BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PI1717
(381 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150003007|ref|YP_001297751.1| major outer membrane prote... 184 6e-45
gi|156859581|gb|EDO53012.1| hypothetical protein BACUNI_030... 147 9e-34
gi|53715321|ref|YP_101313.1| major outer membrane protein O... 147 1e-33
gi|156110885|gb|EDO12630.1| hypothetical protein BACOVA_017... 144 8e-33
gi|29345828|ref|NP_809331.1| outer membrane porin F precurs... 141 8e-32
gi|153808039|ref|ZP_01960707.1| hypothetical protein BACCAC... 136 3e-30
gi|156112209|gb|EDO13954.1| hypothetical protein BACOVA_003... 130 2e-28
gi|153809080|ref|ZP_01961748.1| hypothetical protein BACCAC... 129 2e-28
gi|29349260|ref|NP_812763.1| major outer membrane protein O... 129 2e-28
gi|29348270|ref|NP_811773.1| putative outer membrane protei... 125 5e-27
gi|156110981|gb|EDO12726.1| hypothetical protein BACOVA_015... 119 3e-25
gi|29345476|ref|NP_808979.1| major outer membrane protein O... 117 1e-24
gi|60680803|ref|YP_210947.1| putative outer membrane protei... 105 6e-21
gi|53712590|ref|YP_098582.1| putative outer membrane protei... 104 9e-21
gi|53712963|ref|YP_098955.1| outer membrane porin F precurs... 102 3e-20
gi|53712971|ref|YP_098963.1| major outer membrane protein O... 99 4e-19
gi|60681175|ref|YP_211319.1| putative outer membrane protei... 99 4e-19
gi|57918612|gb|AAW59418.1| outer membrane protein HMP [Porp... 97 2e-18
gi|150007308|ref|YP_001302051.1| outer membrane protein Omp... 94 1e-17
gi|53828383|dbj|BAD54750.1| hypothetical protein [Porphyrom... 94 1e-17
gi|34540489|ref|NP_904968.1| immunoreactive 42 kDa antigen ... 94 2e-17
gi|154490277|ref|ZP_02030538.1| hypothetical protein PARMER... 92 5e-17
gi|150006545|ref|YP_001301289.1| major outer membrane prote... 92 7e-17
gi|156860614|gb|EDO54045.1| hypothetical protein BACUNI_020... 86 4e-15
gi|156107095|gb|EDO08840.1| hypothetical protein BACOVA_046... 82 6e-14
gi|53828382|dbj|BAD54749.1| hypothetical protein [Porphyrom... 80 2e-13
gi|34540490|ref|NP_904969.1| immunoreactive 43 kDa antigen ... 80 2e-13
gi|5759277|gb|AAD51067.1|AF175714_1 immunoreactive 43kD ant... 78 7e-13
gi|53714190|ref|YP_100182.1| putative outer membrane protei... 77 3e-12
gi|29347201|ref|NP_810704.1| outer membrane protein [Bacter... 69 5e-10
gi|153807490|ref|ZP_01960158.1| hypothetical protein BACCAC... 62 8e-08
gi|156107996|gb|EDO09741.1| hypothetical protein BACOVA_056... 61 1e-07
gi|156860604|gb|EDO54035.1| hypothetical protein BACUNI_020... 58 9e-07
gi|126647748|ref|ZP_01720253.1| peptidoglycan associated pe... 57 2e-06
>gi|150003007|ref|YP_001297751.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
gi|149931431|gb|ABR38129.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
Length = 399
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 140/409 (34%), Positives = 198/409 (48%), Gaps = 50/409 (12%)
Query: 2 VLAFAGVSMAGFAQD----------------EVPTKKYSVATNSFWSNWFVQAGIDWNAW 45
+LA A +S FAQ EVP KY V TN F+ NWF G
Sbjct: 7 LLAAASLSSVAFAQQKSNSQNVLVGESVDVMEVPVDKYKVETNHFFDNWFFSVGGGAQVL 66
Query: 46 YSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSK- 104
+ Q +DL FK R P + ++IGKWFTPGLGLR++ G+ K + SK
Sbjct: 67 FGDQ---SDL--GKFKK-RIAPALQISIGKWFTPGLGLRLQYSGLQSKSFSSEPSAYSKP 120
Query: 105 -------VDNGNKYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYYAT- 156
+ Y G +FN++NM GY+E+R+ D +PFVG G +H Y A
Sbjct: 121 HMLSEGYYQDKFNYMNLHGDILFNVSNMIAGYNEDRIYDFVPFVGFG----FAHSYDAPR 176
Query: 157 ----GLSAGVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGL 212
+ G+ + L+ L E E DG G D +G+
Sbjct: 177 RNSLAFNFGIINTFHLASAWDLNLELYGMGTENKFDGKTTSKGP------DFMAGATVGI 230
Query: 213 QFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAEAENARLREALANQKPVETISE-- 270
+ + G++ PD+DAI A + +DA+N+ L +N +L+ LANQ P E ++E
Sbjct: 231 TYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQLKAQLANQ-PTEVVTEQV 289
Query: 271 SVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDNNN-NLLVTGYADSATGTPQR 329
+V ++ P SVFF I + + VN++ +A DN L VTGYADS TG+
Sbjct: 290 TVNQIAPAPQSVFFQIG-SAVLPTNSTVNLQQIADLVKDNPGLKLKVTGYADSDTGSAAW 348
Query: 330 NQWLSEERAKTLANELVNMGVQSNKITQVGKGGVETLTPISFNRRATVQ 378
N+ LSE+RA +ANELV +GV N + G GGV TLTP +FNRR ++
Sbjct: 349 NKQLSEDRANNVANELVKLGVNKNNLIISGMGGVNTLTPPAFNRRVIIE 397
>gi|156859581|gb|EDO53012.1| hypothetical protein BACUNI_03025 [Bacteroides uniformis ATCC 8492]
Length = 392
Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 131/410 (31%), Positives = 197/410 (48%), Gaps = 53/410 (12%)
Query: 1 MVLAFAGVSMAGFAQDEVPT----------KKYSVATNSFWSNWFVQAGIDWNAWYSGQE 50
M+LA AGVS AQ + KY V TN FWSNWF G A +
Sbjct: 1 MLLALAGVSSVAMAQQKTEVVEEFGVIQVQDKYQVITNPFWSNWFFSIGGGAEATF---- 56
Query: 51 HGADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGK----RVGDNDAPTSKVD 106
G + K F R +P + AIGKWFTPGLG+R++ G+ + G + ++VD
Sbjct: 57 -GDNDKAGSFGK-RISPTLNFAIGKWFTPGLGVRLQYSGLQARGYTYDAGADYVKGTQVD 114
Query: 107 NGN-----KYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYY-----AT 156
+G Y G MFNL +F GY+++R+ +IIP+VGAG +H+Y A
Sbjct: 115 DGYYKQRFDYMNLHGDVMFNLNALFGGYNQHRVYEIIPYVGAG----FTHNYTKPHREAL 170
Query: 157 GLSAGVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNL 216
++AG+ R+S + E E DG + G+ G+D L +GL +
Sbjct: 171 SVNAGIINRFRISNAIDINLELSAMGVEDKFDG--EVGGDHGYDG---VLSATVGLTYRF 225
Query: 217 GKTGWEK-TPDLDAINAQHQAALDALNSRLRDAEAENARLREAL--ANQKPVETISES-- 271
