ SA Sbjct: 196 GTPGRVLALAREKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDKQVMMFSA 254 Query: 208 TMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266 T++K+I V +KFM DP++I V + +++L G+ Q+ + + + E K L D+ D+L Sbjct: 255 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDALDFN 313 Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326 Q VIF + + D L++ L+ +F + +H M QEER F+ GH R+L++TD+ Sbjct: 314 QVVIFVKSVSRADELNKLLVGCHFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 373 Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYS 385 RGID+++V++VINYD+P+ + Y+HR+GR+GRFG KG+AI F+ A D L ++++ + Sbjct: 374 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFE 433 Query: 386 IKINPMP 392 + I +P Sbjct: 434 VDIKELP 440 >gi|3132829 (AF063447) nuclear RNA helicase [Rattus norvegicus] Length = 427 Score = 256 bits (648), Expect = 1e-67 Identities = 138/366 (37%), Positives = 222/366 (59%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ I+ Sbjct: 51 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPIN 110 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + YM +V GG ++K D ++K+ V G Sbjct: 111 GQVSVLVMCHTRELAFQISTEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVG 170 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L +++ + L RNV+ VLDE D++L E L ++ + +IF P Q ++ SAT Sbjct: 171 TPGRILALVRSRSLNLRNVKHFVLDECDKML-EQLDMRRDVQEIFRLTPHEKQCMMFSAT 229 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++K+I V RKFM DP+++ V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 230 LSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKL-KDSEKNRKLFDLLDVLEFNQ 288 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF + ++ L+Q L++ NF +++H M QEER F+ R+L++T+++ R Sbjct: 289 VVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++V NYD+PE + Y+HR+ R+GRFG KG+A+ F++ + AK L +++ + + Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEV 408 Query: 387 KINPMP 392 + +P Sbjct: 409 NVAELP 414 >gi|2500529|sp|Q13838|HE47_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P47 >gi|2135840|pir||I37201 nuclear RNA helicase (DEAD family) BAT1 - human >gi|587146|emb|CAA85523| (Z37166) nuclear RNA helicase (DEAD family) [Homo sapiens] Length = 428 Score = 256 bits (647), Expect = 2e-67 Identities = 137/366 (37%), Positives = 224/366 (60%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ ++ Sbjct: 52 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + + YM NV GG ++K D + ++K+ V G Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + + L ++++ +LDE D++L E L ++ + +IF P QV++ SAT Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++K+I V RKFM DP++I V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF + ++ L+Q L++ NF +++H M QEER F+ R+L++T+++ R Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++ NYD+PE + Y+HR+ R+GRFG KG+AI F++ + AK L +++ + + Sbjct: 350 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 409 Query: 387 KINPMP 392 I+ +P Sbjct: 410 NISELP 415 >gi|4235116 (AF118128) nuclear RNA helicase Bat1 [Mus musculus] Length = 428 Score = 256 bits (647), Expect = 2e-67 Identities = 137/366 (37%), Positives = 224/366 (60%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ ++ Sbjct: 52 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + + YM NV GG ++K D + ++K+ V G Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + + L ++++ +LDE D++L E L ++ + +IF P QV++ SAT Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++K+I V RKFM DP++I V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF + ++ L+Q L++ NF +++H M QEER F+ R+L++T+++ R Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++ NYD+PE + Y+HR+ R+GRFG KG+AI F++ + AK L +++ + + Sbjct: 350 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 409 Query: 387 KINPMP 392 I+ +P Sbjct: 410 NISELP 415 >gi|1001719|gnl|PID|d1011207 (D64004) ATP-dependent RNA helicase DeaD [Synechocystis sp.] Length = 492 Score = 254 bits (643), Expect = 6e-67 Identities = 135/340 (39%), Positives = 215/340 (62%), Gaps = 4/340 (1%) Query: 42 GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTR 101 GFEAP+ IQ+ AI ++SG+D++AQ+Q+GTGKTA F + L+ ID + DLQALIL+PTR Sbjct: 26 GFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDRID-PEGDLQALILTPTR 84 Query: 102 ELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQM 161 ELA Q+ + +K+ + + GG++++ ++ +++ G Q V GTPGRV+D+I ++ Sbjct: 85 ELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER-GVQIVVGTPGRVIDLIDRKK 143 Query: 162 LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFM 221 L+ +Q +VLDEADE+LS +GF + I K P Q SATM ++I E+ +F+ Sbjct: 144 LKLETIQWVVLDEADEMLS--MGFIDDVKTILRKTPPTRQTACFSATMPREIKELVNQFL 201 Query: 222 NDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281 NDP + VK+ + + I+Q + +V + K L I + +IF TK+ L Sbjct: 202 NDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFVRTKQTAADL 261 Query: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341 + RL ++ +V HG++ Q +R+++++ FR G +++++TD+ ARG+DV +S V+N+D Sbjct: 262 TSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVNNLSHVVNFD 321 Query: 342 LPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381 LP+ E YIHRIGR+GR G+ G AI + D LR IE Sbjct: 322 LPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIE 361 >gi|3047117 (AF058919) similar to ATP-dependent RNA helicases [Arabidopsis thaliana] Length = 499 Score = 254 bits (642), Expect = 8e-67 Identities = 138/368 (37%), Positives = 225/368 (60%), Gaps = 13/368 (3%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK +LL GIY GFE PS IQ +I ++G+D++A+A++GTGKTA F I +L+ I Sbjct: 134 EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193 Query: 86 DLRKKDLQA-LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144 D +Q +L T QV K LG ++ + TGG +LKDD+ ++ + Sbjct: 194 DQDNNVIQGNCVLDHT-------SQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQP-VH 245 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 + GTPGR+LD+ KK + ++ +LV+DEAD+LLS+ F+ + + + LP++ Q+++ Sbjct: 246 LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE--FQPSVEHLISFLPESRQILM 303 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + +F+ +P I + DE++L+GI Q+ V++ + K L ++ L Sbjct: 304 FSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSKLQ 361 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 I Q +IFCN+ +V+ L++++ + ++ +H M Q+ R++V +DFR G R L+ TD+ Sbjct: 362 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 421 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 + RGID+Q V++VIN+D P+ E Y+HR+GRSGRFG G+A+N IT D L IE+ Sbjct: 422 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 481 Query: 385 SIKINPMP 392 +I +P Sbjct: 482 GTEIKQIP 489 >gi|2500530|sp|Q29024|HE47_PIG PROBABLE ATP-DEPENDENT RNA HELICASE P47 >gi|2136589|pir||I47126 nuclear RNA helicase (DEAD family) BAT1 - pig >gi|509403|emb|CAA84355| (Z34846) BAT1 [Sus scrofa] Length = 427 Score = 253 bits (639), Expect = 2e-66 Identities = 135/366 (36%), Positives = 223/366 (60%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ ++ Sbjct: 51 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 110 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + + YM NV GG ++K D + ++K+ V G Sbjct: 111 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 170 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + + L ++++ +LDE D++L E L ++ + +IF P QV++ SAT Sbjct: 171 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 229 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++K++ V RKFM DP++I V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 230 LSKEVRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 288 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF + ++ L+Q L++ NF +++H M QEER F+ +L++T+++ R Sbjct: 289 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRGILVATNLFGR 348 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++ NYD+PE + Y+HR+ R+GRFG KG+AI F++ + AK L +++ + + Sbjct: 349 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 408 Query: 387 KINPMP 392 I+ +P Sbjct: 409 NISELP 414 >gi|1905998 (U90426) nuclear RNA helicase [Homo sapiens] Length = 427 Score = 252 bits (637), Expect = 3e-66 Identities = 137/366 (37%), Positives = 219/366 (59%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I G E PS +Q I Q I G DV+ QA+SG GKTA F + LQ I+ Sbjct: 51 LKPELLRAIVDCGLEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 110 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + + YM +V GG ++K D + M+K+ V G Sbjct: 111 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVMKKNCPHVVVG 170 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L +++ + +NV+ VLDE D++L E L ++ + +IF P Q ++ SAT Sbjct: 171 TPGRILALVRNRSFSLKNVKHFVLDECDKML-EQLDMRRDVQEIFRLTPHEKQCMMFSAT 229 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++KDI V RKFM DP+++ V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 230 LSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKL-KDSEKNRKLFDLLDVLEFNQ 288 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 +IF + ++ L+Q L++ NF +++H M QEER F+ R+L++T+++ R Sbjct: 289 VIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++V NYD+PE + Y+HR+ R GRFG KG+AI F++ + AK L ++ + Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARGGRFGTKGLAITFVSDENDAKILNHVQDRCEV 408 Query: 387 KINPMP 392 + +P Sbjct: 409 NVAELP 414 >gi|2500531|sp|Q63413|HE47_RAT PROBABLE ATP-DEPENDENT RNA HELICASE P47 Length = 428 Score = 252 bits (637), Expect = 3e-66 Identities = 136/366 (37%), Positives = 222/366 (60%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ ++ Sbjct: 52 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + + YM NV GG ++K D + ++K+ V G Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + + L ++++ +LDE D++L E L ++ + +IF P QV++ SAT Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++K+I V RKFM DP++I V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF + ++ L+Q L++ N +++H M QEER F+ R+L++T+++ R Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNLPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+ +V++ NYD+PE + Y+HR+ R+GRFG KG+AI F++ + AK L +++ + + Sbjct: 350 GMDIVRVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 409 Query: 387 KINPMP 392 I+ +P Sbjct: 410 NISELP 415 >gi|2500532|sp|Q27268|HE47_DROME PROBABLE ATP-DEPENDENT RNA HELICASE WM6 >gi|1079062|pir||S51601 DEAD-box RNA helicase WM6 - fruit fly (Drosophila melanogaster) >gi|158313 (L06018) DECD family putative RNA helicase [Drosophila melanogaster] >gi|505583|emb|CAA56197| (X79802) WM6 [Drosophila melanogaster] Length = 424 Score = 247 bits (625), Expect = 7e-65 Identities = 135/367 (36%), Positives = 220/367 (59%), Gaps = 6/367 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK ++LR I GFE PS +Q I Q + G D++ QA+SG GKTA F + LQ ++ Sbjct: 48 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSD 107 Query: 90 KDL-QALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 + L++ TRELA QI + + YM V GG ++ D + ++ V Sbjct: 108 NNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVV 167 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 GTPGR+L +I+ + L + ++ VLDE D++L E L ++ + +IF P QV++ SA Sbjct: 168 GTPGRILALIRNKKLNLKLLKHFVLDECDKML-EQLDMRRDVQEIFRSTPHGKQVMMFSA 226 Query: 208 TMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266 T++KDI V +KFM DP+++ V + +++L G++Q+ VN+ KE K L ++ D L Sbjct: 227 TLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNL-KENEKNKKLFELLDVLEFN 285 Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326 Q VIF + ++ LSQ L + NF + +H M QEER F+ R+L++T+++ Sbjct: 286 QVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFG 345 Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYS 385 RG+D+++V++V NYD+PE + Y+HR+ R+GRFG KG+AI F++ + AK L E++ + Sbjct: 346 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFD 405 Query: 386 IKINPMP 392 + I+ +P Sbjct: 406 VNISELP 412 >gi|1706338|sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG >gi|1480333|emb|CAB00899| (Z77137) deaD [Mycobacterium tuberculosis] Length = 563 Score = 247 bits (623), Expect = 1e-64 Identities = 132/350 (37%), Positives = 212/350 (59%), Gaps = 7/350 (2%) Query: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93 +LR I G+E+P++IQ+ I +++G DV+ AQ+GTGKTA F I +L ID+ K Q Sbjct: 24 VLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQ 83 Query: 94 ALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGR 152 AL+L PTRELA Q+ + G Y++ +N I GG + L +++ G Q V GTPGR Sbjct: 84 ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR-GAQVVVGTPGR 142 Query: 153 VLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKD 212 ++D +++ L V LVLDEADE+L T+GF + I ++ P+ QV + SATM Sbjct: 143 MIDHLERATLDLSRVDFLVLDEADEML--TMGFADDVERILSETPEYKQVALFSATMPPA 200 Query: 213 ILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFC 272 I +++ K+++DP ++ K E I Q + V + K D L + + ++F Sbjct: 201 IRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR---KMDALTRVLEVEPFEAMIVFV 257 Query: 273 NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQ 332 TK+ + ++++L F+ ++ GD+ Q +R++ + R G +L++TDV ARG+DV+ Sbjct: 258 RTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVE 317 Query: 333 QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 ++S V+NYD+P E+Y+HRIGR+GR GR G A+ F++ +L L+ IEK Sbjct: 318 RISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEK 367 >gi|548730|sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE >gi|560801 (L02123) ATP-dependent RNA helicase [Escherichia coli] >gi|1651360|gnl|PID|d1036449 (D90717) Putative ATP-dependent RNA helicase RhlE. [Escherichia coli] >gi|1787016 (AE000182) putative ATP-dependent RNA helicase [Escherichia coli] >gi|4062355|gnl|PID|d1036443 (D90716) Putative ATP-dependent RNA helicase RhlE. [Escherichia coli] Length = 454 Score = 245 bits (618), Expect = 5e-64 Identities = 131/369 (35%), Positives = 225/369 (60%), Gaps = 10/369 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 +S+ L D+LR + G+ P+ IQ +AI ++ G+D++A AQ+GTGKTA FT+ LLQ + Sbjct: 4 DSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63 Query: 86 DLR------KKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQ 139 R ++ ++ALIL+PTRELA+QIG+ V++ Y+N+ + + GG ++ + K+ Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL- 122 Query: 140 KHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKN 199 + G + TPGR+LD+ + ++ V++LVLDEAD +L +GF I + KLP Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD--MGFIHDIRRVLTKLPAK 180 Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259 Q ++ SAT + DI + K +++P++I V R + + + Q+V VDK+ K + L + Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKR-KRELLSHM 239 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 Q ++F TK + L+++L + ++HG+ Q R + + DF++G RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379 ++TD+ ARG+D++++ V+NY+LP + E+Y+HRIGR+GR G A++ + + LR+ Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 380 IEKFYSIKI 388 IEK +I Sbjct: 360 IEKLLKKEI 368 >gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus fulgidus] Length = 368 Score = 245 bits (618), Expect = 5e-64 Identities = 131/363 (36%), Positives = 224/363 (61%), Gaps = 7/363 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG-KDVIAQAQSGTGKTATFTIGLLQA 84 E + + ++ L + GFE P+ IQ I + G KD++ QAQ+G+GKTA F + +L Sbjct: 10 EDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILDL 69 Query: 85 IDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144 +D R KD+QA++++PTRELA Q+ +++L V+ A+ GG+ + +++++K G Q Sbjct: 70 VDERSKDVQAIVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERLRK-GVQ 128 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 V GTPGRV+D ++++ L V+ VLDEAD +L +GF I I +V++ Sbjct: 129 IVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLD--MGFIDDIERILRHAGAERRVLM 186 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SATM ++L + R++M D +++ +I+ E ++ + V+ E+ +F+ LC I D Sbjct: 187 FSATMPPEVLRLARRYMRD-YEVVRVHSKITPENVEHRCLKVNPEK-RFEHLCRILDENN 244 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 ++FC TKK+ L +RL + +++GD+ Q +R+ ++ +FR G++RVL++TDV Sbjct: 245 FYG-IVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLVATDV 303 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384 ARGIDV+ ++ V+NY +P+ E YIHR GR+GR G++G AI F+ + KL+ IE+ Sbjct: 304 AARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKLKIIERTA 363 Query: 385 SIK 387 ++ Sbjct: 364 KVR 366 >gi|2313340 (AE000544) ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter pylori 26695] Length = 492 Score = 244 bits (617), Expect = 6e-64 Identities = 132/357 (36%), Positives = 215/357 (59%), Gaps = 9/357 (2%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + LK+ +L+ +Y GF +PS IQ +AI ++ G+DVIAQAQ+GTGKTA F + ++ + Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLK- 83 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 ++AL+++PTRELA QI + LG + + GG+++K + ++K+ Q + Sbjct: 84 NNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNP-QVMI 142 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 TPGR+LD +K + + +++VLDE+DE+L +GF I +IF LP Q+++ SA Sbjct: 143 ATPGRLLDHLKNERIHKFVPKVVVLDESDEMLD--MGFLDDIEEIFDYLPSEAQILLFSA 200 Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ--YVVNVDKEEWKFDTLCDIYDSLTI 265 TM + I + K + +P+KI + I+ I Q YV+N E + + + + D+ Sbjct: 201 TMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN---EHERAEAIMRLLDTQAP 257 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 + ++F TKK+ D L Q L N+ ++HGDM Q +R + F+ + VL++TDV Sbjct: 258 KKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVA 317 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 +RG+D+ VS V NY LP E+YIHRIGR+GR G+KG+AI +T + +L ++K Sbjct: 318 SRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 >gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase [Plasmodium falciparum] Length = 457 Score = 242 bits (611), Expect = 3e-63 Identities = 136/387 (35%), Positives = 226/387 (58%), Gaps = 26/387 (6%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I I+G D++ QA+SG GKTA F + +LQ +D + Sbjct: 62 LKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLDTNE 121 Query: 90 --------------------KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGG 128 K ++ L L+ TRELA QI Y+ NV + GG Sbjct: 122 NQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGG 181 Query: 129 KTLKDDLKKMQKHGC-QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ 187 ++ +K ++ + GTPGR+L +I+++ L T +Q VLDE D+ L E L + Sbjct: 182 ISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLITDKIQHFVLDECDKCL-EKLDMRS 240 Query: 188 QIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNV 246 + IF P QV+ SATM K++ +V +KF+ +PV+I + + ++ L G+ Q+ V + Sbjct: 241 DVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKL 300 Query: 247 DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDK 306 +++ K L +I D+L Q +IF + + L + L + NF +++HG ++Q+ER + Sbjct: 301 QEKD-KTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQQERIE 359 Query: 307 VMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAI 366 + F+ +R+L+STD++ RGID+++V++VINYD+PE ++Y+HR+GR+GRFG KG+A+ Sbjct: 360 RYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAV 419 Query: 367 NFI-TKADLAKLREIEKFYSIKINPMP 392 F+ ++ D L E++ + + I+ MP Sbjct: 420 TFVSSQEDTLALNEVQTRFEVAISEMP 446 >gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99] Length = 491 Score = 242 bits (611), Expect = 3e-63 Identities = 131/357 (36%), Positives = 215/357 (59%), Gaps = 9/357 (2%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + LK+ +L+ +Y GF +PS IQ +AI ++ G+DVIAQAQ+GTGKTA F + ++ + Sbjct: 25 LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLK- 83 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 ++AL+++PTRELA QI + LG + + GG+++K + ++K+ Q + Sbjct: 84 NNHTIKALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNP-QVMI 142 Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207 TPGR+LD +K + + +++VLDE+DE+L +GF I +IF LP Q+++ SA Sbjct: 143 ATPGRLLDHLKNERIHKFVPKVVVLDESDEMLD--MGFLDDIEEIFDYLPSEAQILLFSA 200 Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ--YVVNVDKEEWKFDTLCDIYDSLTI 265 TM + I + K + +P+KI + I+ I Q YV+N E + + + + D+ Sbjct: 201 TMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN---EHERAEAIMRLLDTQAP 257 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 + ++F TKK+ D L Q L N+ ++HGDM Q +R + F+ + VL++TDV Sbjct: 258 EKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVA 317 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 +RG+D+ VS V +Y LP E+YIHRIGR+GR G+KG+AI +T + +L ++K Sbjct: 318 SRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 >gi|2408027|emb|CAB16225| (Z99162) atp-dependent rna helicase [Schizosaccharomyces pombe] Length = 434 Score = 241 bits (609), Expect = 6e-63 Identities = 136/368 (36%), Positives = 224/368 (59%), Gaps = 7/368 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ I+ Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLK--KMQKHGCQAV 146 ++ L+L TRELA QI Y+ +V GG +K D++ K + V Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 TPGR+ ++++++L+ +V+ VLDE D+LL E++ ++ I ++F P QV++ S Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLL-ESVDMRRDIQEVFRATPPQKQVMMFS 236 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 AT++ +I + +KFM +P++I V + +++L G++Q+ V ++ E+ K + D+ DSL Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEF 295 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q VIF + + + L + L + NF + +HG + QEER K F+ R+ ++TDV+ Sbjct: 296 NQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVF 355 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINF-ITKADLAKLREIEKFY 384 RGID+++V++VINYD+P+ ++Y+HR+GR+GRFG KG+AI F ++ D L +I++ + Sbjct: 356 GRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERF 415 Query: 385 SIKINPMP 392 + I +P Sbjct: 416 EVNITELP 423 >gi|2500540|sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669 >gi|2127878|pir||E64383 eIF-4A family probable ATP-dependent RNA helicase homolog - Methanococcus jannaschii >gi|1591383 (U67514) ATP-dependent RNA helicase, DEAD-family (deaD) [Methanococcus jannaschii] Length = 367 Score = 240 bits (606), Expect = 1e-62 Identities = 136/365 (37%), Positives = 224/365 (61%), Gaps = 12/365 (3%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGK-DVIAQAQSGTGKTATFTIGLLQAID 86 +NL D++L I + GFE P+ IQ + I ++ + +++AQA++G+GKTA+F I L++ ++ Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN 70 Query: 87 LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAV 146 ++A+IL+PTRELA Q+ +++L N+ I GGK + +K ++ V Sbjct: 71 -ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN--ANIV 127 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 GTPGR+LD I + L +NV+ +LDEADE+L+ +GF + + I K+ ++++ S Sbjct: 128 VGTPGRILDHINRGTLNLKNVKYFILDEADEMLN--MGFIKDVEKILNACNKDKRILLFS 185 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266 ATM ++IL + +K+M D I K + I+Q V V++ E +F+ LC + + Sbjct: 186 ATMPREILNLAKKYMGDYSFIKAKINA----NIEQSYVEVNENE-RFEALCRLLKNKEFY 240 Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326 ++FC TK+ L+ L F ++HGD+ Q +R+KV+ F+ R+LI+TDV + Sbjct: 241 G-LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS 299 Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSI 386 RGIDV ++ VINY LP+ E+Y+HRIGR+GR G+KG AI+ I + + KLR IE+ + Sbjct: 300 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 Query: 387 KINPM 391 KI + Sbjct: 360 KIKKL 364 >gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family [Methanobacterium thermoautotrophicum] Length = 425 Score = 240 bits (606), Expect = 1e-62 Identities = 133/367 (36%), Positives = 221/367 (59%), Gaps = 9/367 (2%) Query: 29 NLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLR 88 ++ D+ R + GFE+ + IQ+ + + G DV+ +AQ+GTGKTA F I +L+ ++ Sbjct: 10 DISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLENLEAE 69 Query: 89 KKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + QALI+ PTREL Q+ + +K +G YM V A+ GG+++ + + ++++ G + Sbjct: 70 RVP-QALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRR-GVHVIVA 127 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR++D I++ + + +VLDEADE+L+ +GF I I + +P+ Q ++ SAT Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEMLN--MGFIDDIERILSHVPERRQTMLFSAT 185 Query: 209 MNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQC 268 ++K IL + RK+M +P + V++ I ++ +EE K + L I S I Sbjct: 186 VSKPILRIARKYMRNPQVMRVEKKHSPK--IDEFYFKT-REEDKVELLDWILSSNNIRMG 242 Query: 269 VIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARG 328 +IFCNTK++V L ++L + ++ +HGD+ Q +R++VM FR G +L++TDV ARG Sbjct: 243 LIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARG 302 Query: 329 IDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS--I 386 I V V V+NYDLP E Y+HRIGR+GR G G + + +++ +LR I+ F I Sbjct: 303 IHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKRI 362 Query: 387 KINPMPA 393 K + MP+ Sbjct: 363 KQSNMPS 369 >gi|539961|pir||A42811 translation initiation factor eIF-4A homolog - rat >gi|205942 (M75168) liver nuclear protein p47 [Rattus norvegicus] Length = 399 Score = 240 bits (605), Expect = 2e-62 Identities = 129/338 (38%), Positives = 205/338 (60%), Gaps = 4/338 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +LLR I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ ++ Sbjct: 52 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 + L++ TRELA QI + + YM NV GG ++K D + ++K+ V G Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + + L ++++ +LDE D++L E L ++ + +IF P QV++ SAT Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 ++K+I V RKFM DP++I V + +++L G++QY V + K+ K L D+ D L Q Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF + ++ L+Q L++ N +++H M QEER F+ R+L++T+++ R Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNLPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA 365 G+D+ +V++ NYD+PE + Y+HR+ R+GRFG KG+A Sbjct: 350 GMDIVRVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 >gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG >gi|2131326|pir||S67620 hypothetical protein YDL084w - yeast (Saccharomyces cerevisiae) >gi|1431108|emb|CAA98650| (Z74132) ORF YDL084w [Saccharomyces cerevisiae] Length = 446 Score = 239 bits (604), Expect = 2e-62 Identities = 132/368 (35%), Positives = 218/368 (58%), Gaps = 7/368 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK +L R I GFE PS +Q I Q I G DV+ QA+SG GKTA F + LQ +D Sbjct: 69 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 128 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDD--LKKMQKHGCQAV 146 ++ +++ RELA QI YM +V GG + D L K + V Sbjct: 129 GEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 TPGR+ +++++ + +V+ V+DE D++L E L ++ + +IF P++ QV++ S Sbjct: 189 VATPGRLKALVREKYIDLSHVKNFVIDECDKVLEE-LDMRRDVQEIFRATPRDKQVMMFS 247 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 AT++++I + R+F+ +P++I V + +++L G++QY + +++ E K L + D L Sbjct: 248 ATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEERE-KNRKLAQLLDDLEF 306 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 Q +IF + + + L++ L SNF +++HG MKQEER F+ R+ +STDV+ Sbjct: 307 NQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVF 366 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-TKADLAKLREIEKFY 384 RGID+++++L INYDL + Y+HR+GR+GRFG KG+AI+F+ +K D L +I++ + Sbjct: 367 GRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERF 426 Query: 385 SIKINPMP 392 +KI P Sbjct: 427 DVKIAEFP 434 >gi|2190968 (AF002677) DEAD-box RNA helicase [Dictyostelium discoideum] Length = 437 Score = 239 bits (603), Expect = 3e-62 Identities = 138/353 (39%), Positives = 216/353 (61%), Gaps = 16/353 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQII-SGKDVIAQAQSGTGKTATFTIGLLQA 84 E + LK +LL+G+Y+ G+ PS IQ + II S ++IAQ+QSGTGKTA FT+G+L Sbjct: 73 EELGLKPELLKGVYAMGYNKPSKIQEATLPIIIQSPNNLIAQSQSGTGKTAAFTLGMLNC 132 Query: 85 IDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144 +D QA+ +SPT+ELA Q +V+ +G + N+ +++ + Q Sbjct: 133 VDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYI------SEIEVPKNVTNQ 186 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 + GTPG++L+ + K+ L + ++M+VLDEAD + + QI I LP N +V + Sbjct: 187 VIIGTPGKILENVIKKQLSVKFLKMVVLDEAD-FIVKMKNVPNQIAMINRLLPSNVKVCL 245 Query: 205 VSATMNKDILEVTRKFMNDP-VKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263 SAT + + E+ +K + DP I +KR E+S+E I QY ++ E+ K L DIY + Sbjct: 246 FSATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYGFI 305 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHG-DMKQEERDKVMNDFRTGHSRVLIST 322 ++ Q ++F +T + Q+++ +V ++G D+ EER K + DF+ G S+VLI+T Sbjct: 306 SVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITT 365 Query: 323 DVWARGIDVQQVSLVINYDLP--EIIE----NYIHRIGRSGRFGRKGVAINFI 369 +V ARGID+ QVSLVINYD+P E+ + +Y+HRIGR GRFGR GVA++F+ Sbjct: 366 NVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFV 418 >gi|1169261|sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG >gi|1073892|pir||F64056 ATP-dependent RNA helicase (deaD) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1573195 (U32709) ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd] Length = 613 Score = 238 bits (601), Expect = 5e-62 Identities = 135/366 (36%), Positives = 210/366 (56%), Gaps = 11/366 (3%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + L + +L+ + GFE PS IQ I +++G DV+ AQ+G+GKTA F + LL ID Sbjct: 10 LGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDP 69 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDY-MNVNAFAITGGKTLKDDLKKMQKHGCQAV 146 +K Q L+++PTRELA Q+ + Y + GG+ L+ + K G Q V Sbjct: 70 SEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL-KQGAQVV 128 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 GTPGR+LD I++ L ++ +VLDEADE+L +GF + + A+LP+N Q + S Sbjct: 129 VGTPGRILDHIRRGTLNLSELRFIVLDEADEML--RMGFIDDVETVMAELPENHQTALFS 186 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ---YVVNVDKEEWKFDTLCDIYDSL 263 ATM + I +T++FMNDP ++ +K + + I Q YV V K E L + Sbjct: 187 ATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNE----ALLRFLEVE 242 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 +IF TK +++ L ++ F +++GDM Q+ R++ ++ R G ++++TD Sbjct: 243 DFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383 V ARGID++++SLV+NYD+P E+Y+HRIGR+GR GR G A+ F+ + LR IE Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHL 362 Query: 384 YSIKIN 389 IN Sbjct: 363 MKKGIN 368 >gi|96321|pir||A42357 probable ATP-dependent RNA helicase deaD - Escherichia coli >gi|145727 (M63288) deaD [Escherichia coli] Length = 571 Score = 237 bits (599), Expect = 8e-62 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 11/375 (2%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + LK +L + G+E PS IQ+ I +++G+DV+ AQ+G+GKTA F++ LLQ +D Sbjct: 28 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP 87 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146 K Q L+L+PTRELA Q+ + + + +M VN A+ GG+ L+ +++ G Q V Sbjct: 88 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 146 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 GTPGR+LD +K+ L + LVLDEADE+L +GF + + I A++P+ Q + S Sbjct: 147 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 204 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW---KFDTLCDIYDSL 263 ATM + I +TR+FM +P ++ ++ + I Q V W K + L ++ Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----WGMRKNEALVRFLEAE 260 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 +IF TK +++ L ++ + +++GDM Q R++ + + G +LI+TD Sbjct: 261 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 320 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383 V ARG+DV+++SLV+NYD+P E+Y+HRIGR+GR GR G A+ F+ + LR IE+ Sbjct: 321 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 380 Query: 384 YSIKINPMPANFAEL 398 + I + AEL Sbjct: 381 MKLTIPEVELPNAEL 395 >gi|461923|sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD Length = 646 Score = 237 bits (599), Expect = 8e-62 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 11/375 (2%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + LK +L + G+E PS IQ+ I +++G+DV+ AQ+G+GKTA F++ LLQ +D Sbjct: 28 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP 87 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146 K Q L+L+PTRELA Q+ + + + +M VN A+ GG+ L+ +++ G Q V Sbjct: 88 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 146 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 GTPGR+LD +K+ L + LVLDEADE+L +GF + + I A++P+ Q + S Sbjct: 147 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 204 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW---KFDTLCDIYDSL 263 ATM + I +TR+FM +P ++ ++ + I Q V W K + L ++ Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----WGMRKNEALVRFLEAE 260 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 +IF TK +++ L ++ + +++GDM Q R++ + + G +LI+TD Sbjct: 261 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 320 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383 