|
Abstracts of these publications can be accessed through Berkeley Lab's searchable report database. If there is no link to the full text of the report you need, there are several ways of obtaining the document:
You can also view the publications below sorted by date.
M. Abdalla, E. Bresson, O. Chevassut, and D. Pointcheval (2006). Password-based Group Key Exchange in a Constant Number of Rounds. In International Workshop on Practice and Theory in Public Key Cryptography (PKC), New York, U.S.A. LBNL-59542.
M. Abdalla, O. Chevassut, P.-A. Fouque, and D. Pointcheval (2005). A Simple Threshold Authenticated Key Exchange from Short Secrets. In Asiacrypt, Chennai, India. LBNL-58175.
M. Abdalla, O. Chevassut, and D. Pointcheval (2004). One-time verifier-based encrypted key exchange. In 8th International Workshop on Practice and Theory in Public Key Cryptography (PKC), Les Diablerets, Switzerland. LBNL-56212.
M. Abdalla, B. Emmanuel, O. Chevassut, B. Moeller, and D. Pointcheval (2005). Provably Secure Password-based Authentication in TLS. In ACM Symposium on Information, Computer and Communications Security, Taipei, Taiwan. LBNL-57609 Ext. Abs. http://www-library.lbl.gov/docs/LBNL/576/09/PDF/LBNL-57609.pdf
M. Ackermann and A. Collaboration (2004). Amanda: status and latest results. In 39th Rencontres de Moriond on Electroweak Interactions and Unified Theories, La Thuile, Aosta Valley, Italy. LBNL-55611.
A. Adelmann, R. D. Ryne, J. M. Shalf, and C. Siegerist (2005). From Visualisation to Data Mining with Large Data Sets. In Particle Accelerator Conference 2005, Knoxville, Tennessee. LBNL-57603. http://www-library.lbl.gov/docs/LBNL/576/03/PDF/LBNL-57603.pdf
A. Adelmann, R. D. Ryne, C. Siegerist, and J. M. Shalf (2005). H5Part: A Portable High Performance Parallel Data Interface for Particle Simulations. In Particle Accelerator Conference, edited by C. Horak, IEEE, Knoxville, TN. LBNL-57607 Ext. Abs. http://www-library.lbl.gov/docs/LBNL/576/07/PDF/LBNL-57607_Ext_Abs.pdf
U. Adiga, A. Idica, R. F. Gonzalez, and C. Ortiz de Solorzano (2005). An efficient approach to segmentation of cell-nuclei in tissue images: application to breast tissue blocks. TO BE SUBMITTED FOR PUBLICATION. LBNL-54477.
U. Adiga, R. Malladi, R. Gonzalez, and C. Ortiz de Solorzano (2006). A robust methodology for the analysis of multi-spectral images of breast cancer tissue blocks. to be submitted for publication. LBNL-60272.
D. Agarwal, J. M. Gonzalez, B. Tierney, and G. Jin (2003). An infrastructure for passive network monitoring of application data streams. In 2003 Passive and Active Measurement Workshop, San Diego, CA. U.S.A. LBNL-51846. http://www-library.lbl.gov/docs/LBNL/518/46/PDF/LBNL-51846.pdf
D. Agarwal, M. Lorch, M. Thompson, and M. Perry (2003). A new security model for collaborative environments. In Workshop on Advanced Collaborative Environments, ANL, Seattle, WA. LBNL-52894. http://www-library.lbl.gov/docs/LBNL/528/94/PDF/LBNL-52894.pdf
D. Agarwal, G. Olson, and J. Olson (2002). Collaboration tools for the global accelerator network: Workshop Report. LBNL-53253. http://www-library.lbl.gov/docs/LBNL/532/53/PDF/LBNL-53253.pdf
D. A. Agarwal and K. Berket (2003). Supporting Dynamic Ad hoc Collaboration Capabilities. In 2003 Conference for Computing in High Energy and Nuclear Physics, La Jolla, CA. LBNL-53355. http://www-library.lbl.gov/docs/LBNL/533/55/PDF/LBNL-53355.pdf
P. K. Agarwal, R. A. Alexander, E. Apra, S. Balay, A. S. Bland, J. Colgan, E. F. D'Azevedo, J. J. Dongarra, T. H. Dunigan Jr., M. R. Fahey, R. A. Fahey, A. Geist, M. Gordon, R. J. Harrison, D. Kaushik, M. Krishnakumar, P. Luszczek, A. Mezzacappa, J. A. Nichols, J. Nieplocha, L. Oliker, T. Packwood, M. S. Pindzola, T. C. Schulthess, J. S. Vetter, J. B. White III, T. L. Windus, P. H. Worley, T. Zacharia, and T. Zacharia (2004). ORNL Cray X1 evaluation status report. In 46th Cray User Group Conference, Knoxville, TN. LBNL-55302. http://www-library.lbl.gov/docs/LBNL/553/02/PDF/LBNL-55302.pdf
J. Ahrens and I. Collaboration (2004). Status of the icecube neutrino observatory. In 2nd VERITAS Symposium on TeV Astrophysics of Extragalactic Sources, Chicago, 48. LBNL-55612.
G. Allen, K. Davis, K. N. Dolkas, N. D. Doulamis, T. Goodale, T. Kielmann, A. Merzky, J. Nabrzyski, J. Pukacki, T. Radke, M. Russell, E. Seidel, J. Shalf, and I. Taylor (2003). Enabling applications on the Grid - A Gridlab overview. International Journal on High Performance Computing Applications 17 (4). LBNL-54107.
A. S. Almgren, J. B. Bell, C. A. Rendleman, and M. Zingale (2005). Low Mach Number Modeling of Type Ia Supernovae. Astrophysical Journal 637, 922-36. LBNL-58673. http://www-library.lbl.gov/docs/LBNL/586/73/PDF/LBNL-58673.pdf
A. S. Almgren, J. B. Bell, C. A. Rendleman, and M. Zingale (2006). Low Mach Number Modeling of Type Ia Supernovae. II. Energy Evolution. Astrophysical Journal. LBNL-58673 Pt.II.
P. Amestoy, X. S. Li, and S. Pralet (2005). Unsymmetric ordering using a constrained Markowitz scheme. SIAM J. Matrix Analysis and Applications. LBNL-56861.
P. R. Amestoy, X. S. Li, and E. G. Eg (2003). Diagonal Markowitz scheme with local symmetrization. SIAM J. Matrix Anal. Appl. LBNL-53854.
Z. Bai and C. Yang (2006). From Self-consistency to SOAR: Solving Large-scale Nonlinear Eigenvalue Problem. SIAM News (April). LBNL-60645.
D. H. Bailey and J. M. Borwein (2005). Future Prospects for Computer-Assisted Mathematics. Notices of the Canadian Mathematical Society 37 (8), 2-6. LBNL-59060. http://www-library.lbl.gov/docs/LBNL/590/60/PDF/LBNL-59060.pdf
D. H. Bailey, J. M. Borwein, and D. M. Bradley (2005). Experimental Determination of Apery-Like Identities for Zeta(2n+2). Experimental Mathematics. LBNL-57581.
M. Barad and P. Colella (2004). A fourth order accurate adaptive mesh refinement method for poisson's equation. Journal of Computational Physics 209 (1), 1-18. LBNL-56190. http://www-library.lbl.gov/docs/LBNL/561/90/PDF/LBNL-56190.pdf
G. I. Barenblatt (2005). Applied mechanics: An age-old science perpetually in rebirth. In ASME International Mechanical Engineering Congress, Orlando, FL. LBNL-58874.
G. I. Barenblatt, M. Bertsch, and L. Giacomelli (2006). Stead and quasi-steady thin viscous flows near the edge of a solid surface. to be submitted for publication. LBNL-60275.
G. I. Barenblatt and A. J. Chorin (2005). A mathematical model for the scaling of turbulence. Proceedings of the National Academy of Sciences 101 (42), 15023-15026. LBNL-57904.
G. I. Barenblatt, A. J. Chorin, and V. M. Prostokishin (2005). A note concerning the Lighthill "sandwich model" of tropical cyclones. In ASME International Mechanical Engineering Congress, Orlando, FL. LBNL-57842 Conf.
B. E. Bargmeyer (2006). Common sense, common logic. ISO Focus 3 (3), 24-26. LBNL-59983.
E. Baron, P. E. Nugent, D. Branch, and P. H. Hauschildt (2004). Type IIP supernovae as cosmological probes: A SEAM distance to SN 1999em. Astrophysical Journal 616, 91. LBNL-56193. http://www-library.lbl.gov/docs/LBNL/561/93/PDF/LBNL-56193.pdf | http://www-library.lbl.gov/docs/LBNL/561/93/PS/LBNL-56193.ps
F. Bartolome, J. Herrero-Albillos, L. Garcia, A. Young, T. Funk, and E. Arenholz (2005). Antiferromagnetic arrangement in paramagnetic ErCo2. In 50th Annual Conference on Magnetism and Magnetic Materials, San Jose, California, USA. LBNL-58515 Abs. http://www-library.lbl.gov/docs/LBNL/585/15/PDF/LBNL-58515_Abs.pdf
J. M. Bashor (2004). CRD report, January 2004. LBNL/PUB-896 (Jan. 2004). http://www-library.lbl.gov/docs/PUB/896/PDF/PUB-896_(Jan._2004).pdf
C. Bell, D. Bonachea, Y. Cote, J. Duell, P. Hargrove, P. Husbands, C. Iancu, M. Welcome, and K. Yelick (2003). An evaluation of current high-performance networks. In 17th International Parallel and Distributed Processing Symposium (IPDPS), 2003, Nice, France. LBNL-52103. http://www-library.lbl.gov/docs/LBNL/521/03/PDF/LBNL-52103.pdf
C. Bell, D. Bonachea, R. Nishtala, and K. Yelick (2005). Optimizing Bandwidth Limited Problems Using One-Sided Communication and Overlap. In IPDPS 2006, Rhodes Island, Greece. LBNL-59207. http://www-library.lbl.gov/docs/LBNL/592/07/PDF/LBNL-59207.pdf
J. B. Bell (2004). AMR for low Mach number reacting flow. In Chicago Workshop on Adaptive Mesh Refinement Methods, Springer Verlag, Chicago, Illinois. LBNL-54351. http://www-library.lbl.gov/docs/LBNL/543/51/PDF/LBNL-54351.pdf
J. B. Bell, M. Day, V. Beckner, C. Rendleman, A. L. Kuhl, and P. Neuwald (2005). Numerical Simulation of Shock-Dispersed Fuel Charges. In HPCMP Users Group Conference 2005, IEEE, Nashville, TN. LBNL-58707. http://www-library.lbl.gov/docs/LBNL/587/07/PDF/LBNL-58707.pdf
J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2003). Analysis of carbon chemistry in numerical simulations of vortex flame interaction. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. LBNL-52168. http://www-library.lbl.gov/docs/LBNL/521/68/PDF/LBNL-52168.pdf
J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Stochastic algorithms for the analysis of numerical flame simulations. Journal of Computational Physics 202 (1), 262-80. LBNL-49326 Journal. http://www-library.lbl.gov/docs/LBNL/493/26/PDF/LBNL-49326_Journal.pdf
J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Active control for turbulent premixed flame simulations. In Western States Section of the Combustion Institute 2004 Spring Meeting, Davis, CA. LBNL-54766. http://www-library.lbl.gov/docs/LBNL/547/66/PDF/LBNL-54766.pdf
J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2005). Active Control for Statistically Stationary Premixed Flame Simulations. Communications in Applied Mathematics and Computational Science. LBNL-58751.
J. B. Bell, M. S. Day, J. F. Grcar, M. J. Lijewski, M. R. Johnson, R. K. Cheng, and I. G. Shepherd (2003). Numerical simulation of a premixed turbulent V-flame. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Institute of Dynamics of Explosions and Reactive Systems, Seattle, U.S, Hakone, Kanagawa, Japan. LBNL-52166. http://www-library.lbl.gov/docs/LBNL/521/66/PDF/LBNL-52166.pdf
J. B. Bell, M. S. Day, and A. Kuhl (2003). Numerical simulations of shock-induced mixing and combustion. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. LBNL-52167. http://www-library.lbl.gov/docs/LBNL/521/67/PDF/LBNL-52167.pdf
J. B. Bell, M. S. Day, C. A. Rendleman, S. E. Woosley, and M. Zingale (2003). Direct numerical simulations of type Ia supernovae flames I: The landau-darrieus instability. Astrophysical Journal. LBNL-54088.
J. B. Bell, M. S. Day, C. A. Rendleman, S. E. Woosley, and M. Zingale (2004). Direct numerical simulations of type Ia supernovae flames II: The rayleigh-taylor instability. Astrophysical Journal 608 (pt.1), 883-906. LBNL-54300. http://www-library.lbl.gov/docs/LBNL/543/00/PDF/LBNL-54300.pdf
J. B. Bell, M. S. Day, C. A. Rendleman, S. E. Woosley, and M. A. Zingale (2003). Adaptive low Mach number simulations of nuclear flame microphysics. Journal of Computational Physics. LBNL-52395.
J. B. Bell, M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, V. E. Beckner, M. J. Lijewski, and J. F. Grcar (2003). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the Combustion Institute. LBNL-54198.
J. B. Bell, M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, J. F. Grcar, V. E. Beckner, and M. J. Lijewski (2005). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the National Academy of Sciences 102 (29), 10006-11. LBNL-54198 Journal. http://www-library.lbl.gov/docs/LBNL/541/98/PDF/LBNL-54198_Journal.pdf
K. Berket and D. Agarwal (2003). Enabling secure Ad-hoc collaboration. In Workshop on Advanced Collaborative Environments, Seattle, WA. LBNL-52895.
K. Berket, A. Essiari, D. Gunter, and W. Hoschek (2004). Peer-to-peer I/O (P2PIO) protocol specification Version 0.6. LBNL-56402 V.6. http://www-library.lbl.gov/docs/LBNL/564/02/PDF/LBNL-56402_v6.pdf
K. Berket, A. Essiari, and A. Muratas (2004). PKI-based security for peer-to-peer information sharing. In The Fourth IEEE International Conference on Peer-to-Peer Computing, IEEE, Zurich, Switzerland. LBNL-54975.
K. Berket, A. Essiari, and M. R. Thompson (2005). Securing Resources in Collaborative Environments: A Peer-to-peer Approach. In The 17th IASTED International Conference on PARALLEL AND DISTRIBUTED COMPUTING AND SYSTEMS, Phoenix, AZ. LBNL-58867. http://www-library.lbl.gov/docs/LBNL/588/67/PDF/LBNL-58867.pdf
E. W. Bethel (2003). Interoperability of Visualization Software and Data Models is Not an Achievable Goal. In IEEE Visaulization 2003, Seattle, WA. LBNL-53368 Abs. http://www-library.lbl.gov/docs/LBNL/533/68/PDF/LBNL-53368_Abs.pdf
E. W. Bethel (2004). Infrastructure for Scalable and Interoperable Visualization and Analysis Software Technology. LBNL/PUB-5510. http://www-library.lbl.gov/docs/PUB/5510/PDF/PUB-5510.pdf
E. W. Bethel, R. Frank, S. Fulcomer, C. Hansen, K. Joy, J. Kohl, and D. Middleton (2003). Visual Data Exploration and Analysis - Report on the Visualization Breakout Session of the SCaLeS Workshop. LBNL/PUB-886. http://www-library.lbl.gov/docs/PUB/886/PDF/PUB-886.pdf
E. W. Bethel, G. Humphreys, B. Paul, and J. D. Brederson (2003). Sort-First, Distributed Memory Parallel Visualization and Rendering. In 2003 Symposium on Parallel Visualization and Graphics, IEEE Visualization, Seattle, WA. LBNL-52998. http://www-library.lbl.gov/docs/LBNL/529/98/PDF/LBNL-52998.pdf
E. W. Bethel, C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies. In SciDAC 2006 Conference, edited by unknown, Institute of Physics Publishing, Denver, CO, unknown. LBNL-60413.
E. W. Bethel, C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). Meet the Proposed Visualization and Analytics Center for Enabling Technologies. LBNL-60478 Poster. http://www-library.lbl.gov/docs/LBNL/604/78/PDF/LBNL-60478_Poster.pdf
E. W. Bethel, J. Shalf, and C. Siegerist (2004). Remote and distributed high performance scientific visualization - Terabytes to insights. LBNL/PUB-912. http://www-library.lbl.gov/docs/PUB/912/PDF/PUB-912.pdf
E. W. Bethel and J. M. Shalf (2005). Algorithms, Frameworks and Toolsets for High Performance, Remote and Distributed Visualization. LBNL-58171. http://www-library.lbl.gov/docs/LBNL/581/71/PDF/LBNL-58171.pdf
W. Bethel and J. Shalf (2003). Consuming Network Bandwidth with Visapult. In Visualization Handbook, edited by C. J. a. C. Hansen, Academic Press, Vol. N/A, p. LBNL-52171. http://www-library.lbl.gov/docs/LBNL/521/71/PDF/LBNL-52171.pdf
W. Bethel, C. Siegerist, J. Shalf, P. Shetty, T. J. Jankun-Kelly, O. Kreylos, and K.-L. Ma (2003). VisPortal: Deploying grid-enabled visualization tools through a web-portal interface. In Workshop on Advanced Collaborative Environments ( http://www-unix.mcs.anl.gov/fl/events/wace2003/), edited by G. C. A. Johnson, WACE, Seattle Washington. LBNL-52940. http://www-library.lbl.gov/docs/LBNL/529/40/PDF/LBNL-52940.pdf
R. Biswas, L. Oliker, and H. Shan (2003). Parallel computing strategies for irregular algorithms. In Annual review of scalable computing, edited by Y. C. Kwong, Singapore University Press, World Scientific, Vol. 5, p. LBNL-53115. http://www-library.lbl.gov/docs/LBNL/531/15/PDF/LBNL-53115.pdf
D. Bonachea (2004). Proposal for extending the UPC memory copy library functions and suppo rting extensions to GASNet, Version 1.0. LBNL-56495. http://www-library.lbl.gov/docs/LBNL/564/95/PDF/LBNL-56495.pdf
J. Borrill, J. Carter, L. Oliker, D. Skinner, and R. Biswas (2005). Integrated Performance Monitoring of a Cosmology Application on Leading HEC Platforms. In THE 2005 INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING (ICPP-05), edited by L. N. Olav Lynse, IEEE Computer Society, Univ. of Oslo, Norway, 00. LBNL-58001. http://www-library.lbl.gov/docs/LBNL/580/01/PDF/LBNL-58001.pdf
I. Bowman, J. Shalf, K.-L. Ma, and W. Bethel (2004). Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment. LBNL-56977. http://www-library.lbl.gov/docs/LBNL/569/77/PDF/LBNL-56977.pdf
V. Brady, P. Concus, and R. Finn (2004). Computational investigation of unusual behavior in certain capillary tubes. Microgravity Science and Technology XV (4), 31-38. LBNL-54723. http://www-library.lbl.gov/docs/LBNL/547/23/PDF/LBNL-54723.pdf
E. Bresson, O. Chevassut, and D. Pointcheval (2003). Security Proofs for an efficient password-based key exchange. In 10th ACM Conference on Computer and Communications Security (ACM CCS'03), Washington DC. LBNL-51868.
E. Bresson, O. Chevassut, and D. Pointcheval (2003). New Security Results on Encrypted Key Exchange. In International Workshop on Practice and Theory in Public Key Cryptographyc (PKC), Singapore. LBNL-53099. http://www-library.lbl.gov/docs/LBNL/530/99/PDF/LBNL-53099.pdf | http://www-library.lbl.gov/docs/LBNL/530/99/PS/LBNL-53099.ps
J. R. Burruss, T. W. Fredian, and M. R. Thompson (2005). Security on the US Fusion Grid. In Fifth International Atomic Energy Agency (IAEA) Technical Meeting onControl, Data Acquisition, and Remote Participation for Fusion Research, Budapest, Hungary. LBNL-58693. http://www-library.lbl.gov/docs/LBNL/586/93/PDF/LBNL-58693.pdf
J. R. Burruss, T. W. Fredian, and M. R. Thompson (2005). Simplifying fusiongrid security. In Challenges of Large Applications in Distributed Environments (CLADE) at HPDC 14, edited by A. Sussman, IEEE, Research Triangle Park, N. C. LBNL-58691. http://www-library.lbl.gov/docs/LBNL/586/91/PDF/LBNL-58691.pdf
G. F. Butler, R. C. Lee, and M. L. Welcome (2003). The global unified parallel file system (GUPFS) project: FY 2002 activities and results. LBNL-52456. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456.pdf
J. Carter and L. Oliker (2006). Performance Evaluation of Lattice-Boltzmann Magnetohydrodynamics Simulations on Modern Parallel Vector Systems. In 2nd Teraflop Workshop, edited by M. Resch, Springer, Stuttgart, Germany. LBNL-59340. http://www-library.lbl.gov/docs/LBNL/593/40/PDF/LBNL-59340.pdf
J. Carter, L. Oliker, and J. Shalf (2005). Performance Evaluation of Plasma Physics and Astrophysics Applications on Modern Parallel Vector Systems. In VECPAR'06 7th International Conference on High Performance Computing for Computational Science, edited by J. D. M. Daydé, V. Hernandez and J.M.L.M. Palma, Springer, Rio de Janeiro, Brazil. LBNL-58004.
J. Carter, M. Soe, L. Oliker, Y. Tsuda, G. Vahala, L. Vahala, and A. Macnab (2005). Magnetohydrodynamic Turbulence Simulations on the Earth Simulator Using the Lattice Boltzmann Method. In Conference on High Performance Computing, Networking and Storage, edited by B. B. Jeff Kuehn, IEEE Computer Society Press, Seattle, WA. LBNL-58002. http://www-library.lbl.gov/docs/LBNL/580/02/PDF/LBNL-58002.pdf | http://www-library.lbl.gov/docs/LBNL/580/02/SRC/LBNL-58002.doc
X. Cartoixa and L.-W. Wang (2005). Microscopic dielectric response functions in semiconductor quantum dots. Physical Review Letter 94, 236804(1-4). LBNL-57948.
J. Chen, I. Yoon, and E. W. Bethel (2005). Interactive, Internet Delivery of Scientific Visualization via Structured, Prerendered Multiresolution Imagery. In IEEE Visualization 2005, Minneapolis, MN. LBNL-57528. http://www-library.lbl.gov/docs/LBNL/575/28/PDF/LBNL-57528.pdf
W. Chen, C. Iancu, and K. Yelick (2005). Communication Optimizations for Fine-Grained UPC Applications. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. LBNL-58382. http://www-library.lbl.gov/docs/LBNL/583/82/PDF/LBNL-58382.pdf
O. Chevassut, P.-A. Fouque, P. Gaudry, and D. Pointcheval (2006). The Twist-AUgmented Technique for key Exchange. In International Workshop on Practice and Theory in Public Key Cryptography (PKC 2006), New York. LBNL-54709.
A. J. Chorin, O. H. Hald, and R. Kupferman (2005). Optimal prediction with memory. Physica D 166, 239-257. LBNL-48661.
A. J. Chorin and P. Krause (2005). Dimensional reduction for a Bayesian filter. Proceedings of the National Academy of Sciences 101 (42), 15013-15017. LBNL-60019.