G+ + P L + Q L A+ ++L + A N +L+ AL A +PV ++E+
Sbjct: 226 PARGFRRPMPQLIS-----QVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETEV 280
Query: 272 -VKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVD-NNNNLLVTGYADSATGTPQR 329
V + P +VFFNI + S ++ +N+ LA N V GYADSATGTP
Sbjct: 281 IVPDPDIAPRTVFFNIGSAEV-SPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF 339
Query: 330 NQWLSEERAKTLANELVNM-GVQSNKITQVGKGGVETLTPISFNRRATVQ 378
N+ LS +RA+ + + LV G+ ++++ GGV+ NR V+
Sbjct: 340 NKELSLKRAQAVVDVLVKQYGIPADRLKVDAGGGVDKFGQPILNRVVLVK 389
>gi|53715321|ref|YP_101313.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
gi|60683254|ref|YP_213398.1| putative major outer membrane protein [Bacteroides fragilis NCTC
9343]
gi|13446379|gb|AAK20932.1| major outer membrane protein OmpA [Bacteroides fragilis]
gi|52218186|dbj|BAD50779.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
gi|60494688|emb|CAH09489.1| putative major outer membrane protein [Bacteroides fragilis NCTC
9343]
Length = 395
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 128/402 (31%), Positives = 195/402 (48%), Gaps = 39/402 (9%)
Query: 1 MVLAFAGVSMAGFAQDEVPT--------KKYSVATNSFWSNWFVQAGIDWNAWYSGQEHG 52
M+LA AGV+ AQ T KY V TN FW NWF G A + +H
Sbjct: 6 MLLALAGVTSVASAQQTTITGYEVIQVQDKYQVITNPFWDNWFFSIGGGAEALFGDNDH- 64
Query: 53 ADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAP----TSKVDNG 108
V F+D R +P + +A+GKWFTPGLGLR++ G+ G+ ++ + K+ NG
Sbjct: 65 ----VGKFRD-RISPTLNVAVGKWFTPGLGLRLQYSGLQGRGFAGSETADFVKSGKLANG 119
Query: 109 N-----KYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYY-ATGLSAGV 162
Y G MFNL +F GY+ +R+ +IIP++GAG S S + A ++AG+
Sbjct: 120 YYKQKFNYMNLHGDVMFNLNALFGGYNSHRVYEIIPYLGAGFTHSYSKPHREAFAMNAGI 179
Query: 163 QASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWE 222
R+S + E G E DG + G G+D + + GL + G+
Sbjct: 180 INRFRVSSAVDINIEIGGMLAEDKFDG--EIGGKHGYDGVAS---LTAGLTYRFPARGFA 234
Query: 223 KTPDLDAINAQHQAALDALNSRLRDAEAENARLREAL--ANQKPVETISESVKELIST-- 278
+ P I+ + L + ++ D A N L++ L A +PV ++E V +
Sbjct: 235 R-PMPQIIS---EIELANMRRQMNDMAAANQSLQQQLVDAQNQPVAEVAEQVVVTDANIA 290
Query: 279 PISVFFNIDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERA 338
P +VFF I + ++ ++++ AK + V GYADSATGTP N+ LS++RA
Sbjct: 291 PRTVFFTIGSSELSPREEMNLSYLAAKMKEFPDTQYTVYGYADSATGTPAFNKELSQKRA 350
Query: 339 KTLANELV-NMGVQSNKITQVGKGGVETL-TPISFNRRATVQ 378
+ + N LV GV S+++ GGV+ PI NR V+
Sbjct: 351 QAVVNALVKKYGVDSSRLKVDAGGGVDKFGKPIYLNRVVLVE 392
>gi|156110885|gb|EDO12630.1| hypothetical protein BACOVA_01772 [Bacteroides ovatus ATCC 8483]
Length = 379
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 123/380 (32%), Positives = 187/380 (49%), Gaps = 41/380 (10%)
