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Abstracts of these publications can be accessed through Berkeley Lab's searchable report database. If there is no link to the full text of the report you need, there are several ways of obtaining the document:
You can also view the publications below sorted by date.
Ackermann, M. and A. Collaboration (2004). Amanda: status and latest results. In 39th Rencontres de Moriond on Electroweak Interactions and Unified Theories, La Thuile, Aosta Valley, Italy. LBNL-55611.
Adelmann, A., R. D. Ryne, J. M. Shalf, and C. Siegerist (2005). From Visualisation to Data Mining with Large Data Sets. In Particle Accelerator Conference 2005, Knoxville, Tennessee. LBNL-57603. http://www-library.lbl.gov/docs/LBNL/576/03/PDF/LBNL-57603.pdf
Adelmann, A., R. D. Ryne, C. Siegerist, and J. M. Shalf (2005). H5Part: A Portable High Performance Parallel Data Interface for Particle Simulations. In Particle Accelerator Conference, edited by C. Horak, IEEE, Knoxville, TN. LBNL-57607. http://www-library.lbl.gov/docs/LBNL/576/07/PDF/LBNL-57607_Ext_Abs.pdf
Adiga, U., A. Idica, R. F. Gonzalez, and C. Ortiz de Solorzano (2005). An efficient approach to segmentation of cell-nuclei in tissue images: application to breast tissue blocks. LBNL-54477.
Adiga, U., R. Malladi, R. Gonzalez, and C. Ortiz de Solorzano (2006). A robust methodology for the analysis of multi-spectral images of breast cancer tissue blocks. to be submitted for publication. LBNL-60272.
Agarwal, D., M. Lorch, M. Thompson, and M. Perry (2003). A new security model for collaborative environments. In Workshop on Advanced Collaborative Environments, ANL, Seattle, WA. LBNL-52894. http://www-library.lbl.gov/docs/LBNL/528/94/PDF/LBNL-52894.pdf
Agarwal, D., G. Olson, and J. Olson (2002). Collaboration tools for the global accelerator network: Workshop Report. LBNL-53253. http://www-library.lbl.gov/docs/LBNL/532/53/PDF/LBNL-53253.pdf
Agarwal, D. A. and K. Berket (2003). Supporting Dynamic Ad hoc Collaboration Capabilities. In 2003 Conference for Computing in High Energy and Nuclear Physics, La Jolla, CA. LBNL-53355. http://www-library.lbl.gov/docs/LBNL/533/55/PDF/LBNL-53355.pdf
Agarwal, P. K., R. A. Alexander, E. Apra, S. Balay, A. S. Bland, J. Colgan, E. F. D'Azevedo, J. J. Dongarra, T. H. Dunigan Jr., M. R. Fahey, R. A. Fahey, A. Geist, M. Gordon, R. J. Harrison, D. Kaushik, M. Krishnakumar, P. Luszczek, A. Mezzacappa, J. A. Nichols, J. Nieplocha, L. Oliker, T. Packwood, M. S. Pindzola, T. C. Schulthess, J. S. Vetter, J. B. White III, T. L. Windus, P. H. Worley, T. Zacharia, and T. Zacharia (2004). ORNL Cray X1 evaluation status report. In 46th Cray User Group Conference, Knoxville, TN. LBNL-55302. http://www-library.lbl.gov/docs/LBNL/553/02/PDF/LBNL-55302.pdf
Ahrens, J. and I. Collaboration (2004). Status of the icecube neutrino observatory. In 2nd VERITAS Symposium on TeV Astrophysics of Extragalactic Sources, Chicago, 48. LBNL-55612.
Allen, G., K. Davis, K. N. Dolkas, N. D. Doulamis, T. Goodale, T. Kielmann, A. Merzky, J. Nabrzyski, J. Pukacki, T. Radke, M. Russell, E. Seidel, J. Shalf, and I. Taylor (2003). Enabling applications on the Grid - A Gridlab overview. International Journal on High Performance Computing Applications 17 (4). LBNL-54107.
Almgren, A. S., J. B. Bell, C. A. Rendleman, and M. Zingale (2005). Low Mach Number Modeling of Type Ia Supernovae. Astrophysical Journal 637, 922-36. LBNL-58673. http://www-library.lbl.gov/docs/LBNL/586/73/PDF/LBNL-58673.pdf
Almgren, A. S., J. B. Bell, C. A. Rendleman, and M. Zingale (2006). Low Mach Number Modeling of Type Ia Supernovae. II. Energy Evolution. Astrophysical Journal. LBNL-58673 Pt.II.
Amestoy, P., X. S. Li, and S. Pralet (2005). Unsymmetric ordering using a constrained Markowitz scheme. SIAM J. Matrix Analysis and Applications. LBNL-56861.
Amestoy, P. R., X. S. Li, and E. G. Eg (2003). Diagonal Markowitz scheme with local symmetrization. SIAM J. Matrix Anal. Appl. LBNL-53854.
Bai, Z. and C. Yang (2006). From Self-consistency to SOAR: Solving Large-scale Nonlinear Eigenvalue Problem. SIAM News (April). LBNL-60645.
Bailey, D. H. and J. M. Borwein (2005). Future Prospects for Computer-Assisted Mathematics. Notices of the Canadian Mathematical Society 37 (8), 2-6. LBNL-59060. http://www-library.lbl.gov/docs/LBNL/590/60/PDF/LBNL-59060.pdf
Bailey, D. H., J. M. Borwein, and D. M. Bradley (2005). Experimental Determination of Apery-Like Identities for Zeta(2n+2). Experimental Mathematics. LBNL-57581.
Barad, M. and P. Colella (2004). A fourth order accurate adaptive mesh refinement method for poisson's equation. Journal of Computational Physics 209 (1), 1-18. LBNL-56190. http://www-library.lbl.gov/docs/LBNL/561/90/PDF/LBNL-56190.pdf
Barenblatt, G. I. (2005). Applied mechanics: An age-old science perpetually in rebirth. In ASME International Mechanical Engineering Congress, Orlando, FL. LBNL-58874.
Barenblatt, G. I., M. Bertsch, and L. Giacomelli (2006). Stead and quasi-steady thin viscous flows near the edge of a solid surface. to be submitted for publication. LBNL-60275.
Barenblatt, G. I. and A. J. Chorin (2005). A mathematical model for the scaling of turbulence. Proceedings of the National Academy of Sciences 101 (42), 15023-15026. LBNL-57904.
Barenblatt, G. I., A. J. Chorin, and V. M. Prostokishin (2005). A note concerning the Lighthill "sandwich model" of tropical cyclones. In ASME International Mechanical Engineering Congress, Orlando, FL. LBNL-57842.
Bargmeyer, B. E. (2006). Common sense, common logic. ISO Focus 3 (3), 24-26. LBNL-59983.
Baron, E., P. E. Nugent, D. Branch, and P. H. Hauschildt (2004). Type IIP supernovae as cosmological probes: A SEAM distance to SN 1999em. Astrophysical Journal 616, 91. LBNL-56193. http://www-library.lbl.gov/docs/LBNL/561/93/PDF/LBNL-56193.pdf | http://www-library.lbl.gov/docs/LBNL/561/93/PS/LBNL-56193.ps
Bartolome, F., J. Herrero-Albillos, L. Garcia, A. Young, T. Funk, and E. Arenholz (2005). Antiferromagnetic arrangement in paramagnetic ErCo2. In 50th Annual Conference on Magnetism and Magnetic Materials, San Jose, California, USA. LBNL-58515. http://www-library.lbl.gov/docs/LBNL/585/15/PDF/LBNL-58515_Abs.pdf
Bell, C., D. Bonachea, Y. Cote, J. Duell, P. Hargrove, P. Husbands, C. Iancu, M. Welcome, and K. Yelick (2003). An evaluation of current high-performance networks. In 17th International Parallel and Distributed Processing Symposium (IPDPS), 2003, Nice, France. LBNL-52103. http://www-library.lbl.gov/docs/LBNL/521/03/PDF/LBNL-52103.pdf
Bell, C., D. Bonachea, R. Nishtala, and K. Yelick (2005). Optimizing Bandwidth Limited Problems Using One-Sided Communication and Overlap. In IPDPS 2006, Rhodes Island, Greece. LBNL-59207. http://www-library.lbl.gov/docs/LBNL/592/07/PDF/LBNL-59207.pdf
Bell, J. B. (2004). AMR for low Mach number reacting flow. In Chicago Workshop on Adaptive Mesh Refinement Methods, Springer Verlag, Chicago, Illinois. LBNL-54351. http://www-library.lbl.gov/docs/LBNL/543/51/PDF/LBNL-54351.pdf
Bell, J. B., M. Day, V. Beckner, C. Rendleman, A. L. Kuhl, and P. Neuwald (2005). Numerical Simulation of Shock-Dispersed Fuel Charges. In HPCMP Users Group Conference 2005, IEEE, Nashville, TN. LBNL-58707. http://www-library.lbl.gov/docs/LBNL/587/07/PDF/LBNL-58707.pdf
Bell, J. B., M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Stochastic algorithms for the analysis of numerical flame simulations. Journal of Computational Physics 202 (1), 262-80. LBNL-49326. http://www-library.lbl.gov/docs/LBNL/493/26/PDF/LBNL-49326_Journal.pdf
Bell, J. B., M. S. Day, J. F. Grcar, and M. J. Lijewski (2003). Analysis of carbon chemistry in numerical simulations of vortex flame interaction. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. LBNL-52168. http://www-library.lbl.gov/docs/LBNL/521/68/PDF/LBNL-52168.pdf
Bell, J. B., M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Active control for turbulent premixed flame simulations. In Western States Section of the Combustion Institute 2004 Spring Meeting, Davis, CA. LBNL-54766. http://www-library.lbl.gov/docs/LBNL/547/66/PDF/LBNL-54766.pdf
Bell, J. B., M. S. Day, J. F. Grcar, and M. J. Lijewski (2005). Active Control for Statistically Stationary Premixed Flame Simulations. Communications in Applied Mathematics and Computational Science. LBNL-58751.
Bell, J. B., M. S. Day, J. F. Grcar, M. J. Lijewski, M. R. Johnson, R. K. Cheng, and I. G. Shepherd (2003). Numerical simulation of a premixed turbulent V-flame. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Institute of Dynamics of Explosions and Reactive Systems, Seattle, U.S, Hakone, Kanagawa, Japan. LBNL-52166. http://www-library.lbl.gov/docs/LBNL/521/66/PDF/LBNL-52166.pdf
Bell, J. B., M. S. Day, and A. Kuhl (2003). Numerical simulations of shock-induced mixing and combustion. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. LBNL-52167. http://www-library.lbl.gov/docs/LBNL/521/67/PDF/LBNL-52167.pdf
Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley, and M. Zingale (2003). Direct numerical simulations of type Ia supernovae flames I: The landau-darrieus instability. Astrophysical Journal. LBNL-54088.
Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley, and M. Zingale (2004). Direct numerical simulations of type Ia supernovae flames II: The rayleigh-taylor instability. Astrophysical Journal 608 (pt.1), 883-906. LBNL-54300. http://www-library.lbl.gov/docs/LBNL/543/00/PDF/LBNL-54300.pdf
Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley, and M. A. Zingale (2003). Adaptive low Mach number simulations of nuclear flame microphysics. Journal of Computational Physics. LBNL-52395.
Bell, J. B., M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, V. E. Beckner, M. J. Lijewski, and J. F. Grcar (2003). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the Combustion Institute. LBNL-54198.
Bell, J. B., M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, J. F. Grcar, V. E. Beckner, and M. J. Lijewski (2005). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the National Academy of Sciences 102 (29), 10006-11. LBNL-54198. http://www-library.lbl.gov/docs/LBNL/541/98/PDF/LBNL-54198_Journal.pdf
Berket, K. and D. Agarwal (2003). Enabling secure Ad-hoc collaboration. In Workshop on Advanced Collaborative Environments, Seattle, WA. LBNL-52895.
Bethel, E. W. (2003). Interoperability of Visualization Software and Data Models is Not an Achievable Goal. In IEEE Visaulization 2003, Seattle, WA. LBNL-53368. http://www-library.lbl.gov/docs/LBNL/533/68/PDF/LBNL-53368_Abs.pdf
Bethel, E. W. (2004). Infrastructure for Scalable and Interoperable Visualization and Analysis Software Technology. LBNL/PUB-5510. http://www-library.lbl.gov/docs/PUB/5510/PDF/PUB-5510.pdf
Bethel, E. W., R. Frank, S. Fulcomer, C. Hansen, K. Joy, J. Kohl, and D. Middleton (2003). Visual Data Exploration and Analysis - Report on the Visualization Breakout Session of the SCaLeS Workshop. LBNL/PUB-886. http://www-library.lbl.gov/docs/PUB/886/PDF/PUB-886.pdf
Bethel, E. W., G. Humphreys, B. Paul, and J. D. Brederson (2003). Sort-First, Distributed Memory Parallel Visualization and Rendering. In 2003 Symposium on Parallel Visualization and Graphics, IEEE Visualization, Seattle, WA. LBNL-52998. http://www-library.lbl.gov/docs/LBNL/529/98/PDF/LBNL-52998.pdf
Bethel, E. W., C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies. In SciDAC 2006 Conference, edited by unknown, Institute of Physics Publishing, Denver, CO, unknown. LBNL-60413.
Bethel, E. W., C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). Meet the Proposed Visualization and Analytics Center for Enabling Technologies. LBNL-60478. http://www-library.lbl.gov/docs/LBNL/604/78/PDF/LBNL-60478_Poster.pdf
Bethel, E. W., J. Shalf, and C. Siegerist (2004). Remote and distributed high performance scientific visualization - Terabytes to insights. LBNL/PUB-912. http://www-library.lbl.gov/docs/PUB/912/PDF/PUB-912.pdf
Bethel, E. W. and J. M. Shalf (2005). Algorithms, Frameworks and Toolsets for High Performance, Remote and Distributed Visualization. LBNL-58171. http://www-library.lbl.gov/docs/LBNL/581/71/PDF/LBNL-58171.pdf
Bethel, W. and J. Shalf (2003). Consuming Network Bandwidth with Visapult. In Visualization Handbook, edited by C. J. a. C. Hansen, Academic Press, Vol. N/A, p. LBNL-52171. http://www-library.lbl.gov/docs/LBNL/521/71/PDF/LBNL-52171.pdf
Bethel, W., C. Siegerist, J. Shalf, P. Shetty, T. J. Jankun-Kelly, O. Kreylos, and K.-L. Ma (2003). VisPortal: Deploying grid-enabled visualization tools through a web-portal interface. In Workshop on Advanced Collaborative Environments ( http://www-unix.mcs.anl.gov/fl/events/wace2003/), edited by G. C. A. Johnson, WACE, Seattle Washington. LBNL-52940. http://www-library.lbl.gov/docs/LBNL/529/40/PDF/LBNL-52940.pdf
Biswas, R., L. Oliker, and H. Shan (2003). Parallel computing strategies for irregular algorithms. In Annual review of scalable computing, edited by Y. C. Kwong, Singapore University Press, World Scientific, Vol. 5, p. LBNL-53115. http://www-library.lbl.gov/docs/LBNL/531/15/PDF/LBNL-53115.pdf
Bold, K., C. Edwards, J. Guckenheimer, G. Sabyasachi, K. Hoffman, J. Hubbard, R. Oliva, and W. Weckesser. The forced Van der PoL Equation II: Cannards in the reduced system. LBNL-53694.
Bonachea, D. (2004). Proposal for extending the UPC memory copy library functions and suppo rting extensions to GASNet, Version 1.0. LBNL-56495. http://www-library.lbl.gov/docs/LBNL/564/95/PDF/LBNL-56495.pdf
Borrill, J., J. Carter, L. Oliker, D. Skinner, and R. Biswas (2005). Integrated Performance Monitoring of a Cosmology Application on Leading HEC Platforms. In the 2005 International Conference on Parallel Processing (ICPP-05), edited by L. N. Olav Lynse, IEEE Computer Society, Univ. of Oslo, Norway, 00. LBNL-58001. http://www-library.lbl.gov/docs/LBNL/580/01/PDF/LBNL-58001.pdf
Bowman, I., J. Shalf, K.-L. Ma, and W. Bethel (2004). Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment. LBNL-56977. http://www-library.lbl.gov/docs/LBNL/569/77/PDF/LBNL-56977.pdf
Brady, V., P. Concus, and R. Finn (2004). Computational investigation of unusual behavior in certain capillary tubes. Microgravity Science and Technology XV (4), 31-38. LBNL-54723. http://www-library.lbl.gov/docs/LBNL/547/23/PDF/LBNL-54723.pdf
Bresson, E., O. Chevassut, and D. Pointcheval (2003). New Security Results on Encrypted Key Exchange. In International Workshop on Practice and Theory in Public Key Cryptographyc (PKC), Singapore. LBNL-53099. http://www-library.lbl.gov/docs/LBNL/530/99/PDF/LBNL-53099.pdf | http://www-library.lbl.gov/docs/LBNL/530/99/PS/LBNL-53099.ps
Butler, G. F., R. C. Lee, and M. L. Welcome (2003). The global unified parallel file system (GUPFS) project: FY 2002 activities and results. LBNL-52456. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456.pdf
Canning, A., B. Ujfalussy, T. C. Schulthess, X. G. Zhang, W. A. Shelton, D. M. C. Nicholson, G. M. Stocks, Y. Wang, and T. Dirks. Parallel multi-teraflops studies of the magnetic structure of FeMn alloys. LBNL-53524.
Carter, J. and L. Oliker (2006). Performance Evaluation of Lattice-Boltzmann Magnetohydrodynamics Simulations on Modern Parallel Vector Systems. In 2nd Teraflop Workshop, edited by M. Resch, Springer, Stuttgart, Germany. LBNL-59340. http://www-library.lbl.gov/docs/LBNL/593/40/PDF/LBNL-59340.pdf
Carter, J., L. Oliker, and J. Shalf (2005). Performance Evaluation of Plasma Physics and Astrophysics Applications on Modern Parallel Vector Systems. In VECPAR'06 7th International Conference on High Performance Computing for Computational Science, edited by J. D. M. Daydé, V. Hernandez and J.M.L.M. Palma, Springer, Rio de Janeiro, Brazil. LBNL-58004.
Carter, J., M. Soe, L. Oliker, Y. Tsuda, G. Vahala, L. Vahala, and A. Macnab (2005). Magnetohydrodynamic Turbulence Simulations on the Earth Simulator Using the Lattice Boltzmann Method. In Conference on High Performance Computing, Networking and Storage, edited by B. B. Jeff Kuehn, IEEE Computer Society Press, Seattle, WA. LBNL-58002. http://www-library.lbl.gov/docs/LBNL/580/02/PDF/LBNL-58002.pdf | http://www-library.lbl.gov/docs/LBNL/580/02/SRC/LBNL-58002.doc
Cartoixa, X. and L.-W. Wang (2005). Microscopic dielectric response functions in semiconductor quantum dots. Physical Review Letter 94, 236804(1-4). LBNL-57948.
Chen, J., I. Yoon, and E. W. Bethel (2005). Interactive, Internet Delivery of Scientific Visualization via Structured, Prerendered Multiresolution Imagery. In IEEE Visualization 2005, Minneapolis, MN. LBNL-57528. http://www-library.lbl.gov/docs/LBNL/575/28/PDF/LBNL-57528.pdf
Chen, W., C. Iancu, and K. Yelick (2005). Communication Optimizations for Fine-Grained UPC Applications. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. LBNL-58382. http://www-library.lbl.gov/docs/LBNL/583/82/PDF/LBNL-58382.pdf
Chorin, A. J., O. H. Hald, and R. Kupferman (2005). Optimal prediction with memory. Physica D 166, 239-257. LBNL-48661.
Chorin, A. J. and P. Krause (2005). Dimensional reduction for a Bayesian filter. Proceedings of the National Academy of Sciences 101 (42), 15013-15017. LBNL-60019.
Chorin, A. J. and P. Stinis (2005). Problem reduction, renormalization and memory. Communications and Applied Mathematicsl Computing Sciences 1, 1-27. LBNL-60029.
Co, C. S., A. Friedman, D. P. Grote, J.-L. Vay, E. W. Bethel, and K. I. Joy (2004). Interactive methods for exploring particle simulation data. In IEEE Visualization 2004, Austin, TX. LBNL-55353. http://www-library.lbl.gov/docs/LBNL/553/53/PDF/LBNL-55353.pdf
Colella, P., A. Friedman, D. P. Grote, P. McCorquodale, B. Van Straalen, and J.-L. Vay. Mesh refinement for particle-in-cell plasma simulations: Applications to and benefits for heavy ion fusion. LBNL-50871.
Colella, P., D. T. Graves, B. J. Keen, and D. Modiano (2004). A cartesian grid embedded boundary method for hyperbolic conservation laws. Journal of Computational Physics 51 (12), 1183-86. LBNL-56420. http://www-library.lbl.gov/docs/LBNL/564/20/PDF/LBNL-56420.pdf
Colella, P., D. T. Graves, T. J. Ligocki, D. Martin, and B. Van Straalen. Amr godunov unsplit algorithm and implementation. LBNL-53693.
Colella, P., D. T. Graves, T. J. Ligocki, D. Martin, and B. Van Straalen. Mfchombo software package for cartesian grid, multifluid applications. LBNL-53715.
Colella, P., D. T. Graves, T. J. Ligocki, D. Modiano, and B. Van Straalen. Ebchombo software package for cartesian grid, embedded boundary applications. LBNL-53712.
Colella, P., D. T. Graves, T. J. Ligocki, D. Modiano, and B. Van Straalen. Ebamrtools: ebchombo's adaptive refinement library. LBNL-53713.
Colella, P., D. T. Graves, T. J. Ligocki, and B. Van Straalen. Ebamrgodunov. LBNL-53714.
Colella, P. and D. Martin. Self-gravitating AMR algorithm specification. LBNL-53689.
Colella, P. and D. Martin. Multifluid algorithm specification. LBNL-53690.
Colella, P. and D. Martin. Software design for particles in incompressible flow. LBNL-53691.
Colella, P. and D. Martin. Incompressible Navier-Stokes with particles algorithm design document. LBNL-53692.
Colella, P. and T. Wen (2005). Adaptive mesh refinement in titanium. In 19th International Parallel and Distributed Processing Symposium, IEEE, Denver, CO. LBNL-56992. http://www-library.lbl.gov/docs/LBNL/569/92/PDF/LBNL-56992.pdf
Cong, G., M. Esser, B. Parvin, and G. Bebis (2004). Shape Metamorphism Using p-Laplacian Equation. In International Conference on Pattern Recognition, Oxford England. LBNL-55031. http://www-library.lbl.gov/docs/LBNL/550/31/PDF/LBNL-55031.pdf
Consortium, U. (2005). UPC Language Specifications V1.2. LBNL-59208. http://www-library.lbl.gov/docs/LBNL/592/08/PDF/LBNL-59208.pdf
Covey, C., K. M. AcutaRao, and P. Gleckler. Coupled ocean-atmosphere climate simulations compared with simulations using prescribed sea surface temperatures. LBNL-53518.
Craig, A. P., R. L. Jacob, B. Kauffman, T. Bettge, J. Larson, E. Ong, C. Ding, and Y. He (2005). Cpl6: The New Extensible, High-Performance Parallel Coupler for the Community Climate System Model. International Journal of High Performance Computing Applications 19 (3), 309-27. LBNL-58387. http://www-library.lbl.gov/docs/LBNL/583/87/PDF/LBNL-58387.pdf
Crawford, C., O. Kreylos, B. Hamann, and S. Crivelli (2005). Visualization of Force Fields in Protein Structure Prediction. In IEEE Visualization 2005, Minneapolis, NM. LBNL-58169. http://www-library.lbl.gov/docs/LBNL/581/69/PDF/LBNL-58169.pdf
Crivelli, S., O. Kreylos, N. Max, B. Hamann, and W. Bethel (2004). ProteinShop: A tool for interactive protein manipulation and steering. JCAMD. LBNL-53731.
Day, M. S., J. B. Bell, A. S. Almgren, V. E. Beckner, M. J. Lijewski, R. Cheng, I. Shepherd, and M. Johnson (2003). Numerical simulation of premixed turbulent methane combustion. In Second M.I.T. Conference on Computational Fluid and Solid Mechanics, edited by K. J. Bathe, Elsevier Science, Albuquerque, NM. LBNL-53655. http://www-library.lbl.gov/docs/LBNL/536/55/PDF/LBNL-53655.pdf
Day, M. S., J. B. Bell, J. F. Grcar, and V. E. Beckner (2005). Numerical control of 3d turbulent premixed flame simulations. In 20th International Colloquium on the Dynamics of Explosions and Reactive Systems, McGill University, Montreal, Canada. LBNL-56882. http://www-library.lbl.gov/docs/LBNL/568/82/PDF/LBNL-56882_Ext_Abs.pdf
Day, M. S., J. B. Bell, M. J. Lijewski, M. Johnson, R. K. Cheng, and I. G. Shepherd (2003). Adaptive low mach number simulations of a premixed turbulent laboratory burner. In The Fall 2003 Meeting of the Western States Section/The Combustion Institute, UCLA Campus (UCLA Faculty Center). LBNL-53986. http://www-library.lbl.gov/docs/LBNL/539/86/PDF/LBNL-53986.pdf
Demchenko, D. O. and L.-W. Wang (2005). Optical transitions and nature of Stokes shift in spherical CdS quantum dots. Physical Review B. LBNL-59231.
Demmel, J., Y. Hida, W. Kahan, X. S. Li, S. Mukherjee, and E. J. Riedy (2005). Error bounds from extra precise iterative refinement. ACM Trans. on Mathematical Software. LBNL-56965.
Deschamps, T., R. Malladi, and I. Ravve (2005). Fast evolution of image manifolds and application to filtering and segmentation in 3D medical images. IEEE Transactions on Visualization and Computer Graphics 10, 525-535. LBNL-54479.
Ding, C. and X. He. Principal component analysis and K-means clustering. LBNL-52983.
Ding, C., X. He, R. F. Meraz, and S. R. Holbrook. A unified representation of multi-protein complex data for modeling interaction networks. LBNL-52984.
Ding, C., X. He, R. F. Meraz, and S. R. Holbrook (2004). A unified representation of multi-protein complex data for modelling interaction networks. In RECOMB 2004 (Research in Computational Molecular Biology), San Diego, CA. LBNL-54915.
Ding, C., X. He, H. D. Simon, and R. Jin (2005). On the Equivalence of Nonnegative Matrix Factorization and K-means - Spectral Clustering. Journal of Machine Learning Research. LBNL-59622.
Ding, C., X. He, H. Zha, M. Gu, and H. Simon. A MinMaxCut spectral method for data clustering and graph partitioning. LBNL-54111.
Ding, C. H. X. K-nearest-neighnor consistency in data clustering. LBNL-52982.
Donde, V., V. Lopez, B. Lesieutre, A. Pinar, C. Yang, and J. Meza (2005). Identification of Severe Multiple Contingencies in Electric Power Networks. In North American Power Symposium, Ames, IA. LBNL-57994.
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Drummond, L. A. (2005). The Forthcoming Petascale Systems Era: Got Tools? In SALISHAN CONFERENCE ON HIGH SPEED COMPUTING, Salishan, OR. LBNL-57099. http://www-library.lbl.gov/docs/LBNL/570/99/PDF/LBNL-57099_Abs.pdf
Drummond, L. A., V. Hernandez, O. Marques, J. E. Roman, and V. Vidal (2004). A Survey of High-Quality Computational Libraries and their Impact in Science and Engineering Applications. In High Performance Computing for Computational Science, VECPAR 2004, edited by J. D. M. Dayde, V. Hernandez and J. Palma, Springer-Verlag, Valencia, Spain, 3402. LBNL-56260. http://www-library.lbl.gov/docs/LBNL/562/60/PDF/LBNL-56260_Conf.pdf
Drummond, L. A. and O. A. Marques (2002). Acts -- A collection of high performing software tools for scientific co mputing. In Tenth ECMWF Workshop on the Use of HPC in Meteorology, edited by W. Z. N. Kreitz, World Scientific, European Centre for Medium-Range Weather Forecasts,Reading, England. LBNL-53897.
Drummond, L. A. and O. A. Marques (2005). An Overview of the Advanced CompuTational Software (ACTS) Collection. ACM Transactions on Mathematical Software 31 (3), 282-301. LBNL-58710. http://www-library.lbl.gov/docs/LBNL/587/10/PDF/LBNL-58710.pdf
Drummond, L. A., O. A. Marques, and G. V. Wilson (2003). An infrastructure for the creation of high end scientific and enginee ring software tools and applications. LBNL/PUB-3176. http://www-library.lbl.gov/docs/PUB/3176/PDF/PUB-3176.pdf
Drummond, T. and O. Marques (2002). The ACTS collection robust and high-performance tools for scientific computing: Guidelines for tool inclusion and retirement. LBNL/PUB-3175. http://www-library.lbl.gov/docs/PUB/3175/PDF/PUB-3175.pdf
Duffy, P. B., B. Govindasamy, J. Milovich, and Taylor. High resolution simulations of global climate, Part 1: present climate. LBNL-53517.
Emmanuel, B., C. Olivier, E. Abdelilah, and P. David (2003). Mutual authentication and group key agreement for low-power mobile devices. In IEEE Conference on Mobile and Wireless Communication Networks, Singapore. LBNL-52542.
Fleischer, L. K., B. Hendrickson, and A. Pinar (2003). A divide-and-conquer algorithm for identifying strongly connected components. Networks: An International Journal. LBNL-51867.
Foley, R. J., A. V. Filippenko, D. C. Leonard, A. G. Riess, P. Nugent, and S. Perlmutter (2005). A Definitive Measurement of Time Dilation in the Spectral Evolution of the Moderate-Redshift Type Ia Supernova 1997ex. The Astrophysical Journal 626, 11-14. LBNL-57860.
Fynbo, J. P. U., J. Gorosabel, A. Smette, A. Fruchter, J. Hjorth, K. Pedersen, A. Levan, I. Burud, K. Sahu, P. M. Vreeswijk, E. Bergeron, C. Kouveliotou, N. Tanvir, S. E. Thorsett, R. A. M. J. Wijers, A. Castro-Tirado, P. Jakobsson, J. M. Castro Ceron, P. Garnavich, S. T. Holland, P. Moller, P. Nugent, E. Pian, J. Rhoads, D. Watson, and S. Woosley (2004). On the afterglow and host galaxy of GRB 021004: A comprehensive study with the Hubble Space Telescope. Astrophysical Journal 633 (1pt1), 317-27. LBNL-56729. http://www-library.lbl.gov/docs/LBNL/567/29/PDF/LBNL-56729.pdf
Gao, W., X. S. Li, C. Yang, and Z. Bai (2006). An Implementation and Evaluation of the AMLS Method for Sparse Eigenvalue Problems. ACM Trans. Math. Software. LBNL-57438.
Gatti-Bono, C. and P. Colella (2005). An Anelastic Allspeed Projection Method for Gravitationally Stratified Flows. Journal of Computational Physics. LBNL-57158.
Gatti-Bono, C. and C. Phillip (2005). A Filtering Method For Gravitationally Stratified Flows. Monthly Weather Review. LBNL-57161.
Gillet, N. P., M. F. Wehner, and S. F. B. Tett. Testing the linearity of the response to combined greenhouse gas and sulfate aerosol forcing. LBNL-53503.
Givon, D., O. H. Hald, and R. Kupferman (2004). Existence proof for orthogonal dynamics and the Mori-Zwanzig formalism. Israel Journal of Mathematics 145, 221-241. LBNL-52136.