A. J. Chorin and P. Stinis (2005). Problem reduction, renormalization and memory. Communications and Applied Mathematicsl Computing Sciences 1, 1-27. LBNL-60029.
C. S. Co, A. Friedman, D. P. Grote, J.-L. Vay, E. W. Bethel, and K. I. Joy (2004). Interactive methods for exploring particle simulation data. In IEEE Visualization 2004, Austin, TX. LBNL-55353. http://www-library.lbl.gov/docs/LBNL/553/53/PDF/LBNL-55353.pdf
P. Colella, D. T. Graves, B. J. Keen, and D. Modiano (2004). A cartesian grid embedded boundary method for hyperbolic conservation laws. Journal of Computational Physics 51 (12), 1183-86. LBNL-56420. http://www-library.lbl.gov/docs/LBNL/564/20/PDF/LBNL-56420.pdf
P. Colella and T. Wen (2005). Adaptive mesh refinement in titanium. In 19th International Parallel and Distributed Processing Symposium, IEEE, Denver, CO. LBNL-56992. http://www-library.lbl.gov/docs/LBNL/569/92/PDF/LBNL-56992.pdf
G. Cong, M. Esser, B. Parvin, and G. Bebis (2004). Shape Metamorphism Using p-Laplacian Equation. In International Conference on Pattern Recognition, Oxford England. LBNL-55031. http://www-library.lbl.gov/docs/LBNL/550/31/PDF/LBNL-55031.pdf
U. Consortium (2005). UPC Language Specifications V1.2. LBNL-59208. http://www-library.lbl.gov/docs/LBNL/592/08/PDF/LBNL-59208.pdf
A. P. Craig, R. L. Jacob, B. Kauffman, T. Bettge, J. Larson, E. Ong, C. Ding, and Y. He (2005). Cpl6: The New Extensible, High-Performance Parallel Coupler for the Community Climate System Model. International Journal of High Performance Computing Applications 19 (3), 309-27. LBNL-58387. http://www-library.lbl.gov/docs/LBNL/583/87/PDF/LBNL-58387.pdf
C. Crawford, O. Kreylos, B. Hamann, and S. Crivelli (2005). Visualization of Force Fields in Protein Structure Prediction. In IEEE Visualization 2005, Minneapolis, NM. LBNL-58169. http://www-library.lbl.gov/docs/LBNL/581/69/PDF/LBNL-58169.pdf
S. Crivelli, O. Kreylos, N. Max, B. Hamann, and W. Bethel (2004). ProteinShop: A tool for interactive protein manipulation and steering. JCAMD. LBNL-53731.
W. Cui, V. Paxson, N. Weaver, and R. Katz (2005). Protocol-independent adaptive replay of application dialog. In Network and Distributed System Security Symposium, San Diego, CA. LBNL-60919.
M. S. Day, J. B. Bell, A. S. Almgren, V. E. Beckner, M. J. Lijewski, R. Cheng, I. Shepherd, and M. Johnson (2003). Numerical simulation of premixed turbulent methane combustion. In Second M.I.T. Conference on Computational Fluid and Solid Mechanics, edited by K. J. Bathe, Elsevier Science, Albuquerque, NM. LBNL-53655. http://www-library.lbl.gov/docs/LBNL/536/55/PDF/LBNL-53655.pdf
M. S. Day, J. B. Bell, J. F. Grcar, and V. E. Beckner (2005). Numerical control of 3d turbulent premixed flame simulations. In 20th International Colloquium on the Dynamics of Explosions and Reactive Systems, McGill University, Montreal, Canada. LBNL-56882 Ext. Abs. http://www-library.lbl.gov/docs/LBNL/568/82/PDF/LBNL-56882_Ext_Abs.pdf
M. S. Day, J. B. Bell, M. J. Lijewski, M. Johnson, R. K. Cheng, and I. G. Shepherd (2003). Adaptive low mach number simulations of a premixed turbulent laboratory burner. In The Fall 2003 Meeting of the Western States Section/The Combustion Institute, UCLA Campus (UCLA Faculty Center). LBNL-53986. http://www-library.lbl.gov/docs/LBNL/539/86/PDF/LBNL-53986.pdf
D. O. Demchenko and L.-W. Wang (2005). Optical transitions and nature of Stokes shift in spherical CdS quantum dots. Physical Review B. LBNL-59231.
J. Demmel, Y. Hida, W. Kahan, X. S. Li, S. Mukherjee, and E. J. Riedy (2005). Error bounds from extra precise iterative refinement. ACM Trans. on Mathematical Software. LBNL-56965.
T. Deschamps, R. Malladi, and I. Ravve (2005). Fast evolution of image manifolds and application to filtering and segmentation in 3D medical images. IEEE Transactions on Visualization and Computer Graphics 10, 525-535. LBNL-54479.
S. Dharmapurikar and V. Paxson (2005). Robust tcp stream reassembly in the presence of adversaries. In USENIX Security Symposium, Baltimore, Maryland. LBNL-60921.
C. Diesch (2004). Careers with a future. LBNL/PUB-857 Rev. http://www-library.lbl.gov/docs/PUB/857/PDF/PUB-857_Rev.pdf
C. Ding, X. He, R. F. Meraz, and S. R. Holbrook (2004). A unified representation of multi-protein complex data for modelling interaction networks. In RECOMB 2004 (Research in Computational Molecular Biology), San Diego, CA. LBNL-54915 Abs.
C. Ding, X. He, H. D. Simon, and R. Jin (2005). On the Equivalence of Nonnegative Matrix Factorization and K-means - Spectral Clustering. Journal of Machine Learning Research. LBNL-59622.
V. Donde, V. Lopez, B. Lesieutre, A. Pinar, C. Yang, and J. Meza (2005). Identification of Severe Multiple Contingencies in Electric Power Networks. In North American Power Symposium, Ames, IA. LBNL-57994.
Z. Dragojlovic, F. Najmabadi, and M. S. Day (2004). An embedded boundary method for viscous, conducting compressible flow. Journal of Computational Physics. LBNL-56627.
H. Dreger, A. Feldmann, M. Mai, V. Paxson, and R. Sommer (2006). Dynamic application-layer protocol analysis for network intrusion detection. In USENIX Security Symposium, Vancouver, Canada. LBNL-60918.
H. Dreger, A. Feldmann, V. Paxson, and R. Sommer (2004). Operational experiences with high-volume network intrusion detection. In ACM CCS, Washington, DC. LBNL-58843.
H. Dreger, C. Kreibich, V. Paxson, and R. Sommer (2005). Enhancing the accuracy of network-based intrusion detection with host-based context. In Conference on Detection of Intrusions and Malware and Vulnerability Assessment (DIMVA), Vienna, Austria. LBNL-58849.
L. A. Drummond (2005). The Forthcoming Petascale Systems Era: Got Tools? In SALISHAN CONFERENCE ON HIGH SPEED COMPUTING, Salishan, OR. LBNL-57099 Abs. http://www-library.lbl.gov/docs/LBNL/570/99/PDF/LBNL-57099_Abs.pdf
L. A. Drummond, V. Hernandez, O. Marques, J. E. Roman, and V. Vidal (2004). A Survey of High-Quality Computational Libraries and their Impact in Science and Engineering Applications. In High Performance Computing for Computational Science, VECPAR 2004, edited by J. D. M. Dayde, V. Hernandez and J. Palma, Springer-Verlag, Valencia, Spain, 3402. LBNL-56260 Conf. http://www-library.lbl.gov/docs/LBNL/562/60/PDF/LBNL-56260_Conf.pdf
L. A. Drummond and O. A. Marques (2002). Acts -- A collection of high performing software tools for scientific co mputing. In Tenth ECMWF Workshop on the Use of HPC in Meteorology, edited by W. Z. N. Kreitz, World Scientific, European Centre for Medium-Range Weather Forecasts,Reading, England. LBNL-53897.
L. A. Drummond and O. A. Marques (2005). An Overview of the Advanced CompuTational Software (ACTS) Collection. ACM Transactions on Mathematical Software 31 (3), 282-301. LBNL-58710. http://www-library.lbl.gov/docs/LBNL/587/10/PDF/LBNL-58710.pdf
L. A. Drummond, O. A. Marques, and G. V. Wilson (2003). An infrastructure for the creation of high end scientific and enginee ring software tools and applications. LBNL/PUB-3176. http://www-library.lbl.gov/docs/PUB/3176/PDF/PUB-3176.pdf
T. Drummond and O. Marques (2002). The ACTS collection robust and high-performance tools for scientific computing: Guidelines for tool inclusion and retirement. LBNL/PUB-3175. http://www-library.lbl.gov/docs/PUB/3175/PDF/PUB-3175.pdf
T. Dunigan, M. Mathis, and B. Tierney (2002). A TCP tuning daemon. In IEEE Supercomputing, Baltimore, Maryland. LBNL-51022. http://www-library.lbl.gov/docs/LBNL/510/22/PDF/LBNL-51022.pdf
B. Emmanuel, C. Olivier, E. Abdelilah, and P. David (2003). Mutual authentication and group key agreement for low-power mobile devices. In IEEE Conference on Mobile and Wireless Communication Networks, Singapore. LBNL-52542.
B. Emmanuel, C. Olivier, and P. David (2005). A Security Solution for IEEE 802.11's Ad-hoc Mode: Password-Authentication and Group Diffie-Hellman Key Exchange. International Journal of Wireless and Mobile Computing (SI), 1741-1084. LBNL-57432 JArt. http://www-library.lbl.gov/docs/LBNL/574/32/PDF/LBNL-57432_Conf.pdf
L. K. Fleischer, B. Hendrickson, and A. Pinar (2003). A divide-and-conquer algorithm for identifying strongly connected components. Networks: An International Journal. LBNL-51867.
R. J. Foley, A. V. Filippenko, D. C. Leonard, A. G. Riess, P. Nugent, and S. Perlmutter (2005). A Definitive Measurement of Time Dilation in the Spectral Evolution of the Moderate-Redshift Type Ia Supernova 1997ex. The Astrophysical Journal 626, 11-14. LBNL-57860.
J. P. U. Fynbo, J. Gorosabel, A. Smette, A. Fruchter, J. Hjorth, K. Pedersen, A. Levan, I. Burud, K. Sahu, P. M. Vreeswijk, E. Bergeron, C. Kouveliotou, N. Tanvir, S. E. Thorsett, R. A. M. J. Wijers, A. Castro-Tirado, P. Jakobsson, J. M. Castro Ceron, P. Garnavich, S. T. Holland, P. Moller, P. Nugent, E. Pian, J. Rhoads, D. Watson, and S. Woosley (2004). On the afterglow and host galaxy of GRB 021004: A comprehensive study with the Hubble Space Telescope. Astrophysical Journal 633 (1pt1), 317-27. LBNL-56729. http://www-library.lbl.gov/docs/LBNL/567/29/PDF/LBNL-56729.pdf
W. Gao, X. S. Li, C. Yang, and Z. Bai (2006). An Implementation and Evaluation of the AMLS Method for Sparse Eigenvalue Problems. ACM Trans. Math. Software. LBNL-57438.
C. Gatti-Bono and P. Colella (2005). An Anelastic Allspeed Projection Method for Gravitationally Stratified Flows. Journal of Computational Physics. LBNL-57158.
C. Gatti-Bono and C. Phillip (2005). A Filtering Method For Gravitationally Stratified Flows. Monthly Weather Review. LBNL-57161.
D. Givon, O. H. Hald, and R. Kupferman (2004). Existence proof for orthogonal dynamics and the Mori-Zwanzig formalism. Israel Journal of Mathematics 145, 221-241. LBNL-52136.
D. Givon, R. Kupferman, and A. Stuart (2004). Extracting macroscopic dynamics: Model problems and algorithms. Nonlinearity 17, R55-R127. LBNL-54463.
L. Gosink, J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2005). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets Using Fast Bitmap Indices. In 2005 HDF Workshop, San Francisco, CA. LBNL-59602 Ext. Abs. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602_Ext_Abs.pdf
L. Gosink, J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2006). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. LBNL-59602. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602.pdf
J. F. Grcar (2003). Optimal sensitivity analysis of linear least squares. SIAM Review. LBNL-52434.
J. F. Grcar (2004). John von Neumann Birthday Centennial. SIAM News 38 (2), 1. LBNL-57074. http://www-library.lbl.gov/docs/LBNL/570/74/PDF/LBNL-57074.pdf
J. F. Grcar, M. S. Day, and J. B. Bell (2003). Conditional and opposed reaction path diagrams for the analysis of fluid-chemistry interactions. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Japan. LBNL-52164. http://www-library.lbl.gov/docs/LBNL/521/64/PDF/LBNL-52164.pdf
J. F. Grcar, M. S. Day, and J. B. Bell (2004). A taxonomy of integral reaction path analysis. Combustion Theory and Modelling. LBNL-56772.
J. F. Grcar, P. Glarborg, J. B. Bell, M. S. Day, A. Loren, and A. D. Jensen (2003). Effects of mixing on ammonia oxidation in combustion environments at intermediate temperatures. Proceedings of the Combustion Institute. LBNL-54187. http://www-library.lbl.gov/docs/LBNL/541/87/PDF/LBNL-54187.pdf
J. A. Greenough, B. R. de Supinski, R. K. Yates, C. A. Rendleman, D. Skinner, V. Beckner, M. Lijewski, J. Bell, and J. C. Sexton (2005). Performance of a Block Structured, Hierarchical Adaptive Mesh Refinement Code on the 64k Node IBM BlueGene/L Computer. In SC|05 International Conference for High Performance Computing Networking and Storage, Seattle, WA. LBNL-57500. http://www-library.lbl.gov/docs/LBNL/575/00/PDF/LBNL-57500.pdf
G. Griem, L. Oliker, J. Shalf, and K. Yelick (2004). Identifying performance bottlenecks on modern microarchitectures using an adaptable probe. In 3rd International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems, Santa Fe, NM. LBNL-54901. http://www-library.lbl.gov/docs/LBNL/549/01/PDF/LBNL-54901.pdf
L. Grigori, J. W. Demmel, and X. S. Li (2005). Parallel Symbolic Factorization for Sparse LU with Static Pivoting. SIAM J. Scientific Computing. LBNL-59031.
L. Grigori and X. S. Li (2002). A new scheduling algorithm for parallel sparse LU factorization with static pivoting. In SC2002, Baltimore. LBNL-50520. http://www-library.lbl.gov/docs/LBNL/505/20/PDF/LBNL-50520.pdf
L. Grigori and X. S. Li (2004). Performance analysis of parallel supernodal sparse LU factorization. In PARA'04 Workshop on State-of-the-Art in Scientific Computing, LNCS, Lyngby, Copenhagen, Denmark. LBNL-54497. http://www-library.lbl.gov/docs/LBNL/544/97/PDF/LBNL-54497.pdf
L. Grigori and X. S. Li (2006). Towards an Accurate Performance Modeling of Parallel Sparse Factorization. Applicable Algebra in Engineering, Communication, and Computing. LBNL-60384.
F. A. Grunbaum and L. F. Matusevich (2005). Explicit inversion formulas for a model in diffuse tomography. Advances in Applied Mathematics 29 (2), 172-83. LBNL-51991.
D. Gunter, B. Tierney, J. Lee, M. Stoufer, K. Jackson, and B. Crowley (2002). Dynamic monitoring of high-performance distributed applications. In The 11th IEEE Symposium on High Performance Distributed Computing, Edinburgh, Scotland. LBNL-49698. http://www-library.lbl.gov/docs/LBNL/496/98/PDF/LBNL-49698.pdf
D. Gunter, B. L. Tierney, C. E. Tull, and V. Virmani (2003). On-demand grid application tuning and debugging with the netlogger activation service. In 4th International Workshop on Grid Computing (Grid2003), Phoenix, Arizona. LBNL-52991. http://www-library.lbl.gov/docs/LBNL/529/91/PDF/LBNL-52991.pdf
D. K. Gunter, K. Jackson, D. Konerding, J. Lee, and B. L. Tierney (2004). Essential elements for improved grid usability. In The Thirteenth IEEE International Symposium on High-Performance Distributed Computing, Honolulu, HI. LBNL-54838 Ext. Abs. http://www-library.lbl.gov/docs/LBNL/548/38/PDF/LBNL-54838_Ext_Abs.pdf
D. K. Gunter, B. L. Tierney, and S. J. Bailey (2005). Scalable Analysis of Distributed Workflow Traces. In The 2005 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV. LBNL-57060. http://www-library.lbl.gov/docs/LBNL/570/60/PDF/LBNL-57060.pdf
Y. He and C. H. Q. Ding (2005). Coupling Multi-Component Models with MPH on Distributed Memory Computer Architectures. International Journal of High Performance Computing Applications. LBNL-58385.
M. Humphrey, M. R. Thompson, and K. R. Jackson (2005). Security for grids. Proceedings of the IEEE 93 (3), 644-652. LBNL-54853. http://www-library.lbl.gov/docs/LBNL/548/53/PDF/LBNL-54853.pdf
C. Iancu, H. Parry, and P. Hargrove (2005). Hunting the Overlap. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. LBNL-58381. http://www-library.lbl.gov/docs/LBNL/583/81/PDF/LBNL-58381.pdf
K. R. Jackson (2002). pyGlobus: A python interface to the globus toolkit(TM). Concurrency and Computation: Practice and Experience 14 (13-15). LBNL-49370.
H. V. Jagadish and F. Olken (2003). Database management for life sciences research: Workshop report National Library of Medicine, February 2-3, 2003. LBNL-52767.
G. Jin (2003). Available bandwidth measurement and sampling. In ISMA 2003 Bandwidth Estimation Workshop BEst, SDSC Auditorium. LBNL-53919 Abs.
G. Jin (2004). Packet Drop Avoidance for High-speed network transmission protocol. In International Conference on Information Technology: Research and Education, London Metropolitan University, London, England. LBNL-53920. http://www-library.lbl.gov/docs/LBNL/539/20/PDF/LBNL-53920.pdf
S. Kamil, A. Pinar, D. Gunter, M. Lijewski, L. Oliker, J. Shalf, and D. Skinner (2006). Reconfigurable Hybrid Interconnection for \\ Static and Dynamic Scientific Applications. In International Conference for High Performance Computing, Networking, Storage and Analysis, Tampa, FL. LBNL-60060. http://www-library.lbl.gov/docs/LBNL/600/60/PDF/LBNL-60060.pdf
N. Kang and L. A. Drummond (2003). A first prototype of PyACTS. LBNL-53849. http://www-library.lbl.gov/docs/LBNL/538/49/PDF/LBNL-53849.pdf
D. Kasen, P. Nugent, R. C. Thomas, and L. Wang (2004). Could there be a hole in type Ia supernovae? Astrophysical Journal 610 (2 pt1), 876-87. LBNL-54943. http://www-library.lbl.gov/docs/LBNL/549/43/PDF/LBNL-54943.pdf | http://www-library.lbl.gov/docs/LBNL/549/43/PS/LBNL-54943.ps
D. N. Kasen (2004). Aspherical supernovae. In Physics, University of California, Berkeley, Berkeley, CA. LBNL-55141. http://www-library.lbl.gov/docs/LBNL/551/41/PDF/LBNL-55141.pdf | http://www-library.lbl.gov/docs/LBNL/551/41/PS/LBNL-55141.ps
D. Konerding (2004). An Essential Guide to the Basic Local Alignment Search Tool: BLAST by Ian Korf, Mark Yandell and Joseph Bledell. Briefings in Bioinformatics 5 (1), 93-94. LBNL-58202.
S. Kornexl, V. Paxson, H. Dreger, A. Feldmann, and R. Sommer (2005). Building a time machine for efficient recording and retrieval of high-volume network traffic. In ACM Internet Measurement Conference, Berkeley, CA. LBNL-58850.
W. T. C. Kramer, A. Shoshani, D. A. Agarwal, B. R. Draney, G. Jin, G. F. Butler, and J. A. Hules (2004). Deep scientific computing requires deep data. IBM Research and Development 48 (2), 209-232. LBNL-55724.
O. Kreylos, N. Max, B. Hamann, S. Crivelli, and W. Bethel (2003). Interactive protein manipulation. In Visualization 2003, Seattle, Washington. LBNL-52414.
R. Kupferman (2005). On the linear stability of plane couette flow for an Oldroyd-B fluid and its numerical approximation. Journal of Non-Newtonian Fluid Mechanics 127, 169-190. LBNL-56885.
R. Kupferman, G. A. Pavliotis, and A. M. Stuart (2004). Ito versus stratonovich white noise limits for systems with inertia and colored multiplicative noise. Physical Review E 70, 1-9. LBNL-54465.
R. Kupferman and A. M. Stuart (2004). Fitting SDE models to nonlinear Kac-Zwanzig heat bath models. Physica D 199, 279-316. LBNL-54462.
B. Lee and L.-W. Wang (2005). Electronic structure of Calcium hexaborides. Applied Physics Letters 87, 262509. LBNL-57944. http://www-library.lbl.gov/docs/LBNL/579/44/PDF/LBNL-57944.pdf | http://www-library.lbl.gov/docs/LBNL/579/44/PS/LBNL-57944.ps
B. Lee and L.-W. Wang (2006). Electronic Structure of zinc-blende AlGaN; Screened-Exchange Study. Physical Review B. LBNL-59272.
A. Levan, P. Nugent, A. Fruchter, I. Burud, D. Branch, J. Rhoads, A. Castro-Tirado, J. Gorosabel, J. M. C. Ceron, S. E. Thorsett, C. Kouveliotou, S. Golenetskii, J. Fynbo, P. Garnavich, S. Holland, J. Hjorth, P. Moller, E. Pian, N. Tanvir, M. Ulanov, R. Wijers, and S. Woosley (2004). GRB 020410: A Gamma-ray burst afterglow discovered by its supernova light. The Astrophysical Journal 624 (2pt1), 880-888. LBNL-54762. http://www-library.lbl.gov/docs/LBNL/547/62/PDF/LBNL-54762.pdf
J. Li and L.-w. Wang (2003). High energy excitations in CdSe quantum rods. Nano letters 3 (1). LBNL-51743.
J. Li and L.-W. Wang (2004). First principle calculations of ZnS:Te energy levels. Physical Review B 67. LBNL-53509.
J. Li and L.-W. Wang (2004). Deformation potentials of CdSe quantum dots. Applied Physics Letters 85 (14), 2929-2931. LBNL-55292. http://www-library.lbl.gov/docs/LBNL/552/92/PDF/LBNL-55292.pdf
J. Li and L.-W. Wang (2004). Comparison of quantum confinement effects between quantum wires and dots. Chemistry of Materials 16 (21), 4012-4015. LBNL-54814. http://www-library.lbl.gov/docs/LBNL/548/14/PDF/LBNL-54814.pdf
J. Li and L.-W. Wang (2004). First principle study of core/shell structure quantum dots. Applied Physics Letter 84 (18), 3648. LBNL-54810. http://www-library.lbl.gov/docs/LBNL/548/10/PDF/LBNL-54810.pdf
J. Li and L.-W. Wang (2005). Band-structure-corrected local density approximation study of semiconductor quantum dots and wires. Physical Review B 72 (12), 125325(1-15). LBNL-57945.
X. S. Li (2003). An overview of SuperLU: Algorithms, implementation, and user interface. ACM Trans. on Math. Software (Special Issue on the DOE ACTS Collection). LBNL-53848.
X. S. Li, W. Gao, P. J. R. Husbands, C. Yang, and E. G. Ng (2005). The Roles of Sparse Direct Methods in Large-scale Simulations. In SciDAC 2005, San Francisco, CA. LBNL-58654. http://www-library.lbl.gov/docs/LBNL/586/54/PDF/LBNL-58654.pdf
X. S. Li and Y. Wang (2003). Performance evaluation and enhancement of SuperLU_DIST 2.0. LBNL-53624. http://www-library.lbl.gov/docs/LBNL/536/24/PDF/LBNL-53624.pdf
F. Liang, S. Meder, O. Chevassut, and F. Siebenlist (2004). Secure password-based authenticated key exchange for web services. In ACM Computer and Communications Security (ACM CCS), Workshop on Secure Web Services (SWS), Washington, DC. LBNL-56361. http://www-library.lbl.gov/docs/LBNL/563/61/PDF/LBNL-56361.pdf
C. Lidman, D. A. Howell, G. Folatelli, G. Garavini, S. Nobili, G. Aldering, R. Amanullah, P. Antilogus, P. Astier, G. Blanc, M. S. Burns, A. Conley, S. E. Deustua, M. Doi, R. Ellis, S. Fabbro, V. Fadeyev, R. Gibbons, G. Goldhaber, A. Goobar, D. E. Groom, I. Hook, N. Kashikawa, A. G. Kim, R. A. Knop, B. C. Lee, J. Mendez, T. Morokuma, K. Motohara, P. E. Nugent, R. Pain, S. Perlmutter, V. Prasad, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, B. E. Schaefer, K. Schahmaneche, E. Smith, A. L. Spadafora, V. Stanishev, N. A. Walton, L. Wang, W. M. Wood-Vasey, and N. Yasuda (2004). Spectroscopic confirmation of high-redshift supernovae with the ESO VLT. Astronomy and Astrophysics 430, 843-851. LBNL-57859.
B. Lowekamp, B. Tierney, L. Cottrell, R. Hughes-Jones, T. Kielmann, and M. Swany (2003). Enabling network measurement portability through a hierarchy of characteristics. In Grid 2003, Phoenix, AZ. LBNL-53013. http://www-library.lbl.gov/docs/LBNL/530/13/PDF/LBNL-53013.pdf
J. W. Luo, S. S. Li, J. B. Xia, and L.-W. Wang (2005). A comparative study for colloidal quantum dot calculations. Applied Physics Letter. LBNL-57947.
J.-W. Luo, S.-S. Li, J.-B. Xia, and L.-W. Wang (2005). Photoluminescence pressure coefficients of InAs/GaAs quantum dots. Physical Review B 71, 245315(1-5). LBNL-57950.
L. Manna, L. W. Wang, R. Cingolani, and A. P. Alivisatos (2005). First-principles modeling of unpassivated and surfactant-passivated bulk facets of wurtzite CdSe: A Model System for Studying the Anisotropic Growth of CdSe Nanocrystals. Journal of Physical Chemistry B 109 (13), 6183-92. LBNL-57949.
V. M. Markowitz, F. Korzeniewski, K. Palaniappan, and E. Szeto (2005). The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. In VLDB 2005, Trondheim, Norway. LBNL-57134.
V. M. Markowitz, F. Korzeniewski, K. Palaniappan, E. Szeto, N. Ivanova, N. Kyrpides, and P. Hugenholtz (2006). An Experimental Metagenome Data Management and Analysis System. In ISMB 2006, Fortaleza, Brazil. LBNL-60051. http://www-library.lbl.gov/docs/LBNL/600/51/PDF/LBNL-60051.pdf
O. Marques, J. Riedy, and C. Voemel (2006). Benefits of IEEE-754 features in modern symmetric tridiagonal eigensolvers. SIAM Journal on Scientific Computing (SISC). LBNL-58944.
D. F. Martin, P. Colella, M. Anghel, and F. J. Alexander (2005). Adaptive mesh refinement for multiscale nonequilibrium physics. Computing in Science and Engineering 7 (3), 24-31. LBNL-58786.
P. McCorquodale (2003). AMRNodeElliptic software package node-centered AMR for elliptic probl ems. LBNL-53686. http://www-library.lbl.gov/docs/LBNL/536/86/PDF/LBNL-53686.pdf
P. McCorquodale (2003). AMRNodeElliptic user guide: On rectangular problem domains. LBNL-53687. http://www-library.lbl.gov/docs/LBNL/536/87/PDF/LBNL-53687.pdf
P. McCorquodale (2003). AMRNodeElliptic user guide: On irregular problem domains. LBNL-53688. http://www-library.lbl.gov/docs/LBNL/536/88/PDF/LBNL-53688.pdf
P. McCorquodale, P. Colella, D. P. Grote, and J.-L. Vay (2004). A node-centered local refinement algorithm for poisson's equation in complex geometries. A node-centered local refinement algorithm for poisson's equation in complex geometries. LBNL-54138.
J. C. Meza and R. A. Oliva (2003). An Object Oriented Library To Manage The Collection Of Schittkowki Test Problems For Nonlinear Optimization. In ACM Richard Tapia Celebration of Diversity in Computing 2003, Atlanta, GA. LBNL-53685.
J. C. Meza, R. A. Oliva, P. D. Hough, and P. J. Williams (2003). OPT++: An object-oriented toolkit for nonlinear optimization. ACM Transactions on Mathematical Software. LBNL-54161.
G. H. Miller (2003). An iterative Riemann solver for systems of hyperbolic conservation law s, with application to hyperelastic solid mechanics. Journal of Computational Physics 193 (1). LBNL-53795.
G. H. Miller (2004). Minimal rotationally-invariant bases for hyperelasticity. SIAM Journal on Applied Mathematics 64 (6), 2050-75. LBNL-55531.
S. Nobili, R. Amanullah, G. Garavini, A. Goobar, C. Lidman, V. Stanishev, G. Aldering, P. Antilogus, P. Astier, M. S. Burns, A. Conley, S. E. Deustua, R. Ellis, S. Fabbro, V. Fadeyev, G. Folatelli, R. Gibbons, G. Goldhaber, D. E. Groom, I. Hook, D. A. Howell, A. G. Kim, R. A. Knop, P. E. Nugent, R. Pain, S. Perlmutter, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, K. Schahmaneche, E. Smith, A. L. Spadafora, R. C. Thomas, and L. Wang (2005). Restframe I-band Hubble diagram for type Ia supernovae up to redshift z ~ 0.5. Astronomy and Astrophysics 437, 789-804. LBNL-58330. http://www-library.lbl.gov/docs/LBNL/583/30/PDF/LBNL-58330.pdf
P. Nugent (2005). UV Spectroscopy of Type Ia Supernovae at Low- and High-Redshift. In 1604-2004 Supernovae as Cosmological Lighthouses, edited by T. e. al., ASP, Padua, Italy. LBNL-58336. http://www-library.lbl.gov/docs/LBNL/583/36/PDF/LBNL-58336.pdf
P. Nugent, M. Sullivan, R. Ellis, A. Gal-Yam, D. Leonard, D. Howell, P. Astier, R. Carlberg, A. Conley, S. Fabbro, F. D., J. Neill, R. Pain, K. Perrett, and C. Pritchet (2006). Towards a Cosmological Hubble Diagram for Type II-P Supernovae. Astrophysical Journal. LBNL-59881.
L. Oliker (2004). Performance evaluation of the SX-6 vector architecture for scientific computations. In SIAM Parallel Processing for Scientific Computing, San Francisco, CA. LBNL-54904 Abs.
L. Oliker, R. Biswas, J. Borrill, A. Canning, J. Carter, J. Djomehri, H. Shan, and D. Skinner (2004). A performance evaluation of the Cray X1 for scientific applications. In VECPAR'04: 6th International Meeting on High Performance Computing for Computational Science, Valencia, Spain. LBNL-54905. http://www-library.lbl.gov/docs/LBNL/549/05/PDF/LBNL-54905.pdf
L. Oliker, R. Biswas, H. Shan, and W. Smith (2004). Job scheduling in a heterogenous grid environment. LBNL-54906. http://www-library.lbl.gov/docs/LBNL/549/06/PDF/LBNL-54906.pdf
L. Oliker, A. Canning, J. Carter, J. Shalf, D. Skinner, S. Ethier, R. Biswas, J. Djomehri, and R. Van der Wijngaart (2003). Evaluation of cache-based superscalar and cacheless vector architectures for scientific computations. In SC2003: High Performance Computing, Networking and Storage Conference, Phoenix, AZ. LBNL-53117. http://www-library.lbl.gov/docs/LBNL/531/17/PDF/LBNL-53117.pdf
L. Oliker, J. Duell, M. Narayanan, and S. Chatterji (2003). Performance evaluation of two emerging media processors: VIRAM and imagine. In Workshop on Parallel and Distributed Image Processing, Video Processing, and Multimedia (PDIVM), Nice, France. LBNL-53116. http://www-library.lbl.gov/docs/LBNL/531/16/PDF/LBNL-53116.pdf
L. Oliker, X. Li, P. Husbands, and R. Biswas (2002). Effects of ordering strategies and programming paradigms on sparse matrix computations. SIAM Review 44 (3). LBNL-53113.
R. Oliva, S. Crivelli, and J. Meza (2004). Protein-folding via divide-and-conquer optimization. In SIAM Conference on the Life Sciences, Portland, OR. LBNL-55869. http://www-library.lbl.gov/docs/LBNL/558/69/PDF/LBNL-55869.pdf
D. L. Olson (2002). Summary of Parallel Session I: Grid testbeds and applications. In VIII International Workshop on Advanced Computing and Analysis Techniques in Physics Research, Moscow, Russia. LBNL-52197. http://www-library.lbl.gov/docs/LBNL/521/97/PDF/LBNL-52197.pdf
E. Otoo, D. Rotem, and A. Romosan (2004). Optimal file-bundle caching algorithms for data-grids. In SC2004 High Performance Computing, Networking and Storage Conference, Pittsburg, PA. LBNL-54881. http://www-library.lbl.gov/docs/LBNL/548/81/PDF/LBNL-54881.pdf
E. Otoo, D. Rotem, A. Romosan, and S. Seshadri (2004). File caching in data intensive scientific applications. In 1st International Workshop on Data Management in Grids, edited by none, Springer Verlag, Lecture Notes in Computer Science, LNCS, Trondheim, Norway. LBNL-55587. http://www-library.lbl.gov/docs/LBNL/555/87/PDF/LBNL-55587.pdf
E. J. Otoo, D. Rotem, and S. Seshadri (2004). Efficient algorithms for multi-file caching. In 15th International Conference on Database and Expert Systems Applications, Zaragoza, Spain. LBNL-54880. http://www-library.lbl.gov/docs/LBNL/548/80/PDF/LBNL-54880.pdf
E. J. Otoo, D. Rotem, and A. Shoshani (2003). Impact of admission and cache replacement policies on response times of jobs on data grids. In Challenges of Large Applications in Distributed Environments (CLADE'2003), edited by I. B. Raymond Bair, IEEE, Computer Society, Seattle, Washington. LBNL-53022. http://www-library.lbl.gov/docs/LBNL/530/22/PDF/LBNL-53022.pdf
E. J. Otoo and A. Shoshani (2003). Accurate modeling of cache replacement policies in a Data-Grid. In Twentieth IEEE/Eleventh NASA Goddard Conference on Mass Storage System & Technologies, edited by B. K. a. J. Cole, IEEE Computer Society, San Diego, California. LBNL-53023. http://www-library.lbl.gov/docs/LBNL/530/23/PDF/LBNL-53023.pdf
R. Pang, M. Allman, V. Paxson, and J. Lee (2005). The devil and packet trace anonymization. Computer Communication Review3 36 (1). LBNL-57630 JArt.
