prokMSA_id: 15031
prokMSAname: Listeria innocua str. NCTC11288

GenBank ACCESSION: X56152.1
GenBank GI: 44004
Pubmed/Medline: 1713054 91307972
RDP_id: S000129453
NCBI_tax_id: 1642
Study_id: 17555

Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=

G2_chip_tax_string=NA
Hugenholtz_tax_string=Bacteria; Firmicutes; Bacilli
Ludwig_tax_string=prokaryotes; Bacteria; Firmicutes; Bacillales Mollicutes; Listeriaceae; Listeria et rel.; Listeria monocytogenes et rel.
Pace_tax_string=Bacteria; Firmicutes; Bacilli; Listeriaceae; Listeria
RDP_tax_string=Bacteria; Firmicutes; "Bacilli"; Bacillales; "Listeriaceae"; Listeria
ncbi_tax_string=Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria

authors(alphabetically)=Collins,M.D., Dorsch,M., Lane,D.J., Nietupski,R., Shah,J., Smida,J., Stackebrandt,E., Wallbanks,S.
blast_perc_ident_to_template=90.2
chi_checked=1
contact_info=Collins M.D., AFRC Institute of Food Research, Reading Laboratory, Brookers Hill Shinfield, Reading Berks RG2 9AT, U K
create_date=15-JAN-1992
decision=named_isolate
description=L.innocua gene for 16S ribosomal RNA
journal=Int. J. Syst. Bacteriol. 41 (2), 240-246 (1991)
longest_insertion=1
ncbi_acc=X56152
non_ACGT_count=14
non_ACGT_percent=0.9556
organism=Listeria innocua
perc_ident_to_invariant_core=97.3
prokMSA_id=15031
prokMSAname=Listeria innocua str. NCTC11288
small_gap_intrusions=5
source=Listeria innocua
span_aligned=5..1469
strain=NCTC11288
submit_date=13-SEP-1990
template=14754
timestamp=20060324024242
title=Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA
unaligned_length=1465
update_date=06-JUN-2003

>Listeria innocua str. NCTC11288 prokMSA_id:15031 X56152.1
GAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT
GCAAGTCGAACGAACGGAGGAAGAGCTTGCTCTTCCAAAGTTAGTGGCGG
ACGGGTGAGTAACACGTGGGCAACCTGCCTGTAAGTTGGGGATAACTCCG
GGAAACCGGGGCTAATACCGAATGATAGAGTGTGGCGCATGCCACGCTCT
TGAAAGATGGTTTCGCTATCGCTTACAGATGGGCCCGCGGTGCATTAGCT
AGTTGGTAGGGTAATGGCCTACCAAGGCAACGATGCATAGCCGACCTGAG
AGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGA
GGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACG
CCGCGTGTATGAAGAAGGTTTTCGGATCGTAAAGTACTGTGGTTAGAGAA
GAACAAGGATAAGAGTAACTGCTTGTCCCTTGACGGTATCTAACCAGAAA
GCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCNAGC
GTTGTCCGGATTTATTGGGCGTCAAGCGCGCGCAGGCGGTCTTTTAAGTC
TNATGTGAAAGCCCCCGGCTNAACCGGGNNGGGTCATTGGAAACTGGAAG
ACTCGAGTGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTNAAATGC
GTAGATATGTGGAGGAACACCAGTGGCGAAGGCGACTCTCTGGTCTGTAA
CTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG
GTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGGGGGTTTCCGCCC
CTTAGTGCTGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGACCG
CAAGGTTGAAACTCAAAGGAATTGACGGGGGCCGCACAAGCGGTGGAGCA
TGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCC
TTTGACCACTCTGGAGACAGAGCTTTCCCTTCGGGGACAAAGTGACAGGT
GGNGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCG
CAACGAGCGCAACCCTTGATTTTAGTTGCCAGCATTTAGTTGGGCACTCT
AAAGTGACTGCCGGTGCAAGCCGGAGGAAGGTGGGGATGACGTCAAATCA
TCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGATGGTACAA
AGGGTCGCGAAGCCGCGAGGTGGAGCCAATCCCATAAAACCATTCTCAGT
TCGGATTGTAGGCTGCAACTCGCCTNCATGAAGCCGGAATCGCTNGTAAT
CGTGGATCAGCATGCCACGGTNAATACGTTCCCGGGCCTNGTACACACCG
CNCGTCACACCACGAGAGTTNGTAACACCCGAAGTCGGTAGGGTNACCTT
TATGGAGCCAGCCGC