Givon, D., R. Kupferman, and A. Stuart (2004). Extracting macroscopic dynamics: Model problems and algorithms. Nonlinearity 17, R55-R127. LBNL-54463.
Gosink, L., J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2005). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets Using Fast Bitmap Indices. In 2005 HDF Workshop, San Francisco, CA. LBNL-59602. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602_Ext_Abs.pdf
Gosink, L., J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2006). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. LBNL-59602. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602.pdf
Grcar, J. F. (2003). Optimal sensitivity analysis of linear least squares. SIAM Review. LBNL-52434.
Grcar, J. F. (2004). John von Neumann Birthday Centennial. SIAM News 38 (2), 1. LBNL-57074. http://www-library.lbl.gov/docs/LBNL/570/74/PDF/LBNL-57074.pdf
Grcar, J. F., M. S. Day, and J. B. Bell (2003). Conditional and opposed reaction path diagrams for the analysis of fluid-chemistry interactions. In 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Japan. LBNL-52164. http://www-library.lbl.gov/docs/LBNL/521/64/PDF/LBNL-52164.pdf
Grcar, J. F., M. S. Day, and J. B. Bell (2004). A taxonomy of integral reaction path analysis. Combustion Theory and Modelling. LBNL-56772.
Grcar, J. F., P. Glarborg, J. B. Bell, M. S. Day, A. Loren, and A. D. Jensen (2003). Effects of mixing on ammonia oxidation in combustion environments at intermediate temperatures. Proceedings of the Combustion Institute. LBNL-54187. http://www-library.lbl.gov/docs/LBNL/541/87/PDF/LBNL-54187.pdf
Greenough, J. A., B. R. de Supinski, R. K. Yates, C. A. Rendleman, D. Skinner, V. Beckner, M. Lijewski, J. Bell, and J. C. Sexton (2005). Performance of a Block Structured, Hierarchical Adaptive Mesh Refinement Code on the 64k Node IBM BlueGene/L Computer. In SC|05 International Conference for High Performance Computing Networking and Storage, Seattle, WA. LBNL-57500. http://www-library.lbl.gov/docs/LBNL/575/00/PDF/LBNL-57500.pdf
Griem, G., L. Oliker, J. Shalf, and K. Yelick (2004). Identifying performance bottlenecks on modern microarchitectures using an adaptable probe. In 3rd International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems, Santa Fe, NM. LBNL-54901. http://www-library.lbl.gov/docs/LBNL/549/01/PDF/LBNL-54901.pdf
Grigori, L., J. W. Demmel, and X. S. Li (2005). Parallel Symbolic Factorization for Sparse LU with Static Pivoting. SIAM J. Scientific Computing. LBNL-59031.
Grigori, L. and X. S. Li (2002). A new scheduling algorithm for parallel sparse LU factorization with static pivoting. In SC2002, Baltimore. LBNL-50520. http://www-library.lbl.gov/docs/LBNL/505/20/PDF/LBNL-50520.pdf
Grigori, L. and X. S. Li (2004). Performance analysis of parallel supernodal sparse LU factorization. In PARA'04 Workshop on State-of-the-Art in Scientific Computing, LNCS, Lyngby, Copenhagen, Denmark. LBNL-54497. http://www-library.lbl.gov/docs/LBNL/544/97/PDF/LBNL-54497.pdf
Grigori, L. and X. S. Li (2006). Towards an Accurate Performance Modeling of Parallel Sparse Factorization. Applicable Algebra in Engineering, Communication, and Computing. LBNL-60384.
Grunbaum, F. A. and L. F. Matusevich (2005). Explicit inversion formulas for a model in diffuse tomography. Advances in Applied Mathematics 29 (2), 172-83. LBNL-51991.
Gunter, D., B. L. Tierney, C. E. Tull, and V. Virmani (2003). On-demand grid application tuning and debugging with the netlogger activation service. In 4th International Workshop on Grid Computing (Grid2003), Phoenix, Arizona. LBNL-52991. http://www-library.lbl.gov/docs/LBNL/529/91/PDF/LBNL-52991.pdf
He, Y. and C. H. Q. Ding (2005). Coupling Multi-Component Models with MPH on Distributed Memory Computer Architectures. International Journal of High Performance Computing Applications. LBNL-58385.
Iancu, C., P. Husbands, and W. Chen. Message strip mining heuristics for high speed networks. LBNL-54010. http://www-library.lbl.gov/docs/LBNL/540/10/PDF/LBNL-54010.pdf | http://www-library.lbl.gov/docs/LBNL/540/10/PS/LBNL-54010.ps
Iancu, C., H. Parry, and P. Hargrove (2005). Hunting the Overlap. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. LBNL-58381. http://www-library.lbl.gov/docs/LBNL/583/81/PDF/LBNL-58381.pdf
Jaffe, A. H., A. Balbi, J. R. Bond, J. Borrill, P. G. Ferreira, D. Finkbeiner, S. Hanany, A. T. Lee, B. Rabii, P. L. Richards, G. F. Smoot, R. Stompor, C. D. Winant, and J. H. P. Wu. Determining foreground contamination in CMB observations: Diffuse galactic emission in the MAXIMA-I field. LBNL-53497.
Jagadish, H. V. and F. Olken (2003). Database management for life sciences research: Workshop report National Library of Medicine, February 2-3, 2003. LBNL-52767.
Jagadish, H. V. and F. Olken. Database management for life science research: Summary report of the workshop on data management for molecular and cell biology at the National Library of Medicine, Bethesda, Maryland, February 2-3, 2003 131. LBNL-52767.
Jagadish, H. V. and F. Olken. Data management for biology - guest editorial. LBNL-53671.
Kamil, S., A. Pinar, D. Gunter, M. Lijewski, L. Oliker, J. Shalf, and D. Skinner (2006). Reconfigurable Hybrid Interconnection for \\ Static and Dynamic Scientific Applications. In International Conference for High Performance Computing, Networking, Storage and Analysis, Tampa, FL. LBNL-60060. http://www-library.lbl.gov/docs/LBNL/600/60/PDF/LBNL-60060.pdf
Kang, N. and L. A. Drummond (2003). A first prototype of PyACTS. LBNL-53849. http://www-library.lbl.gov/docs/LBNL/538/49/PDF/LBNL-53849.pdf
Kasen, D., P. Nugent, R. C. Thomas, and L. Wang (2004). Could there be a hole in type Ia supernovae? Astrophysical Journal 610 (2 pt1), 876-87. LBNL-54943. http://www-library.lbl.gov/docs/LBNL/549/43/PDF/LBNL-54943.pdf | http://www-library.lbl.gov/docs/LBNL/549/43/PS/LBNL-54943.ps
Kasen, D. N. (2004). Aspherical supernovae. In Physics, University of California, Berkeley, Berkeley, CA. LBNL-55141. http://www-library.lbl.gov/docs/LBNL/551/41/PDF/LBNL-55141.pdf | http://www-library.lbl.gov/docs/LBNL/551/41/PS/LBNL-55141.ps
Kramer, W. T. C., A. Shoshani, D. A. Agarwal, B. R. Draney, G. Jin, G. F. Butler, and J. A. Hules (2004). Deep scientific computing requires deep data. IBM Research and Development 48 (2), 209-232. LBNL-55724.
Kreylos, O., N. Max, B. Hamann, S. Crivelli, and W. Bethel (2003). Interactive protein manipulation. In Visualization 2003, Seattle, Washington. LBNL-52414.
Kupferman, R. (2005). On the linear stability of plane couette flow for an Oldroyd-B fluid and its numerical approximation. Journal of Non-Newtonian Fluid Mechanics 127, 169-190. LBNL-56885.
Kupferman, R., G. A. Pavliotis, and A. M. Stuart (2004). Ito versus stratonovich white noise limits for systems with inertia and colored multiplicative noise. Physical Review E 70, 1-9. LBNL-54465.
Kupferman, R. and A. M. Stuart (2004). Fitting SDE models to nonlinear Kac-Zwanzig heat bath models. Physica D 199, 279-316. LBNL-54462.
