Reference SNP(refSNP) Cluster Report: rs33388032

Reference SNP(refSNP) Cluster Report: rs33388032

refSNP ID: rs33388032
Organism:	mouse (Mus musculus)
Molecule Type:	Genomic
Created/Updated in build:	125/128
Map to Genome Build:	37.1

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Strain:	not submitted
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss39529714 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs33388032 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss39529714	ABI\|mCV23316974		fwd/B	C/T	accccagaaaatcagactggataacctcgc	cgcccgttcagattctttcatcttctcctc	07/16/05	12/22/05	125	Genomic			unknown
ss56325630	ENSEMBL\|NT_039649.5_10728510		fwd/B	C/T	accccagaaaatcagactggataacctcgc	cgcccgttcagattctttcatcttctcctc	06/11/06	06/11/06	127	Genomic			unknown

Fasta sequence (Legend)

 CCGCAAAGTC CTAGCTGAGT TAGCCAGCCC CCCCCCCCCC CAGGACAGTG TCCCGTTCTT
 CTTCAGAATT CTGTTTTACT TCTGGGTCCA TCAGCTTTTA TTTCCTGGGG CTCTCATTTC
 TCTTTACTGC TCACCCACGG ACTCCTAGTG CTGAGCTGGA CCGGGCGGCA GCCCCTCCCT
 CTCCGCACCC CAAGGCAGCA GCAACTGCAT CTTGGAGTCC TTCTCTTCCT CGCTGAGGCT
 GGAGGAAGCG CGGTAGCGCC GCGGGTGGGG ACCCCAGAAA ATCAGACTGG ATAACCTCGC
 Y
 CGCCCGTTCA GATTCTTTCA TCTTCTCCTC AGCGGCACAC GCCGGGATAA TCTCAATGAA
 ATGGATAGGA TTAGCCAGTA AATCTCTTCC ATTCAGGGAG GGCCCGGTGT GTGACGTCAG
 CAGTTCCTGG GCAGATAATG TCCATAAAGG TTGCAAAGAA GAGGTGGGGT TGAGGATTCA
 AGGAAGGAGC GCGCAGCCCT GACTTGCGCG ACGTGAGCAG CCCCGGGCAA GGGCGCGTCC
 TCGTGGGTGG CTCAGGGTAG TGAGACTGTT GAACCAAGAG GGGCCCTAGG AGGGACACAT

GeneView

GeneView via analysis of contig annotation: Psmb8 proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

Celera

NW_001030615->NM_010724

function

C57BL/6J

NT_039649->NM_010724

function

129/SvJ

NT_039662->NM_010724

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


Celera	NW_001030615->NM_010724->NP_034854	918135	forward	5' near gene

C57BL/6J	NT_039649->NM_010724->NP_034854	20528280	forward	5' near gene

129/SvJ	NT_039662->NM_010724->NP_034854	446473	forward	5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs33388032 maps exactly once on NCBI mouse chromosome 17

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
17	NT_039649.7	20528280	34334494	plus	C	ref_strain	C57BL/6J	C57BL/6J	view	300
17	NT_039662.2	446473	34334664	plus	C	alt_strain_16	129/SvJ	129/SvJ	view	300
17	NW_001030615.1	918135	36951135	plus	C	alt_assembly_1	Celera	Celera	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_039649.5

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
CR974422.14	AC171918.1 CU467495.1 CU467496.1

Population Diversity

	Sample Ascertainment				Genotype Detail
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	T/T
ss39529714	CRAMUS_MOUSE		8	IG	3	1

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	-1.000+/-0	4	4	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .