proteins
| 6 proteins |
G | COG3281 | Uncharacterized protein, probably involved in trehalose biosynthesis | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Ralstonia solanacearum (Burkholderiales | Betaproteobacteria) | ||||
| RSp0240_2 | ||||
370 letters (r) 0
0 1597 = ||| 1 RSp0240_2 (370) = 146
-12 564 = | 2 PA2152_2 (493) = 157
14
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= RSp0240_2
(370 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
RSp0240_2 619 e-177
PA2152_2 221 1e-57
Rv0127 107 4e-23
MT0135 107 4e-23
Cgl2251 103 7e-22
APE2310 64 6e-10
SPy0378 36 0.17
Cgl0778 32 3.4
VNG6389G 30 10.0
# >RSp0240_2
# Length = 370
#
# Score = 619 bits (1597), Expect = e-177
# Identities = 370/370 (100%), Positives = 370/370 (100%)
#
# Query: 1 LIRRVAAGVHPEVEMTRHLTRIGYANTAALIGEIAHEGADGERSTLAVLQSFVPNQGDAW 60
# LIRRVAAGVHPEVEMTRHLTRIGYANTAALIGEIAHEGADGERSTLAVLQSFVPNQGDAW
# Sbjct: 1 LIRRVAAGVHPEVEMTRHLTRIGYANTAALIGEIAHEGADGERSTLAVLQSFVPNQGDAW 60
#
# Query: 61 TWALDYLRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIGTRLGE 120
# TWALDYLRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIGTRLGE
# Sbjct: 61 TWALDYLRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIGTRLGE 120
#
# Query: 121 LHVALAGPSDDPAFGTRAADADDAAFWTARVDEELARALDHLAAWQAANGPRAEVGWLLS 180
# LHVALAGPSDDPAFGTRAADADDAAFWTARVDEELARALDHLAAWQAANGPRAEVGWLLS
# Sbjct: 121 LHVALAGPSDDPAFGTRAADADDAAFWTARVDEELARALDHLAAWQAANGPRAEVGWLLS 180
#
# Query: 181 QRDALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERRRKT 240
# QRDALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERRRKT
# Sbjct: 181 QRDALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERRRKT 240
#
# Query: 241 SPLRDVAGLVRSLDYVVGAMRQGPEHVAGPAQERRDQLLERFRNASTERFLEAYAAAILA 300
# SPLRDVAGLVRSLDYVVGAMRQGPEHVAGPAQERRDQLLERFRNASTERFLEAYAAAILA
# Sbjct: 241 SPLRDVAGLVRSLDYVVGAMRQGPEHVAGPAQERRDQLLERFRNASTERFLEAYAAAILA 300
#
# Query: 301 SGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARVARRLLPADVAPP 360
# SGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARVARRLLPADVAPP
# Sbjct: 301 SGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARVARRLLPADVAPP 360
#
# Query: 361 VARDPLGGPP 370
# VARDPLGGPP
# Sbjct: 361 VARDPLGGPP 370
#
#
# >PA2152_2
# Length = 493
#
# Score = 221 bits (564), Expect = 1e-57
# Identities = 149/358 (41%), Positives = 204/358 (56%), Gaps = 21/358 (5%)
#
# Query: 1 LIRRVAAGVHPEVEMTRHLTRIGYANTAALIGEIAHEGADGERSTLAVLQSFVPNQGDAW 60
# ++R++ G+HPE+E+ +LTR GY A L+GE+ GADGE TL +LQ ++ NQGDAW
# Sbjct: 147 VLRKILPGLHPEIEVGGYLTRHGYPGIAPLLGEVRRVGADGEPHTLMILQGYLNNQGDAW 206
#
# Query: 61 TWALDYLRRTI-DELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIGTRLG 119
# W LD L R + DE++ +EA+ E + D+ L G+ A +GA RLG
# Sbjct: 207 NWTLDNLERAVRDEISAASEAL-------------EGQYDSLAELRGFAANLGA---RLG 250
#
# Query: 120 ELHVALAGPSDDPAFGTRAADADDAAFWTARVDEELARALDHLA-AWQAANGPRAEVGWL 