4
proteins |
L |
KOG3388 |
Predicted transcription regulator/nuclease, contains ParB domain |
17 hits
127 letters
sce 
645 = YKL086w (127) =
spo 
236 = SPBC106.02c (124) =
dme 
156 = 7293396 (162) =
ath 
89 = At1g31170 (154) =
hsa 
68 Hs14755300 (964)
hsa 67 Hs13899311 (238)
hsa 67 _ Hs12711660 (2382) KOG0584
hsa 60 Hs7662176 (673)
hsa 60 _ Hs22066000 (913) KOG4485
ath 60 At1g48300 (360)
dme 60 _ 7304113 (394) KOG0622
cel 
59 _ CE25842 (1900) KOG1428
cel 59 _ CE06730 (3766) KOG1428
cel 59 CE06713 (297)
dme 59 _ 7303594_2 (611) KOG3528
dme 58 _ 7299992 (566) KOG1003
dme 57 _ 7292895 (385) KOG3988
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= YKL086w
(127 letters)
Database: kyva
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
YKL086w 253 6e-68
SPBC106.02c 96 2e-20
7293396 65 3e-11
At1g31170 39 0.002
Hs14755300 31 0.46
Hs13899311 30 0.60
Hs12711660 30 0.60
Hs7662176 28 3.9
Hs22066000 28 3.9
At1g48300 28 3.9
7304113 28 3.9
CE25842 27 5.1
CE06730 27 5.1
CE06713 27 5.1
7303594_2 27 5.1
7299992 27 6.6
7292895 27 8.7
# >YKL086w
# Length = 127
#
# Score = 253 bits (645), Expect = 6e-68
# Identities = 127/127 (100%), Positives = 127/127 (100%)
#
# Query: 1 MSLQSNSVKPTEIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAG 60
# MSLQSNSVKPTEIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAG
# Sbjct: 1 MSLQSNSVKPTEIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAG 60
#
# Query: 61 ELPPVDVLGVRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYL 120
# ELPPVDVLGVRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYL
# Sbjct: 61 ELPPVDVLGVRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYL 120
#
# Query: 121 GSSLDIE 127
# GSSLDIE
# Sbjct: 121 GSSLDIE 127
#
#
# >SPBC106.02c
# Length = 124
#
# Score = 95.5 bits (236), Expect = 2e-20
# Identities = 49/112 (43%), Positives = 72/112 (63%), Gaps = 9/112 (8%)
#
# Query: 12 EIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLGVR 71
# E+ +SE+ RP+ PVLD K+++M+ TM G T +C L + AGELPPVDVL +
# Sbjct: 14 ELDMSELIRPIPPVLDMNKVNSMMETMTG-KTPPASCGLTSEDL--EAGELPPVDVLTFK 70
#
# Query: 72 VKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYLGSS 123
# G+ Y+AFGGCHRL+A+D R+ VRC+++ +P +R+YLG+S
# Sbjct: 71 KSGKPYYFAFGGCHRLRAHDEAGRK------KVRCKLVNCSPNTLRLYLGAS 116
#
#
# >7293396
# Length = 162
#
# Score = 64.7 bits (156), Expect = 3e-11
# Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 22/112 (19%)
#
# Query: 13 IPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLGVR- 71
# +P+S I+RP+ VLD QK+ +++ T+K S E+PP+D+L +
# Sbjct: 66 VPMSVIQRPIPSVLDEQKVQSLMETIKN---------------ETSEDEVPPIDLLWISG 110
#
# Query: 72 VKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYLGSS 123
# +G Y++FGGCHR +AY R R T ++ +++ +T + Y+GSS
# Sbjct: 111 SEGGDYYFSFGGCHRFEAYKRLQRPT------IKAKLVKSTLGDLYHYMGSS 156
#
#
# >At1g31170
# Length = 154
#
# Score = 38.9 bits (89), Expect = 0.002
# Identities = 29/108 (26%), Positives = 46/108 (41%), Gaps = 30/108 (27%)
#
# Query: 12 EIPLSEIRRPLAPVL--DPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLG 69
# E+PL +IRRPL D K+ ++ +++ I G P+DV+
# Sbjct: 42 ELPLEKIRRPLMRTRSNDQNKVKELMDSIRQI------------------GLQVPIDVIE 83
#
# Query: 70 VRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIR 117
# V YY F GCHR +A+ + T +RC++ T +R
# Sbjct: 84 V----DGTYYGFSGCHRYEAHQKLGLPT------IRCKIRKGTKETLR 121
#
#
# >Hs14755300
# Length = 964
#
# Score = 30.8 bits (68), Expect = 0.46
# Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
#
# Query: 6 NSVKPTEIPLSEIR--RPLAPVLDPQKI-DAMVATMKGI-PTASKTCSLEQAEAAASAGE 61
# +S+KP +IP ++ RP+AP + PQ+I AT P +S + A+A ++ +
# Sbjct: 194 SSLKPEKIPSKSLKSARPIAPAIPPQQIYTFQTATFTAASPGSSSGLTATVAQAMPNSPQ 253
#
# Query: 62 LPPV 65
# L P+
# Sbjct: 254 LKPI 257
#
#
# >Hs13899311
# Length = 238
#
# Score = 30.4 bits (67), Expect = 0.60
# Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
#
# Query: 10 PTEIPLSEIRRPLAPVLDPQKIDAM-VATMKGIPTASKTCSLEQAEAAASAGELPPVD 66
# P+E RRPL PVL PQ M V ++ +P ++ E+++ EL P D
# Sbjct: 116 PSESEKDVSRRPLVPVLSPQSCGNMSVQALQSLPYVFIPPDIQTPESSSVKEELIPQD 173
#
#
# >Hs12711660
# Length = 2382
#
# Score = 30.4 bits (67), Expect = 0.60
# Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 3/65 (4%)
#
# Query: 2 SLQSNSVKPTEIPLSEIRRPLAPVLDPQKIDAMVA-TMKGIP--TASKTCSLEQAEAAAS 58
# S S + PT +PL + P+ PV+ P ++ V+ T G+ TA L +A
# Sbjct: 1705 STTSTCLPPTNLPLGTVALPVTPVVTPGQVSTPVSTTTSGVKPGTAPSKPPLTKAPVLPV 1764
#
# Query: 59 AGELP 63
# ELP
# Sbjct: 1765 GTELP 1769
#
#
# >Hs7662176
# Length = 673
#
# Score = 27.7 bits (60), Expect = 3.9
# Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
#
# Query: 12 EIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVD---VL 68
# E+P + ++ L PV DP + +AT + S + + A+A L VD
# Sbjct: 511 ELPAACLKPALTPV-DPAEPQDALATCE-----SDEAKMRRQAGVAAAASLVSVDGEAEA 564
#
# Query: 69 GVRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRV 108
# G + L G A +RRARE Q A+F RV
# Sbjct: 565 GGESGTRALRREVGRLQAELAAERRARERQGASFAEERRV 604
#
#
# >Hs22066000
# Length = 913
#
# Score = 27.7 bits (60), Expect = 3.9
# Identities = 26/94 (27%), Positives = 41/94 (42%), Gaps = 8/94 (8%)
#
# Query: 10 PTEIPLSEIRRPLAPVLDPQ----KIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPV 65
# P + + +++ PL P DPQ D A + + + T + A +G PP+
# Sbjct: 704 PDVLQVHDVKTPLGPGQDPQGEGPNPDHSCAEF--LHSLTLTGFTPKNHAKTVSGGRPPL 761
#
# Query: 66 DVLGVRVKGQTLYYAFGGCHRLQAYDRRARETQN 99
# LG R G+ +Y GG R + R ETQ+
# Sbjct: 762 GFLGKRKPGKHPHY--GGFSRHHRWLRIHSETQS 793
#
#
# >At1g48300
# Length = 360
#
# Score = 27.7 bits (60), Expect = 3.9
# Identities = 15/47 (31%), Positives = 25/47 (52%)
#
# Query: 2 SLQSNSVKPTEIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTC 48
# S S+ K + +S +R PVL+P + +A VAT+ I + +C
# Sbjct: 173 SSDSDCDKGKVVDMSSLRNKAKPVLEPLQPEATVATLPRIQEDAISC 219
#
#
# >7304113
# Length = 394
#
# Score = 27.7 bits (60), Expect = 3.9
# Identities = 13/32 (40%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
#
# Query: 68 LGVRVKGQTLYYAFGGCHRLQAYDRRARETQN 99
# L ++V G T ++ GC LQAYDR ++ +N
# Sbjct: 181 LELKVTG-TSFHVGSGCSELQAYDRAIKKAKN 211
#
#
# >CE25842
# Length = 1900
#
# Score = 27.3 bits (59), Expect = 5.1
# Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
#
# Query: 48 CSLEQAEAAASAGELPPV--DVL----GVRVKGQTLYYAFGGCHRLQAYDRRARETQNAA 101
# CS+ Q G+LP + +L +++K +T+Y F RL A A T+ A
# Sbjct: 1571 CSMSQNGTTVQRGQLPYLIYSILDQSNSLQIKQETIYDTFTLLLRLMANKIGAAITEGGA 1630
#
# Query: 102 FPVRCRVL 109
# P C+ L
# Sbjct: 1631 LPACCQHL 1638
#
#
# >CE06730
# Length = 3766
#
# Score = 27.3 bits (59), Expect = 5.1
# Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
#
# Query: 48 CSLEQAEAAASAGELPPV--DVL----GVRVKGQTLYYAFGGCHRLQAYDRRARETQNAA 101
# CS+ Q G+LP + +L +++K +T+Y F RL A A T+ A
# Sbjct: 1635 CSMSQNGTTVQRGQLPYLIYSILDQSNSLQIKQETIYDTFTLLLRLMANKIGAAITEGGA 1694
#
# Query: 102 FPVRCRVL 109
# P C+ L
# Sbjct: 1695 LPACCQHL 1702
#
#
# >CE06713
# Length = 297
#
# Score = 27.3 bits (59), Expect = 5.1
# Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
#
# Query: 37 TMKGIPTASKTCSLEQAEAAASAGELPPVDVLGVRVKG 74
# TMK IPTASK L + E+P ++LG+ + G
# Sbjct: 5 TMK-IPTASKLLKLPEDSKVGEEVEIPICNILGLHLTG 41
#
#
# >7303594_2
# Length = 611
#
# Score = 27.3 bits (59), Expect = 5.1
# Identities = 15/71 (21%), Positives = 33/71 (46%)
#
# Query: 12 EIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLGVR 71
# ++ L ++ RP P LD + A + + T ++ ++ ++ +L D + +R
# Sbjct: 84 QLCLGKLPRPTGPPLDESEKPAAEQKLNRLKTEAENKRIKIKNLKSALEKLDITDNIDIR 143
#
# Query: 72 VKGQTLYYAFG 82
# ++ L YA G
# Sbjct: 144 IRQAELEYALG 154
#
#
# >7299992
# Length = 566
#
# Score = 26.9 bits (58), Expect = 6.6
# Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
#
# Query: 21 PLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPP 64
# P P P+++ AM + A+ E AEAAA+AGE P
# Sbjct: 347 PKLPTPTPEELAAMEEA-RAAAEAAAAAEAEAAEAAAAAGEAGP 389
#
#
# >7292895
# Length = 385
#
# Score = 26.6 bits (57), Expect = 8.7
# Identities = 12/34 (35%), Positives = 19/34 (55%)
#
# Query: 9 KPTEIPLSEIRRPLAPVLDPQKIDAMVATMKGIP 42
# KP +PLS++ R V+ P ++AM + IP
# Sbjct: 275 KPNGVPLSKVERSSDQVIKPVNLEAMSKWVGQIP 308
#
#
Database: kyva
Posted date: Nov 8, 2002 2:36 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.318 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,098,775
Number of Sequences: 112920
Number of extensions: 382760
Number of successful extensions: 960
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 24
length of query: 127
length of database: 47,500,486
effective HSP length: 103
effective length of query: 24
effective length of database: 35,869,726
effective search space: 860873424
effective search space used: 860873424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)