prokMSA_id: 74642
prokMSAname: Lactobacillus gasseri str. ATCC 33323

GenBank ACCESSION: AF519171.1
GenBank GI: 21637410
Pubmed/Medline:
RDP_id: S000008742
NCBI_tax_id: 324831
Study_id: 21071

Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=

G2_chip_tax_string=Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; sf_1; otu_3604
Hugenholtz_tax_string=Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae
Ludwig_tax_string=prokaryotes; Bacteria; Firmicutes; Bacillales Mollicutes; Lactobacillales; Lactobacillaceae; Lactobacillus delbrueckii et rel.; Lactobacillus delbrueckii et rel.; Lactobacillus inners - johnsonii - gasseri
Pace_tax_string=Unclassified
RDP_tax_string=Bacteria; Firmicutes; "Bacilli"; "Lactobacillales"; Lactobacillaceae; Lactobacillus
ncbi_tax_string=Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus

authors(alphabetically)=Karamychev,V.N., Kozyavkin,S.A., Malykh,A.G., Mezhevaya,K.V., Morocho,A.M., Polouchine,N.N., Shakhova,V.V., Shcherbinina,O.V., Slesarev,A.I.
blast_perc_ident_to_template=83.6
chi_checked=1
contact_info=Fidelity Systems, Inc., 7961 Cessna Avenue, Gaithersburg, MD 20879-4117
create_date=01-JUL-2002
decision=named_isolate
description=Lactobacillus gasseri strain ATCC 33323 16S ribosomal RNA gene, complete sequence
gold_id=Gc00447_1of1
img_oid=639633030
longest_insertion=8
ncbi_acc=AF519171
non_ACGT_percent=0.0000
organism=Lactobacillus gasseri ATCC 33323
perc_ident_to_invariant_core=99.2
prokMSA_id=74642
prokMSAname=Lactobacillus gasseri str. ATCC 33323
small_gap_intrusions=5
source=Lactobacillus gasseri ATCC 33323
span_aligned=72..1645
strain=ATCC 33323
submit_date=05-JUN-2002
template=78015
timestamp=20060323090105
title=ThermoFidelase kit with Primers for Direct Genomic Sequencing of Complete rRNA genes
unaligned_length=1574
update_date=01-JUL-2002

>Lactobacillus gasseri str. ATCC 33323 prokMSA_id:74642 AF519171.1
AAAATGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAA
TACATGCAAGTCGAGCGAGCTTGCCTAGATGAATTTGGTGCTTGCACCAG
ATGAAACTAGATACAAGCGAGCGGCGGACGGGTGAGTAACACGTGGGTAA
CCTGCCCAAGAGACTGGGATAACACCTGGAAACAGATGCTAATACCGGAT
AACAACACTAGACGCATGTCTAGAGTTTAAAAGATGGTTCTGCTATCACT
CTTGGATGGACCTGCGGTGCATTAGCTAGTTGGTAAGGTAACGGCTTACC
AAGGCAATGATGCATAGCCGAGTTGAGAGACTGATCGGCCACATTGGGAC
TGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCAC
AATGGACGCAAGTCTGATGGAGCAACGCCGCGTGAGTGAAGAAGGGTTTC
GGCTCGTAAAGCTCTGTTGGTAGTGAAGAAAGATAGAGGTAGTAACTGGC
CTTTATTTGACGGTAATTACTTAGAAAGTCACGGCTAACTACGTGCCAGC
AGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTA
AAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAA
CCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGT
GGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAG
TGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCAT
GGGTAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA
GTGCTAAGTGTTGGGAGGTTTCCGCCTCTCAGTGCTGCAGCTAACGCATT
AAGCACTCCGCCTGGGGAGTACGACCGCAAGGTTGAAACTCAAAGGAATT
GACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACG
CGAAGAACCTTACCAGGTCTTGACATCCAGTGCAAACCTAAGAGATTAGG
TGTTCCCTTCGGGGACGCTGAGACAGGTGGTGCATGGCTGTCGTCAGCTC
GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCAT
TAGTTGCCATCATTAAGTTGGGCACTCTAATGAGACTGCCGGTGACAAAC
CGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGACCTGGG
CTACACACGTGCTACAATGGACGGTACAACGAGAAGCGAACCTGCGAAGG
CAAGCGGATCTCTGAAAGCCGTTCTCAGTTCGGACTGTAGGCTGCAACTC
GCCTACACGAAGCTGGAATCGCTAGTAATCGCGGATCAGCACGCCGCGGT
GAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGAGAGTCT
GTAACACCCAAAGCCGGTGGGATAACCTTTATAGGAGTCAGCCGTCTAAG
GTAGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAAC
CTGCGGCTGGATCACCTCCTTTCT