178
# E+H LAG SDDPAFG+R +D W R+ E+L A L+ + G AE
# Sbjct: 251 EMHSVLAGESDDPAFGSRESDEASVQAWALRIAEQLREAGKRLSEPPRPLQGEAAEQARR 310
#
# Query: 179 LSQR-DALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERR 237
# L +R ALLE A+ G +L RVHGD HLGQVL+ QGDA IDFEGEP+R ++ERR
# Sbjct: 311 LLERLPALLERLPLLARQAAGGLLIRVHGDLHLGQVLMVQGDARFIDFEGEPARSLEERR 370
#
# Query: 238 RKTSPLRDVAGLVRSLDYVVGAMRQGPEHVAGPAQ--ERRDQLLERFRNASTERFLEAYA 295
# ++ SP++DV G++RS DY + + + Q R ++ R+R+ + + FL Y
# Sbjct: 371 QRHSPMKDVGGMLRSFDYAAAMVLRNAQSTDSSEQADSARRKVAMRYRSEARDAFLAGYR 430
#
# Query: 296 AAILASGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARVARRLL 353
# AA + L L LEKAAYE+ YEA RP WL +PLAGLA + LL
# Sbjct: 431 AAAAGLMHAWHGREGEGAALALACLEKAAYELLYEADYRPDWLEVPLAGLAELTEHLL 488
#
#
# >Rv0127
# Length = 455
#
# Score = 107 bits (268), Expect = 4e-23
# Identities = 114/356 (32%), Positives = 154/356 (43%), Gaps = 69/356 (19%)
#
# Query: 1 LIRRVAAGVHPEVEMTRHLTRIGYANTAALIGEIA-----HEGADGERSTLAVLQSFVPN 55
# + RRV++G++P++E+ R LTR G + A L+G D L ++ + N
# Sbjct: 158 VFRRVSSGINPDIELNRVLTRAGNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEAN 217
#
# Query: 56 QGDAWTWALDYLRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIG 115
# + W A +R E + V GD A + +G
# Sbjct: 218 AAEGWAMATASVRDLFAEGDLYAHEVG---GDFAGESYR-------------------LG 255
#
# Query: 116 TRLGELHVALAGPSDDPAFGTRAADADDAAFWTARVDEELARALDHLAAWQAANGPRAEV 175
# + +H LA + GT A T VD LAR L++ A E
# Sbjct: 256 EAVASVHATLAD-----SLGTAQA--------TFPVDRMLAR----LSSTVAVVPELREY 298
#
# Query: 176 GWLLSQRDALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDE 235
# + Q+ L A Q RVHGD HLGQVL LIDFEGEP +P+DE
# Sbjct: 299 APTIEQQFQKLAAEAITVQ--------RVHGDLHLGQVLRTPESWLLIDFEGEPGQPLDE 350
#
# Query: 236 RRRKTSPLRDVAGLVRSLDYVVGAMRQGP---EHVAGPAQERRDQLLERFRNASTERFLE 292
# RR SPLRDVAG++RS +Y GP + R + +ER R A F +
# Sbjct: 351 RRAPDSPLRDVAGVLRSFEYAA----YGPLVDQATDKQLAARAREWVERNRAA----FCD 402
#
# Query: 293 AYAAAILASGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARV 348
# YA +ASG D L LL + L+KA YE YE +RP WLPIPL +AR+
# Sbjct: 403 GYA---VASGIDPRDSAL---LLGAYELDKAVYETGYETRHRPGWLPIPLRSIARL 452
#
#
# >MT0135
# Length = 455
#
# Score = 107 bits (267), Expect = 4e-23
# Identities = 114/356 (32%), Positives = 154/356 (43%), Gaps = 69/356 (19%)
#
# Query: 1 LIRRVAAGVHPEVEMTRHLTRIGYANTAALIGEIA-----HEGADGERSTLAVLQSFVPN 55
# + RRV++G++P++E+ R LTR G + A L+G D L ++ + N
# Sbjct: 158 VFRRVSSGINPDIELNRVLTRAGNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEAN 217
#
# Query: 56 QGDAWTWALDYLRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIG 115
# + W A +R E + V GD A + +G
# Sbjct: 218 AAEGWAMATASVRDLFAEGDLYAHEVG---GDFAGESYR-------------------LG 255
#
# Query: 116 TRLGELHVALAGPSDDPAFGTRAADADDAAFWTARVDEELARALDHLAAWQAANGPRAEV 175
# + +H LA + GT A T VD LAR L++ A E
# Sbjct: 256 EAVASVHATLAD-----SLGTAQA--------TFPVDRMLAR----LSSTVAVVPELREY 298
#
# Query: 176 GWLLSQRDALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDE 235
# + Q+ L A Q RVHGD HLGQVL LIDFEGEP +P+DE
# Sbjct: 299 APTIEQQFQKLAAEAITVQ--------RVHGDLHLGQVLRTPESWLLIDFEGEPGQPLDE 350
#
# Query: 236 RRRKTSPLRDVAGLVRSLDYVVGAMRQGP---EHVAGPAQERRDQLLERFRNASTERFLE 292
# RR SPLRDVAG++RS +Y GP + R + +ER R A F +
# Sbjct: 351 RRAPDSPLRDVAGVLRSFEYAA----YGPLVDQATDKQLAARAREWVERNRAA----FCD 402
#
# Query: 293 AYAAAILASGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARV 348
# YA +ASG D L LL + L+KA YE YE +RP WLPIPL +AR+
# Sbjct: 403 GYA---VASGIDPRDSAL---LLGAYELDKAVYETGYETRHRPGWLPIPLRSIARL 452
#
#
# >Cgl2251
# Length = 363
#
# Score = 103 bits (257), Expect = 7e-22
# Identities = 102/348 (29%), Positives = 156/348 (44%), Gaps = 96/348 (27%)
#
# Query: 3 RRVAAGVHPEVEMTRHLTRIGYANTAALIGEIAHEGADGERSTLAVLQSFVPNQGDAWTW 62
# R++ +G +P+VE+ ++ N A ++G + E G TL + Q +VP D W+
# Sbjct: 108 RKLESGQNPDVELISKISSC--PNIAPILGFSSAE-ISGANYTLVMAQQYVPGL-DGWSH 163
#
# Query: 63 ALDYLRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIGTRLGELH 122
# AL T A D + IG +H
# Sbjct: 164 AL-----------TTTSGSFAEDAE-------------------------KIGEATRNVH 187
#
# Query: 123 VALAGPSDDPAFGTRAADADDAA-FWTARVDEELARALDHLAAWQAANGPRAEVGWLLSQ 181
# ALA AF TR + A T R++E +++A + +A ++
# Sbjct: 188 TALAS-----AFPTRVVPVEALADALTTRLNELISQAPE-IARFK--------------- 226
#
# Query: 182 RDALLEAARERAQGGLG-AMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERRRKT 240
# EAA + Q G A + R+HGD HLGQ++ LIDFEGEP+RP+++RR
# Sbjct: 227 -----EAAIDLYQSLEGEAHIQRIHGDLHLGQLIKTPERYILIDFEGEPARPLNQRRLPD 281
#
# Query: 241 SPLRDVAGLVRSLDYVVGAMRQGPEHVAGPAQERRDQLLERFRNASTERFLEAYAAAILA 300
# SPL+D+AG++RS+DY A G EH ++ N +T FL+ Y +
# Sbjct: 282 SPLKDLAGIIRSIDY--AAYFDG-EHT-------------QWANEATALFLDGYGS---- 321
#
# Query: 301 SGSDDGACMLDLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARV 348
# + D +LL+ ++L+KA YEV YE NRP W+ IPL + R+
# Sbjct: 322 --------IEDQELLNAYILDKALYEVAYEINNRPDWVKIPLEAVERL 361
#
#
# >APE2310
# Length = 365
#
# Score = 63.9 bits (154), Expect = 6e-10
# Identities = 79/267 (29%), Positives = 117/267 (43%), Gaps = 25/267 (9%)
#
# Query: 88 AAPTAVSEARTDTDEALAGYLAFIGAIGTRLGELHVALAGPSDDPAFGTRAADADDAAFW 147
# AA + A+ +A + GA+G + +H ALA + +A W
# Sbjct: 102 AATLFIEAAKQSLKTGVATVPSEAGALGVAVAAIHSALASCRESWCMPEEPTEA-MVERW 160
#
# Query: 148 TARVD------EELARALDHLAAWQAANGPRAEVGWLLSQRDALLEAARERAQGGLGAML 201
# +R+ E+LAR L P E + AL + + +G LG +
# Sbjct: 161 MSRLAIRASMIEDLARGL-----------PADEARIVYDAASALRQLHQREWRGLLGGVA 209
#
# Query: 202 ARVHGDFHLGQVLVAQ-GDAYLIDFEGEPSRPVDERRRKTSPLRDVAGLVRSLDY--VVG 258
# + HGD HL QVLV++ G + DFEGEPSR K P RD+A L+RSLDY V+
# Sbjct: 210 MQTHGDLHLYQVLVSRSGRIVVTDFEGEPSRQPAGAMEKEHPERDLAALLRSLDYASVLA 269
#
# Query: 259 AMRQGPEHVAGPAQERRDQLLERFRNASTERFLEAYAAAILASGSDDGACMLDLDLLDLF 318
# A G V + R +L R ++ R +EA L+ G + + L +
# Sbjct: 270 AQALGGRTVESAIETARGEL--RGWVEASYRIVEASYVDTLSRAGLPGE--VSRERLAFW 325
#
# Query: 319 LLEKAAYEVNYEAANRPTWLPIPLAGL 345
# L+E+A+YE+ YE R + IP L
# Sbjct: 326 LVERASYEIVYELKYRTGYHLIPATAL 352
#
#
# >SPy0378
# Length = 444
#
# Score = 35.8 bits (81), Expect = 0.17
# Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 19/107 (17%)