>Listeria innocua str. NCTC11288 prokMSA_id:15031 X56152.1
..................................................
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.......GAGAGTTT-GA--T-CC-T-G-GCTC-AG-GA-CGAA-C-GC-
-TGG-C--G-GC-G-TG--C----C-T--AATACA-T-GC-A-AGT-CGA
-A-CGA---------A-C---GG-A-------------------------
---GGAAG--AG--------------------------------------
--------------CTT-G-------------------------------
--------------------------------------------------
-CTCTTCC-------------------AA--A--GT--T--AG-T-GGCG
-G--A--C-------------GGG-TGAGT-A--AC-AC-G-T-G-GG--
-CAA--C-CTGC--C-T--GT--AA-G-----------------------
-------------------------------------------T-TG---
-GGG-AT-AA-CTC-------------------------C-G-G------
-----------------GAA-A---CCG-GGG-CTAATAC---CG-A---
-AT-G---------------------------------A-TA-G-A--G-
-T----------------GTG---GC------------------------
--------------------------------------------------
-----------------------------------------------G-C
A-T-----------------------------------------------
--------------------------------------------------
-------------------------------------G-C-C--ACG---
------------C--T---C-T-T--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------GAAA--G-A-T-GG-----T---
--T-----------------------------------------------
--------------------------------------------------
----------------------TCG-------------------------
--------------------------------------------------
-----------------------------------------------C--
T---A--T---C-G--------------C----T-T---A-CA-G---AT
---G-G-----G-CCC-GCG--G-TGC--A------TT--A--G-CT-A-
---G---TTGG-T-A-GG-G-T----AAT-GG-C-C-T-ACCA--A-GG-
C-A--A-CG-A------------TGC-A-T------AG-CC-G-A-CCT-
G-AG----A--GG-GT--G-AT-C-GG-CCAC-A-CTGGG--A-C-TG-A
-GA-C-AC-G-G-CCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TA---GG-G-A-ATC-TTCCG-C-AA-T-GG--AC-GA-A----A-G-
TC-T-GA-CG-GA-GCAA-CGCC-G-CG-T---G-T-A--T--GA-A-G-
-A--A-G-G-TT-----TT-CG---------G-A-T-C-G-T--A---AA
-G-TAC--------TG-TG-G-T--T-AGA----GA-A--G---AACAAG
G---ATAA-GA----G--T--AA-C---T----G-----CT-T-G-T-CC
C-TT-GA-CG-GT-A-T-CT-A-AC-C---------AG-----------A
AAGC-CAC-GG-C-TAA---C--T-ACGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GT-AG-GTG-GCN-A-G-CG-TTGT-C-C
GG-AT-TT-A--T-T--GGGC-GTC----AA-GCGC-GC--G-CA-G-G-
C-G------------G--T-CT-T-T-T-AA----G-T-C-T---N-ATG
-TG-A-AA-GC--CC-CCG-G-----------------------------
---------------------------------------CT-N-AA----
--------------------------------------------------
-------------------CC-G-G-GN-NG------G-GTC-A-T-T--
------G--GA-A-A-C-T-G-GAA--G-A-C------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
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--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------T-C-G-A-G-T-G-----C-AG--AA-G-
A------------G-GA-G-AG-T----GG--AATT-CCA-C-GT--GT-
A-GCG-GTNAAA-TG-CGT-AGAT-A-TG-T-GGA--GG-A-AC-A-CC-
AG--T--G--GC-GAA-G--G-C---G----A--C-T-CTCTG------G
-TC-TG--------------------------------------------
------------------TA-A-C-T--GA--CG-----CT-GA-GG--C
-G-CGA--AA-G-C--------------G-TGGG-GAG-C-A-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CA--C-G-CCG
-T-AAA--C-GATG-AG--TG-CT---------A-AG--T--G-T-TA-G
-GG-G--G--T---------------------------------------
---------------------------------------------TT-CC
--------------------------------------------------
--------------------------------------------------
------------------------------------------G---C-C-
C-CT--T-A-G-T-GC-T------GC--A----GC-TAA--CG-C-A-T-
-T--AA-GC--A----C-TCC-GCC-T-G-GG-GAG-TA---CGA-----
C-C--G-C-A-A-GGT-T--GAA-ACTC-AAA---------GGAA-TTG-
ACGGG-G-G--CCG----C-A--C-A-A-GCG-GT-G--G--AG-CA-T-
-GT-GGT-TT-AATT-C-G-AAG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-AGGTC-TT-G-AC-A-T-C--------------CTT-T-G------
-------A-CC-A-C-T--CT--G-GA-G-A-C--A-G-A--G-C-T-T-
-T-C-----CC-------------------------------------T-
-TC-G------------------------------------------GG-
---G----A---CA-AAG---T--GA------------------------
---------------------------C-A-G-G-T-GGNG-CA-TGG-T
T--GTC-GTC-A-GC-TC---G-TG-TC-G--TGA-GA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TG--A
T--T-TTAG--T-T-G-C-C---AG-C-A--T------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------TTAG------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------------------------T----T-G--------
----G----G---C-A--CT---------------C-T-A-A-A-GT-G-
-AC-T-G-CCG--G-T----------------------------------
--G-----CAA----------------------------------G-C-C
-G--G-A-GG-A--AGG-T--GGGG-A-TGAC-GTC--AAAT-C---ATC
-A-T-G-C-C-C-CTT----AT-G--AC-C-T-GG-GC-TA-CAC-ACGT
G-C--TA--CAATG---G-ATGG-T-A--C-AAA-GG-GT----------
--------------------------------------------------
--------------------------------------C-G-C-G-A--A
-GCCG-C--G---------------------------------------A
-GG-T-G-----------G--A-G-CC---A----------A--TCC-C-
-----A-T-AAAAC-CA-T-T-C-T-CAG-TTC--------GGA-T-TGT
AG-GC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-CCTNC-A-T-G-AA-G-CC-GGAAT-CG-C-TN
--G-TA-AT-C-G-T----GGA-TC-A-G-C-------AT--GCC-AC-G
-GT-N-AAT-ACGT-T-CCCGGGCCT-NGTA----CACACCG-CNC-GTC
-----A---CA--CCA-CG-AG-A--G---TTN-G-TA-AC-ACC--C-G
AA------G--T-CGG-TA-G-G-G-T-NA-C-C-T--------------
---------------------------------------------T-TA-
--------------------------------------------------
--------------------------------------------------
T--GG-A-G-C-C--A---GC-CGC--.......................
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prokMSA_id: 15031 prokMSAname: Listeria innocua str. NCTC11288

prokMSA_id: 15031
prokMSAname: Listeria innocua str. NCTC11288