Lee, B. and L.-W. Wang (2005). Electronic structure of Calcium hexaborides. Applied Physics Letters 87, 262509. LBNL-57944. http://www-library.lbl.gov/docs/LBNL/579/44/PDF/LBNL-57944.pdf | http://www-library.lbl.gov/docs/LBNL/579/44/PS/LBNL-57944.ps
Lee, B. and L.-W. Wang (2006). Electronic Structure of zinc-blende AlGaN; Screened-Exchange Study. Physical Review B. LBNL-59272.
Levan, A., P. Nugent, A. Fruchter, I. Burud, D. Branch, J. Rhoads, A. Castro-Tirado, J. Gorosabel, J. M. C. Ceron, S. E. Thorsett, C. Kouveliotou, S. Golenetskii, J. Fynbo, P. Garnavich, S. Holland, J. Hjorth, P. Moller, E. Pian, N. Tanvir, M. Ulanov, R. Wijers, and S. Woosley (2004). GRB 020410: A Gamma-ray burst afterglow discovered by its supernova light. The Astrophysical Journal 624 (2pt1), 880-888. LBNL-54762. http://www-library.lbl.gov/docs/LBNL/547/62/PDF/LBNL-54762.pdf
Li, J. and L.-w. Wang (2003). High energy excitations in CdSe quantum rods. Nano letters 3 (1). LBNL-51743.
Li, J. and L.-W. Wang (2004). First principle calculations of ZnS:Te energy levels. Physical Review B 67. LBNL-53509.
Li, J. and L.-W. Wang (2004). First principle study of core/shell structure quantum dots. Applied Physics Letter 84 (18), 3648. LBNL-54810. http://www-library.lbl.gov/docs/LBNL/548/10/PDF/LBNL-54810.pdf
Li, J. and L.-W. Wang (2004). Comparison of quantum confinement effects between quantum wires and dots. Chemistry of Materials 16 (21), 4012-4015. LBNL-54814. http://www-library.lbl.gov/docs/LBNL/548/14/PDF/LBNL-54814.pdf
Li, J. and L.-W. Wang (2004). Deformation potentials of CdSe quantum dots. Applied Physics Letters 85 (14), 2929-2931. LBNL-55292. http://www-library.lbl.gov/docs/LBNL/552/92/PDF/LBNL-55292.pdf
Li, J. and L.-W. Wang (2005). Band-structure-corrected local density approximation study of semiconductor quantum dots and wires. Physical Review B 72 (12), 125325(1-15). LBNL-57945.
Li, X. S. (2003). An overview of SuperLU: Algorithms, implementation, and user interface. ACM Trans. on Math. Software (Special Issue on the DOE ACTS Collection). LBNL-53848.
Li, X. S., W. Gao, P. J. R. Husbands, C. Yang, and E. G. Ng (2005). The Roles of Sparse Direct Methods in Large-scale Simulations. In SciDAC 2005, San Francisco, CA. LBNL-58654. http://www-library.lbl.gov/docs/LBNL/586/54/PDF/LBNL-58654.pdf
Li, X. S. and Y. Wang (2003). Performance evaluation and enhancement of SuperLU_DIST 2.0. LBNL-53624. http://www-library.lbl.gov/docs/LBNL/536/24/PDF/LBNL-53624.pdf
Lidman, C., D. A. Howell, G. Folatelli, G. Garavini, S. Nobili, G. Aldering, R. Amanullah, P. Antilogus, P. Astier, G. Blanc, M. S. Burns, A. Conley, S. E. Deustua, M. Doi, R. Ellis, S. Fabbro, V. Fadeyev, R. Gibbons, G. Goldhaber, A. Goobar, D. E. Groom, I. Hook, N. Kashikawa, A. G. Kim, R. A. Knop, B. C. Lee, J. Mendez, T. Morokuma, K. Motohara, P. E. Nugent, R. Pain, S. Perlmutter, V. Prasad, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, B. E. Schaefer, K. Schahmaneche, E. Smith, A. L. Spadafora, V. Stanishev, N. A. Walton, L. Wang, W. M. Wood-Vasey, and N. Yasuda (2004). Spectroscopic confirmation of high-redshift supernovae with the ESO VLT. Astronomy and Astrophysics 430, 843-851. LBNL-57859.
Lowekamp, B., B. Tierney, L. Cottrell, R. Hughes-Jones, T. Kielmann, and M. Swany (2003). Enabling network measurement portability through a hierarchy of characteristics. In Grid 2003, Phoenix, AZ. LBNL-53013. http://www-library.lbl.gov/docs/LBNL/530/13/PDF/LBNL-53013.pdf
Luo, J. W., S. S. Li, J. B. Xia, and L.-W. Wang (2005). A comparative study for colloidal quantum dot calculations. Applied Physics Letter. LBNL-57947.
Luo, J.-W., S.-S. Li, J.-B. Xia, and L.-W. Wang (2005). Photoluminescence pressure coefficients of InAs/GaAs quantum dots. Physical Review B 71, 245315(1-5). LBNL-57950.
Manna, L., L. W. Wang, R. Cingolani, and A. P. Alivisatos (2005). First-principles modeling of unpassivated and surfactant-passivated bulk facets of wurtzite CdSe: A Model System for Studying the Anisotropic Growth of CdSe Nanocrystals. Journal of Physical Chemistry B 109 (13), 6183-92. LBNL-57949.
Markowitz, V. M., F. Korzeniewski, K. Palaniappan, and E. Szeto (2005). The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. In VLDB 2005, Trondheim, Norway. LBNL-57134.
Markowitz, V. M., F. Korzeniewski, K. Palaniappan, E. Szeto, N. Ivanova, N. Kyrpides, and P. Hugenholtz (2006). An Experimental Metagenome Data Management and Analysis System. In ISMB 2006, Fortaleza, Brazil. LBNL-60051. http://www-library.lbl.gov/docs/LBNL/600/51/PDF/LBNL-60051.pdf
Marques, O., J. Riedy, and C. Voemel (2006). Benefits of IEEE-754 features in modern symmetric tridiagonal eigensolvers. SIAM Journal on Scientific Computing (SISC). LBNL-58944.
Martin, D. F., P. Colella, M. Anghel, and F. J. Alexander (2005). Adaptive mesh refinement for multiscale nonequilibrium physics. Computing in Science and Engineering 7 (3), 24-31. LBNL-58786.
McCorquodale, P. (2003). AMRNodeElliptic software package node-centered AMR for elliptic probl ems. LBNL-53686. http://www-library.lbl.gov/docs/LBNL/536/86/PDF/LBNL-53686.pdf
McCorquodale, P. (2003). AMRNodeElliptic user guide: On rectangular problem domains. LBNL-53687. http://www-library.lbl.gov/docs/LBNL/536/87/PDF/LBNL-53687.pdf
McCorquodale, P. (2003). AMRNodeElliptic user guide: On irregular problem domains. LBNL-53688. http://www-library.lbl.gov/docs/LBNL/536/88/PDF/LBNL-53688.pdf
McCorquodale, P., P. Colella, D. P. Grote, and J.-L. Vay (2004). A node-centered local refinement algorithm for poisson's equation in complex geometries. A node-centered local refinement algorithm for poisson's equation in complex geometries. LBNL-54138.
Meza, J. C. and R. A. Oliva (2003). An Object Oriented Library To Manage The Collection Of Schittkowki Test Problems For Nonlinear Optimization. In ACM Richard Tapia Celebration of Diversity in Computing 2003, Atlanta, GA. LBNL-53685.
Meza, J. C., R. A. Oliva, P. D. Hough, and P. J. Williams (2003). OPT++: An object-oriented toolkit for nonlinear optimization. ACM Transactions on Mathematical Software. LBNL-54161.
Miller, G. H. (2003). An iterative Riemann solver for systems of hyperbolic conservation law s, with application to hyperelastic solid mechanics. Journal of Computational Physics 193 (1). LBNL-53795.
Miller, G. H. (2004). Minimal rotationally-invariant bases for hyperelasticity. SIAM Journal on Applied Mathematics 64 (6), 2050-75. LBNL-55531.
Nobili, S., R. Amanullah, G. Garavini, A. Goobar, C. Lidman, V. Stanishev, G. Aldering, P. Antilogus, P. Astier, M. S. Burns, A. Conley, S. E. Deustua, R. Ellis, S. Fabbro, V. Fadeyev, G. Folatelli, R. Gibbons, G. Goldhaber, D. E. Groom, I. Hook, D. A. Howell, A. G. Kim, R. A. Knop, P. E. Nugent, R. Pain, S. Perlmutter, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, K. Schahmaneche, E. Smith, A. L. Spadafora, R. C. Thomas, and L. Wang (2005). Restframe I-band Hubble diagram for type Ia supernovae up to redshift z ~ 0.5. Astronomy and Astrophysics 437, 789-804. LBNL-58330. http://www-library.lbl.gov/docs/LBNL/583/30/PDF/LBNL-58330.pdf
Nugent, P. (2005). UV Spectroscopy of Type Ia Supernovae at Low- and High-Redshift. In 1604-2004 Supernovae as Cosmological Lighthouses, edited by T. e. al., ASP, Padua, Italy. LBNL-58336. http://www-library.lbl.gov/docs/LBNL/583/36/PDF/LBNL-58336.pdf
Nugent, P., M. Sullivan, R. Ellis, A. Gal-Yam, D. Leonard, D. Howell, P. Astier, R. Carlberg, A. Conley, S. Fabbro, F. D., J. Neill, R. Pain, K. Perrett, and C. Pritchet (2006). Towards a Cosmological Hubble Diagram for Type II-P Supernovae. Astrophysical Journal. LBNL-59881.
Oliker, L. (2004). Performance evaluation of the SX-6 vector architecture for scientific computations. In SIAM Parallel Processing for Scientific Computing, San Francisco, CA. LBNL-54904.
Oliker, L., R. Biswas, J. Borrill, A. Canning, J. Carter, J. Djomehri, H. Shan, and D. Skinner (2004). A performance evaluation of the Cray X1 for scientific applications. In VECPAR'04: 6th International Meeting on High Performance Computing for Computational Science, Valencia, Spain. LBNL-54905. http://www-library.lbl.gov/docs/LBNL/549/05/PDF/LBNL-54905.pdf
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Oliker, L., A. Canning, J. Carter, J. Shalf, D. Skinner, S. Ethier, R. Biswas, J. Djomehri, and R. Van der Wijngaart (2003). Evaluation of cache-based superscalar and cacheless vector architectures for scientific computations. In SC2003: High Performance Computing, Networking and Storage Conference, Phoenix, AZ. LBNL-53117. http://www-library.lbl.gov/docs/LBNL/531/17/PDF/LBNL-53117.pdf
Oliker, L., J. Duell, M. Narayanan, and S. Chatterji (2003). Performance evaluation of two emerging media processors: VIRAM and imagine. In Workshop on Parallel and Distributed Image Processing, Video Processing, and Multimedia (PDIVM), Nice, France. LBNL-53116. http://www-library.lbl.gov/docs/LBNL/531/16/PDF/LBNL-53116.pdf
Oliker, L., X. Li, P. Husbands, and R. Biswas (2002). Effects of ordering strategies and programming paradigms on sparse matrix computations. SIAM Review 44 (3). LBNL-53113.
Oliva, R. An object oriented library for molecular dynamics energy computations. LBNL-53778.
Oliva, R., S. Crivelli, and J. Meza (2004). Protein-folding via divide-and-conquer optimization. In SIAM Conference on the Life Sciences, Portland, OR. LBNL-55869. http://www-library.lbl.gov/docs/LBNL/558/69/PDF/LBNL-55869.pdf
Olken, F. Graph data management for molecular biology. LBNL-53672.
Olken, F. and K. D. Keck. Biopathways graph data manager (BGDM). LBNL-53673.
Olken, F. and D. Rotem. Workflow Execution History Data Management: A framework. LBNL-52155.
Olson, D. L. (2002). Summary of Parallel Session I: Grid testbeds and applications. In VIII International Workshop on Advanced Computing and Analysis Techniques in Physics Research, Moscow, Russia. LBNL-52197. http://www-library.lbl.gov/docs/LBNL/521/97/PDF/LBNL-52197.pdf
Otoo, E., D. Rotem, and A. Romosan (2004). Optimal file-bundle caching algorithms for data-grids. In SC2004 High Performance Computing, Networking and Storage Conference, Pittsburg, PA. LBNL-54881. http://www-library.lbl.gov/docs/LBNL/548/81/PDF/LBNL-54881.pdf
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Pinar, A., E. Chow, and A. Pothen. The nice basis problem. LBNL-52481.
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Pinar, A., M. Singh, and E. Ng (2003). Nested dissection orderings for LU factorization with static pivoting. In SIAM Workshop on Combinatorial Scientific Computing, San Francisco. LBNL-53988. http://www-library.lbl.gov/docs/LBNL/539/88/PDF/LBNL-53988_Abs.pdf
Pinar, A. and T. Tao. Efficient indexing for scientific databases. LBNL-52483.
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Raczkowski, D., L.-W. Wang, and A. Canning. An all band iterative diagonalization method for total energy calculations of metalic systems. LBNL-53523.
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Rotem, D., K. Stockinger, and K. Wu (2005). Optimizing Candidate Check Costs for Bitmap Indices. In The ACM Conference on Information and Knowledge Management (CIKM), Bremen, Germany. LBNL-58754. http://www-library.lbl.gov/docs/LBNL/587/54/PDF/LBNL-58754.pdf
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Rotem, D., K. Stockinger, and K. Wu (2006). Minimizing I/O Costs of Multi-Dimensional Queries with Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. LBNL-59949. http://www-library.lbl.gov/docs/LBNL/599/49/PDF/LBNL-59949.pdf
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Santer, B. D., T. M. L. Wigley, C. Mears, F. J. Wentz, S. A. Klein, D. J. Seidel, K. E. Taylor, P. W. Thorne, M. F. Wehner, P. J. Gleckler, J. S. Boyle, W. D. Collins, K. W. Dixon, C. Doutriaux, M. Free, Q. Fu, J. E. Hansen, G. S. Jones, R. Ruedy, T. R. Karl, J. R. Lanzante, G. A. Meehl, V. Ramaswamy, G. Russell, and G. A. Schmidt (2005). Amplification of surface temperature trends and variability in the tropical atmosphere. Science 309 (5740), 1551-1556. LBNL-58623. http://www-library.lbl.gov/docs/LBNL/586/23/PDF/LBNL-58623.pdf
Santer, B. D., T. M. L. Wigley, G. A. Meehl, M. F. Wehner, C. Mears, M. Schabel, F. J. Wentz, C. Ammann, J. Arblaster, T. Bettge, W. M. Washington, G. A. Meehl, J. S. Boyle, W. Bruggemann, and C. Doutriaux. Influence of satellite data uncertainties on the detection of externally forced climate change. LBNL-53516.
Santos, M. G., A. Heavens, A. Balbi, J. Borrill, P. G. Ferreira, S. Hanany, A. H. Jaffe, A. T. Lee, B. Rabii, P. L. Richards, G. F. Smoot, R. Stompor, C. D. Winant, and J. H. P. Wu. Multiple methods for estimating the bispectrum of the cosmic microwave background with application to the MAXIMA data. LBNL-53498.
Schopf, J. and K. R. Jackson. So you want to set up a grid testbed. LBNL-54035.
Schwartz, P., D. Adalsteinsson, P. Colella, A. P. Arkin, and M. Onsum (2005). Numerical Computation of Diffusion on a Surface. Proceedings of the National Academy of Science 102 (32), 11151-56. LBNL-57156. http://www-library.lbl.gov/docs/LBNL/571/56/PDF/LBNL-57156.pdf
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Shah, N., O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann, and I. Dubchak (2004). Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA Sequence Alignments. LBNL-54136. http://www-library.lbl.gov/docs/LBNL/541/36/PDF/LBNL-54136.pdf
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Shah, N., A. Poliakov, D. Ryaboy, M. V. Teplitsky, B. Hamann, E. M. Rubin, and I. L. Dubchak (2004). VISTA tools for interactive visualization and analysis of multiple alignments of DNA sequences and whole genomes. In The Biology of Genomes, Cold Spring Harbor, NY, USA. LBNL-55394. http://www-library.lbl.gov/docs/LBNL/553/94/PDF/LBNL-55394_Abs.pdf
Shah, N., G. H. Weber, S. E. Dillard, and B. Hamann (2004). Volume visualization of multiple alignment of genomic DNA. In IEEE Symposium on Information Visualization, IEEE Press, Austin TX. LBNL-55386. http://www-library.lbl.gov/docs/LBNL/553/86/PDF/LBNL-55386.pdf
Shalf, J., M. J. Bennett, and G. Bell (2003). Transport requirements for high performance network applications that are NOT FTP. In Second International Workshop on Protocols for Fast Long-Distance Networks, Chicago, Illinois. LBNL-54031. http://www-library.lbl.gov/docs/LBNL/540/31/PDF/LBNL-54031_Abs.pdf
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Shalf, J. and T. Goodale (2004). GridRun: A lightweight packaging and execution environment for compact, multi-architecture binaries. In Thirteenth IEEE International Symposium on High-Performance Distributed Computing, Honolulu, HI. LBNL-54576. http://www-library.lbl.gov/docs/LBNL/545/76/PDF/LBNL-54576_Ext._Abs.pdf
Shan, H., L. Oliker, and R. Biswas (2003). Job superscheduler architecture and performance in computational grid environments. In SC2003: High performance computing, networking, and storage conference, Phoenix, AZ. LBNL-53118.
Shan, H., J. P. Singh, L. Oliker, and R. Biswas (2002). Message passing and shared address space parallelism on an SMP cluster. Parallel Computing 29. LBNL-53114.
Shan, H. and E. Strohmaier (2004). Performance characteristics of the Cray X1 and their implications for application performance tuning. In 18th Annual ACM International Conference on SUpercomputing, edited by G. Feautrier, Seznec, Association for Computing Machinery, St. Malo, France. LBNL-55082. http://www-library.lbl.gov/docs/LBNL/550/82/PDF/LBNL-55082.pdf
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Shan, H., E. Strohmaier, and L. Oliker (2004). Optimizing performance of superscalar codes for a single Cray X1 MSP processor. In Cray Uers Group CUG 2004, Knoxville, TN. LBNL-55635. http://www-library.lbl.gov/docs/LBNL/556/35/PDF/LBNL-55635.pdf
Shoshani, A. "Multidimensionality in statistical, OLAP, and scientific databases," chapter in multidimensional databases: Problems and solutions. Vol., p. LBNL-53626.
Shoshani, A. (2006). The Scientific Data Management Center. LBNL/PUB-964. http://www-library.lbl.gov/docs/PUB/964/PDF/PUB-964.pdf
Shoshani, A., A. Sim, and K. Stockinger (2005). RRS: Replica Registration Service for Data Grids. In VLDB Workshop on Data Management in Grids, Trondheim, Norway. LBNL-58295. http://www-library.lbl.gov/docs/LBNL/582/95/PDF/LBNL-58295.pdf
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Siegerist, C., J. Shalf, E. W. Bethel, and C. Siegerist (2004). Interactive Remote and Distributed Visualization of Fusion Simulation Results. LBNL/PUB-892. http://www-library.lbl.gov/docs/PUB/892/PDF/PUB-892.pdf
Sim, A., J. Gu, A. Shoshani, and V. Natarajan (2004). DataMover: robust terabyte-scale multi-file replication over wide-area networks. In Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM 2004), Greece. LBNL-54854. http://www-library.lbl.gov/docs/LBNL/548/54/PDF/LBNL-54854.pdf
Simon, H., W. Kramer, W. Saphir, J. Shalf, D. Bailey, L. Oliker, M. Banda, C. W. McCurdy, J. Hules, A. Canning, M. Day, P. Colella, D. Serafini, M. Wehner, and P. Nugent (2004). Science-driven system architecture: A new process for leadership class computing. Journal of the Earth Simulator 2, 2-10. LBNL-56545. http://www-library.lbl.gov/docs/LBNL/565/45/PDF/LBNL-56545.pdf
Simon, H. D., L. Oliker, A. Canning, J. Carter, S. Ethier, and J. Shalf (2004). Evaluation of leading scalar and vector architectures for scientific computations. LBNL-55291. http://www-library.lbl.gov/docs/LBNL/552/91/PDF/LBNL-55291.pdf
Smith III, G. C. (2005). OS X Security Set-Up and User's Guide. LBNL/PUB-3186. http://www-library.lbl.gov/docs/PUB/3186/PDF/PUB-3186.pdf | http://www-library.lbl.gov/docs/PUB/3186/SRC/PUB-3186.doc
Souza, E. d. and D. Agarwal (2003). A highspeed TCP Study: Characteristics and Deployment Issues. In Not yet available, disneyland. LBNL-53215.
Spierling, C. and I. Collaboration (2004). The icecube project. In VLVnT Workshop on Technical Aspects of a Very Large Volume Neutrino Telescope in the Mediterrenean Sea, Amsterdam, The Netherlands, astro-ph/0404090. LBNL-55610.
Stern, D., P. G. van Dokkum, P. Nugent, D. J. Sand, R. S. Ellis, M. Sullivan, J. S. Bloom, D. A. Frail, J.-P. Kneib, L. V. E. Koopmans, and T. Treu (2004). Discovery of a transient U-band dropout in a lyman break survey: A tidally disrupted star at z=3.3? Astrophysical Journal 612, 690-97. LBNL-56715.
Stinis, P. (2005). A Hybrid Method for the Inviscid Burgers Equation. Discrete and Continuous Dynamical Systems 9 (4), 793-799. LBNL-51996.
Stinis, P. (2005). A comparative study of two stochastic mode reduction methods. Physica D 213 (2), 197-213. LBNL-54484.
Stinis, P. and A. J. Chorin (2006). Numerical scaling analysis of the small-scale structure in turbulence. to be submitted for publication. LBNL-59490.
Stockinger, K., D. Rotem, A. Shoshani, and K. Wu (2006). Analyzing Enron Data: Bitmap Indexing Outperforms MySQL Queries by Several Orders of Magnitude. LBNL-59437. http://www-library.lbl.gov/docs/LBNL/594/37/PDF/LBNL-59437.pdf
Stockinger, K., J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. In International conference on Scientific and Statistical Database Management (SSDBM 2005), Santa Barbara, California. LBNL-57023. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023_Conf.pdf
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Stockinger, K., J. Shalf, K. Wu, and E. W. Bethel (2005). Query-Driven Visualization of Large Data Sets. In IEEE Visualization, Minneapolis, MN. LBNL-57511. http://www-library.lbl.gov/docs/LBNL/575/11/PDF/LBNL-57511.pdf
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Stockinger, K. and K. Wu (2006). Bitmap Indices for Data Warehouses. In Data Warehouses and OLAP: Concepts, Architectures and Solutions, edited by C. K. R. Wrembel, Idea Group, Inc., Vol., p. LBNL-59952. http://www-library.lbl.gov/docs/LBNL/599/52/PDF/LBNL-59952.pdf
Stockinger, K., K. Wu, R. Brun, and P. Canal (2005). Bitmap Indices for Fast End-User Physics Analysis in ROOT. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. LBNL-58426.
Stockinger, K., K. Wu, S. Campbell, S. Lau, M. Fisk, E. Gavrilov, A. Kent, C. E. Davis, R. Olinger, R. Young, J. Prewett, P. Weber, T. P. Caudell, E. W. Bethel, and S. Smith (2005). Network Traffic Analysis With Query Driven VisualizationSC 2005 HPC Analytics Results. In Supercomputing 2005, ACM - Association for Computing Machinery, Seattle, Washington. LBNL-58768. http://www-library.lbl.gov/docs/LBNL/587/68/PDF/LBNL-58768.pdf
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Strohmaier, E. (2003). Top500 list's twice-yearly snapshots of world's fastest supercomputers develop into big picture of changing technology. Scientific Computing and Instrumentation 20 (9). LBNL-53838.
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