>Lactobacillus gasseri str. ATCC 33323 prokMSA_id:74642 AF519171.1
..................................................
..................................................
......TGAGAGTTT-GA--T-CC-T-G-GCTC-AG-GA-CGAA-C-GC-
-TGG-C--G-GC-G-TG--C----C-T--AATACA-T-GC-A-AGT-CGA
GCGAGC------TTGCCTAGATGAA-------------------------
---TTTG-G-TG--------------------------------------
--------------CTT-G-------------------------------
--------------------------------------------------
-CAC-CAGA------------TGAAACTAGAT--ACAAGCGAG-C-GG-C
-GG-A--C-------------GGG-TGAGT-A--AC-AC-G-T-G-GG--
-TAA--C-CT-G--C-C-CAA--GA-G-----------------------
-------------------------------------------A-CT---
-GGG-AT-AA-CAC-------------------------C-T-G------
-----------------GAA-A---CAG-ATG-CTAA-TA---CC-G--G
-AT-A---------------------------------A-CA-A-C--A-
-C-----------------TA---GA-C----------------------
--------------------------------------------------
-----------------------------------------------G-C
A-T-----------------------------------------------
--------------------------------------------------
-------------------------------------G-T-C--T-A---
------------G--A-G-T-T-T--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------AAAA--G-A-T-GG---------
--------------------------------------------------
--------------------------------------------------
----------------------TTC-T-----------------------
--------------------------------------------------
--------------------------------------------------
-G-CT--A--TC-A--------------C----T-C---T-TG-G---AT
---G-G-----A-CCT-GCG--G-TGC--A------TT--A--G-CT-A-
---G---TTGG-T-A-AG-G-T----AAC-GG-C-T-T-ACCA--A-GG-
C-A--A-TG-A------------TGC-A-T------AG-CC-G-A-GTT-
G-AG----A--GA-CT--G-AT-C-GG-CCAC-A-TTGGG--A-C-TG-A
-GA-C-AC-G-G-CCCAAA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TA---GG-G-A-ATC-TTCCA-C-AA-T-GG--AC-GC-A----A-G-
TC-T-GA-TG-GA-GCAA-CGCC-G-CG-T---G-A-G--T--GA-A-G-
-A--A-G-G-GT-----TT-CG---------G-C-T-C-G-T--A---AA
-G-CTC--------TG-TT-G-G--T-AGT----GA-A--G---AAAGAT
A---GAGG-TA----G--T--AA-C---T----G-----GC-C-TTT-AT
T--T-GA-CG-GT-A-A-TT-A-CT-T---------AG-----------A
AAGT-CAC-GG-C-TAA---C--T-ACGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GT-AG-GTG-GCA-A-G-CG-TTGT-C-C
GG-AT-TT-A--T-T--GGGC-GTA----AA-GCGA-GT--G-CA-G-G-
C-G------------G--T-TC-A-A-T-AA----G-T-C-T---G-ATG
-TG-A-AA-GC--CT-TCG-G-----------------------------
---------------------------------------CT-C-AA----
--------------------------------------------------
-------------------CC-G-G-AG-AA------TTG-C-A-T-C--
------A--GA-A-A-C-T-G-TTG--A-A-C------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------T-T-G-A-G-T-G-----C-AG--AA-G-
A------------G-GA-G-AG-T----GG--AACT-CCA-T-GT--GT-
A-GCG-GTGGAA-TG-CGT-AGAT-A-TA-T-GGA--AG-A-AC-A-CC-
AG--T--G--GC-GAA-G--G-C---G----G--C-T-CTCTG------G