R. Pang, V. Yegneswaran, P. Barford, V. Paxson, and L. Peterson (2004). Characteristics of internet background radiation. In ACM Internet Measurement Conference, Taormina, Italy. LBNL-58848.
B. Parvin, Q. Yang, G. Fontenay, and M. Barcellos-Hoff (2003). An image-based informatics system for phenotypic studies. IEEE Computers. LBNL-51202.
S. Peggs, T. Satogata, D. Agarwal, and D. Rice (2003). Remote operations in a global accelerator network. In Particle Accelerator Conference, Portland, OR. LBNL-52947. http://www-library.lbl.gov/docs/LBNL/529/47/PDF/LBNL-52947.pdf
M. Perry and D. Agarwal (2003). Collaborative editing within the pervasive collaborative computing environment. In 5th International Workshop on Collaborative Editing, European Computer Support for Cooperative Work Conference 2003 (ECSCW2003), Helsinki, Finland. LBNL-53769. http://www-library.lbl.gov/docs/LBNL/537/69/PDF/LBNL-53769.pdf | http://www-library.lbl.gov/docs/LBNL/537/69/SRC/LBNL-53769.doc
A. Pinar (2003). High-performance combinatorial algorithms. LBNL-53989. http://www-library.lbl.gov/docs/LBNL/539/89/PDF/LBNL-53989.pdf | http://www-library.lbl.gov/docs/LBNL/539/89/SRC/LBNL-53989.doc
A. Pinar and C. Aykanat (2005). One-dimensional partitioning for heterogeneous systems. Journal of Parallel and Distributed Systems. LBNL-56876.
A. Pinar, E. Chow, and A. Pothen (2005). Combinatorial Algorithms for Computing Column Space Bases That Have Sparse Inverses. Electronic Transactions on Numerical Algorithms. LBNL-52482.
A. Pinar and B. Hendrickson (2003). Interprocessor communication with limited memory. IEEE Transactions on Parallel and Distributed Systems. LBNL-51863.
A. Pinar and B. Hendrickson (2003). Improving load balance with flexibly assignable tasks. IEEE Transactions on Parallel and Distributed Systems. LBNL-53758.
A. Pinar and B. Hendrickson (2005). Combinatorial Parallel and Scientific Computing. In Parallel Processing for Scientific Computing, edited by M. H. Padma Raghavan, Horst Simon, SIAM, Vol., p. LBNL-58658. http://www-library.lbl.gov/docs/LBNL/586/58/PDF/LBNL-58658.pdf | http://www-library.lbl.gov/docs/LBNL/586/58/PS/LBNL-58658.ps
A. Pinar, M. Singh, and E. Ng (2003). Nested dissection orderings for LU factorization with static pivoting. In SIAM Workshop on Combinatorial Scientific Computing, San Francisco. LBNL-53988 Abs. http://www-library.lbl.gov/docs/LBNL/539/88/PDF/LBNL-53988_Abs.pdf
A. Pinar, T. Tao, and H. Ferhatosmanoglu (2004). Compressing bitmap indices by data reorganization. In International Conference on Data Engineering, IEEE, Tokyo, Japan. LBNL-55690. http://www-library.lbl.gov/docs/LBNL/556/90/PDF/LBNL-55690.pdf | http://www-library.lbl.gov/docs/LBNL/556/90/PS/LBNL-55690.ps
A. Pinar and V. Vassilevska (2004). Finding nonoverlapping substructures of a sparse matrix. Electronic Transactions on Numerical Analysis 21, 107-124. LBNL-56116. http://www-library.lbl.gov/docs/LBNL/561/16/PDF/LBNL-56116.pdf
A. Pinar and V. Vassilevska (2005). Finding Nonoverlapping Substructures of a Sparse Matrix. Electric Transactions Numerical Analysis 21, 107-124. LBNL-54498. http://www-library.lbl.gov/docs/LBNL/544/98/PDF/LBNL-54498.pdf | http://www-library.lbl.gov/docs/LBNL/544/98/PS/LBNL-54498.ps
E. Pourabbas and A. Shoshani (2005). The Composite OLAP-Object Data Model. LBNL-59229. http://www-library.lbl.gov/docs/LBNL/592/29/PDF/LBNL-59229.pdf
E. Pourabbas and A. Shoshani (2006). Efficient Estimation of Joint Queries from Multiple OLAP Databases. ACM Transactions on Database Systems. LBNL-61114.
T. N. Rescigno, M. Baertschy, and C. W. McCurdy (2003). Resolution of phase ambiguities in electron-impact ionization amplitudes. Physical Review A 68 (3). LBNL-53570.
M. A. Richards and H. D. Simon (2005). Enabling Computational Science and Engineering at Berkeley. LBNL/PUB-947.
D. Rotem, K. Stockinger, and K. Wu (2004). Efficient binning for bitmap indices on high-cardinality attributes. LBNL-56936. http://www-library.lbl.gov/docs/LBNL/569/36/PDF/LBNL-56936.pdf
D. Rotem, K. Stockinger, and K. Wu (2005). Towards Optimal Multi-Dimensional Query Processing with Bitmap Indices. LBNL-58755. http://www-library.lbl.gov/docs/LBNL/587/55/PDF/LBNL-58755.pdf
D. Rotem, K. Stockinger, and K. Wu (2005). Optimizing Candidate Check Costs for Bitmap Indices. In The ACM Conference on Information and Knowledge Management (CIKM), Bremen, Germany. LBNL-58754. http://www-library.lbl.gov/docs/LBNL/587/54/PDF/LBNL-58754.pdf
D. Rotem, K. Stockinger, and K. Wu (2005). Optimizing I/O Costs of Multi-Dimensional Queries using Bitmap Indices. In International Conference on Database and Expert Systems Applications (DEXA), Copenhagen, Denmark. LBNL-57621. http://www-library.lbl.gov/docs/LBNL/576/21/PDF/LBNL-57621.pdf
D. Rotem, K. Stockinger, and K. Wu (2006). Minimizing I/O Costs of Multi-Dimensional Queries with Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. LBNL-59949. http://www-library.lbl.gov/docs/LBNL/599/49/PDF/LBNL-59949.pdf
S. Sankaran, J. M. Squyres, B. Barrett, A. Lumsdaine, J. Duell, P. Hargrove, and E. Roman (2003). The LAM/MPI checkpoint/restart framework: System-initiated checkpointing. In 2003 Los Alamos Computer Science Institute Symposium, El Dorado Hotel; Santa Fe, NM. LBNL-53808. http://www-library.lbl.gov/docs/LBNL/538/08/PDF/LBNL-53808.pdf
B. D. Santer, T. M. L. Wigley, C. Mears, F. J. Wentz, S. A. Klein, D. J. Seidel, K. E. Taylor, P. W. Thorne, M. F. Wehner, P. J. Gleckler, J. S. Boyle, W. D. Collins, K. W. Dixon, C. Doutriaux, M. Free, Q. Fu, J. E. Hansen, G. S. Jones, R. Ruedy, T. R. Karl, J. R. Lanzante, G. A. Meehl, V. Ramaswamy, G. Russell, and G. A. Schmidt (2005). Amplification of surface temperature trends and variability in the tropical atmosphere. Science 309 (5740), 1551-1556. LBNL-58623. http://www-library.lbl.gov/docs/LBNL/586/23/PDF/LBNL-58623.pdf
P. Schwartz, D. Adalsteinsson, P. Colella, A. P. Arkin, and M. Onsum (2005). Numerical Computation of Diffusion on a Surface. Proceedings of the National Academy of Science 102 (32), 11151-56. LBNL-57156. http://www-library.lbl.gov/docs/LBNL/571/56/PDF/LBNL-57156.pdf
P. Schwartz, M. Barad, P. Colella, and T. Ligocki (2004). A cartesian grid embedded boundary method for the heat equation and poisson's equation in three dimensions. Journal of Computational Physics 211 (2), 531-50. LBNL-56607. http://www-library.lbl.gov/docs/LBNL/566/07/PDF/LBNL-56607.pdf
N. Shah, O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann, and I. Dubchak (2004). Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA Sequence Alignments. LBNL-54136. http://www-library.lbl.gov/docs/LBNL/541/36/PDF/LBNL-54136.pdf
N. Shah, O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann, and Dubchak.I. (2003). Phylo-vista: Interactive visualization of DNA multiple alignments. Bioinformatics 20 (5). LBNL-54135.
N. Shah, A. Poliakov, D. Ryaboy, M. V. Teplitsky, B. Hamann, E. M. Rubin, and I. L. Dubchak (2004). VISTA tools for interactive visualization and analysis of multiple alignments of DNA sequences and whole genomes. In The Biology of Genomes, Cold Spring Harbor, NY, USA. LBNL-55394 Abs. http://www-library.lbl.gov/docs/LBNL/553/94/PDF/LBNL-55394_Abs.pdf
N. Shah, G. H. Weber, S. E. Dillard, and B. Hamann (2004). Volume visualization of multiple alignment of genomic DNA. In IEEE Symposium on Information Visualization, IEEE Press, Austin TX. LBNL-55386. http://www-library.lbl.gov/docs/LBNL/553/86/PDF/LBNL-55386.pdf
J. Shalf, M. J. Bennett, and G. Bell (2003). Transport requirements for high performance network applications that are NOT FTP. In Second International Workshop on Protocols for Fast Long-Distance Networks, Chicago, Illinois. LBNL-54031 Abs. http://www-library.lbl.gov/docs/LBNL/540/31/PDF/LBNL-54031_Abs.pdf
J. Shalf, E. W. Bethel, and C. Siegerist (2004). Personal Display Wall. LBNL/PUB-894. http://www-library.lbl.gov/docs/PUB/894/PDF/PUB-894.pdf
J. Shalf and T. Goodale (2004). GridRun: A lightweight packaging and execution environment for compact, multi-architecture binaries. In Thirteenth IEEE International Symposium on High-Performance Distributed Computing, Honolulu, HI. LBNL-54576 Ext. Abs. http://www-library.lbl.gov/docs/LBNL/545/76/PDF/LBNL-54576_Ext._Abs.pdf
H. Shan, L. Oliker, and R. Biswas (2003). Job superscheduler architecture and performance in computational grid environments. In SC2003: High performance computing, networking, and storage conference, Phoenix, AZ. LBNL-53118.
H. Shan, J. P. Singh, L. Oliker, and R. Biswas (2002). Message passing and shared address space parallelism on an SMP cluster. Parallel Computing 29. LBNL-53114.
