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Each record below comprises a transcription factor binding site training set created by an expert curator. With each record, we provide the bindings site location with reference to a published sequence (NCBI RefSeq usually), the sequence, the gene which is affected by the binding, the evidence for the binding, any relevant articles pertaining to that site, and the transcription factor which binds the site. We also provide for download the sequence logo for the alignment, and profiles in many different formats as well as suggest recommended options in using the profiles (cut-off scores, distance from gene, taxonomy).
Details | Alignment Name | Description | Alignment Sequences |
High Scoring Hits ? |
Taxonamy |
---|---|---|---|---|---|
(details) | BH3692_Bacilli_Clostridia | Predicted transcriptional regulator of the trehalose and maltose hydrolase gene | 5 | Bacilli Clostridia |
|
(details) | BirA_Firmicutes | Biotin operon transcriptional repressor | 42 | Bacilli Clostridia |
|
(details) | CcpA_Bacilli | Carbon catabolism transcriptional regulator | 11 | Bacilli | |
(details) | CtsR_Firmicutes | Negative regulaton of class III stress genes. | 21 | Bacilli Clostridia |
|
(details) | ExuR_Bacilli_Clostridia | Predicted transcriptional regulator of uronate metabolism | 29 | Bacilli Clostridia |
|
(details) | MalR_Lactobacillales | Maltose repressor MalR | 108 | Lactobacillales | |
(details) | MalR_Streptococcus_pneumoniae | Maltose repressor MalR | 19 | Streptococcus pneumoniae | |
(details) | MsmR_Lactobacillales | MsmR repressor of the msm operon | 6 | Lactobacillales | |
(details) | MtaR_Streptococcaceae | Methionine uptake regulator | 19 | Streptococcaceae | |
(details) | NrdR_Firmicutes | Nucleotide reductase regulation protein NrdR | 10 | Bacilli Clostridia |
|
(details) | RbsR_Bacillales_Lactobacillales | Predicted RbsR regulator in Bacillales and Lactobacillales | 20 | Bacillales Lactobacillales |
|
(details) | RbsR_Bacilli | Ribose regulator RbsR | 17 | Bacilli | |
(details) | RegR_Streptococcus | RegR, modulator of the expression of virulence factors | 95 | Streptococcus | |
(details) | RKP05499_Bacteria | Predicted sugar phosphates utilization regulator RKP05499 | 27 | Bacilli Betaproteobacteria Clostridia Gammaproteobacteria |
|
(details) | ScrR_Bacilli | Sucrose metabolism regulator ScrR | 75 | Bacilli | |
(details) | ScrR_Firmicutes_Burkholderiales | Sucrose metabolism regulator ScrR | 61 | Burkholderiales Firmicutes |
|
(details) | SigB_Bacilli | RNA polymerase general stress sigma factor | 56 | Bacilli | |
(details) | SPy1297_Streptococcus | Predicted regulator of maltodextrin metabolism in Streptococcus | 5 | Streptococcus | |
(details) | TnrA_Bacilli | Global nitrogen regulator | 9 | Bacilli | |
(details) | XylR_Bacillus_Clostridium_group | Xylose operon repressor | 16 | Bacilli | |
(details) | YvdE_Bacilli | Predicted polysaccarides utilization regulator in Bacilli | 22 | Bacilli |