-TC-TG--------------------------------------------
------------------CA-A-C-T--GA--CG-----CT-GA-GG--C
-T-CGA--AA-G-C--------------A-TGGG-TAG-C-G-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CA--T-G-CCG
-T-AAA--C-GATG-AG--TG-CT---------A-AG--T--GTT-GG-G
-AG-G--T--T---------------------------------------
---------------------------------------------TC-C-
--------------------------------------------------
--------------------------------------------------
------------------------------------------G---C-C-
T-CT--C-A-G-T-GC-T------GC--A----GC-TAA--CG-C-A-T-
-T--AA-GC--A----C-TCC-GCC-T-G-GG-GAG-TA---CGA-----
C-C--G-C-A-A-GGT-T--GAA-ACTC-AAA---------GGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-A-GCG-GT-G--G--AG-CA-T-
-GT-GGT-TT-AATT-C-G-AAG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-AGGTC-TT-G-AC-A-T-C-------------CA-G-T-G------
-------C-AA-A-C-C--TA--A-GA-G-A-T--T-A-G--G-T-G-T-
-T-------CC-------------------------------------C-
-TT-C------------------------------------------GG-
--------G---GA-CGCTG-A--GA------------------------
---------------------------C-A-G-G-T-GGTG-CA-TGG-C
T--GTC-GTC-A-GC-TC---G-TG-TC-G--TGA-GA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TG--T
C--A-TTAG--T-T-G-C-C---AT-C-A--T------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------TAAG------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------------------------T----T-G--------
----G----G---C-A--CT---------------C-T-A-A-T-GA-G-
-AC-T-G-CCG--G-T----------------------------------
--G-A---CAA----------------------------------A-C-C
-G--G-A-GG-A--AGG-T--GGGG-A-TGAC-GTC--AAGT-C---ATC
-A-T-G-C-C-C-CTT----AT-G--AC-C-T-GG-GC-TA-CAC-ACGT
G-C--TA--CAATG---G-ACGG-T-A--C-AAC-GA-GA----------
--------------------------------------------------
--------------------------------------A-G-C-G-A--A
-CCTG-C--G---------------------------------------A
-AG-G-C-----------A--A-G-CG---G----------A--TCT-C-
-----T-G-AAAGC-CG-T-T-C-T-CAG-TTC--------GGA-C-TGT
AG-GC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-CCTAC-A-C-G-AA-G-CT-GGAAT-CG-C-TA
--G-TA-AT-C-G-C----GGA-TC-A-G-C-------AC--GCC-GC-G
-GT-G-AAT-ACGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CA--CCA-TG-AG-A--G---TCT-G-TA-AC-ACC--C-A
AA------G--C-CGG-TG-G-G-A-T-AA-C-C----------------
-------------------------------------------TTT-AT-
--------------------------------------------------
--------------------------------------------------
A--GG-A--GT-C--A---GC-CGT--CT--AAG-G----T-AGG-AC-A
GA------------------------TG--ATT-AGGG-TG-AAG-TCGT
AACAA-GGTAG-CCGT-AGGAGAA-CCTG-CGGC-TGGATCACCTCCTTT
CT................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
................................

prokMSA_id: 74642 prokMSAname: Lactobacillus gasseri str. ATCC 33323

prokMSA_id: 74642
prokMSAname: Lactobacillus gasseri str. ATCC 33323