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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9798210          
refSNP ID: rs9798210
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13626760 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9798210 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13626760WI_SSAHASNP|chr2.NT_022171.13_11396011fwd/TA/Gcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaagattgctccat11/05/0311/22/03119Genomicunknown
ss35215875SSAHASNP|TA-079.chr2_108788505fwd/TA/Gcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaagattgctccat03/11/05125Genomicunknown
ss78294404HGSV|Cor12878_SNV_20070510.chr2_108788505fwd/TA/Gcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaagattgctccat10/17/0710/18/07129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9798210|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=129
 acaaaactta gctgggcgtg gtggcgagcg cctgtaatcc cagctactcg ggaggctgag
 gcaggagaat cgcttgaacc tgggaggtgg aggttgcagt gagccaaaat tgcgccactg
 cactccagct ggtcgacaag agcgaaactc catctcaaaa aaaaaaaaaa aaaaaaaaCT
 TAAAAGTCAA GATTGCggcc gggcgcggtg gctcacgcct gtaatcccag cactttggga
 ggccgaggcg ggtggatcat gaggtcagga gatcgagacc atcctggcta acaaggtgaa
 accccgtctc tactaaaaat acaaaaaatt agccgggcgc ggtggcgggc gcctgtagtc
 ccagctactg gggaggctga ggcaggagaa tggcgtgaac ccgggaagcg gagcttgcag
 tgagcagaga ttgcgccact gcagtccgca gtccggcctg ggcgacagag cgagactccg
 tctcaaaaaa aaaaaaaaaa
 R
 aaaaaaaaaa aaaagtcaag attgctccat gatccatggg ctgcagaatg gacattgtgt
 tagctggcag gaaaacatta atctacttgt acatctccat cagagctctt gagtgactag
 gtgcattgtc aatgagcagc agaatttgaa aggaatcatt tttctggaca aatggcctag
 cttttggctt atcttggttt ttgatatgcc ttcctcacta agcttaatca tttctagctt
 tgatttaaag tgagagacat gcaactcttc ctttcatgtg aacacttaga agcccttgta
 ggattattaa ggtgcctaat ttcagtattg ttgtctctag gtgaacaggg aactccgaga
 agagggagag agactgggaa tggtgggtca gtgaagcagt cagatagaac agacacattc
 atcaattaag tttgctgtct tgtatgagca tggcttgcgg taccccaaaa caattacaat
 aagtaacatc aaagatcact

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9798210 maps exactly once on NCBI human chromosome 2
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
2NW_001838822.1807769102928396plusAalt_assembly_8HuRefHuRefview500
2NW_921374.1794335103639967plusGalt_assembly_1CeleraCeleraview500
2NT_022171.1411399572108696419plusGref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022171
dbSNP Blast Analysis
GenBank HTGS Finished:
AC010095.6 AC073415.6 NC_000002.10

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .