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Each record below comprises a transcription factor binding site training set created by an expert curator. With each record, we provide the bindings site location with reference to a published sequence (NCBI RefSeq usually), the sequence, the gene which is affected by the binding, the evidence for the binding, any relevant articles pertaining to that site, and the transcription factor which binds the site. We also provide for download the sequence logo for the alignment, and profiles in many different formats as well as suggest recommended options in using the profiles (cut-off scores, distance from gene, taxonomy).
Details | Alignment Name | Description | Alignment Sequences |
High Scoring Hits ? |
Taxonamy |
---|---|---|---|---|---|
(details) | ABC0302_Bacilliales | Predicted regulator of mannoate metabolism | 22 | Bacillales | |
(details) | ABC1168_Bacillus_Burkholderia_Rhodobacteriales | Putative histidinol dehydrogenase gene regulator | 8 | Bacillaceae Burkholderiaceae Rhodobacterales |
|
(details) | BH1250_Bacillaceae_Lactobacillaceae | Predicted alpha-glucosidase regulator | 4 | Bacillaceae Lactobacillaceae |
|
(details) | BH3692_Bacilli_Clostridia | Predicted transcriptional regulator of the trehalose and maltose hydrolase gene | 5 | Bacilli Clostridia |
|
(details) | BirA_Firmicutes | Biotin operon transcriptional repressor | 42 | Bacilli Clostridia |
|
(details) | CcpA_Bacilli | Carbon catabolism transcriptional regulator | 11 | Bacilli | |
(details) | CtsR_Firmicutes | Negative regulaton of class III stress genes. | 21 | Bacilli Clostridia |
|
(details) | ExuR_Bacilli_Clostridia | Predicted transcriptional regulator of uronate metabolism | 29 | Bacilli Clostridia |
|
(details) | KdgR_Bacillaceae | Predicted KdgR regulator in Bacillaceae | 7 | Bacillaceae | |
(details) | MalR_Bacillaceae | Maltose metabolism regulator MalR in Bacilliaceae | 135 | Bacillaceae | |
(details) | NrdR_Firmicutes | Nucleotide reductase regulation protein NrdR | 10 | Bacilli Clostridia |
|
(details) | NtdR_Bacillales | Neotrehalosadiamine biosynthesis regulator NtdR | 6 | Bacillales | |
(details) | RbsR_Bacillales_Lactobacillales | Predicted RbsR regulator in Bacillales and Lactobacillales | 20 | Bacillales Lactobacillales |
|
(details) | RbsR_Bacilli | Ribose regulator RbsR | 17 | Bacilli | |
(details) | RKP05499_Bacteria | Predicted sugar phosphates utilization regulator RKP05499 | 27 | Bacilli Betaproteobacteria Clostridia Gammaproteobacteria |
|
(details) | ScrR_Bacilli | Sucrose metabolism regulator ScrR | 75 | Bacilli | |
(details) | ScrR_Firmicutes_Burkholderiales | Sucrose metabolism regulator ScrR | 61 | Burkholderiales Firmicutes |
|
(details) | SigB_Bacilli | RNA polymerase general stress sigma factor | 56 | Bacilli | |
(details) | TnrA_Bacilli | Global nitrogen regulator | 9 | Bacilli | |
(details) | XylR_Bacillus_Clostridium_group | Xylose operon repressor | 16 | Bacilli | |
(details) | YvdE_Bacilli | Predicted polysaccarides utilization regulator in Bacilli | 22 | Bacilli |