#
# Query: 172 RAEVGWLLSQRDALLEAAR-ERAQG--GLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGE 228
# R E+ ++LS+ +A L+A E QG L M+AR +V+V + DA++ID +
# Sbjct: 183 RDEIEYMLSKSEATLDAEEIEMLQGVFSLDEMMAR--------EVMVPRTDAFMIDINDD 234
#
# Query: 229 PSRPVDERRRKT---SPLRDV-----AGLVRSLDYVVGAMRQGPEHV 267
# P + E +++ P+ DV GL+ + + RQG + +
# Sbjct: 235 PLENIQEILKQSFSRIPVYDVDKDKIIGLIHTKRLLESGFRQGFDQI 281
#
#
# >Cgl0778
# Length = 368
#
# Score = 31.6 bits (70), Expect = 3.4
# Identities = 45/183 (24%), Positives = 74/183 (39%), Gaps = 40/183 (21%)
#
# Query: 67 LRRTIDELAVLTEAVSAGDGDAAPTAVSEARTDTDEALAGYLAFIGAIGTRLGELHVALA 126
# LR+ I++L ++ E DGD T+++E E LA + I A+ E+ L+
# Sbjct: 71 LRQRIEDLPIMVELAEEEDGD---TSIAE------EELADLRSLIDAL-----EVKTMLS 116
#
# Query: 127 GPSD--DPAFGTRA-ADADDAAFWTARVDEELARALDHLAAWQAANGPRAEVGWLLSQRD 183
# G D + R+ A DAA W + R W NG + ++ + +
# Sbjct: 117 GEYDAREAVINIRSGAGGVDAADWAEMLMRMYTR-------WAEKNGHKVDIYDISYAEE 169
#
# Query: 184 ALLEAARERAQGGLGAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERRRKTSPL 243
# A G+ + VHGD+ GQ+ V QG L+ P D + R+ +
# Sbjct: 170 A-----------GIKSATFVVHGDYMYGQLSVEQGAHRLVRIS-----PFDNQGRRQTSF 213
#
# Query: 244 RDV 246
# +V
# Sbjct: 214 AEV 216
#
#
# >VNG6389G
# Length = 307
#
# Score = 30.0 bits (66), Expect = 10.0
# Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
#
# Query: 198 GAMLARVHGDFHLGQVLVAQGDAYLIDFEGEPSRPVDERRRKTSPLRDVAGLVRSLDYVV 257
# GA L D L V+ + DA E R + RR+ S R + R+L + +
# Sbjct: 69 GAPLTPARHDRGLSTVIGSGQDARGTALSSEKRRRLARMRREQSRGRWRSTKERNLGHGL 128
#
# Query: 258 GAMRQGPEHVAGPAQERRDQLLERFRNASTERFLEAYAAAILASGSDDGAC-------ML 310
# +R+ + G A RDQ + FR A ER L+ + +A+ S GAC ++
# Sbjct: 129 TEIRRIASAL-GLADSVRDQACQLFRTAQNERLLKGRSIEAMAAASVFGACRCNGESWLI 187
#
# Query: 311 DLDLLDLFLLEKAAYEVNYEAANRPTWLPIPLAGLARVARRL 352
# D D+ + + + E Y N LP P L + RL
# Sbjct: 188 D-DVAPMAQVGQNRVENAYTVLNEELGLPTPPVSLDQFVPRL 228
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,731,082
Number of Sequences: 192987
Number of extensions: 1865824
Number of successful extensions: 5615
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 5584
Number of HSP's gapped (non-prelim): 50
length of query: 370
length of database: 59,019,183
effective HSP length: 111
effective length of query: 259
effective length of database: 37,597,626
effective search space: 9737785134
effective search space used: 9737785134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
S2: 66 (30.0 bits)