Query: 1 MVLAFAGVSMAGFAQD-EVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNP 59
+ + A VS+ AQ+ E K Y V TN F +NWF+ G+ ++ + AD
Sbjct: 6 LFILLAAVSVCLPAQEKENAAKSYRVETNRFGANWFISGGVGAQMYFGDNDGKADFGK-- 63
Query: 60 FKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNG---NKYWIAQ- 115
R P + +A+GKWFTPG+GLRV G+ K N A VD G N Y+ +
Sbjct: 64 ----RLAPALDIAVGKWFTPGIGLRVAYNGLQAKGATPN-ANGPLVDGGQYSNGYYKEKW 118
Query: 116 ------GQAMFNLTNMFLGYSENRLLDIIPFVGAG-VGRSMSHDYYATGLSAGVQASARL 168
G M NL+NM GY E+RL IP+VGAG V Y G++AG+ RL
Sbjct: 119 NVMNFHGDVMLNLSNMICGYREDRLYSFIPYVGAGFVHSGKGAGYDELGINAGLINRFRL 178
Query: 169 SKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLD 228
S L E +G +GN G + + +G+ + K GW+ P +
Sbjct: 179 SSALDLNVELRGLLMKGS-------FGNSGPEGLAG---LTVGVTYKFKKRGWDAVPTVP 228
Query: 229 AINAQHQAALDALNSRLRDAEAENARLREALA---NQKPVETISESVKELISTP-ISVFF 284
+ ++ L+ + R+ + EN L+ L N+KP E I + KE P + V F
Sbjct: 229 MVP---ESQLNDMRDRVNALKGENESLKRDLVEARNKKP-EVIVK--KEAGFVPRLVVVF 282
Query: 285 NIDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANE 344
NI K+NI S+++ +N+ A+AK + +TGYAD TG+ + N LS++RA+ + +
Sbjct: 283 NIGKSNI-SKREYMNIEAMAKGIKATDKVFTITGYADKGTGSAEYNMKLSKKRAEAVRDL 341
Query: 345 LVN-MGVQSNKITQVGKGGV 363
+VN GV ++++ KGGV
Sbjct: 342 MVNEFGVPASQLKVDYKGGV 361
>gi|29345828|ref|NP_809331.1| outer membrane porin F precursor [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337721|gb|AAO75525.1| outer membrane porin F precursor [Bacteroides thetaiotaomicron
VPI-5482]
Length = 372
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 119/376 (31%), Positives = 186/376 (49%), Gaps = 43/376 (11%)
Query: 6 AGVSMAGFAQDEVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRS 65
A V ++ + + K Y+V TN F +NWF+ G+ ++ + AD R
Sbjct: 4 ASVCLSAQEKGKTEGKAYTVETNRFGANWFISGGVGGQMYFGDNDGKADFGK------RI 57
Query: 66 NPGVALAIGKWFTPGLGLRVKAQGIWGKRVGD--NDAPTSKVDNGNKYWIAQ-------G 116
P + +A+GKWFTPG+GLRV G+ K ND T N Y+ + G
Sbjct: 58 APALDIAVGKWFTPGIGLRVAYNGLQAKGAAPSANDLYTKGGKYSNGYYKQKWNMANFHG 117
Query: 117 QAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYYAT-GLSAGVQASARLSKFTRLY 175
+FNL+NMF GY+E+RL IP+VGAGV S S + G++AG+ R+S
Sbjct: 118 DVLFNLSNMFCGYNEDRLYSFIPYVGAGVALSWSEPHQQNLGINAGLINRFRVSD----- 172
Query: 176 AEAGWNRYEGDLDGY---DQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAINA 232
W+ +L G D + G S + V +G+ + K G+ P + +
Sbjct: 173 ---AWD-INLELRGLLMKDAFGGT----SKEGMAGVTVGVTYKFKKRGFNAVPTVPMVP- 223
Query: 233 QHQAALDALNSRLRDAEAENARLREALA---NQKPVETISESVKELISTPISVFFNIDKT 289
++ LD + +RL + EN L+ L N+KP E I + + + V FNI K+
Sbjct: 224 --ESQLDDMRNRLNSLKGENESLKRDLVEARNKKP-EVIVKKEGGFVPR-LVVVFNIGKS 279
