R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|12407755|gb|AAG53638.1|AF291714_1 (AF291714) initiation factor 3d
[Arabidopsis thaliana]
Length = 418
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 418
0 150 300
Plus Strand HSPs:
Score = 305 (107.4 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 59/76 (77%), Positives = 64/76 (84%), Frame = +1
Query: 28 SIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPSEGAEGG 207
SIVDLCMKL+EGKYVLVKDPSKPQVRIYEVP DAFENDYVEEPLPEDEQVQP E EG
Sbjct: 339 SIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEENTEGA 398
Query: 208 EATTT-TNDVEDKQID 252
EA+ T + E+K+ D
Sbjct: 399 EASVAATKETEEKKAD 414
>gi|6685535|sp|P56820|IF37_ARATH PUTATIVE EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT 7 (EIF-3 ZETA) >gi|7486971|pir||T10640
hypothetical protein T13K14.140 - Arabidopsis thaliana
>gi|5262788|emb|CAB45893.1| (AL080282) translation initiation
factor eIF3-like protein [Arabidopsis thaliana]
>gi|7268895|emb|CAB79098.1| (AL161554) translation initiation
factor eIF3-like protein [Arabidopsis thaliana]
Length = 591
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 591
0 150 300 450
Plus Strand HSPs:
Score = 305 (107.4 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 59/76 (77%), Positives = 64/76 (84%), Frame = +1
Query: 28 SIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPSEGAEGG 207
SIVDLCMKL+EGKYVLVKDPSKPQVRIYEVP DAFENDYVEEPLPEDEQVQP E EG
Sbjct: 512 SIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEENTEGA 571
Query: 208 EATTT-TNDVEDKQID 252
EA+ T + E+K+ D
Sbjct: 572 EASVAATKETEEKKAD 587
>gi|10176887|dbj|BAB10117.1| (AB011475) eukaryotic translation initiation
factor 3 subunit 7 [Arabidopsis thaliana]
Length = 588
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 588
0 150 300 450
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 4.0e-25, P = 4.0e-25
Identities = 61/82 (74%), Positives = 69/82 (84%), Frame = +1
Query: 28 SIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPSEGAEGG 207
SIVDLCMKL+EGKYVLVKDPSKPQVRIYEVPADAF+NDYVEEPLPEDEQVQPP E + G
Sbjct: 507 SIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPADAFDNDYVEEPLPEDEQVQPPEENTDAG 566
Query: 208 EAT---TTTN-DVEDKQIDGQA 261
T ++TN VEDK+ + +A
Sbjct: 567 AETNGVSSTNVAVEDKKSEVEA 588
>gi|4503523 ref|NP_003744.1| eukaryotic translation initiation factor 3,
subunit 7 (zeta, 66/67kD) [Homo sapiens] >gi|11418048
ref|XP_009954.1| eukaryotic translation initiation factor 3,
subunit 7 (zeta, 66/67kD) [Homo sapiens]
>gi|6685526|sp|O15371|IF37_HUMAN EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT 7 (EIF-3 ZETA) (EIF3 P66)
>gi|2351378|gb|AAD03466.1| (U54558) translation initiation factor
eIF3 p66 subunit [Homo sapiens] >gi|4200328|emb|CAA18440.1|
(AL022313) dJ1119A7.2 (eukaryotic translation initiation factor 3,
subunit 7 (zeta, 66/67kD) (EIF3-P66)) [Homo sapiens]
>gi|12653123|gb|AAH00328.1|AAH00328 (BC000328) eukaryotic
translation initiation factor 3, subunit 7 (zeta, 66/67kD) [Homo
sapiens] >gi|12653399|gb|AAH00469.1|AAH00469 (BC000469) eukaryotic
translation initiation factor 3, subunit 7 (zeta, 66/67kD) [Homo
sapiens]
Length = 548
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 548
0 150 300 450
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/54 (42%), Positives = 37/54 (68%), Frame = +1
Query: 31 IVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPSE 192
++D+CMKL EGKY+++KDP+K +R+Y +P F +D EE E+E+ + E
Sbjct: 494 VIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEEEEEEEEE 547
>gi|9055214 ref|NP_061219.1| eIF3 p66 [Mus musculus]
>gi|6685529|sp|O70194|IF37_MOUSE EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT 7 (EIF-3 ZETA) (EIF3 P66)
>gi|2992164|dbj|BAA25327.1| (AB012580) eIF3 p66 [Mus musculus]
Length = 547
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 547
0 150 300 450
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 22/54 (40%), Positives = 37/54 (68%), Frame = +1
Query: 31 IVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPSE 192
++D+CMKL EGKY+++KDP+K +R+Y +P F ++ EE E+E+ + E
Sbjct: 493 VIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSEEDEEDEEEEEEEEEEEE 546
>gi|7299570|gb|AAF54756.1| (AE003694) CG4810 gene product [Drosophila
melanogaster]
Length = 551
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 551
0 150 300 450
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 0.00011, P = 0.00011
Identities = 21/46 (45%), Positives = 35/46 (76%), Frame = +1
Query: 31 IVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPED 168
++DL M+ +GKY+++KDP+KP +R+Y+VP +AF++D EE D
Sbjct: 498 LIDLVMRQPDGKYLIMKDPNKPMIRLYDVPENAFDSDGDEEEESSD 543
>gi|7141239|gb|AAF37264.1|AF220363_1 (AF220363) eukaryotic translation
initiation factor 3 p66 subunit [Drosophila melanogaster]
Length = 560
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 560
0 150 300 450
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 0.00011, P = 0.00011
Identities = 21/50 (42%), Positives = 37/50 (74%), Frame = +1
Query: 31 IVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQ 180
I+DL MK +GKY+++KDP+KP +R+Y++P + F++D ++ +DE Q
Sbjct: 501 IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ 550
>gi|7301022|gb|AAF56158.1| (AE003744) eIF-3p66 gene product [Drosophila
melanogaster]
Length = 560
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 560
0 150 300 450
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 0.00011, P = 0.00011
Identities = 21/50 (42%), Positives = 37/50 (74%), Frame = +1
Query: 31 IVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQ 180
I+DL MK +GKY+++KDP+KP +R+Y++P + F++D ++ +DE Q
Sbjct: 501 IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ 550
>gi|7492557|pir||T38999 probable elongation initation factor subunit - fission
yeast (Schizosaccharomyces pombe) >gi|4056551|emb|CAA22586.1|
(AL034583) elongation initation factor subunit; negative regulator
moe1.; microtubule destabilising protein [Schizosaccharomyces
pombe]
Length = 567
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 567
0 150 300 450
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 0.00035, P = 0.00035
Identities = 20/36 (55%), Positives = 30/36 (83%), Frame = +1
Query: 28 SIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFE 135
+I D+C+K+ +GKYVLVKDP++P +R+Y VP + FE
Sbjct: 519 TIADVCLKMPDGKYVLVKDPNRPILRLYSVPPNTFE 554
>gi|6685653|sp|O94236|MOE1_SCHPO MICROTUBULE DESTABILIZING PROTEIN MOE1
>gi|11281983|pir||T43555 Ras pathway interacting protein Moe1 -
fission yeast (Schizosaccharomyces pombe)
>gi|4176721|gb|AAD08893.1| (AF038568) negative regulator Moe1
[Schizosaccharomyces pombe]
Length = 567
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 567
0 150 300 450
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 0.00035, P = 0.00035
Identities = 20/36 (55%), Positives = 30/36 (83%), Frame = +1
Query: 28 SIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFE 135
+I D+C+K+ +GKYVLVKDP++P +R+Y VP + FE
Sbjct: 519 TIADVCLKMPDGKYVLVKDPNRPILRLYSVPPNTFE 554
>gi|267549|sp|P30642|IF37_CAEEL PUTATIVE EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT 7 (EIF-3 ZETA) >gi|102510|pir||S24459 hypothetical
protein R08D7.3 - Caenorhabditis elegans
>gi|3878936|emb|CAA78049.1| (Z12017) predicted using
Genefinder~cDNA EST yk105g8.3 comes from this gene~cDNA EST
yk105g8.5 comes from this gene~cDNA EST yk152a2.3 comes from this
gene~cDNA EST yk152a2.5 comes from this gene~cDNA EST yk490b3.3
comes from this gene~cDNA EST yk490b3>
Length = 570
Frame 1 hits (HSPs): _____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 570
0 150 300 450
__________________
Annotated Domains:
PRODOM PD025385: O15371(1) O70194(1) YNE3(1) 3..555
__________________
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.0060, P = 0.0060
Identities = 20/50 (40%), Positives = 32/50 (64%), Frame = +1
Query: 31 IVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYV--EEPLPEDEQ 174
++D CMK GKY+L+KDP P +R+Y +P FE++ +E +D+Q
Sbjct: 521 VIDSCMKQKPGKYLLMKDPQSPVIRLYSLPEGTFESERESSDEENSDDDQ 570
>gi|8843986|gb|AAF80206.1|AF282853_5 (AF282853) CagP [Helicobacter pylori]
Length = 110
Frame 3 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 8.8, P = 1.0
Identities = 24/61 (39%), Positives = 32/61 (52%), Frame = +3
Query: 399 LKQNFLVFFFYATAVYDLQTLAY-LSGTTKAVISFKIVLRSFGLRVIIVVYKFPCLHRVI 575
LKQNFL F + D +L Y L + VI F I L S+G VI+V Y L +I
Sbjct: 4 LKQNFLQFKYSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILV-YPILFLFALI 62
Query: 576 LR 581
++
Sbjct: 63 IK 64
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.359 0.162 0.621
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.355 0.156 0.536
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.344 0.156 0.525
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.156 0.576
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.154 0.519
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.156 0.560
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 200 198 10. 76 3 12 22 0.093 35
31 0.10 38
+2 0 200 199 10. 77 3 12 22 0.093 35
31 0.10 38
+1 0 200 199 10. 77 3 12 22 0.093 35
31 0.10 38
-1 0 200 198 10. 76 3 12 22 0.093 35
31 0.10 38
-2 0 200 198 10. 76 3 12 22 0.093 35
31 0.10 38
-3 0 200 199 10. 77 3 12 22 0.093 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 12
No. of states in DFA: 595 (59 KB)
Total size of DFA: 223 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 198.73u 1.22s 199.95t Elapsed: 00:00:34
Total cpu time: 198.76u 1.24s 200.00t Elapsed: 00:00:34
Start: Fri Jan 18 12:48:14 2002 End: Fri Jan 18 12:48:48 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000