V ARG+DV+++SLV+NYD+P E+Y+HRIGR+GR GR G A+ F+ + LR IE+ Sbjct: 321 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 380 Query: 384 YSIKINPMPANFAEL 398 + I + AEL Sbjct: 381 MKLTIPEVELPNAEL 395 >gi|606102 (U18997) two frameshifts relative to ECODEAD [Escherichia coli] >gi|1789553 (AE000397) inducible ATP-independent RNA helicase [Escherichia coli] Length = 646 Score = 237 bits (599), Expect = 8e-62 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 11/375 (2%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + LK +L + G+E PS IQ+ I +++G+DV+ AQ+G+GKTA F++ LLQ +D Sbjct: 28 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP 87 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146 K Q L+L+PTRELA Q+ + + + +M VN A+ GG+ L+ +++ G Q V Sbjct: 88 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 146 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 GTPGR+LD +K+ L + LVLDEADE+L +GF + + I A++P+ Q + S Sbjct: 147 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 204 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW---KFDTLCDIYDSL 263 ATM + I +TR+FM +P ++ ++ + I Q V W K + L ++ Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----WGMRKNEALVRFLEAE 260 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 +IF TK +++ L ++ + +++GDM Q R++ + + G +LI+TD Sbjct: 261 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 320 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383 V ARG+DV+++SLV+NYD+P E+Y+HRIGR+GR GR G A+ F+ + LR IE+ Sbjct: 321 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 380 Query: 384 YSIKINPMPANFAEL 398 + I + AEL Sbjct: 381 MKLTIPEVELPNAEL 395 >gi|2500533|sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG >gi|3874509|emb|CAA91120| (Z54327) similar to translation initiation factor eIF-4A; cDNA EST EMBL:Z14797 comes from this gene; cDNA EST EMBL:T01553 comes from this gene; cDNA EST EMBL:T00043 comes from this gene; cDNA EST CEESF23F comes from this gene; ... Length = 425 Score = 236 bits (597), Expect = 1e-61 Identities = 130/366 (35%), Positives = 215/366 (58%), Gaps = 5/366 (1%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK ++LR I GFE PS +Q I Q I G DV+ QA+SG GKTA F I LQ ++ Sbjct: 48 LKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 107 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 ++ + + TRELA QI + + Y+ V GG +K D +++ V G Sbjct: 108 GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVG 167 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + L+ V+ VLDE D+++ + ++ + +I P+ QV++ SAT Sbjct: 168 TPGRMLALARSGKLKLDKVKYFVLDECDKMIGDA-DMRRDVQEIVKMTPQQKQVMMFSAT 226 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 + K++ V ++FM DP+++ V + +++L G++Q+ V + KE K L ++ D+L Q Sbjct: 227 LPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL-KEAEKNRRLLNLLDALEFNQ 285 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF K+ + L Q L + NF +++H M QEER F+ R+L++TD++ R Sbjct: 286 VVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGR 345 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++V NYD+PE ++Y+HR+ R+GRFG KG+AI F++ + AK L ++ + I Sbjct: 346 GMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDI 405 Query: 387 KINPMP 392 I +P Sbjct: 406 SITELP 411 >gi|461924|sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD >gi|625758|pir||JX0314 DEAD box protein - Klebsiella pneumoniae >gi|149184 (L08387) RNA helicase [Klebsiella pneumoniae] Length = 659 Score = 232 bits (586), Expect = 3e-60 Identities = 133/372 (35%), Positives = 214/372 (56%), Gaps = 5/372 (1%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + LK +L + G+E PS IQ+ I ++ G+DV+ AQ+G+GKTA F++ LL ID Sbjct: 27 LGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDP 86 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146 + Q L+L+PTRELA Q+ + + +M VN A+ GG+ L+ +++ G Q V Sbjct: 87 ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 145 Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206 GTPGR+LD +K+ L + LVLDEADE+L +GF + + I A++P+ Q + S Sbjct: 146 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 203 Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266 ATM + I +TR+FM +P ++ ++ + I Q K + L ++ Sbjct: 204 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMR-KNEALVRFLEAEDFD 262 Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326 +IF TK +++ L ++ + +++GDM Q R++ + + G +LI+TDV A Sbjct: 263 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAA 322 Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSI 386 RG+DV+++SLV+NYD+P E+Y+HRIGR+GR GR G A+ F+ + LR IE+ + Sbjct: 323 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 382 Query: 387 KINPMPANFAEL 398 I + AEL Sbjct: 383 TIPEVELPNAEL 394 >gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans] Length = 417 Score = 228 bits (576), Expect = 4e-59 Identities = 129/366 (35%), Positives = 212/366 (57%), Gaps = 12/366 (3%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89 LK ++LR I GFE PS +Q I Q I G DV+ QA+SG GKTA F I LQ ++ Sbjct: 47 LKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 106 Query: 90 KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148 ++ + + TRELA QI + + Y+ V GG +K D +++ V G Sbjct: 107 GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVG 166 Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208 TPGR+L + + L+ V+ VLDE D+++ + D+ + + QV++ SAT Sbjct: 167 TPGRMLALARSGKLKLDKVKYFVLDECDKMIGDA--------DMRRDVQEIKQVMMFSAT 218 Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267 + K++ V ++FM DP+++ V + +++L G++Q+ V + KE K L ++ D+L Q Sbjct: 219 LPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL-KEAEKNRRLLNLLDALEFNQ 277 Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327 VIF K+ + L Q L + NF +++H M QEER F+ R+L++TD++ R Sbjct: 278 VVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGR 337 Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386 G+D+++V++V NYD+PE ++Y+HR+ R+GRFG KG+AI F++ + AK L ++ + I Sbjct: 338 GMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDI 397 Query: 387 KINPMP 392 I +P Sbjct: 398 SITELP 403 >gi|3861207|emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia prowazekii] Length = 407 Score = 227 bits (573), Expect = 9e-59 Identities = 124/357 (34%), Positives = 218/357 (60%), Gaps = 7/357 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ++ NL +L+ + + P+ IQ ++I +SG D++A +Q+G+GKT + + L+ A Sbjct: 2 KNFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAF 61 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 K ALIL PTRELA+QI + + +N+ + GG+ + +++K+ + Sbjct: 62 I--KNKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKKNP-KV 118 Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205 + GTPGR+++ + ++ L+ ++ ++VLDE D +L +G K+Q+ +I LP+ QV++ Sbjct: 119 IIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLD--MGMKEQLEEINKFLPEKRQVLMF 176 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 SATM K I+ V++K++N+PV+I+V + IKQ +++V +E KF L + + Sbjct: 177 SATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKE-KFSELTKQLGN-RV 234 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 +IF TK+ D L++ L N ++HGD+ Q +R++V+ FR + R++++TDV Sbjct: 235 GSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVATDVA 294 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 ARG+D+ VINYDLP E+Y+HRIGR+GR G G A++FI+ D+ + R I++ Sbjct: 295 ARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDR 351 >gi|3879543|emb|CAA90406| (Z50071) similar to ATP-dependent helicase; cDNA EST EMBL:D73826 comes from this gene [Caenorhabditis elegans] Length = 638 Score = 224 bits (564), Expect = 1e-57 Identities = 142/398 (35%), Positives = 223/398 (55%), Gaps = 31/398 (7%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAI 85 + LK ++L+ + + F+ P+ IQ A+ ++ ++IAQAQSGTGKTA F + +L I Sbjct: 239 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 298 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNA-FAITGGKTLKDDLKKMQKHGC 143 D+ Q + L+PT ELA QIG+VV+ +G ++ N+ +AI GG +K+ + Sbjct: 299 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--- 355 Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQ---QIYDIFAKLPKN 199 Q V GTPG D ++K + + ++ LVLDEAD ++ GF IY++ + Sbjct: 356 QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVEDASDS 414 Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259 Q ++ SAT ++ ++ K + + + +++KR+E +L IKQ+ V + K+ + ++ Sbjct: 415 VQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNL 474 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 Y L + VIFC+TK V WL + + V +HGDM ER + F+ G +VL Sbjct: 475 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 534 Query: 320 ISTDVWARGIDVQQVSLVINYDLP-----------------EIIENYIHRIGRSGRFGRK 362 I+T+V+ARGIDV QVS+VINYDLP E Y+HRIGR+GRFG+ Sbjct: 535 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 594 Query: 363 GVAINFITKAD-LAKLREIEKFYSIKINPM-PANFAEL 398 G+AIN I D + + +E + +KI M P+N EL Sbjct: 595 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 632 >gi|3879544|emb|CAA90407| (Z50071) similar to ATP-dependent helicase (DEAD box); cDNA EST EMBL:D27789 comes from this gene; cDNA EST EMBL:D27790 comes from this gene [Caenorhabditis elegans] Length = 613 Score = 224 bits (564), Expect = 1e-57 Identities = 142/398 (35%), Positives = 223/398 (55%), Gaps = 31/398 (7%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAI 85 + LK ++L+ + + F+ P+ IQ A+ ++ ++IAQAQSGTGKTA F + +L I Sbjct: 214 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 273 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNA-FAITGGKTLKDDLKKMQKHGC 143 D+ Q + L+PT ELA QIG+VV+ +G ++ N+ +AI GG +K+ + Sbjct: 274 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--- 330 Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQ---QIYDIFAKLPKN 199 Q V GTPG D ++K + + ++ LVLDEAD ++ GF IY++ + Sbjct: 331 QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVEDASDS 389 Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259 Q ++ SAT ++ ++ K + + + +++KR+E +L IKQ+ V + K+ + ++ Sbjct: 390 VQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNL 449 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 Y L + VIFC+TK V WL + + V +HGDM ER + F+ G +VL Sbjct: 450 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 509 Query: 320 ISTDVWARGIDVQQVSLVINYDLP-----------------EIIENYIHRIGRSGRFGRK 362 I+T+V+ARGIDV QVS+VINYDLP E Y+HRIGR+GRFG+ Sbjct: 510 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 569 Query: 363 GVAINFITKAD-LAKLREIEKFYSIKINPM-PANFAEL 398 G+AIN I D + + +E + +KI M P+N EL Sbjct: 570 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 607 >gi|3879545|emb|CAA90408| (Z50071) similar to ATP-dependent helicase; cDNA EST EMBL:D37707 comes from this gene; cDNA EST EMBL:D35867 comes from this gene; cDNA EST EMBL:D37271 comes from this gene; cDNA EST EMBL:D70447 comes from this gene; cDNA EST EM... Length = 1022 Score = 224 bits (564), Expect = 1e-57 Identities = 142/398 (35%), Positives = 223/398 (55%), Gaps = 31/398 (7%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAI 85 + LK ++L+ + + F+ P+ IQ A+ ++ ++IAQAQSGTGKTA F + +L I Sbjct: 623 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 682 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNA-FAITGGKTLKDDLKKMQKHGC 143 D+ Q + L+PT ELA QIG+VV+ +G ++ N+ +AI GG +K+ + Sbjct: 683 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--- 739 Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQ---QIYDIFAKLPKN 199 Q V GTPG D ++K + + ++ LVLDEAD ++ GF IY++ + Sbjct: 740 QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVEDASDS 798 Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259 Q ++ SAT ++ ++ K + + + +++KR+E +L IKQ+ V + K+ + ++ Sbjct: 799 VQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNL 858 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 Y L + VIFC+TK V WL + + V +HGDM ER + F+ G +VL Sbjct: 859 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 918 Query: 320 ISTDVWARGIDVQQVSLVINYDLP-----------------EIIENYIHRIGRSGRFGRK 362 I+T+V+ARGIDV QVS+VINYDLP E Y+HRIGR+GRFG+ Sbjct: 919 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 978 Query: 363 GVAINFITKAD-LAKLREIEKFYSIKINPM-PANFAEL 398 G+AIN I D + + +E + +KI M P+N EL Sbjct: 979 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 1016 >gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema pallidum] Length = 649 Score = 215 bits (543), Expect = 3e-55 Identities = 118/358 (32%), Positives = 213/358 (58%), Gaps = 5/358 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGK-DVIAQAQSGTGKTATFTIGLLQA 84 E + L + L + GF P+ IQ+ AI ++++G ++IA+A++GTGKTA F + L+Q Sbjct: 49 EELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLIQE 108 Query: 85 IDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144 + + AL+L PTRELA+Q+ + +L + GG ++ + L+ +++ G + Sbjct: 109 LGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGG-E 167 Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 + GT GRV+D I++ L+ ++ +LDEADE+L+ +GF + I IF+ K+ +V++ Sbjct: 168 IIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN--MGFVEDIESIFSHANKDARVLM 225 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SATM + IL + FM + E + I+Q++ V ++ K + L + D Sbjct: 226 FSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV-RDADKIEALVRLIDVSD 284 Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324 ++FC TK D +++ L + ++ V ++HGD+ Q +R+K++ FRT +R+L++TDV Sbjct: 285 NFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDV 344 Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 ARGID++ ++ V+NY +P Y HR+GR+GR G +G+AI+F+ + ++ + K Sbjct: 345 AARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSK 402 >gi|4104820 (AF040045) DEAD box RNA helicase homolog [Anabaena variabilis] Length = 425 Score = 215 bits (541), Expect = 5e-55 Identities = 119/362 (32%), Positives = 211/362 (57%), Gaps = 11/362 (3%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ---A 84 + L ++++ + G+ P+ IQ ++I ++SG+D++ AQ+GTGKTA+FT+ LL Sbjct: 6 LGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLHYYPK 65 Query: 85 IDLRKKD----LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140 I L+ ++ALIL+PTRELA+Q+ V++ G Y+ +N+ + GG ++ +++ K Sbjct: 66 IVLKALQCFLTIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRL-K 124 Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 + TPGR+LD +++ + +++LVLDEAD +L +GF + I I + LPK Sbjct: 125 GRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLD--MGFIRDIRRILSLLPKQR 182 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260 Q ++ AT + I E+ +N P I V R ++ + + Q V ++++ K D L + Sbjct: 183 QNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDR-KRDLLAHLI 241 Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320 Q ++F TK D L ++L +++HG+ Q R + F+ G +VL+ Sbjct: 242 RKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLV 301 Query: 321 STDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREI 380 +TD+ ARG+D+ ++ V+N+DLP + E+Y+HRIGR+GR G G A++ ++ + L +I Sbjct: 302 ATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLADI 361 Query: 381 EK 382 EK Sbjct: 362 EK 363 >gi|3288677|gnl|PID|d1032186 (D89592) rhlE [Vibrio alginolyticus] Length = 411 Score = 213 bits (536), Expect = 2e-54 Identities = 123/358 (34%), Positives = 203/358 (56%), Gaps = 8/358 (2%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + L + + + G+E P+SIQ +AI ++ G ++IA AQ+GTGKTA+F + +L+ + Sbjct: 6 LGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQ 65 Query: 88 ----RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143 RKK +A+IL+PTRELA Q+ Q ++ G + + + A+ GG K+ G Sbjct: 66 GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQ-KQALIEGV 124 Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVV 203 V TPGR++D+ ++ + V+MLVLDEAD++L +GF I I +P++ Q + Sbjct: 125 DIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLD--MGFIDSIDKIIDCMPEDVQSL 182 Query: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263 + SAT++ + ++ + + DP +I + + S IKQ++ VDK+ K L + + Sbjct: 183 LFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKD-MKSSLLSHMLNEN 241 Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 +Q +IF TK L +L + + H Q R +++ F+ G + L++T Sbjct: 242 DWSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATG 301 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381 V ARGID+ + +VINYDLP + Y+HRIGR+GR G +G AI+ ++K D L IE Sbjct: 302 VAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIE 359 >gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana] Length = 733 Score = 210 bits (528), Expect = 2e-53 Identities = 127/396 (32%), Positives = 212/396 (53%), Gaps = 35/396 (8%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E L +LL+ + G++ PS IQ AI + +DVI A++G+GKTA F + +L I Sbjct: 316 EESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI 375 Query: 86 --------DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKK 137 + + A++++PTRELA QI + Y+ +I GG+++++ K Sbjct: 376 SRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLK 435 Query: 138 MQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197 + + GC+ V TPGR++D ++++ +VLDEAD ++ +GF+ Q+ + +P Sbjct: 436 ITQ-GCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID--MGFEPQVAGVLDAMP 492 Query: 198 KNC-----------------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240 + + SATM + + RK++ +PV + + + + I Sbjct: 493 SSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLIS 552 Query: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300 Q+V+ + KE KF L + D L ++F NTKK D +++ L ++ + V ++HG Sbjct: 553 QHVIMM-KESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 611 Query: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360 QE+R+ + FR VL++TDV RGID+ V+ VINYD+P+ IE Y HRIGR+GR G Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671 Query: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFA 396 + GVA +F+T L + E FY +K + +N A Sbjct: 672 KSGVATSFLT------LHDTEVFYDLKQMLVQSNSA 701 >gi|118283|sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||S14048 RNA helicase dbp2 - fission yeast (Schizosaccharomyces pombe) >gi|5270|emb|CAA36873| (X52648) p68 protein [Schizosaccharomyces pombe] Length = 550 Score = 208 bits (523), Expect = 7e-53 Identities = 127/368 (34%), Positives = 203/368 (54%), Gaps = 11/368 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E + +L+ + GFEAP+ IQ +A +SG+D++ + +G+GKT ++ + + I Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184 Query: 86 DLRK-----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140 + + L+L+PTRELA QI Q G + + GG L + + + Sbjct: 185 NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPLGPQILDLIR 244 Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 G + TPGR+LDM+ R V LVLDEAD +L +GF+ QI I ++ + Sbjct: 245 -GVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD--MGFEPQIRKIVDQIRPDR 301 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILV-KRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259 Q V+ SAT K++ + R ++ND +++ V D + IKQ V VD + + DI Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361 Query: 260 YDSLTI--TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317 + L + +IF TK+ D +++ L Q + +++HGD Q+ERD V+N+FRTG S Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421 Query: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377 ++++TDV +RGIDV+ ++ V NYD P E+Y+HRIGR+GR G KG A + T + + Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481 Query: 378 REIEKFYS 385 RE+ S Sbjct: 482 RELVSILS 489 >gi|133134|sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE P62 >gi|103357|pir||S11485 RNA helicase - fruit fly (Drosophila melanogaster) >gi|8444|emb|CAA37037| (X52846) RNA helicase [Drosophila melanogaster] Length = 575 Score = 207 bits (521), Expect = 1e-52 Identities = 136/386 (35%), Positives = 219/386 (56%), Gaps = 18/386 (4%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 ++L D +++ I G++AP++IQ++ +SG + + A++G+GKT + + + I+ Sbjct: 142 VHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHIN- 200 Query: 88 RKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 ++ LQ AL+L+PTRELA QI QV G V + GG ++ +Q+ Sbjct: 201 NQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQR- 259 Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201 GC+ V TPGR++D + + LVLDEAD +L +GF+ QI I +++ + Q Sbjct: 260 GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD--MGFEPQIRKIVSQIRPDRQ 317 Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNV----DKEEWKFDTLC 257 ++ SAT K++ ++ F+ + ++I + E+S + VV+V KEE L Sbjct: 318 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 377 Query: 258 DIYD-SLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316 DIYD S + + +IF TK++VD L + + ++HGD Q ERD V+ +FR+G S Sbjct: 378 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 437 Query: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK--ADL 374 +L++TDV ARG+DV + VIN+D P+ E+YIHRIGR+GR KG + F TK A Sbjct: 438 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 497 Query: 375 AK-LREIEKFYSIKINPMPANFAELS 399 AK L ++ + + +INP N A S Sbjct: 498 AKALVDVLREANQEINPALENLARNS 523 >gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe] >gi|3810840|emb|CAA21801| (AL032684) p68-like protein. [Schizosaccharomyces pombe] Length = 550 Score = 207 bits (521), Expect = 1e-52 Identities = 126/368 (34%), Positives = 203/368 (54%), Gaps = 11/368 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E + +L+ + GFEAP+ IQ +A +SG+D++ + +G+GKT ++ + + I Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184 Query: 86 DLRK-----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140 + + L+L+PTRELA QI Q G + + GG ++ + + Sbjct: 185 NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR 244 Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 G + TPGR+LDM+ R V LVLDEAD +L +GF+ QI I ++ + Sbjct: 245 -GVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD--MGFEPQIRKIVDQIRPDR 301 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILV-KRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259 Q V+ SAT K++ + R ++ND +++ V D + IKQ V VD + + DI Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361 Query: 260 YDSLTI--TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317 + L + +IF TK+ D +++ L Q + +++HGD Q+ERD V+N+FRTG S Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421 Query: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377 ++++TDV +RGIDV+ ++ V NYD P E+Y+HRIGR+GR G KG A + T + + Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481 Query: 378 REIEKFYS 385 RE+ S Sbjct: 482 RELVSILS 489 >gi|416881|sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA >gi|1742212|gnl|PID|d1015662 (D90773) ATP-dependent RNA helicase DbpA. [Escherichia coli] >gi|1787605 (AE000232) ATP-dependent RNA helicase [Escherichia coli] Length = 457 Score = 206 bits (519), Expect = 2e-52 Identities = 123/363 (33%), Positives = 198/363 (53%), Gaps = 8/363 (2%) Query: 35 LRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQA 94 L + G+ + +Q+ A+ I++GKDV QA++G+GKTA F +GLLQ ID QA Sbjct: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74 Query: 95 LILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRV 153 L+L PTRELA Q+ ++ L ++ N + GG+ +Q H + TPGR+ Sbjct: 75 LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHIIVATPGRL 133 Query: 154 LDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDI 213 LD ++K + + LV+DEAD +L +GF I D+ P + Q ++ SAT + I Sbjct: 134 LDHLQKGTVSLDALNTLVMDEADRMLD--MGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191 Query: 214 LEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCN 273 ++ + DP+ I + + +L I+Q + K L + + CV+FCN Sbjct: 192 AAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKG-KIPLLQRLLSLHQPSSCVVFCN 249 Query: 274 TKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQ 333 TKK + L + + +S+HGD++Q +RD+ + F G +RVL++TDV ARG+D++ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 334 VSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN--PM 391 + LV+N++L E ++HRIGR+ R G G+AI+F + + I IK+N Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTP 369 Query: 392 PAN 394 PAN Sbjct: 370 PAN 372 >gi|3149952|gnl|PID|d1029287 (AB010259) DRH1 [Arabidopsis thaliana] Length = 619 Score = 206 bits (519), Expect = 2e-52 Identities = 124/380 (32%), Positives = 208/380 (54%), Gaps = 10/380 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTI-GLLQA 84 E+ +LLR + S GF AP+ IQ+++ + G+D++A A++G+GKT + I G L Sbjct: 161 EATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220 Query: 85 IDLRKKDLQA---LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 +R L+LSPTRELA+QI + G ++ + GG L+ +++ Sbjct: 221 QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER- 279 Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201 G V TPGR+ D+++ + + R + LVLDEAD +L +GF+ QI I ++P Q Sbjct: 280 GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD--MGFEPQIRKIVKEIPTKRQ 337 Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKR-DE-ISLEGIKQYVVNVDKEEWKFDTLCDI 259 ++ +AT K + ++ + +P ++ + DE ++ + I Q++ V E + + Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQIL 397 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 ++ +IFC+TK+ D L++ L + F ++HGD Q ERD V+N FR+G + VL Sbjct: 398 RSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456 Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379 ++TDV ARG+DV+ + V+NYD P +E+Y+HRIGR+GR G G A F D + Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516 Query: 380 IEKFYSIKINPMPANFAELS 399 + K +P E++ Sbjct: 517 LIKILEGANQRVPPQIREMA 536 >gi|1749748|gnl|PID|d1014628 (D89270) similar to Saccharomyces cerevisiae eukaryotic initiation factor 4A (EIF-4), SWISS-PROT Accession Number P10081 [Schizosaccharomyces pombe] Length = 339 Score = 206 bits (518), Expect = 3e-52 Identities = 116/330 (35%), Positives = 200/330 (60%), Gaps = 7/330 (2%) Query: 68 QSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAIT 126 +SG GKTA F + LQ I+ ++ L+L TRELA QI Y+ +V Sbjct: 1 KSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFY 60 Query: 127 GGKTLKDDLK--KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLG 184 GG +K D++ K + V TPGR+ +++++ L+ +V+ VLDE D+LL E++ Sbjct: 61 GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKNLKVNSVKHFVLDECDKLL-ESVD 119 Query: 185 FKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYV 243 ++ I ++F P QV++ SAT++ +I + +KFM +P++I V + +++L G++Q+ Sbjct: 120 MRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHY 179 Query: 244 VNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEE 303 V ++ E+ K + D+ DSL Q VIF + + + L + L + NF + +HG + QEE Sbjct: 180 VKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEE 238 Query: 304 RDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363 R K F+ R+ ++TDV+ RGID+++V++VINYD+P+ ++Y+HR+GR+GRFG KG Sbjct: 239 RIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKG 298 Query: 364 VAINF-ITKADLAKLREIEKFYSIKINPMP 392 +AI F ++ D L +I++ + + I +P Sbjct: 299 LAITFSSSEEDSQILDKIQERFEVNITELP 328 >gi|1174440|sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB HOMOLOG >gi|1073894|pir||H64066 ATP-dependent RNA helicase (srmB) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1573394 (U32725) ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd] Length = 439 Score = 205 bits (515), Expect = 6e-52 Identities = 121/369 (32%), Positives = 200/369 (53%), Gaps = 20/369 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ-A 84 E +L +LL+ + G+ P++IQ AI + DV+ A +GTGKTA F + LQ Sbjct: 7 EQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHL 66 Query: 85 IDLRKKDL---QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 +D ++ + L+L+PTRELA Q+ + + L + ++N ITGG Q H Sbjct: 67 LDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAY-------QNH 119 Query: 142 GC------QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAK 195 G V TPGR+L IK++ R+V+ML+ DEAD +L +GF Q I A+ Sbjct: 120 GDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQ--MGFGQDAEKIAAE 177 Query: 196 LPKNCQVVVVSATMNKDIL-EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFD 254 Q ++ SAT+ ++L + + +NDPVK+ + + I Q+ + D E K Sbjct: 178 TRWRKQTLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIK 237 Query: 255 TLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTG 314 L ++ +T+ ++F ++ LS+ L + + G+M Q +R+ ++ ++G Sbjct: 238 LLARFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSG 297 Query: 315 HSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADL 374 VL++TDV ARGID+ VS V+N+DLP + Y+HRIGR+ R G+KG A++F+ D Sbjct: 298 IVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDY 357 Query: 375 AKLREIEKF 383 L +I+++ Sbjct: 358 KLLGKIKRY 366 >gi|95749|pir||S12698 probable RNA helicase - Escherichia coli >gi|41248|emb|CAA36872| (X52647) DEAD box protein (AA 1-432) [Escherichia coli] Length = 432 Score = 204 bits (513), Expect = 1e-51 Identities = 121/349 (34%), Positives = 193/349 (54%), Gaps = 8/349 (2%) Query: 49 IQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIG 108 +Q+ A+ I++GKDV QA++G+GKTA F +GLLQ ID QAL+L PTRELA Q+ Sbjct: 4 VQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVA 63 Query: 109 QVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNV 167 ++ L ++ N + GG+ +Q H + TPGR+LD ++K + + Sbjct: 64 GELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHIIVATPGRLLDHLQKGTVSLDAL 122 Query: 168 QMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKI 227 LV+DEAD +L +GF I D+ P + Q ++ SAT + I ++ + DP+ I Sbjct: 123 NTLVMDEADRMLD--MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAI 180 Query: 228 LVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQ 287 + + +L I+Q + K L + + CV+FCNTKK + L + Sbjct: 181 EIDSTD-ALPPIEQQFYETSSKG-KIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNE 238 Query: 288 SNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIE 347 + +S+HGD++Q +RD+ + F G +RVL++TDV ARG+D++ + LV+N++L E Sbjct: 239 VGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPE 298 Query: 348 NYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN--PMPAN 394 ++HRIGR+ R G G+AI+F + + I IK+N PAN Sbjct: 299 VHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN 347 >gi|1169228|sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 >gi|1084413|pir||S42639 helicase-like protein - Wood tobacco >gi|563986|gnl|PID|d1004279 (D16247) RNA helicase like protein DB10 [Nicotiana sylvestris] Length = 607 Score = 204 bits (513), Expect = 1e-51 Identities = 121/354 (34%), Positives = 203/354 (57%), Gaps = 10/354 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E+ +++R ++ GF AP+ IQ+++ + G+D++A A++G+GKT + + + Sbjct: 148 EATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIHL 207 Query: 86 DLRKKDLQA----LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 R+K+ Q L+LSPTRELA+QI G ++ + GG L+++ + Sbjct: 208 QQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSR- 266 Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201 G V TPGR+ D+++ + + V LVLDEAD +L +GF+ QI I ++P Q Sbjct: 267 GVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLD--MGFEPQIRKIVKEVPVQRQ 324 Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKR-DE-ISLEGIKQYVVNVDKEEWKFDTLCDI 259 ++ +AT K + ++ + + V++ + DE ++ + I Q++ V E + + Sbjct: 325 TLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQIL 384 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 ++ +IFC+TKK D LS+ L + NF ++HGD Q ERD V++ FR G S VL Sbjct: 385 RSKEPGSKIIIFCSTKKMCDQLSRNLTR-NFGAAAIHGDKSQGERDYVLSQFRAGRSPVL 443 Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKAD 373 ++TDV ARG+D++ + +VINYD P IE+Y+HRIGR+GR G G+A F + D Sbjct: 444 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQD 497 >gi|2275211 (AC002337) RNA helicase isolog [Arabidopsis thaliana] Length = 748 Score = 203 bits (511), Expect = 2e-51 Identities = 121/360 (33%), Positives = 205/360 (56%), Gaps = 20/360 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E ++ I +E P++IQ +A+ ++SG+DVI A++G+GKTA F + ++ I Sbjct: 231 EDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI 290 Query: 86 DLRKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQ 139 + + +LQ +I +PTRELA QI K + A+ GG + + K++ Sbjct: 291 -MDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL- 348 Query: 140 KHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKN 199 K GC+ V TPGR++DM+K + L LVLDEAD + LGF+ Q+ I ++ + Sbjct: 349 KAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD--LGFEPQVRSIVGQIRPD 406 Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNV-----DKEEWKFD 254 Q ++ SATM + ++ R+ ++DP+++ V ++ E I Q VVNV +K W + Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQ-VVNVIPSDAEKLPWLLE 465 Query: 255 TLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTG 314 L + D + ++F + K VD + +L ++F V ++HGD Q R + + F++G Sbjct: 466 KLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSG 522 Query: 315 HSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG-RKGVAINFITKAD 373 VLI+TDV ARG+D++ + V+NYD+ + ++ ++HRIGR+GR G R GVA +T+ + Sbjct: 523 VHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582 >gi|1363325|pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U25746) RNA helicase [Rattus norvegicus] Length = 1032 Score = 202 bits (508), Expect = 4e-51 Identities = 115/375 (30%), Positives = 216/375 (56%), Gaps = 15/375 (4%) Query: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93 +L + +G+E P+ IQ++AI I+SG+D+I A++G+GKT F + + + I + ++ L+ Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI-MDQRSLE 441 Query: 94 ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 A+I++PTRELA QI + K + + + GG + + + ++ K G + + Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL-KRGAEIIV 500 Query: 148 GTPGRVLDMIKK---QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 TPGR++DM+ ++ R V +VLDEAD + +GF+ Q+ I + + Q V+ Sbjct: 501 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD--MGFEPQVMRIVDNVRPDRQTVM 558 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + R+ ++ P+++ V + ++Q V+ +++E+ KF L ++ Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK-KFLKLLELLGHYQ 617 Query: 265 IT-QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 + +IF + ++ D L + L+++++ +S+HG + Q +RD ++NDF+ G ++L++T Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATS 677 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383 V ARG+DV+ + LV+NY P E+Y+HR GR+GR G KG A FIT+ +I K Sbjct: 678 VAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKA 737 Query: 384 YSIKINPMPANFAEL 398 + +P + +L Sbjct: 738 LELSGTAVPPDLEKL 752 >gi|3882323|gnl|PID|d1035502 (AB018344) KIAA0801 protein [Homo sapiens] Length = 1032 Score = 202 bits (508), Expect = 4e-51 Identities = 115/375 (30%), Positives = 216/375 (56%), Gaps = 15/375 (4%) Query: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93 +L + +G+E P+ IQ++AI I+SG+D+I A++G+GKT F + + + I + ++ L+ Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI-MDQRSLE 441 Query: 94 ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 A+I++PTRELA QI + K + + + GG + + + ++ K G + + Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL-KRGAEIIV 500 Query: 148 GTPGRVLDMIKK---QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 TPGR++DM+ ++ R V +VLDEAD + +GF+ Q+ I + + Q V+ Sbjct: 501 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD--MGFEPQVMRIVDNVRPDRQTVM 558 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264 SAT + + + R+ ++ P+++ V + ++Q V+ +++E+ KF L ++ Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK-KFLKLLELLGHYQ 617 Query: 265 IT-QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323 + +IF + ++ D L + L+++++ +S+HG + Q +RD ++NDF+ G ++L++T Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATS 677 Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383 V ARG+DV+ + LV+NY P E+Y+HR GR+GR G KG A FIT+ +I K Sbjct: 678 VAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKA 737 Query: 384 YSIKINPMPANFAEL 398 + +P + +L Sbjct: 738 LELSGTAVPPDLEKL 752 >gi|1731006|sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA INTERGENIC REGION >gi|1303839|gnl|PID|d1013174 (D84432) YqfR [Bacillus subtilis] >gi|2634947|emb|CAB14444| (Z99116) similar to ATP-dependent RNA helicase [Bacillus subtilis] Length = 438 Score = 198 bits (499), Expect = 4e-50 Identities = 123/362 (33%), Positives = 192/362 (52%), Gaps = 11/362 (3%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E LK ++ ++ GF P+ IQ R I ++ + VI Q+Q+GTGKT + + LL I Sbjct: 7 ELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKI 66 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNL-----GDYMNVNAFAITGGKTLKDDLKKMQK 140 D K +Q +I +PTRELA+QI Q + G + F K D K+Q Sbjct: 67 DPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQP 126 Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 H V GTPGR+ D+IK+Q L + LV+DEAD +L +GF + I +++P++ Sbjct: 127 H---LVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLD--MGFLADVDYIGSRMPEDL 181 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260 Q++V SAT+ + + +K+M +P V+ +++ I ++++ K K L DI Sbjct: 182 QMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKI-EHILIPSKHRDKDKLLFDIM 240 Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320 L ++F NTK D ++Q L + +HG + ER KVM +I Sbjct: 241 SHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYII 300 Query: 321 STDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREI 380 +TD+ ARGID++ VS VINY+LP+ ++ Y+HR+GR+ R G G A+ D L + Sbjct: 301 ATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRL 360 Query: 381 EK 382 EK Sbjct: 361 EK 362 >gi|2463519|dbj||AB005147_1 (AB005147) vas [Danio rerio] Length = 716 Score = 198 bits (498), Expect = 6e-50 Identities = 127/400 (31%), Positives = 215/400 (53%), Gaps = 19/400 (4%) Query: 1 MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60 ++FD+ +D E L D L + + G+ P+ +Q I I +G Sbjct: 255 INFDKYDDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAG 314 Query: 61 KDVIAQAQSGTGKTATFTIGLLQ-----AIDLRK----KDLQALILSPTRELASQIGQVV 111 +D++A AQ+G+GKTA F + +LQ + K ++ +A+I++PTREL +QI Sbjct: 315 RDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEA 374 Query: 112 KNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLV 171 + V + GG ++++ K GC + TPGR+ D+I + + V+ LV Sbjct: 375 RKFAYGTCVRPVVVYGGINTGYTIREVLK-GCNVLCATPGRLHDLIGRGKIGLSKVRYLV 433 Query: 172 LDEADELLSETLGFKQQIYDIFAK--LP--KNCQVVVVSATMNKDILEVTRKFMN-DPVK 226 LDEAD +L +GF+ ++ + A +P + Q ++ SAT +DI + F+ D + Sbjct: 434 LDEADRMLD--MGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIF 491 Query: 227 ILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLI 286 + V + ++Q VV VD+ K D L ++ + + ++F TK+ D+++ L Sbjct: 492 LAVGVVGGACSDVEQTVVQVDQYS-KRDQLLELLRATGNERTMVFVETKRSADFIATFLC 550 Query: 287 QSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEII 346 Q + S+HGD +Q ER+K ++DFR GH VL++T V ARG+D++QV V+N+D+P I Sbjct: 551 QEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSI 610 Query: 347 ENYIHRIGRSGRFGRKGVAINFIT-KADLAKLREIEKFYS 385 + Y+HRIGR+GR G G A++F ++D R + K S Sbjct: 611 DEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLS 650 >gi|2558535|emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Danio rerio] Length = 700 Score = 198 bits (497), Expect = 8e-50 Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 19/400 (4%) Query: 1 MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60 ++FD+ +D E L D L + + G+ P+ +Q I I +G Sbjct: 239 INFDKYDDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAG 298 Query: 61 KDVIAQAQSGTGKTATFTIGLLQ-----AIDLRK----KDLQALILSPTRELASQIGQVV 111 +D++A AQ+G+GKTA F + +LQ + K ++ +A+I++PTREL +QI Sbjct: 299 RDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEA 358 Query: 112 KNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLV 171 + V + GG ++++ K GC + TPGR+ D+I + + V+ LV Sbjct: 359 RKFAYGTCVRPVVVYGGINTGYTIREVLK-GCNVLCATPGRLHDLIGRGKIGLSKVRYLV 417 Query: 172 LDEADELLSETLGFKQQIYDIFAK--LP--KNCQVVVVSATMNKDILEVTRKFMN-DPVK 226 LDEAD +L +GF+ ++ + A +P + Q ++ SAT +DI + F+ D + Sbjct: 418 LDEADRMLD--MGFEPEMRKLVASPGMPSKEKRQTLMFSATYPEDIQRMAADFLKVDYIF 475 Query: 227 ILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLI 286 + V + ++Q +V VD+ K D L ++ + + ++F TK+ D+++ L Sbjct: 476 LAVGVVGGACSDVEQTIVQVDQYS-KRDQLLELLRATGNERTMVFVETKRSADFIATFLC 534 Query: 287 QSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEII 346 Q + S+HGD +Q ER+K ++DFR GH VL++T V ARG+D++QV V+N+D+P I Sbjct: 535 QEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSI 594 Query: 347 ENYIHRIGRSGRFGRKGVAINFIT-KADLAKLREIEKFYS 385 + Y+HRIGR+GR G G A++F ++D R + K S Sbjct: 595 DEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLS 634 >gi|1351656|sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C30D11.03 >gi|2130403|pir||S62561 hypothetical protein SPAC30D11.03 - fission yeast (Schizosaccharomyces pombe) >gi|1065890|emb|CAA91889| (Z67961) ATP dependent RNA helicase [Schizosaccharomyces pombe] Length = 754 Score = 197 bits (495), Expect = 1e-49 Identities = 118/363 (32%), Positives = 196/363 (53%), Gaps = 9/363 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 +SMNL +L+G+ + GFE P+ IQ + I + GKD++ A +G+GKTA F + +L+ + Sbjct: 262 QSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERL 321 Query: 86 DLRKKDL---QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG 142 R K + + LIL PTRELA Q V + + ++ GG +LK ++++K Sbjct: 322 LYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRP 381 Query: 143 CQAVSGTPGRVLD-MIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201 V TPGR +D M Q N++++V+DEAD +L + GF ++ +I PK+ Q Sbjct: 382 -DIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED--GFADELNEIIQACPKSRQ 438 Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNV--DKEEWKFDTLCDI 259 ++ SATM + ++ R +N PV++ V + + + + Q V V +E + L + Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYL 498 Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319 L + +IF +K + + +HG + QE+R + + DFR G L Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYL 558 Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379 ++TDV +RGID++ + +VINY+ P E Y+HR+GR+ R GR G AI + D L+ Sbjct: 559 LATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKG 618 Query: 380 IEK 382 + K Sbjct: 619 VFK 621 >gi|3641|emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae] Length = 618 Score = 196 bits (494), Expect = 2e-49 Identities = 127/392 (32%), Positives = 210/392 (53%), Gaps = 29/392 (7%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL------- 82 L + L+ I F P+ +Q +I + G+D++A AQ+G+GKT F L Sbjct: 162 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 221 Query: 83 --------QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134 Q+ RK AL+L+PTRELA+QI + + V + GG + + Sbjct: 222 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 281 Query: 135 LKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA 194 ++++ + GC + TPGR+ D++++ + N++ LVLDEAD +L +GF+ QI I Sbjct: 282 MREVDR-GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD--MGFEPQIRHIVE 338 Query: 195 KLP----KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ---YVVNVD 247 + +N Q ++ SAT DI + R F+++ + + V R + E I Q YV ++D Sbjct: 339 ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMD 398 Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307 K+ D L + LT+ IF TK+ D L+ LI NF ++HGD Q ER++ Sbjct: 399 KKSALLDLLSAEHKGLTL----IFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERA 454 Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367 ++ F+ + +L++T V ARG+D+ V+ VINYDLP I++Y+HRIGR+GR G GVA + Sbjct: 455 LSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATS 514 Query: 368 FITKADLAKLREIEKFYSIKINPMPANFAELS 399 F + ++ + + + +P ++LS Sbjct: 515 FFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 546 >gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP1 (HELICASE CA1) >gi|2132404|pir||S62003 probable ATP-dependent RNA helicase DBP1 - yeast (Saccharomyces cerevisiae) >gi|1163095 (U43503) Dbp1p,Lph8p [Saccharomyces cerevisiae] Length = 617 Score = 196 bits (494), Expect = 2e-49 Identities = 127/392 (32%), Positives = 210/392 (53%), Gaps = 29/392 (7%) Query: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL------- 82 L + L+ I F P+ +Q +I + G+D++A AQ+G+GKT F L Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220 Query: 83 --------QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134 Q+ RK AL+L+PTRELA+QI + + V + GG + + Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280 Query: 135 LKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA 194 ++++ + GC + TPGR+ D++++ + N++ LVLDEAD +L +GF+ QI I Sbjct: 281 MREVDR-GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD--MGFEPQIRHIVE 337 Query: 195 KLP----KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ---YVVNVD 247 + +N Q ++ SAT DI + R F+++ + + V R + E I Q YV ++D Sbjct: 338 ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMD 397 Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307 K+ D L + LT+ IF TK+ D L+ LI NF ++HGD Q ER++ Sbjct: 398 KKSALLDLLSAEHKGLTL----IFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERA 453 Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367 ++ F+ + +L++T V ARG+D+ V+ VINYDLP I++Y+HRIGR+GR G GVA + Sbjct: 454 LSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATS 513 Query: 368 FITKADLAKLREIEKFYSIKINPMPANFAELS 399 F + ++ + + + +P ++LS Sbjct: 514 FFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545 >gi|2072674|emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculosis] Length = 527 Score = 196 bits (494), Expect = 2e-49 Identities = 128/388 (32%), Positives = 206/388 (52%), Gaps = 27/388 (6%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + ++D+++R + G + P +IQ + + G+DVI QA++G GKT F + LLQ I Sbjct: 15 LGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITS 74 Query: 88 RKKDL------QALILSPTRELASQIGQVVKNLGDYMN--------------VNAFAITG 127 +AL++ PTREL Q+ + G Y+ ++ +I G Sbjct: 75 GDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYG 134 Query: 128 GKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ 187 G+ + ++ ++ G V GTPGR+LD+ ++ LQ + +LVLDEADE+L LGF Sbjct: 135 GRPYEPQIEALRA-GADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLD--LGFLP 191 Query: 188 QIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISL--EGIKQYVVN 245 I I ++P + Q ++ SATM I+ + R FM P I + S + +Q+V Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 Query: 246 VDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERD 305 + K + + + + +IF TK+ ++ L + FAV ++HGD+ Q R+ Sbjct: 252 AHALD-KVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLARE 310 Query: 306 KVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA 365 K + FRTG VL++TDV ARGID+ V+ VINY PE + Y+HRIGR+GR GR GVA Sbjct: 311 KALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVA 370 Query: 366 INFITKADLAKLREIEKFYSIKINPMPA 393 + + +L + I++ + +P PA Sbjct: 371 VTLVDWDELPRWSMIDQALGLG-SPDPA 397 >gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [Arabidopsis thaliana] Length = 845 Score = 196 bits (493), Expect = 2e-49 Identities = 116/371 (31%), Positives = 207/371 (55%), Gaps = 7/371 (1%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 ES+NL ++ I G++ P+ IQ + + I+SG DV+A A++G+GKTA F I +L+ + Sbjct: 31 ESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKL 90 Query: 86 D--LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143 + + ++ALILSPTR+LA Q + K LG + ++ + GG +++D +++ K G Sbjct: 91 KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTK-GP 149 Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202 + TPGR++ ++ + + R V+ +V DEAD L +GF +Q++ I +L +N Q Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG--MGFAEQLHQILTQLSENRQT 207 Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262 ++ SAT+ + E + + +P + + + +K + V EE L + + Sbjct: 208 LLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREH 267 Query: 263 LTITQ-CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321 ++ Q +IF +TK V++++ N +GDM Q+ R ++ FR + +LI Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327 Query: 322 TDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381 TD+ ARGID+ + VIN+D P + ++HR+GR+ R GR G A +F+T D+ + ++ Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLH 387 Query: 382 KFYSIKINPMP 392 F S + P P Sbjct: 388 LFLSKPVRPAP 398 >gi|1944405|gnl|PID|d1020349 (D86601) DEAD family RNA helicase; germ cell specific in Bombyx 5th instar larva, a material factor [Bombyx mori] Length = 601 Score = 196 bits (492), Expect = 3e-49 Identities = 119/372 (31%), Positives = 205/372 (54%), Gaps = 20/372 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E+ NL+ +L + G+ P+ IQ AI I+SG+D++ AQ+G+GKTA F + ++ + Sbjct: 183 ETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINML 242 Query: 86 DLRKKDL---------QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 KDL Q +I+SPTREL QI + Y +V A+ G T Sbjct: 243 LQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFS-YGSVLKVAVAYGGTAVRHQG 301 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGF-----KQQIYD 191 GC + TPGR+ D +++ + +V+ +VLDEAD +L +GF K ++ Sbjct: 302 DNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD--MGFMPSIEKMMLHP 359 Query: 192 IFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW 251 + K Q ++ SAT +DI + +F+N+ + + V + ++Q + V K E Sbjct: 360 