Query: 290 NIASQKDLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVN- 347
NI S+++ +N+ A+AK N VTGYAD TG+ + N LS++RA+ + + +VN
Sbjct: 280 NI-SKREYMNIEAMAKGIKANPEKTFTVTGYADKGTGSAEYNMKLSKKRAEAVRDLMVNE 338
Query: 348 MGVQSNKITQVGKGGV 363
GV ++++ KGGV
Sbjct: 339 FGVPASQLKVDYKGGV 354
>gi|153808039|ref|ZP_01960707.1| hypothetical protein BACCAC_02325 [Bacteroides caccae ATCC 43185]
gi|149129648|gb|EDM20862.1| hypothetical protein BACCAC_02325 [Bacteroides caccae ATCC 43185]
Length = 380
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 38/378 (10%)
Query: 1 MVLAFAGVSMAGFAQDEVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPF 60
++LA A V + + E K Y+V TN F +NWF+ GI ++ + AD
Sbjct: 8 ILLAAASVCLPA-QEKENAAKSYTVETNRFGANWFISGGIGAQMYFGDNDGKADFGK--- 63
Query: 61 KDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDN-DAPTSK---VDNG---NKYWI 113
R P + +A+GKWFTPG+GLR+ G+ K + DA +K NG K+ +
Sbjct: 64 ---RLAPALDIAVGKWFTPGIGLRLAYNGLQAKGAAPSADARYAKGGTYSNGYYKQKWNM 120
Query: 114 A--QGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYYAT-GLSAGVQASARLSK 170
A G +FNL+NM GY+E+R+ IP+VGAG+ S S G++AG+ RLS
Sbjct: 121 ANFHGDVLFNLSNMLCGYNEDRIYSFIPYVGAGLAVSWSEPREKNLGINAGLINRFRLSP 180
Query: 171 FTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAI 230
L E + G S + V +G+ + K GW P + +
Sbjct: 181 ALDLNVELRGLLMKNAFGG----------ASKEGMGGVTVGVTYKFKKRGWNAVPTVPMV 230
Query: 231 NAQHQAALDALNSRLRDAEAENARLREALA---NQKPVETISESVKELISTPISVFFNID 287
++ L+ + R+ + EN L+ L N+KP E I + + + V FNI
Sbjct: 231 P---ESQLNDMRDRVNALKGENESLKRDLVEARNKKP-EVIVKKEGGFVPR-LVVVFNIG 285
Query: 288 KTNIASQKDLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKTLANELV 346
K+NI S+++ +N+ A+AK N + VTGYAD TG+ + N LS++RA+ + + +V
Sbjct: 286 KSNI-SKREYMNIEAMAKGIKANPDKTFTVTGYADKGTGSAEYNMKLSKKRAEAVRDLMV 344
Query: 347 N-MGVQSNKITQVGKGGV 363
N GV ++++ KGGV
Sbjct: 345 NEFGVPASQLKVDYKGGV 362
>gi|156112209|gb|EDO13954.1| hypothetical protein BACOVA_00345 [Bacteroides ovatus ATCC 8483]
Length = 395
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 119/404 (29%), Positives = 183/404 (45%), Gaps = 43/404 (10%)
Query: 1 MVLAFAGVSMAGFAQDEVPTK---------KYSVATNSFWSNWFVQAGIDWNAWYSGQEH 51
M+LAFAGV+ AQ + KY V TN FWSNWF G Y +H
Sbjct: 6 MLLAFAGVASVASAQQTMTVTEYEVIQVQDKYQVITNPFWSNWFFSVGGGAQVLYGNNDH 65
Query: 52 GADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKV----DN 107
+ F+D R P +++GKW TPG GLR++ G+ K ++ V ++
Sbjct: 66 -----IGKFRD-RVAPTFNVSVGKWVTPGFGLRLQYSGLQAKGFTTSENANYVVGGPRED 119
Query: 108 GN-----KYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMS--HDYYATGLSA 160
G+ Y G M NL +F GY+ NR+ +IIP++GAG + S H AT +A
Sbjct: 120 GSYKQRWDYMNLHGDLMINLNALFGGYNPNRVYEIIPYIGAGWAHAYSRPHTNSAT-FNA 178
Query: 161 GVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTG 220
G+ RLS L E EG DG + G +D L +G+ + G
Sbjct: 179 GIINRFRLSNAVDLNLELSATGLEGKFDGE-----HGGKPDYDGILGATIGVTYYFPTRG 233
Query: 221 WEK-TPDLDAINAQHQAALDALNSRLRDAEAEN-ARLREALANQKPVETISESVKELIST 278
+++ P + + + L+ + +++ A N ++ Q+PVE + T
Sbjct: 234 FQRPVPQIIS-----ELELNQMRNQMNAMAAANMQLQQQLANAQQPVEVEDTEEVVITDT 288
Query: 279 ---PISVFFNIDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSE 335
P +VFF I ++ Q+++ +K N + GYADSATGTP NQ LS
Sbjct: 289 NIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNTTYTINGYADSATGTPAFNQKLSL 348
Query: 336 ERAKTLANELV-NMGVQSNKITQVGKGGVETLTPISFNRRATVQ 378
ERA+ + + LV G+ ++++ GGV+ NR V+
Sbjct: 349 ERAQVVKDLLVKKYGISADRLKVAAGGGVDKFGQPILNRVVLVE 392
>gi|153809080|ref|ZP_01961748.1| hypothetical protein BACCAC_03388 [Bacteroides caccae ATCC 43185]
gi|149128413|gb|EDM19632.1| hypothetical protein BACCAC_03388 [Bacteroides caccae ATCC 43185]
Length = 395
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 121/404 (29%), Positives = 188/404 (46%), Gaps = 43/404 (10%)
Query: 1 MVLAFAGVSMAGFAQDEVPTK---------KYSVATNSFWSNWFVQAGIDWNAWYSGQEH 51
M+LAFAGV+ AQ + KY V TN FWSNWF G Y +H
Sbjct: 6 MLLAFAGVASVASAQQTMTVTEYEVIQVQDKYQVITNPFWSNWFFSVGGGAQVLYGNNDH 65
Query: 52 GADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPT-----SKVD 106
+ F+D R P +++GKW TPG GLR++ G+ K N+ + D
Sbjct: 66 -----IGKFRD-RVAPTFNVSVGKWVTPGFGLRMQYSGLQAKGFTTNETANYVVGGPRAD 119
Query: 107 NGNK----YWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYY-ATGLSAG 161
K Y G M NL +F GY+ NR+ +IIP++GAG S S + A +AG
Sbjct: 120 GSYKQRWDYMNLHGDLMINLNALFGGYNPNRVYEIIPYIGAGWAHSYSRPHTNAATFNAG 179
Query: 162 VQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGW 221
+ RLS L E EG DG +G R +D L LG+ + G+
Sbjct: 180 IINRFRLSNAVDLNLELSATGLEGKFDG---EHGGR--PDYDGILGATLGVTYYFPTRGF 234
Query: 222 EK-TPDLDAINAQHQAALDALNSRLRDAEAENARLREALANQKPVETISESVKELIS--- 277
++ TP + + + L+ + ++ A N +L++ LAN + + ++ + +I+
Sbjct: 235 QRPTPQIIS-----EIELNQMRDQMNAMAAANMQLQQQLANAQQPVEVEDTEEVVITDPN 289
Query: 278 -TPISVFFNIDKTNIASQKDLVNVRALAKYAVD-NNNNLLVTGYADSATGTPQRNQWLSE 335
P +VFF I ++ Q+++ N+ LA + + GYADSATGTP N+ LS
Sbjct: 290 IAPRTVFFKIGSDRLSPQEEM-NLSYLANRIKEFPGTTYTINGYADSATGTPAFNEKLSL 348
Query: 336 ERAKTLANELV-NMGVQSNKITQVGKGGVETLTPISFNRRATVQ 378
+RA+ + + LV G+ ++ + GGV+ NR V+
Sbjct: 349 KRAQVVKDLLVKKYGIPADNLKVAAGGGVDKFGQPILNRVVLVE 392
>gi|29349260|ref|NP_812763.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
VPI-5482]
gi|29341168|gb|AAO78957.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
VPI-5482]
Length = 394
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 113/398 (28%), Positives = 177/398 (44%), Gaps = 32/398 (8%)
Query: 1 MVLAFAGVSMAGFAQDEVPTKKY---------SVATNSFWSNWFVQAGIDWNAWYSGQEH 51
M+LAFAGV+ AQ V +Y V TN FWSNWF G + +H
Sbjct: 6 MLLAFAGVASVASAQQTVTVTEYEVIQVQDKHQVITNPFWSNWFFSVGGGAQVLFGNNDH 65
Query: 52 GADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKV----DN 107
+ F+D R P + +++GKW TPG GLR++ G+ K N++ V ++
Sbjct: 66 -----IGKFRD-RIAPTLNVSVGKWVTPGFGLRMQYSGLQSKGFTTNESANYVVGGPRED 119
Query: 108 GN-----KYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYY-ATGLSAG 161
G+ Y G + NL +F GY+ +R+ +IIP++GAG S S + A +AG
Sbjct: 120 GSYKQRWDYMNLHGDLLINLNALFGGYNPDRVYEIIPYIGAGWAHSYSKPHTNAATFNAG 179
Query: 162 VQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGW 221
+ RLS L E EG DG + G +D L LG+ + G+
Sbjct: 180 IINRFRLSNAVDLNLELSATGLEGKFDGE-----HGGKPDYDGILGATLGVTYYFPTRGF 234
Query: 222 EKTPDLDAINAQHQAALDALNSRLRDAEAENARLREALANQKPVETISESVKELISTPIS 281
++ + + D +N+ + A + + E V + P +
Sbjct: 235 QRPVPQIISELELRQMRDQMNA-MAAANMQLQQQLANAQQPVVEEAEEVVVTDANIAPRT 293
Query: 282 VFFNIDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTL 341
VFF I ++ Q+++ +K N + GYADSATGTP NQ LS ERA+ +
Sbjct: 294 VFFKIGSDKLSPQEEMNLSYLASKMKEFPNMTYTINGYADSATGTPSINQKLSLERAQAV 353
Query: 342 ANELV-NMGVQSNKITQVGKGGVETLTPISFNRRATVQ 378
+ LV G+ +++++ GGV+ NR V+
Sbjct: 354 KDLLVKKYGISADRLSVAAGGGVDKFGQPILNRVVLVE 391
>gi|29348270|ref|NP_811773.1| putative outer membrane protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|29340173|gb|AAO77967.1| putative outer membrane protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 396
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 106/357 (29%), Positives = 174/357 (48%), Gaps = 28/357 (7%)
Query: 22 KYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGL 81
KY V TN FWSNWFV AG ++ +H +K F D R +P + + GKWFTPG+
Sbjct: 40 KYKVETNRFWSNWFVTAGGGGLIFFG--DHNMQMK---FGD-RLSPALDIGFGKWFTPGI 93
Query: 82 GLRVKAQGIWGKRVGDNDA-PTSKVDNGNKYWIAQ--------GQAMFNLTNMFLGYSEN 132
G+R G+ K N + T KV + +++ Q G +FN +N+ GY+E
Sbjct: 94 GIRFMYSGLTIKGATQNGSHSTGKVYDASQWLDEQKFDFMNIHGDVLFNASNLLCGYNEK 153
Query: 133 RLLDIIPFVGAGVGRSMSHDYYATGLSAGVQASARLSKFTRLYAEAGWNRYEGDLDGYDQ 192
R + P+VG G + + + + AS L RL + N D+
Sbjct: 154 RFWSVTPYVGLGWILT-----WESPRARNFNASIGLINSFRLSSAFDLNLDVRGTATKDE 208
Query: 193 YYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAEAEN 252
+ G RG + L V +G+ + + W ++ + + L + +L+ EN
Sbjct: 209 FDGERGGRKEEGLLSVTVGVTYKFPRRTWGRSTVKTITFSDEELRL--MREQLKAMNDEN 266
Query: 253 ARLREALA-NQKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDNN 311
RL++ LA + K E + E+ ++S P V F I + ++++ VN+ AK +N
Sbjct: 267 NRLKDELATSNKVTERVVET--NILSAPYLVTFQISRYALSNEAR-VNIGFQAKIMKENK 323
Query: 312 NNLL-VTGYADSATGTPQRNQWLSEERAKTLANELVN-MGVQSNKITQVGKGGVETL 366