H. Shan and E. Strohmaier (2004). Performance characteristics of the Cray X1 and their implications for application performance tuning. In 18th Annual ACM International Conference on SUpercomputing, edited by G. Feautrier, Seznec, Association for Computing Machinery, St. Malo, France. LBNL-55082. http://www-library.lbl.gov/docs/LBNL/550/82/PDF/LBNL-55082.pdf
H. Shan and E. Strohmaier (2005). MPI, SHMEM, and UPC Performance on the Cray X1 - A Case Study using APEX-Map. In Cray User Group Conference 2005, Albuquerque, NM. LBNL-58411. http://www-library.lbl.gov/docs/LBNL/584/11/PDF/LBNL-58411.pdf
H. Shan, E. Strohmaier, and L. Oliker (2004). Optimizing performance of superscalar codes for a single Cray X1 MSP processor. In Cray Uers Group CUG 2004, Knoxville, TN. LBNL-55635. http://www-library.lbl.gov/docs/LBNL/556/35/PDF/LBNL-55635.pdf
A. Shoshani (2006). The Scientific Data Management Center. LBNL/PUB-964. http://www-library.lbl.gov/docs/PUB/964/PDF/PUB-964.pdf
A. Shoshani, A. Sim, and K. Stockinger (2005). RRS: Replica Registration Service for Data Grids. In VLDB Workshop on Data Management in Grids, Trondheim, Norway. LBNL-58295. http://www-library.lbl.gov/docs/LBNL/582/95/PDF/LBNL-58295.pdf
C. Siegerist, J. Shalf, and E. W. Bethel (2004). VisPortal: Increasing Scientific Productivity by Simplifying Access to and Use of Remote Computational Resources. LBNL/PUB-893. http://www-library.lbl.gov/docs/PUB/893/PDF/PUB-893.pdf
C. Siegerist, J. Shalf, E. W. Bethel, and C. Siegerist (2004). Interactive Remote and Distributed Visualization of Fusion Simulation Results. LBNL/PUB-892. http://www-library.lbl.gov/docs/PUB/892/PDF/PUB-892.pdf
A. Sim, J. Gu, A. Shoshani, and V. Natarajan (2004). DataMover: robust terabyte-scale multi-file replication over wide-area networks. In Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM 2004), Greece. LBNL-54854. http://www-library.lbl.gov/docs/LBNL/548/54/PDF/LBNL-54854.pdf
H. Simon, W. Kramer, W. Saphir, J. Shalf, D. Bailey, L. Oliker, M. Banda, C. W. McCurdy, J. Hules, A. Canning, M. Day, P. Colella, D. Serafini, M. Wehner, and P. Nugent (2004). Science-driven system architecture: A new process for leadership class computing. Journal of the Earth Simulator 2, 2-10. LBNL-56545. http://www-library.lbl.gov/docs/LBNL/565/45/PDF/LBNL-56545.pdf
H. D. Simon, L. Oliker, A. Canning, J. Carter, S. Ethier, and J. Shalf (2004). Evaluation of leading scalar and vector architectures for scientific computations. LBNL-55291. http://www-library.lbl.gov/docs/LBNL/552/91/PDF/LBNL-55291.pdf
G. C. Smith III (2005). OS X Security Set-Up and User's Guide. LBNL/PUB-3186. http://www-library.lbl.gov/docs/PUB/3186/PDF/PUB-3186.pdf | http://www-library.lbl.gov/docs/PUB/3186/SRC/PUB-3186.doc
R. Sommer and V. Paxson (2005). Exploiting independent state for network intrusion detection. In Annual Computer Security Applications Conference, Tucson, AZ. LBNL-58851.
E. d. Souza (2003). A simulation-based study of HighSpeed TCP and its deployment. In School of Electrical and Computer Engineering, State University of Campinas, Campinas/SP - Brazil. LBNL-52549. http://www-library.lbl.gov/docs/LBNL/525/49/PDF/LBNL-52549.pdf
E. d. Souza and D. Agarwal (2003). A highspeed TCP Study: Characteristics and Deployment Issues. In Not yet available, disneyland. LBNL-53215.
C. Spierling and I. Collaboration (2004). The icecube project. In VLVnT Workshop on Technical Aspects of a Very Large Volume Neutrino Telescope in the Mediterrenean Sea, Amsterdam, The Netherlands, astro-ph/0404090. LBNL-55610.
D. Stern, P. G. van Dokkum, P. Nugent, D. J. Sand, R. S. Ellis, M. Sullivan, J. S. Bloom, D. A. Frail, J.-P. Kneib, L. V. E. Koopmans, and T. Treu (2004). Discovery of a transient U-band dropout in a lyman break survey: A tidally disrupted star at z=3.3? Astrophysical Journal 612, 690-97. LBNL-56715.
P. Stinis (2005). A comparative study of two stochastic mode reduction methods. Physica D 213 (2), 197-213. LBNL-54484.
P. Stinis (2005). A Hybrid Method for the Inviscid Burgers Equation. Discrete and Continuous Dynamical Systems 9 (4), 793-799. LBNL-51996.
P. Stinis and A. J. Chorin (2006). Numerical scaling analysis of the small-scale structure in turbulence. to be submitted for publication. LBNL-59490.
K. Stockinger, D. Rotem, A. Shoshani, and K. Wu (2006). Analyzing Enron Data: Bitmap Indexing Outperforms MySQL Queries by Several Orders of Magnitude. LBNL-59437. http://www-library.lbl.gov/docs/LBNL/594/37/PDF/LBNL-59437.pdf
K. Stockinger, J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. In International conference on Scientific and Statistical Database Management (SSDBM 2005), Santa Barbara, California. LBNL-57023 Conf. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023_Conf.pdf
K. Stockinger, J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. LBNL-57023. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023.pdf
K. Stockinger, J. Shalf, K. Wu, and E. W. Bethel (2005). Query-Driven Visualization of Large Data Sets. In IEEE Visualization, Minneapolis, MN. LBNL-57511. http://www-library.lbl.gov/docs/LBNL/575/11/PDF/LBNL-57511.pdf
K. Stockinger and K. Wu (2004). Improved searching for spatial features in spatio-temporal data. LBNL-56376. http://www-library.lbl.gov/docs/LBNL/563/76/PDF/LBNL-56376.pdf | http://www-library.lbl.gov/docs/LBNL/563/76/PS/LBNL-56376.ps
K. Stockinger and K. Wu (2006). Bitmap Indices for Data Warehouses. In Data Warehouses and OLAP: Concepts, Architectures and Solutions, edited by C. K. R. Wrembel, Idea Group, Inc., Vol., p. LBNL-59952. http://www-library.lbl.gov/docs/LBNL/599/52/PDF/LBNL-59952.pdf
K. Stockinger, K. Wu, R. Brun, and P. Canal (2005). Bitmap Indices for Fast End-User Physics Analysis in ROOT. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. LBNL-58426.
K. Stockinger, K. Wu, S. Campbell, S. Lau, M. Fisk, E. Gavrilov, A. Kent, C. E. Davis, R. Olinger, R. Young, J. Prewett, P. Weber, T. P. Caudell, E. W. Bethel, and S. Smith (2005). Network Traffic Analysis With Query Driven VisualizationSC 2005 HPC Analytics Results. In Supercomputing 2005, ACM - Association for Computing Machinery, Seattle, Washingoton. LBNL-58768. http://www-library.lbl.gov/docs/LBNL/587/68/PDF/LBNL-58768.pdf
K. Stockinger, K. Wu, and A. Shoshani (2004). Evaluation Strategies for Bitmap Indices with Binning. In 15th International Conference on Database and Expert Systems Applications (DEXA), edited by T. Galindo, and Traunmuller, Springer-Verlag, Zaragoza, Spain, 3180. LBNL-55540. http://www-library.lbl.gov/docs/LBNL/555/40/PDF/LBNL-55540.pdf | http://www-library.lbl.gov/docs/LBNL/555/40/PS/LBNL-55540.ps
E. Strohmaier (2003). Top500 list's twice-yearly snapshots of world's fastest supercomputers develop into big picture of changing technology. Scientific Computing and Instrumentation 20 (9). LBNL-53838.
E. Strohmaier (2005). 20 Years Supercomputer Market Analysis. In International Supercomputing Conference, Heidelberg, Germany. LBNL-58442. http://www-library.lbl.gov/docs/LBNL/584/42/PDF/LBNL-58442.pdf
E. Strohmaier, D. J. J., H. W. Meuer, and H. D. Simon (2004). Recent Trends in the Marketplace of High Performance Computing. Cyberinfrastructure Technology Watch 1 (1), 12-16. LBNL-58444.
E. Strohmaier, D. J. J., H. W. Meuer, and H. D. Simon (2005). Recent Trends in the Marketplace of High Performance Computing. Parallel Computing 31, 261-273. LBNL-58443. http://www-library.lbl.gov/docs/LBNL/584/43/PDF/LBNL-58443.pdf
E. Strohmaier and H. W. Meuer (2003). Supercomputing: What have we learned from the TOP500 project? In Algorithmy 2002, Conference on Scientific Computing, Vysoke Tatry, Podbanske. LBNL-53653.
E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2004). TOP500 Supercomputers for November 2004. LBNL-58532. http://www-library.lbl.gov/docs/LBNL/585/32/PDF/LBNL-58532.pdf
E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2004). TOP500 Supercomputers for June 2004. LBNL-58539. http://www-library.lbl.gov/docs/LBNL/585/39/PDF/LBNL-58539.pdf
E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2005). TOP500 Supercomputers for June 2005. LBNL-58531. http://www-library.lbl.gov/docs/LBNL/585/31/PDF/LBNL-58531.pdf
E. Strohmaier and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications. In MASCOTS 2004, Volendam, The Netherlands. LBNL-56306. http://www-library.lbl.gov/docs/LBNL/563/06/PDF/LBNL-56306.pdf
E. Strohmaier and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications. LBID-2511.
E. Strohmaier and H. Shan (2005). Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms. In SC 05, Seattle, WA. LBNL-58409. http://www-library.lbl.gov/docs/LBNL/584/09/PDF/LBNL-58409.pdf
E. Strohmaier and H. Shan (2005). Apex-Map: A Synthetic Scalable Benchmark Probe to Explore Data Access Performance on Highly Parallel Systems. In EuroPar 2005, Lisbon, Portugal. LBNL-58410. http://www-library.lbl.gov/docs/LBNL/584/10/PDF/LBNL-58410.pdf
M. Sullivan, D. A. Howell, K. Perrett, P. E. Nugent, P. Astier, E. Aubourg, D. Balam, S. Basa, R. G. Carlberg, A. Conley, S. Fabbro, D. Fouchez, J. Guy, I. Hook, H. Lafoux, J. D. Neill, R. Pain, N. Palanque-Delabrouille, C. J. Pritchet, N. Regnault, J. Rich, R. Taillet, G. Aldering, S. Baumont, J. Bronder, M. Filiol, R. A. Knop, S. Perlmutter, and C. Tao (2006). Photometric Selection of High-Redshift Type Ia Supernova Candidates. The Astronomical Journal 131 (2), 960-972. LBNL-60286.
D. M. Summers (2005). A three-dimensional multiscale particle dispersion satisfying a similarity condition. submitted for publication. LBNL-58765.
M. R. Thompson, A. Essiari, K. Keahey, V. Welch, and B. Liu (2003). Fine-grained authorization for job and resource management using akenti and the globus toolkit. In 2003 Conference for Computing in High Energy and Nuclear Physics (CHEP03), La Jolla, CA. LBNL-52976. http://www-library.lbl.gov/docs/LBNL/529/76/PDF/LBNL-52976.pdf
M. R. Thompson, A. Essiari, and S. Mudumbai (2003). Certificate-based authorization policy in a PKI environment. ACM Transactions on Information and System Security 6 (4). LBNL-51616.
M. R. Thompson and K. R. Jackson (2003). Security issues of grid management. In Resource Management for Grid Computing, edited by J. S. a. J. Nabrzyski, Kluwer Academic Press, Vol., p. LBNL-52141.
B. Tierney (2003). Using NetLogger and Web100 for TCP analysis. In First International Workshop on Protocols for Fast Long-Distance Networks, Geneva, Switzerland. LBNL-51776. http://www-library.lbl.gov/docs/LBNL/517/76/PDF/LBNL-51776.pdf
B. Tierney, D. Gunter, J. Lee, and M. Stoufer (2002). Monitoring data archives for grid environments. In IEEE Supercomputing, Baltimore, Maryland. LBNL-50216. http://www-library.lbl.gov/docs/LBNL/502/16/PDF/LBNL-50216.pdf
B. Tierney and J. Hollingsworth (2003). Instrumentation and Monitoring. In The Grid 2: Blueprint for a New Computing Infrastructure, edited by F. a. Kesselman, Elsevier, Vol. 2, p. LBNL-52496.
B. Tierney, J. Lee, D. Gunter, M. Stoufer, and T. Dunigan (2002). Improving distributed application performance using TCP instrumentation. LBNL-52590.