TMVETTKR-QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE- 417 Query: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311 K ++L + + + ++F TK+ D+++ L + S+HGD Q ER++ + +F Sbjct: 418 KRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF 477 Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-T 370 ++G +L++T V ARG+D++ V +V+NYDLP+ I+ Y+HRIGR+GR G +G A++F + Sbjct: 478 KSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDS 537 Query: 371 KADLAKLREIEK 382 DLA + ++ K Sbjct: 538 DQDLALVADLSK 549 >gi|3845295 (AE001421) RNA helicase [Plasmodium falciparum] Length = 562 Score = 195 bits (490), Expect = 5e-49 Identities = 122/367 (33%), Positives = 201/367 (54%), Gaps = 10/367 (2%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E +N+ +++L I G++ P+ IQ + KD+I +++G+GKTA F I +LQ + Sbjct: 159 EDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDL 218 Query: 86 DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145 + K+ AL++SPTREL QI Q + LG + +N I GG + + K Sbjct: 219 KVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVI 278 Query: 146 VSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204 VS TPGR+LD + + +N++ LV DEAD+LLS+ F+ I + LP N + Sbjct: 279 VS-TPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQ--DFESSINKLLLILPPNRITFL 335 Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEG-IKQYVVNVDKEEWKF-DTLCDIYDS 262 SATM K++ ++ + + +PVK+ V ++ I+ Y+ K ++ + +LC Y + Sbjct: 336 FSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQT 395 Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 I C T +K+++ + L + +HG + Q +R +N F+ +LIST Sbjct: 396 RNIIIFTNTCATAQKLNFFCRNL---GLKSICLHGKLTQNQRLSSLNSFKVNKYNILIST 452 Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 V ARG+D+Q + +VIN+D+ E YIHR+GR+ R GR G +I F+T+ D+ IEK Sbjct: 453 QVGARGLDLQDIKIVINFDICSCKE-YIHRVGRTARAGRSGKSITFVTQYDVENFLAIEK 511 Query: 383 FYSIKIN 389 + KI+ Sbjct: 512 QLNKKID 518 >gi|529704 (U13070) similar to RNA helicases [Caenorhabditis elegans] Length = 701 Score = 194 bits (489), Expect = 7e-49 Identities = 124/384 (32%), Positives = 199/384 (51%), Gaps = 38/384 (9%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E D++ + + G+ P+ IQ +AI + +DVI A++G+GKTA F + LL I Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI 363 Query: 86 -DLRKKDLQ--------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 L K + Q A+I++PTRELA QI + G + + ++ GG + +D Sbjct: 364 TSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGM 423 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196 K++ G + V TPGR+LD+++ + L ++LDEAD +L +GF+ + + + Sbjct: 424 KLRM-GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLD--MGFEPDVQKVLEYM 480 Query: 197 P-------------------------KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKR 231 P K Q V+ +ATM+ I + R+++ P + + Sbjct: 481 PDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGS 540 Query: 232 DEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFA 291 E ++Q V V E+ K L ++ +S +IF N KK D LS+ L + F Sbjct: 541 AGKPTERVEQVVYMVP-EDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFK 599 Query: 292 VVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIH 351 +HG Q++R+ + + G S +L++TDV RGIDV+ VSLV+NYD+ + IE+Y H Sbjct: 600 PTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTH 659 Query: 352 RIGRSGRFGRKGVAINFITKADLA 375 RIGR+GR G+ G AI F+T D A Sbjct: 660 RIGRTGRAGKHGKAITFLTPDDTA 683 >gi|4126714|gnl|PID|d1037697 (AB016603) DEAD-Box Protein [Ciona intestinalis] Length = 669 Score = 194 bits (488), Expect = 9e-49 Identities = 123/391 (31%), Positives = 210/391 (53%), Gaps = 25/391 (6%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E NL++ +L + G++ P+ +Q +I I + +D++A AQ+G+GKTA F + +L + Sbjct: 216 EMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKL 275 Query: 86 D---------LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 KK QA+I+ PTREL +QI + ++ + GG ++ ++ Sbjct: 276 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 335 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196 +QK GC + TPGR++D I + ++ NV+ ++LDEAD +L +GF+ +I + + L Sbjct: 336 AVQK-GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLD--MGFESEIRKLVS-L 391 Query: 197 P-----KNCQVVVVSATMNKDILEVTRKFMNDPVKIL-VKRDEISLEGIKQYVVNV---D 247 P N ++ SAT +I ++ F+ + L V R + + Q V++V D Sbjct: 392 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 451 Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307 K + + D+ + T ++ ++F TK+ D+L+ L Q +F S+HGD Q++R++ Sbjct: 452 KRSKLLELIADVNE--TKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQA 509 Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367 + DF+ +L++T V ARG+D+ +V VINYD+P I+ Y+HRIGR+GR G G A Sbjct: 510 LRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATT 569 Query: 368 FI-TKADLAKLREIEKFYSIKINPMPANFAE 397 F K D R + K S +P E Sbjct: 570 FFDNKKDANLARSLVKILSEAQQEVPGWLGE 600 >gi|4126716|gnl|PID|d1037698 (AB016604) DEAD-Box Protein [Ciona intestinalis] Length = 659 Score = 194 bits (488), Expect = 9e-49 Identities = 123/391 (31%), Positives = 210/391 (53%), Gaps = 25/391 (6%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E NL++ +L + G++ P+ +Q +I I + +D++A AQ+G+GKTA F + +L + Sbjct: 206 EMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKL 265 Query: 86 D---------LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 KK QA+I+ PTREL +QI + ++ + GG ++ ++ Sbjct: 266 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 325 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196 +QK GC + TPGR++D I + ++ NV+ ++LDEAD +L +GF+ +I + + L Sbjct: 326 AVQK-GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLD--MGFESEIRKLVS-L 381 Query: 197 P-----KNCQVVVVSATMNKDILEVTRKFMNDPVKIL-VKRDEISLEGIKQYVVNV---D 247 P N ++ SAT +I ++ F+ + L V R + + Q V++V D Sbjct: 382 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 441 Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307 K + + D+ + T ++ ++F TK+ D+L+ L Q +F S+HGD Q++R++ Sbjct: 442 KRSKLLELIADVNE--TKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQA 499 Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367 + DF+ +L++T V ARG+D+ +V VINYD+P I+ Y+HRIGR+GR G G A Sbjct: 500 LRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATT 559 Query: 368 FI-TKADLAKLREIEKFYSIKINPMPANFAE 397 F K D R + K S +P E Sbjct: 560 FFDNKKDANLARSLVKILSEAQQEVPGWLGE 590 >gi|2134051|pir||I51235 DEAD box protein - African clawed frog (fragment) >gi|2896107 (AF046043) DEAD box protein [Xenopus laevis] Length = 700 Score = 194 bits (487), Expect = 1e-48 Identities = 118/362 (32%), Positives = 203/362 (55%), Gaps = 18/362 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTI------ 79 E NL + L R + G+ + +Q +I I++G+D++A AQ+G+GKTA F + Sbjct: 277 EEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYM 336 Query: 80 ---GLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 G+ + L+ ++ +A+I++PTREL +QI + V + GG ++ Sbjct: 337 MNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMR 396 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAK- 195 ++K GC + TPGR+LD++ K+ + ++ LVLDEAD +L +GF +I + K Sbjct: 397 DVEK-GCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLD--MGFAPEIEKLMTKP 453 Query: 196 ---LPKNCQVVVVSATMNKDILEVTRKFM-NDPVKILVKRDEISLEGIKQYVVNVDKEEW 251 + Q ++ SAT ++I + ++ ++ + ++V + + Q V+ + +E Sbjct: 454 GMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEM-RENG 512 Query: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311 K + L +I S + +IF NTKKK D+++ L Q F+ S+HGD +Q +R+ + DF Sbjct: 513 KMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDF 572 Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371 RTG V++ T V ARG+D++ V VINYD+P+ ++ Y+HRIGR+GR G G A +F Sbjct: 573 RTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNV 632 Query: 372 AD 373 D Sbjct: 633 QD 634 >gi|1076837|pir||S53813 probable RNA helicase - slime mold (Dictyostelium discoideum) >gi|1076843|pir||S49262 RNA helicase - slime mold (Dictyostelium discoideum) (fragment) >gi|550331|emb|CAA57418| (X81824) putative RNA helicase [Dictyostelium discoideum] Length = 566 Score = 193 bits (485), Expect = 2e-48 Identities = 118/396 (29%), Positives = 207/396 (51%), Gaps = 32/396 (8%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + NL ++L I G+E PS IQ ++I ++G+D++ A++G+GKT F I +L I Sbjct: 148 QESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYI 207 Query: 86 DLRK---KDLQA-----LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKK 137 + KD +A L+++PTREL QI + +N + ++ GG++++D + Sbjct: 208 SKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQ 267 Query: 138 MQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197 + K GC+ + TPGR+ D ++K+ L +VLDEAD ++ LGF+ Q+ + +P Sbjct: 268 VSK-GCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMID--LGFEPQVTSVLDAMP 324 Query: 198 KNC---------------------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISL 236 + ++ SATM + ++++K++ P I + + Sbjct: 325 SSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVV 384 Query: 237 EGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMH 296 + I+Q V+ V E K + L + +IF N KK D ++ L + + +H Sbjct: 385 DRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILH 444 Query: 297 GDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRS 356 QE+R+ + F+ VLI+T V +RGI V V+ VIN+D+P+ IE+Y HRIGR+ Sbjct: 445 SGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRT 504 Query: 357 GRFGRKGVAINFITKADLAKLREIEKFYSIKINPMP 392 GR G G+A +FIT D+ + ++++ + N +P Sbjct: 505 GRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVP 540 >gi|3986287|gnl|PID|d1035980 (AB017003) DjVLGB [Dugesia japonica] Length = 781 Score = 192 bits (482), Expect = 4e-48 Identities = 123/357 (34%), Positives = 198/357 (55%), Gaps = 18/357 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + + L + I ++ P+ IQ AI I+ +D++A AQ+G+GKTA F I ++ + Sbjct: 187 DELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 246 Query: 86 ---DLRKKDL------QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 DL ++ + LIL+PTRELA QI + + + + GG ++ Sbjct: 247 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR 306 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIF--A 194 ++Q GC + TPGR++D I+K + + +VLDEAD +L +GF+ QI I + Sbjct: 307 EVQM-GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD--MGFEPQIRKIIEES 363 Query: 195 KLPK--NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWK 252 +P N Q ++ SAT K+I ++ F+ + + + V R + + IKQ ++ + E K Sbjct: 364 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVE-K 422 Query: 253 FDTLCDIYDSLTI-TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311 + L +I+++ T +IF TKK D L++ L+ + V S+HGD Q ER+ ++ F Sbjct: 423 LNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMF 482 Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINF 368 R G +L++T V ARG+D+ V VINYDLP IE Y+HRIGR+GR G G A +F Sbjct: 483 RNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSF 539 >gi|84895|pir||A31922 ATP-dependent RNA helicase homolog - fruit fly (Drosophila melanogaster) >gi|158796 (M23560) Mab4611 antigen (vasa) [Drosophila melanogaster] Length = 648 Score = 189 bits (475), Expect = 3e-47 Identities = 119/368 (32%), Positives = 201/368 (54%), Gaps = 21/368 (5%) Query: 27 SMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI- 85 S +L+D ++ + G++ P+ IQ +I I SG+D++A AQ+G+GKTA F + +L + Sbjct: 236 SADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 295 Query: 86 ----DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 +L Q I+SPTRELA QI + + + GG + + + + + Sbjct: 296 EDPHELELGRPQVCIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR- 354 Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL---PK 198 GC V TPGR+LD + + + + + +VLDEAD +L +GF + + I + P+ Sbjct: 355 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD--MGFSEDMRRIMTHVTMRPE 412 Query: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD 258 + Q ++ SAT ++I + +F+ + V + + + +KQ + V+K K L + Sbjct: 413 H-QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA-KRSKLIE 470 Query: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318 I S ++F TK+ D+L+ L + F S+HGD Q +R++ + DF+ G +V Sbjct: 471 IL-SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 529 Query: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-------TK 371 LI+T V +RG+D++ + VINYD+P I++Y+HRIGR+GR G G A +F Sbjct: 530 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPEKDRAIA 589 Query: 372 ADLAKLRE 379 ADL K+ E Sbjct: 590 ADLVKILE 597 >gi|1352826|sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CAA31405| (X12945) vasa [Drosophila melanogaster] Length = 661 Score = 189 bits (475), Expect = 3e-47 Identities = 119/368 (32%), Positives = 201/368 (54%), Gaps = 21/368 (5%) Query: 27 SMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI- 85 S +L+D ++ + GF+ P+ IQ +I I SG+D++A AQ+G+GKTA F + +L + Sbjct: 249 SADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 308 Query: 86 ----DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 +L Q +I+SPTRELA QI + + + GG + + + + + Sbjct: 309 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR- 367 Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL---PK 198 GC V TPGR+LD + + + + + +VLDEAD +L +GF + + I + P+ Sbjct: 368 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD--MGFSEDMRRIMTHVTMRPE 425 Query: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD 258 + Q ++ SAT ++I + +F+ + V + + + +KQ + V+K K L + Sbjct: 426 H-QTLMFSATFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYA-KRSKLIE 483 Query: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318 I S ++F TK+ D+L+ L + F S+HGD Q +R++ + DF+ G +V Sbjct: 484 IL-SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542 Query: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-------TK 371 LI+T V +RG+D++ + VINYD+P I++Y+HRIGR+G G G A +F Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPEKDRAIA 602 Query: 372 ADLAKLRE 379 ADL K+ E Sbjct: 603 ADLVKILE 610 >gi|2500525|sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLOG) (MVH) >gi|2137271|pir||I49638 Drosophila vasa homologue - mouse (fragment) >gi|286075|gnl|PID|d1004095 (D14859) Drosophila vasa homologue [Mus musculus] Length = 637 Score = 188 bits (473), Expect = 5e-47 Identities = 124/389 (31%), Positives = 214/389 (54%), Gaps = 19/389 (4%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E NL L I G+ + +Q I +++G+D++A AQ+G+GKTA F + +L + Sbjct: 205 EEANLCQTLNNNIRKAGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPILAHM 264 Query: 86 ------DLRKKDLQ---ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 R K+LQ +I++PTREL +QI + V + I GG ++ Sbjct: 265 MRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVISVVIYGGTQFGHSVR 324 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA-- 194 ++ + GC + TPGR++D+I K+ + + V+ LVLDEAD +L +GF +I + + Sbjct: 325 QIVQ-GCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADSMLD--MGFAPEIKKLISCP 381 Query: 195 --KLPKNCQVVVVSATMNKDILEVTRKFM-NDPVKILVKRDEISLEGIKQYVVNVDKEEW 251 + Q ++ SAT ++I + F+ ++ + + V + + ++Q ++ V + + Sbjct: 382 GMPSKEQHQTLLFSATFPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQYQ- 440 Query: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311 K +L Y+++ + ++F TKKK D+++ L Q + S+HGD +Q ER++ + DF Sbjct: 441 KEKSLLRFYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDF 500 Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-T 370 R G VL++T V ARG+D++ V VIN+DLP I+ Y+HRIGR+GR G G AI+F T Sbjct: 501 RCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDT 560 Query: 371 KADLAKLREIEKFYSIKINPMPANFAELS 399 +D + + K S +PA E++ Sbjct: 561 DSDNHLAQPLVKVLSDAQQDVPAWLEEIA 589 >gi|2500526|sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) (RVLG) >gi|1083795|pir||JC2534 RVLG protein - rat >gi|806464|bbs|159938 (S75275) vasa-like gene protein, RVLG protein=putative DEAD box protein [rats, Wistar-Imanishi, testis, Peptide, 713 aa] [Rattus sp.] Length = 713 Score = 185 bits (466), Expect = 3e-46 Identities = 123/387 (31%), Positives = 213/387 (54%), Gaps = 15/387 (3%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 E NL L I G+ + +Q +I +++G+D++A AQ+G+GKTA F + +L + Sbjct: 276 EEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHM 335 Query: 86 ------DLRKKDLQ---ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 R K+LQ +I++PTREL +QI + V A I GG ++ Sbjct: 336 MRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIR 395 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196 ++ + GC + TPGR++D+I K+ + + V+ LVLDEAD +L G + + + Sbjct: 396 QIVQ-GCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGM 454 Query: 197 P--KNCQVVVVSATMNKDILEVTRKFM-NDPVKILVKRDEISLEGIKQYVVNVDKEEWKF 253 P + Q ++ SAT ++I + +F+ ++ + + V + + ++Q ++ V +K Sbjct: 455 PSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPV-FKK 513 Query: 254 DTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRT 313 L +I ++ + ++F TKKK D+++ L Q + S+HGD +Q ER++ + DFR Sbjct: 514 RKLVEILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 573 Query: 314 GHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-TKA 372 G VL++T V ARG+D++ V VIN++LP I+ Y+HRIGR+GR G G AI+F T++ Sbjct: 574 GKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 633 Query: 373 DLAKLREIEKFYSIKINPMPANFAELS 399 D + + K S +PA E++ Sbjct: 634 DNHLAQPLVKVLSDAQQDVPAWLEEIA 660 >gi|1723271|sp|Q10202|YAXB_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C13F4.11C >gi|2130219|pir||S67386 hypothetical protein - fission yeast (Schizosaccharomyces pombe) >gi|1184007|gnl|PID|e221943 (Z69379) unknown [Schizosaccharomyces pombe] >gi|3451298|emb|CAA20430| (AL031322) putative atp-dependent rna helicase [Schizosaccharomyces pombe] Length = 578 Score = 185 bits (466), Expect = 3e-46 Identities = 125/369 (33%), Positives = 196/369 (52%), Gaps = 21/369 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ-- 83 + +++ L G+ +Y + P+ IQ+ +++G+DV+ A++G+GKT F I LQ Sbjct: 170 DELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227 Query: 84 -AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG 142 + K + L++SPTRELA Q + + +L N+ A + GG + + + Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN-- 285 Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK---- 198 + GTPGR+LD+I + V LVLDEAD +L GF+Q I +I + P Sbjct: 286 ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDT--GFEQDIRNIISHTPDPTRN 343 Query: 199 -NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISL-EGIKQYVVNVDKEEWKFDTL 256 + Q V SAT + + + F+ DPVKI + DE++ + I Q V +D K L Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERML 403 Query: 257 CDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311 ++ + + +IF KK+ + L + + VV +HGDM Q R + +NDF Sbjct: 404 DNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDF 462 Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371 ++G VL++TDV ARG+D+ +V LVIN P IE+Y+HRIGR+GR KG AI F T Sbjct: 463 KSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522 Query: 372 ADLAKLREI 380 D + E+ Sbjct: 523 QDKSHAGEL 531 >gi|1170186|sp|P20448|DBP4_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP4 (HELICASE CA4) (HELICASE UF1) >gi|1078295|pir||S56805 probable RNA helicase CA4 - yeast (Saccharomyces cerevisiae) >gi|1008155|emb|CAA89324| (Z49308) ORF YJL033w [Saccharomyces cerevisiae] Length = 770 Score = 185 bits (464), Expect = 6e-46 Identities = 117/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + + + D L+G+ F + IQ+ +I + G DV+A A++G+GKT F + +++ + Sbjct: 44 KDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL 103 Query: 86 DLRK----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 K L ALI+SPTRELA QI +V+ +G + + +A + GGK +K +L+++ + Sbjct: 104 YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR- 162 Query: 142 GCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 + GTPGR+L + + + L T N+QMLVLDEAD L +GFK+ + I + L + Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD--MGFKKTLDAIVSTLSPSR 219 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKI--------LVKRDEISLEGIKQYVVNVDKEEWK 252 Q ++ SAT ++ + ++ R + D + V ++ + E ++Q+ + V + K Sbjct: 220 QTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD-K 278 Query: 253 FDTLCDIYDSLTITQCVIFCNTKKKVDWLSQ--RLIQSNFAVVSMHGDMKQEERDKVMND 310 D L S + ++F ++ K+V ++ + R +Q +++ +HG KQ R + ++ Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338 Query: 311 FRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFIT 370 F L +TDV ARGID V V+ D PE ++ YIHR+GR R+G+KG ++ +T Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398 Query: 371 KADLAKLREIEKFYSIKINPMPANFAE 397 + +++ + KI P N + Sbjct: 399 PQEQEAF--LKRLNARKIEPGKLNIKQ 423 >gi|1619952 (U72149) putative RNA helicase [Saccharomyces cerevisiae] Length = 770 Score = 185 bits (464), Expect = 6e-46 Identities = 117/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 + + + D L+G+ F + IQ+ +I + G DV+A A++G+GKT F + +++ + Sbjct: 44 KDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL 103 Query: 86 DLRK----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141 K L ALI+SPTRELA QI +V+ +G + + +A + GGK +K +L+++ + Sbjct: 104 YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR- 162 Query: 142 GCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200 + GTPGR+L + + + L T N+QMLVLDEAD L +GFK+ + I + L + Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD--MGFKKTLDAIVSTLSPSR 219 Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKI--------LVKRDEISLEGIKQYVVNVDKEEWK 252 Q ++ SAT ++ + ++ R + D + V ++ + E ++Q+ + V + K Sbjct: 220 QTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD-K 278 Query: 253 FDTLCDIYDSLTITQCVIFCNTKKKVDWLSQ--RLIQSNFAVVSMHGDMKQEERDKVMND 310 D L S + ++F ++ K+V ++ + R +Q +++ +HG KQ R + ++ Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338 Query: 311 FRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFIT 370 F L +TDV ARGID V V+ D PE ++ YIHR+GR R+G+KG ++ +T Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398 Query: 371 KADLAKLREIEKFYSIKINPMPANFAE 397 + +++ + KI P N + Sbjct: 399 PQEQEAF--LKRLNARKIEPGKLNIKQ 423 >gi|1172596|sp|P23394|PR28_YEAST PRE-MRNA SPLICING FACTOR RNA HELICASE PRP28 (HELICASE CA8) >gi|101502|pir||A39624 probable helicase (EC 3.6.1.-) PRP28 - yeast (Saccharomyces cerevisiae) >gi|666103|emb|CAA40255| (X56934) pre-mRNA splicing factor RNA helicase PRP28 (helicase CA8) [Saccharomyces cerevisiae] >gi|817829|emb|CAA89729| (Z49701) Prp28p [Saccharomyces cerevisiae] Length = 588 Score = 182 bits (458), Expect = 3e-45 Identities = 130/392 (33%), Positives = 213/392 (54%), Gaps = 38/392 (9%) Query: 33 DLLRGIYS-YGFEAPSSIQSRAITQIISGK---DVIAQAQSGTGKTATFTIGLLQAIDL- 87 DLLR I F +P+ IQ I + + K D + A +G+GKT F I +L + Sbjct: 183 DLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRS 242 Query: 88 --RKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNA------FAITGGKTLKD 133 R L+ ALIL+PTREL QI + + + + + +I GG +L + Sbjct: 243 PPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSL-E 301 Query: 134 DLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIF 193 ++ GC + TPGR++D ++ +L + V+ LVLDEAD+++ LGF+ Q+ +I Sbjct: 302 EISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMID--LGFEDQVTNIL 359 Query: 194 AKLPKNC------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVD 247 K+ N Q ++ +ATM I ++ +M PV + + S I+Q V D Sbjct: 360 TKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYAD 419 Query: 248 KEEWKFDTLCDI---YDSLTITQCVIFCNTKKKVDWLSQRLI-QSNFAVVSMHGDMKQEE 303 +E KF L I YD +IF N K+ DWL+++ ++N V +HG QE+ Sbjct: 420 NDEDKFKKLKPIVAKYDP----PIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQ 475 Query: 304 RDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363 R+ + FRT +++I+T+V ARG+D+ VSLV+N+ + + +++YIHRIGR+GR +G Sbjct: 476 REHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEG 535 Query: 364 VAINFITKA-DLAKLREIEKFYSIKINPMPAN 394 A++F++ A D + +RE+ K Y K +P+ +N Sbjct: 536 TAVSFVSAAEDESLIRELYK-YVRKHDPLNSN 566 >gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA HELICASE ROK1 >gi|2131186|pir||S59649 ATP-dependent RNA helicase ROK1 - yeast (Saccharomyces cerevisiae) >gi|607182|emb|CAA84384| (Z34901) ATP-dependent RNA helicase [Saccharomyces cerevisiae] >gi|971382|emb|CAA59758| (X85757) putative ATP dependent RNA helicase [Saccharomyces cerevisiae] >gi|1322774|emb|CAA96883| (Z72693) ORF YGL171w [Saccharomyces cerevisiae] Length = 564 Score = 176 bits (441), Expect = 3e-43 Identities = 121/378 (32%), Positives = 196/378 (51%), Gaps = 23/378 (6%) Query: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI--DLRKKD 91 LL + GF P+ IQ I ++ +DV+A +G+GKT F I L+Q I D + Sbjct: 133 LLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAG 192 Query: 92 LQALILSPTRELASQIG--------QVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143 L+ LI+SPT+ELA+QI ++ + V + + G LK+ + +K+ Sbjct: 193 LKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKY-- 250 Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK-NCQV 202 + TP R++D++K + L V+ L+ DEAD+L +T F +Q DI + + + + Sbjct: 251 DIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKT--FVEQSDDILSACREPSLRK 308 Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262 + SAT+ ++ E+ + M DPV++++ E + I+Q ++ EE K + + Sbjct: 309 AMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQE 368 Query: 263 LTITQ-CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321 +IF + + L L+ V +H + +RD+++ F+TG LI Sbjct: 369 GEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLIC 428 Query: 322 TDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381 TDV ARGID + V+LVINYD+P + Y+HRIGR+GR GR G AI F TK D ++ I Sbjct: 429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPI- 487 Query: 382 KFYSIKINPMPANFAELS 399 IN M + E+S Sbjct: 488 ------INVMKQSGCEVS 499 >gi|1764094 (U81597) ATP-dependent RNA helicase [Leishmania amazonensis] Length = 855 Score = 175 bits (439), Expect = 5e-43 Identities = 118/381 (30%), Positives = 199/381 (51%), Gaps = 15/381 (3%) Query: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85 +S NL+ LL I GF P+ IQ +AI ++ G DV+A A++G+GKTA F I +L + Sbjct: 27 QSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNTL 86 Query: 86 DLRKK--DLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143 K ++ L+LSPTREL+ QI + L ++++ A+ GG ++ + + + Sbjct: 87 KAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASNP- 145 Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVV 203 V TPGR+L ++++ L +V+ LVLDEAD L LG + QI I KLP++CQ Sbjct: 146 DIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFE--LGLQPQIGAIMQKLPESCQRA 203 Query: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263 + SATM + E T ++++PV I + + + +KQ V +E + + L Sbjct: 204 LFSATMPTVLAEFTSAWLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVL 263 Query: 264 TI-------TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316 + Q +IF +K V++L L + + ++HG M QE R + F S Sbjct: 264 HVGEAAANNAQALIFVESKFHVEFLLMILTAYSISTSAVHGQMDQEARRLAVRSFAKRES 323 Query: 317 RVLISTDVWARGIDVQ-QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLA 375 V++ TDV ARG + + ++ + P + ++HR+GR R GR G A + +T D Sbjct: 324 SVMVVTDVAARGYGLDLLLDNIVYFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFP 383 Query: 376 KLREIEKFYS--IKINPMPAN 394 ++ +F ++ +P+P + Sbjct: 384 YYVDLMQFIGRPLQSSPVPGD 404 >gi|2443870 (AC002985) R27090_2 [Homo sapiens] Length = 483 Score = 170 bits (427), Expect = 1e-41 Identities = 112/376 (29%), Positives = 189/376 (49%), Gaps = 6/376 (1%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87 + L L+ G + P+ +Q I I+ G+D + A++G+GKTA F + +LQ + Sbjct: 7 LGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66 Query: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147 + L+L+PTRELA QI + + LG + + I GG + ++ + V Sbjct: 67 DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP-HVVI 125 Query: 148 GTPGRVLDMIKKQ-MLQTRNVQMLVLDEADELLSE-TLGFKQQIYDIFAKLPKNCQVVVV 205 TPGR+ D ++ + ++ LV+DEAD LL + F + I A +P Q ++ Sbjct: 126 ATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLF 185 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVD---KEEWKFDTLCDIYDS 262 SAT+ + E+ N P + ++E + Q + V K+ + + D Sbjct: 186 SATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDE 245 Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 +IF NT K L L + +F V++H MKQ+ER + F++ R+LI+T Sbjct: 246 HEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIAT 305 Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 DV +RG+D+ V +VIN++ P + + YIHR+GR+ R GR+G AI +T+ D+ + IE+ Sbjct: 306 DVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365 Query: 383 FYSIKINPMPANFAEL 398 K+ AE+ Sbjct: 366 QIKKKLEEFSVEEAEV 381 >gi|1351666|sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1F7.02C >gi|2130294|pir||S62574 hypothetical protein SPAC1F7.02c - fission yeast (Schizosaccharomyces pombe) >gi|1067204|emb|CAA91949| (Z67998) unknown [Schizosaccharomyces pombe] Length = 578 Score = 166 bits (417), Expect = 2e-40 Identities = 118/381 (30%), Positives = 205/381 (52%), Gaps = 21/381 (5%) Query: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATF---TIGLLQA 84 + L +++ + I GFE + IQ R+I +++G+DV+ A++G+GKT F TI +L A Sbjct: 94 LQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYA 153 Query: 85 IDLRKKD-LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143 + + ++ +I+SPTRELA QI V K L Y + + GG + + K+ K G Sbjct: 154 LKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK-GV 212 Query: 144 QAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP-KNCQ 201 + TPGR+LD ++ RN++ LV+DEAD +L +GF+ ++ I LP +N Q Sbjct: 213 NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE--IGFEDEMRQIMKILPSENRQ 270 Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDE----ISLEGIKQYVVNVDKEEWKFDTLC 257 ++ SAT + ++ R + P + V D ++EG++Q V VD ++ +F L Sbjct: 271 TLLFSATQTTKVEDLARISLK-PGPLYVNVDSGKPTSTVEGLEQGYVVVDSDK-RFLLLF 328 Query: 258 DIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317 + ++F ++ V ++++ L + V+ +HG KQ+ R +F Sbjct: 329 SFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKG 388 Query: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV--AINFITKADLA 375 +L+ T+V ARG+D+ V ++ YD P+ +YIHR+GR+ R G KG ++ F+ ++L Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSELG 447 Query: 376 KLREIEKFYSIKIN--PMPAN 394 LR + K + +N PAN Sbjct: 448 FLRYL-KTAKVSLNEFEFPAN 467 >gi|1488647|emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea] Length = 685 Score = 159 bits (398), Expect = 3e-38 Identities = 116/390 (29%), Positives = 202/390 (51%), Gaps = 31/390 (7%) Query: 27 SMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA-I 85 S LKD L+ S G +A IQ+ +I G D++ +A++G GKT F + ++++ + Sbjct: 115 SKPLKDVLI----SKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLV 170 Query: 86 DLRKKDLQ---------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136 + R KDL+ L+L PTRELA+Q+ + G + + A ++ GG + Sbjct: 171 NGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQIS 230 Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196 + + G V GTPGRV D+++K +L+ ++ VLDEADE+L +GF + I K+ Sbjct: 231 SLTR-GVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLK--MGFVDDVELILGKV 287 Query: 197 P--KNCQVVVVSATMNKDILEVTRKFMNDPVKI--LVKRDEISLEGIKQYVVNVDKEEWK 252 Q ++ SAT+ + +++ +F+ K LV ++ +++V + Sbjct: 288 DHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASAR 347 Query: 253 FDTLCDIYDSL-TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311 D + DI + + +IF TK+ L+ L + +HGD++Q +R+ + F Sbjct: 348 PDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLTGAR----PLHGDIQQTQREVTLKGF 403 Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371 RTG L++T+V ARG+D+ V L+I + P +E+YIHR GR+GR G GVA+ + Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAV-MLYD 462 Query: 372 ADLAKLREIEKFYSIKIN----PMPANFAE 397 + + +IE+ +K P P + A+ Sbjct: 463 PKRSSVTKIERESGVKFEHLSAPQPVDVAK 492 >gi|1488521|emb|CAA68194| (X99938) RNA helicase [Arabidopsis thaliana] Length = 671 Score = 152 bits (380), Expect = 4e-36 Identities = 110/367 (29%), Positives = 185/367 (49%), Gaps = 23/367 (6%) Query: 42 GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI------DLRK----KD 91 G EA IQ+ ++ G D++ +A++G GKT F + +L+++ RK + Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174 Query: 92 LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPG 151 L+L PTRELA Q+ G + +++ + GG ++ K+ K G V GTPG Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSIPVQEGKL-KRGVDIVVGTPG 233 Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV--VVVSATM 209 R+ D I++Q L + VLDEADE+L +GF + + I K+ + +V ++ SAT+ Sbjct: 234 RIKDHIERQNLDFSYFKFRVLDEADEMLR--MGFVEDVELILGKVEDSTKVQTLLFSATL 291 Query: 210 NKDILEVTRKFMNDPVKI--LVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT- 266 + ++ +F+ K LV D++ +++ + + DI + Sbjct: 292 PSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGG 351 Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326 Q +IF TK +V LS L S ++HG++ Q +R+ + FR G L++T+V A Sbjct: 352 QTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAA 407 Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSI 386 RG+D+ V L+I + P +E YIHR GR+GR G GV + + + + + IEK I Sbjct: 408 RGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPVT-LYDSRKSSVSRIEKEAGI 466 Query: 387 KINPMPA 393 K + A Sbjct: 467 KFEHLAA 473 >gi|3775997|emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis thaliana] Length = 376 Score = 150 bits (375), Expect = 2e-35 Identities = 98/306 (32%), Positives = 160/306 (52%), Gaps = 5/306 (1%) Query: 94 ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRV 153 A +LSPTRELA QI + + LG +++ + GG + K + TPGR+ Sbjct: 12 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRP-HVIVATPGRL 70 Query: 154 LD-MIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKD 212 D M + ++++ LVLDEAD LL+E F++ + I ++P + + SATM K Sbjct: 71 WDHMSDTKGFSLKSLKYLVLDEADRLLNED--FEKSLNQILEEIPLERKTFLFSATMTKK 128 Query: 213 ILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFC 272 + ++ R + +PVKI +++ +KQ V ++K L I + + +IF Sbjct: 129 VRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFV-AAKYKDCYLVYILSEMPESTSMIFT 187 Query: 273 NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQ 332 T +L+ L F + + G M Q +R +N F+ G +L+ TDV +RG+D+ Sbjct: 188 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 247 Query: 333 QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMP 392 V +VINYD+P ++YIHR+GR+ R GR GV I+ + + +L +IEK K+ P Sbjct: 248 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYP 307 Query: 393 ANFAEL 398 A E+ Sbjct: 308 AEEDEV 313 >gi|3775995|emb|CAA09200| (AJ010461) RNA helicase [Arabidopsis thaliana] Length = 363 Score = 145 bits (361), Expect = 7e-34 Identities = 84/244 (34%), Positives = 140/244 (56%), Gaps = 5/244 (2%) Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNK 211 R++D++K+ L VQ +VLDEAD++L +GF + + I KLP Q ++ SATM Sbjct: 1 RIIDLMKRGALNLSEVQFVVLDEADQMLQ--VGFAEDVEIILQKLPAKRQSMMFSATMPS 58 Query: 212 DILEVTRKFMNDPVKI--LVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCV 269 I +T+K++N+P+ I + D+ +GI Y + D + + +C+ Sbjct: 59 WIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCI 118 Query: 270 IFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGI 329 +F TK+ D L+ L +S + ++HGD+ Q +R++ + FR G+ +L++TDV ARG+ Sbjct: 119 VFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGL 177 Query: 330 DVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN 389 DV V LVI+Y+LP E ++HR GR+GR G+KG AI + ++ IEK + N Sbjct: 178 DVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFN 237 Query: 390 PMPA 393 +P+ Sbjct: 238 ELPS 241 >gi|3327394 (AC004483) putative RNA helicase [Arabidopsis thaliana] Length = 845 Score = 143 bits (356), Expect = 3e-33 Identities = 112/390 (28%), Positives = 194/390 (49%), Gaps = 48/390 (12%) Query: 35 LRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQA 94 L+ + + G + +Q +++ + GKD + +A++GTGK+ F LL AI+ K + + Sbjct: 387 LKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAF---LLPAIETVLKAMNS 443 Query: 95 ------------LILSPTRELASQIGQVVKNL-GDYMNVNAFAITGGKTLKDDLKKMQKH 141 LIL PTRELASQI K L ++ + + GG + D ++++ Sbjct: 444 GKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESE 503 Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQML---VLDEADELLSETLGFKQQIYDIFAKLPK 198 CQ + TPGR+LD I+ + T + L ++DEAD LL LGFK+ + I LP+ Sbjct: 504 PCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD--LGFKRDVEKIIDCLPR 561 Query: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGI-----------KQYVVNVD 247 Q ++ SAT+ K++ V++ +++KRD ++ I KQ + V Sbjct: 562 QRQSLLFSATIPKEVRRVSQ--------LVLKRDHSYIDTIGLGCVETHDKVKQSCI-VA 612 Query: 248 KEEWKFDT----LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEE 303 E F L + +++ + ++FC+T + L + V +H Q Sbjct: 613 PHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLH 672 Query: 304 RDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363 R V ++F+ + +L+++DV ARG++ V+LVI +P E YIHR+GR+GR G+ G Sbjct: 673 RTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 732 Query: 364 VAINFITKADLAKLREIEKFYSIKINPMPA 393 + I + L E++ + + P+PA Sbjct: 733 KGLLLIAPWERYFLDELK---DLPLEPIPA 759 >gi|4832|emb|CAA41110| (X58099) eIF4a [Saccharomyces cerevisiae] Length = 89 Score = 127 bits (315), Expect = 2e-28 Identities = 61/87 (70%), Positives = 72/87 (82%) Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371 R+G SR+LISTD+ ARGIDVQQVSLVINYDLP ENYIHRIGR GRFGRKGVAINF+T Sbjct: 1 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN 60 Query: 372 ADLAKLREIEKFYSIKINPMPANFAEL 398 D+ +RE+EKFYS +I +P++ A L Sbjct: 61 EDVGAMRELEKFYSTQIEELPSDIATL 87 >gi|2367301 (AE000458) ATP-dependent DNA helicase [Escherichia coli] Length = 610 Score = 81.5 bits (198), Expect = 9e-15 Identities = 87/381 (22%), Positives = 159/381 (40%), Gaps = 47/381 (12%) Query: 40 SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99 ++G++ Q I ++SG+D + +G GK+ + I AL+L+ Sbjct: 22 TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 68 Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151 + S + ++K+ D + N A + +T + L+ M GC+ + P Sbjct: 69 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 126 Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205 R++ + L N +L +DEA + F+ Q+ F LP Sbjct: 127 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 186 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 T +DI+ + +NDP L++ I+ ++ K D L Sbjct: 187 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 238 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 +I+CN++ KV+ + RL + + H ++ R V F+ +++++T + Sbjct: 239 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 298 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378 GI+ V V+++D+P IE+Y GR+GR G A+ F AD+A LR Sbjct: 299 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 358 Query: 379 --EIEKFYSIKINPMPANFAE 397 +++ K+N M A FAE Sbjct: 359 QGQLQDIERHKLNAMGA-FAE 378 >gi|2851488|sp|P15043|RECQ_ECOLI ATP-DEPENDENT DNA HELICASE RECQ Length = 608 Score = 81.5 bits (198), Expect = 9e-15 Identities = 87/381 (22%), Positives = 159/381 (40%), Gaps = 47/381 (12%) Query: 40 SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99 ++G++ Q I ++SG+D + +G GK+ + I AL+L+ Sbjct: 20 TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 66 Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151 + S + ++K+ D + N A + +T + L+ M GC+ + P Sbjct: 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 124 Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205 R++ + L N +L +DEA + F+ Q+ F LP Sbjct: 125 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 184 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 T +DI+ + +NDP L++ I+ ++ K D L Sbjct: 185 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 236 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 +I+CN++ KV+ + RL + + H ++ R V F+ +++++T + Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378 GI+ V V+++D+P IE+Y GR+GR G A+ F AD+A LR Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 356 Query: 379 --EIEKFYSIKINPMPANFAE 397 +++ K+N M A FAE Sbjct: 357 QGQLQDIERHKLNAMGA-FAE 376 >gi|72995|pir||BVECRQ recQ protein - Escherichia coli >gi|148221 (M87049) DNA-dependent ATPase, DNA helicase [Escherichia coli] Length = 610 Score = 79.2 bits (192), Expect = 4e-14 Identities = 86/381 (22%), Positives = 158/381 (40%), Gaps = 47/381 (12%) Query: 40 SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99 ++G++ Q I ++SG+D + +G GK+ + I AL+L+ Sbjct: 22 TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 68 Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151 + S + ++K+ D + N A + +T + L+ M GC+ + P Sbjct: 69 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 126 Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205 R++ + L N +L +DEA + F+ Q+ F LP Sbjct: 127 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 186 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 T +DI+ + +NDP L++ I+ ++ K D L Sbjct: 187 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 238 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 +I+CN++ KV+ + L + + H ++ R V F+ +++++T + Sbjct: 239 KSGIIYCNSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 298 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378 GI+ V V+++D+P IE+Y GR+GR G A+ F AD+A LR Sbjct: 299 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 358 Query: 379 --EIEKFYSIKINPMPANFAE 397 +++ K+N M A FAE Sbjct: 359 QGQLQDIERHKLNAMGA-FAE 378 >gi|147559 (M30198) recQ [Escherichia coli] Length = 610 Score = 79.2 bits (192), Expect = 4e-14 Identities = 86/381 (22%), Positives = 158/381 (40%), Gaps = 47/381 (12%) Query: 40 SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99 ++G++ Q I ++SG+D + +G GK+ + I AL+L+ Sbjct: 22 TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 68 Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151 + S + ++K+ D + N A + +T + L+ M GC+ + P Sbjct: 69 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 126 Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205 R++ + L N +L +DEA + F+ Q+ F LP Sbjct: 127 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 186 Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265 T +DI+ + +NDP L++ I+ ++ K D L Sbjct: 187 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 238 Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325 +I+CN++ KV+ + L + + H ++ R V F+ +++++T + Sbjct: 239 KSGIIYCNSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 298 Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378 GI+ V V+++D+P IE+Y GR+GR G A+ F AD+A LR Sbjct: 299 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 358 Query: 379 --EIEKFYSIKINPMPANFAE 397 +++ K+N M A FAE Sbjct: 359 QGQLQDIERHKLNAMGA-FAE 378 >gi|3776003|emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis thaliana] Length = 451 Score = 78.0 bits (189), Expect = 1e-13 Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 59/308 (19%) Query: 144 QAVSGTPGRVLDMI---KKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP--- 197 + V TPGR+ +++ +K +++ ++ VLDEAD ++ G +++ I LP Sbjct: 1 EIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVER--GHFRELQSILDLLPVTD 58 Query: 198 ---------------------KNCQVVVVSAT--MNKDILEVTRKFMN----------DP 224 K Q V SAT ++ D + ++ + + Sbjct: 59 KPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNS 118 Query: 225 VKILVKR----DEISLEGIKQYVVNVDKEEWKFDTLCD-------IYDSLTIT---QCVI 270 +++L +R D +++ + + K E F C+ +Y L++ + ++ Sbjct: 119 IEVLSERAGMRDNVAIIDLTTTSILAPKIEESF-IKCEEKEKDAYLYYILSVHGQGRTIV 177 Query: 271 FCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGID 330 FC + + +S L V ++ +MKQ R K ++ FR + +LI+TD+ ARGID Sbjct: 178 FCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGID 237 Query: 331 VQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY---SIK 387 ++ V +I+Y LP E Y+HR GR+ R G +I I + +K + K + S+K Sbjct: 238 IKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVK 297 Query: 388 INPMPANF 395 I P+ ++ Sbjct: 298 IFPLDNSY 305 >gi|1931649 (U95973) DNA helicase isolog [Arabidopsis thaliana] Length = 665 Score = 68.7 bits (165), Expect = 6e-11 Identities = 80/373 (21%), Positives = 156/373 (41%), Gaps = 54/373 (14%) Query: 50 QSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQ 109 Q I +SG DV +G GK+ T+ + L + L++SP L S I Sbjct: 129 QREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGI------TLVISP---LVSLIQD 179 Query: 110 VVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ-----AVSGTPGRVL--DMIKKQML 162 + NL N+ A +++ G + LK Q+ + + TP +V D + + + Sbjct: 180 QIMNLLQ-ANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLE 238 Query: 163 QTRNVQML---VLDEADELLSETLGFKQQIYDI------FAKLPKNCQVVVVSATMNKDI 213 + +L V+DEA + F+ + F +P +A++ +D+ Sbjct: 239 NLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDV 298 Query: 214 LE--------VTRKFMNDPVK--ILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263 ++ V R+ N P +V + + LE I +++ +E FD Sbjct: 299 VQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFI-----KENHFD--------- 344 Query: 264 TITQC-VIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 +C +I+C ++ + +S+RL + HG M+ E+R + + ++ +T Sbjct: 345 ---ECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICAT 401 Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 + GI+ V VI++ LP+ IE Y GR+GR G++ + + D +++ + Sbjct: 402 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMIS 461 Query: 383 FYSIKINPMPANF 395 + +PM + Sbjct: 462 QGGVDQSPMATGY 474 >gi|3322364 (AE001194) ATP-dependent DNA helicase, putative [Treponema pallidum] Length = 607 Score = 62.8 bits (150), Expect = 4e-09 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 265 ITQCVIFCNTKKKVDWLSQRL--IQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322 + VIFC + +V+ ++ L S+ + H +++EE++ V F T S VL++T Sbjct: 374 VRPAVIFCARRVQVERVAHHLRTCLSDTQIRFYHAGLQREEKETVERWFHTHDSAVLVTT 433 Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382 W G+D V VI+ D P +E Y+ +GR+GR G + A + D + + Sbjct: 434 CAWGMGVDKPNVRTVIHVDAPLTVEAYVQEVGRAGRDGMRADAFLLWSPRDARSIETLPH 493 Query: 383 FYSIKINPMPANFAE 397 ++ + + +FAE Sbjct: 494 AQRVRAHVL-RHFAE 507 >gi|2621366 (AE000816) ATP-dependent helicase [Methanobacterium thermoautotrophicum] Length = 702 Score = 51.9 bits (122), Expect = 7e-06 Identities = 74/378 (19%), Positives = 162/378 (42%), Gaps = 37/378 (9%) Query: 42 GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI-DLRKKDLQALILSPT 100 G+ + +Q A+ I G+D + A + +GKT I + +I + L +SP Sbjct: 19 GWRSLRDVQKSALEAIGRGEDTLIVAPTASGKTEAALIPVFNSILSEGLPPVSMLYVSPL 78 Query: 101 RELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRV-LDMIKK 159 + L + + ++ G++ N+ G + ++ K+ + TP + + MI + Sbjct: 79 KALINDMHSRLELWGNHFNLEVMK-WHGDVPANRKRRFIKNPSDILLITPESLEVMMINR 137 Query: 160 QMLQTR----NVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV----VVVSATMNK 211 + N++ +++DE + + G Q+ + A+L + V + +SAT+ Sbjct: 138 SRAEKERILGNLRYIIVDEIHQFIEADRGV--QLNSLLARLERYTGVRPQRIGLSATVGN 195 Query: 212 DILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIF 271 E +M+ ++ E L+ + + +N K L ++ T + +IF Sbjct: 196 P--EEVLNWMSPSGAVVRDTAERKLQ-YRIFELNHHK-------LIEVLRRFTGKKVLIF 245 Query: 272 CNTKKKVDWLSQRLIQS-NFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGID 330 +++ + + + + V H + ++ R++ FR+ + +++T GID Sbjct: 246 VPSRRDAEKYYNIIRKCLDVDVFIHHSSINRDSREEAEERFRSVSAAFMVNTSTLELGID 305 Query: 331 VQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV----------AINFITKADLAKLREI 380 V + +VI+ P + ++ R GRSGR R+G+ A+ ++ A LA + Sbjct: 306 VGDIDVVIHIRSPTSVNRFLQRTGRSGR--RRGLQRTIIFQEKEALTALSVASLALSGRL 363 Query: 381 EKFYSIKINPMPANFAEL 398 E I + P+ F ++ Sbjct: 364 EDL-RIPVRPLDIYFHQI 380 >gi|4008108 (AF107116) putative ATP-dependent RNA helicase Ded1p [Candida glabrata] Length = 255 Score = 44.9 bits (104), Expect = 0.001 Identities = 34/122 (27%), Positives = 53/122 (42%), Gaps = 15/122 (12%) Query: 1 MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60 ++FD +D S L LL I F P+ +Q ++ + G Sbjct: 123 INFDNYDDIPVEASGEDVPEAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKG 182 Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDL---------------RKKDLQALILSPTRELAS 105 +D++A AQ+G+GKT F +L L RK A++++PTRELA+ Sbjct: 183 RDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELAT 242 Query: 106 QI 107 QI Sbjct: 243 QI 244 Database: nr Posted date: Mar 13, 1999 7:20 PM Number of letters in database: 110,384,460 Number of sequences in database: 361,503 Lambda K H 0.320 0.136 0.381 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75778410 Number of Sequences: 361503 Number of extensions: 2917609 Number of successful extensions: 9808 Number of sequences better than 1.0e-03: 402 Number of HSP's better than 0.0 without gapping: 341 Number of HSP's successfully gapped in prelim test: 61 Number of HSP's that attempted gapping in prelim test: 8482 Number of HSP's gapped (non-prelim): 461 length of query: 399 length of database: 110384460 effective HSP length: 58 effective length of query: 341 effective length of database: 89417286 effective search space: 30491294526 effective search space used: 30491294526 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.8 bits) S2: 104 (44.9 bits)