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UniSTS:24446 Links
SHGC-4171
Homo sapiens chromosome 2, locus HEATR5B
Pan troglodytes chromosome 2A, locus HEATR5B

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:CACCACAAAACAGACACTTTC
Reverse primer:CAATTGTATCATGTAGTCGGG
PCR product size:154 (bp), Homo sapiens
GenBank Accession:T17419

   Homo sapiens
Name: SHGC-4171
Also known as: NIB883 STS-T17419 sts-T17419
Polymorphism info:  

Cross References Help
Gene GeneID:54497
 Symbol:HEATR5B
 Description:HEAT repeat containing 5B
 Position:2p22.2
UniGeneHs.468186 Transcribed locus
 Hs.591564 HEAT repeat containing 5B

Mapping InformationHelp
SHGC-4171 Sequence Map: Chr 2|HuRef Map Viewer
  Position: 36948443-36948596 (bp)
 
SHGC-4171 Sequence Map: Chr 2|Celera Map Viewer
  Position: 37049209-37049362 (bp)
 
SHGC-4171 Sequence Map: Chr 2 Map Viewer
  Position: 37061693-37061846 (bp)
 
NIB883 NCBI RH Map: Chr 2 Map Viewer
  Position: 271.1 (cR)
  Lod score: 1.67
 
SHGC-4171 TNG Map: Chr 2 Map Viewer
  Position: 78979 (cR50000)
  Lod score: 4.1
  Reference Interval: 242
 
NIB883 Whitehead-RH Map: Chr 2 Map Viewer
  Position: 177.8 (cR3000)
  Lod score: P>3.00
 
SHGC-4171 GeneMap99-G3 Map: Chr 2 Map Viewer
  Position: 1551 (cR10000)
  Lod score: 0.88
  Reference Interval: D2S2230-D2S177
 
NIB883 GeneMap99-GB4 Map: Chr 2 Map Viewer
  Position: 117.23 (cR3000)
  Lod score: 0.80
  Reference Interval: D2S2230-D2S177
 
sts-T17419 GeneMap99-GB4 Map: Chr 2 Map Viewer
  Position: 117.23 (cR3000)
  Lod score: 0.80
  Reference Interval: D2S2230-D2S177

Electronic PCR results Help
RefSeq mRNA (1)
NM_019024.1 6603 .. 6756 (154 bp)  
 
mRNA (5 of 6)[Show All Hits]
AK001513.1 2046 .. 2199 (154 bp)  
AB037835.1 5053 .. 5206 (154 bp)  
AK026928.1 2866 .. 3019 (154 bp)  
AL832880.1 2008 .. 2161 (154 bp)  
BX538008.1 5529 .. 5682 (154 bp)  
 
Genomic (5 of 7)[Show All Hits]
AC007404.4 92011 .. 92164 (154 bp)  
CH003449.1 36868937 .. 36869090 (154 bp)  
CH003497.1 39085008 .. 39085161 (154 bp)  
CH471053.2 36981144 .. 36981297 (154 bp)  
CM000253.1 37049209 .. 37049362 (154 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC073168.1 49428 .. 49581 (154 bp)  
 
ESTs (5 of 47)[Show All Hits]
T17419.1 33 .. 186 (154 bp)  
Z41197.1 33 .. 186 (154 bp)  
F09206.1 33 .. 186 (154 bp)  
F09207.1 33 .. 186 (154 bp)  
T99540.1 43 .. 196 (154 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01016930.1 1862 .. 2015 (154 bp)  
AADC01014872.1 660698 .. 660851 (154 bp)  
AADB02001667.1 1450603 .. 1450756 (154 bp)  
ABBA01074970.1 51723 .. 51876 (154 bp)  
 

   Pan troglodytes
Name: SHGC-4171
Polymorphism info:  

Cross References Help
Gene GeneID:459152
 Symbol:HEATR5B
 Description:HEAT repeat containing 5B
 Position: 

Mapping InformationHelp
SHGC-4171 Sequence Map: Chr 2A Map Viewer
  Position: 37800018-37800169 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XM_515406.2 6600 .. 6751 (152 bp)  
 
Genomic (1)
CM000315.1 37800018 .. 37800169 (152 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01238246.1 5858 .. 6009 (152 bp)  
AACZ02019915.1 9907 .. 10058 (152 bp)  
 

 

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