D. Trebotich, P. Colella, and G. Miller (2004). A stable and convergent scheme for viscoelastic flow in contraction channels. Journal of Computational Physics 205 (1), 315-342. LBNL-55880. http://www-library.lbl.gov/docs/LBNL/558/80/PDF/LBNL-55880.pdf
Y.-H. Tseng, D. E. Dietrich, and J. H. Ferziger (2005). Regional circulation of the Monterey Bay region: Hydrostatic versus nonhydrostatic modeling. Journal of Geophysical Research - Oceans 110 (C9), C09015. LBNL-58810.
C. Voemel, S. Tomov, L.-W. Wang, O. Marques, and J. Dongarra (2006). The use of bulk states to accelerate the band edge state calculation of a semiconductor quantum dot. Journal of Computational Physics. LBNL-60147.
L.-W. Wang (2004). Quantum transport calculations using periodic boundary conditions. Physical Review B 72, 45417. LBNL-55480. http://www-library.lbl.gov/docs/LBNL/554/80/PDF/LBNL-55480.pdf | http://www-library.lbl.gov/docs/LBNL/554/80/PS/LBNL-55480.ps
L.-W. Wang (2004). Effects of stacking faults on the electronic structures of quantum rods. Journal of Computational and Theoretical Nanoscience 1 (3), 298-302. LBNL-54813. http://www-library.lbl.gov/docs/LBNL/548/13/PDF/LBNL-54813.pdf
L.-W. Wang, M. Califano, A. Zunger, and A. Fraceschetti (2004). Pseudopotential theory of Auger processes in CdSe quantum dots. Physical Review Letter 9105 (5). LBNL-53508.
L.-W. Wang and J. Li (2004). First principle thousand atom quantum dot calculations. Physical Review B 69, 153302. LBNL-54811. http://www-library.lbl.gov/docs/LBNL/548/11/PDF/LBNL-54811.pdf
M. Wehner (2005). The impact of SciDAC on US climate change research and the IPCC AR4. In SciDAC (Scientific Discovery through Advanced Computing Program), San Francisco, CA, USA. LBNL-58622. http://www-library.lbl.gov/docs/LBNL/586/22/PDF/LBNL-58622.pdf
M. Wehner, L. Oliker, D. Parks, and W.-S. Wang (2004). High resolution atmospheric general circulation model simulations on vector and cache-based architectures. In SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, CA. LBNL-55346 Abs. http://www-library.lbl.gov/docs/LBNL/553/46/HTML/LBNL-55346_Abs.html
M. F. Wehner (2004). Predicted 21st century changes in seasonal extreme precipitation events in the parallel climate model. Journal of Climate. LBNL-53515.
J. Weinberg, A. Snavely, M. O. McCracken, and E. Strohmaier (2005). Quantifying Locality in the Memory Access Patterns of HPC Applications. In SC 2005, Seattle, WA. LBNL-58441. http://www-library.lbl.gov/docs/LBNL/584/41/PDF/LBNL-58441.pdf
S. Williams, J. Shalf, L. Oliker, P. Husbands, S. Kamil, and K. Yelick (2005). The Potential of the Cell Processor for Scientific Computing. In International Parallel & Distributed Processing Symposium - 2006, Rhodes Island, Greece. LBNL-59071. http://www-library.lbl.gov/docs/LBNL/590/71/PDF/LBNL-59071.pdf
S. A. Williams, A. S. Almgren, and E. G. Puckett (2006). On Using a Fast Multipole Method-based Poisson Solver in an Approximate Projection Method. LBNL-59934. http://www-library.lbl.gov/docs/LBNL/599/34/PDF/LBNL-59934.pdf
S. W. Williams, J. Shalf, L. Oliker, P. Husbands, and K. Yelick (2005). Dense and Sparse Matrix Operations on the Cell Processor. In 18th International Conference on Parallel and Distributed Computing Systems, Las Vegas, NV. LBNL-58253. http://www-library.lbl.gov/docs/LBNL/582/53/PDF/LBNL-58253.pdf
P. Worley, P. Roth, J. Candy, H. Shan, G. Mahinthakumar, S. Sreepathi, L. Carrington, T. Kaiser, A. Snavely, D. Reed, Y. Zhang, K. Huck, A. Malony, S. Shende, S. Moore, and F. Wolf (2005). Performance Analysis of GYRO: A Tool Evaluation. In SciDAC Scientific Discovery through Advanced Computing, 2005, San Francisco, CA. LBNL-58413. http://www-library.lbl.gov/docs/LBNL/584/13/PDF/LBNL-58413.pdf
J. Wright, S. Yon, and C. Pozrikidis (2005). Numerical studies of two-dimensional Faraday Oscillations of Inviscid Fluids. Journal of Fluid Mechanics 402, 1-32. LBNL-44867.
K. Wu (2005). FastBit: An Efficient Indexing Technology For Accelerating Data-Intensive Science. In SciDAC 2005, San Francisco, CA. LBNL-57982. http://www-library.lbl.gov/docs/LBNL/579/82/PDF/LBNL-57982.pdf
K. Wu, J. Gu, J. Lauret, A. M. Poskanzer, A. Shoshani, A. Sim, and W.-M. Zhang (2005). Grid Collector: Facilitating Efficient Selective Access from Data Grids. In International Supercomputer Conference, Heidelberg, Germany. LBNL-57677. http://www-library.lbl.gov/docs/LBNL/576/77/PDF/LBNL-57677.pdf
K. Wu, W. Koegler, J. Chen, and A. Shoshani (2003). Using bitmap index for interactive exploration of large datasets. In 15th International Conference on Scientific and Statistical Database Management, Cambridge, MA 02139. LBNL-52535. http://www-library.lbl.gov/docs/LBNL/525/35/PDF/LBNL-52535.pdf
K. Wu and E. Otoo (2005). A Simpler Proof Of The Average Case Complexity Of Union-Find With Path Compression. LBNL-57527. http://www-library.lbl.gov/docs/LBNL/575/27/PDF/LBNL-57527.pdf
K. Wu, E. Otoo, and A. Shoshani (2004). An efficient compression scheme for bitmap indices. ACM Tansaction on Database Systems. LBNL-49626. http://www-library.lbl.gov/docs/LBNL/496/26/PDF/LBNL-49626.pdf
K. Wu, E. Otoo, and A. Shoshani (2004). On the performance of bitmap indices for high cardinality attributes. In VLDB 2004: 30th International Conference on Very Large Data Bases, Toronto, Canada. LBNL-54673. http://www-library.lbl.gov/docs/LBNL/546/73/PDF/LBNL-54673.pdf
K. Wu, E. Otoo, and A. Shoshani (2005). Optimizing connected component labeling algorithms. In SPIE Medical Imaging 2005, edited by J. W. Doug Milam, Jonathan McConnell, Kerry Garvin, Lisa Polinder. Matt Novak, Dara Burrows, SPIE, San Diego, California, USA. LBNL-56864.
K. Wu, E. Otoo, and K. Suzuki (2005). Two Strategies to Speed up Connected Component Labeling Algorithms. IEEE Transactions on Pattern Analysis and Machine Intelligence. LBNL-59102.
K. Wu, E. J. Otoo, and A. Shoshani (2004). An efficient compression scheme for bitmap indices. LBNL-49626. http://www-library.lbl.gov/docs/LBNL/496/26/PDF/LBNL-49626.pdf
K. Wu, A. Shoshani, W.-M. Zhang, J. Lauret, and V. Perevoztchikov (2004). Grid Collector: Using an event catalog to speed up user analysis in distributed environment. In Computing in High Energy and Nuclear Physics (CHEP) 2004, Interlaken, Switzerland. LBNL-58092. http://www-library.lbl.gov/docs/LBNL/580/92/PDF/LBNL-58092.pdf
B. Xue, N. Max, and C. Siegerist (2005). Anisotropic Ellipsoidal Smoothing of Volume Data. In IEEE Visualization 2005, Minneapolis, MN. LBNL-57418. http://www-library.lbl.gov/docs/LBNL/574/18/PDF/LBNL-57418.pdf
C. Yang (2005). Solving Large-scale Eigenvalue Problems in SciDAC Applications. In SciDAC 2005, edited by T. Mezzacappa, Institute of Physics Publishing, San Francisco, CA. LBNL-58339. http://www-library.lbl.gov/docs/LBNL/583/39/PDF/LBNL-58339.pdf
C. Yang, W. Gao, Z. Bai, X. Li, L. Lee, P. Husbands, and E. Ng (2004). An algebraic sub-structuring method for large-scale eigenvalue calculation. Society for Industrial and Applied Mathematics: Journal on Matrix Analysis and Applications. LBNL-55050.
C. Yang, W. Gao, Z. Bai, X. Li, L.-Q. Lee, P. Husbands, and E. G. Ng (2004). Algebraic sub-structuring for electromagnetic applications. In PARA'04 Workshop on State-of-the-art in Scientific Computing, Copenhagen, Denmark. LBNL-56325. http://www-library.lbl.gov/docs/LBNL/563/25/PDF/LBNL-56325.pdf
C. Yang, J. Meza, and L.-W. Wang (2005). A Constrained Optimization Algorithm for Total Energy Minimization in Electronic Structure Calculation. Journal of Computational Physics. LBNL-57434.
Q. Yang and B. Parvin (2003). Harmonic cut and regularized centroid transform for localization of subcellular structures. IEEE Transaction on Biomedical Engineeing. LBNL-51849.
Q. Yang and B. Parvin (2003). High resolution reconstruction of sparse data from dense low resolution spatio-temporal data. IEEE Transaction on Image Processing. LBNL-52152.
Q. Yang and B. Parvin (2004). Perceptual Organization of Radial Symmetries. In Computer Vision and Pattern Recognition, IEEE, Baltimore, MD. LBNL-54728.
Q. Yang, B. Parvin, and M. H. Barcellos-Hoff (2004). Localization of saliency through iterative voting. In 17th International Conference of Pattern Recognition, IEEE, Cambridge, UK. LBNL-55075.
W.-S. Yang and C. Ding (2003). ZioLib: A parallel I/O library. LBNL-53521. http://www-library.lbl.gov/docs/LBNL/535/21/PDF/LBNL-53521.pdf | http://www-library.lbl.gov/docs/LBNL/535/21/PS/LBNL-53521.ps
V. Yegneswaran, P. Barford, and V. Paxson (2005). Using honeynets for internet situational awareness. In ACM SIGCOMM HotNets, Baltimore, Maryland. LBNL-60920.
K. Yelick, S. Kamil, W. T. Kramer, L. Oliker, J. Shalf, H. Shan, and E. Strohmaier (2005). Science Driven Supercomputing Architectures: Analyzing Architectural Bottlenecks with Applications and Benchmark Probes. LBNL-58914. http://www-library.lbl.gov/docs/LBNL/589/14/PDF/LBNL-58914.pdf
J.-D. Yu, S. Sakai, and J. Sethian (2005). A coupled quadrilateral grid level set projection method applied to ink jet simulation. Journal of Computational Physics 205 (1), 227-51. LBNL-52000.
Y. Zhang, X. S. Li, and O. Marques (2005). Towards an Automatic and Application-Based Eigensolver Selection. In LACSI Symposium 2005, Santa Fe, NM. LBNL-58949. http://www-library.lbl.gov/docs/LBNL/589/49/PDF/LBNL-58949.pdf
Z. Zhao, L.-W. Wang, and J. Meza (2006). Motif based Hessian matrix for ab initio geometry optimization of nanostructures. Rapid communication of Physical Review B. LBNL-59974.
M. Zingale, S. E. Woosley, C. A. Rendleman, M. S. Day, and J. B. Bell (2005). Three-dimensional numerical simulations of Rayleigh-Taylor unstable flames in type Ia supernovae. Astrophysical Journal 632 (2pt1), 1021-34. LBNL-56966. http://www-library.lbl.gov/docs/LBNL/569/66/PDF/LBNL-56966.pdf
|