N + + GYAD TGT + NQ+LS+ RA+ + N LVN GV ++++ +GGV+ +
Sbjct: 324 NAVYTIIGYADKGTGTKEFNQFLSKARAEAVYNCLVNEFGVPASQLKITYEGGVDNM 380
>gi|156110981|gb|EDO12726.1| hypothetical protein BACOVA_01540 [Bacteroides ovatus ATCC 8483]
Length = 389
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 103/334 (30%), Positives = 164/334 (49%), Gaps = 30/334 (8%)
Query: 27 TNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVK 86
TNSFWSNW++ G N Y G+ N R P + +++GKW TP G+R++
Sbjct: 38 TNSFWSNWYIGVGGGINI-YEGEFDNKTSVGN-----RIAPALDVSLGKWITPSYGVRLQ 91
Query: 87 AQGIWGKRVGDNDAPTSKVDNGNKYWIA------QGQAMFNLTNMFLGYSENRLLDIIPF 140
G+ K + D +K + Y M+N +N FLG++E R+ ++IPF
Sbjct: 92 YSGLKAKGLTDASGMYAKGAHRGYYKEEFNVSNLHADFMWNWSNGFLGFNEKRVWNVIPF 151
Query: 141 VGAGVGRSMSHDYYATGLSA--GVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRG 198
VG G RS + + ++A G+ + RL K L E + D G G
Sbjct: 152 VGFGWARSWGNSTHDNEIAANIGILNTFRLGKRLDLTLEGRQMLVKECFD------GTVG 205
Query: 199 WDSHDNNLYVELGLQFNLGKTGWEKTPDLDAIN-AQHQAALDALNSRLRDAEAENARLR- 256
+ V LGL LGKT +++ + + + + ++AL ++ D E RL
Sbjct: 206 GSKGEGMSAVTLGLSVKLGKTRFDRVEKVAPADYSSYNERINALRAKNHDLSTEARRLAA 265
Query: 257 --EALANQKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAV--DNNN 312
EA N+KP E ++ES ++ ++P+++FFNI K + +K+L N+ A+ D N
Sbjct: 266 ELEAARNRKP-EVVNES--KVTASPVALFFNIGKATL-DKKELTNLEFYVNNAIKADKNK 321
Query: 313 NLLVTGYADSATGTPQRNQWLSEERAKTLANELV 346
+ G ADSATG+ + NQ LSE+R + + N LV
Sbjct: 322 TFTLIGSADSATGSKELNQRLSEQRMEYVYNLLV 355
>gi|29345476|ref|NP_808979.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337368|gb|AAO75173.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
VPI-5482]
Length = 400
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 110/379 (29%), Positives = 175/379 (46%), Gaps = 53/379 (13%)
Query: 17 EVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKW 76
E T KY V TN FW NWF+ G ++ + D F D R P + +AIGKW
Sbjct: 30 EYSTDKYKVETNRFWDNWFISVGAGGQVYFGDHDKQID-----FGD-RIAPALDIAIGKW 83
Query: 77 FTPGLGLRVKAQGI------------------------WGKRVGDNDAPTSKVDNGNKYW 112
FTPG+G+R G+ W GD D SK N +
Sbjct: 84 FTPGIGIRFMYSGLKSKGATRDDWECDITHGTGEHVPGWAGVPGD-DLQYSKYKMSNLH- 141
Query: 113 IAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYYATGLSAGVQASARLSKFT 172
+FN+ N+F GY+ENR D+ P+ G G R Y + S V A+ +
Sbjct: 142 ---ADVLFNVLNLFGGYNENRKWDLSPYAGLGWAR-----VYDSPSSKEVSANLGILTSW 193
Query: 173 RLYAEAGWNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAINA 232
N + D++ G G + NL +GL + + W+++ + N
Sbjct: 194 HFCDVLALNLDVRGMFVNDRFDGEGGGRFGEGNLSATIGLTYKFKQRSWDRSKTVYRYN- 252
Query: 233 QHQAALDALNSRLRDAEAENARLREALA--NQKPVETISESVKELISTPISVFFNIDKTN 290
L+++ +L D AEN RL++ALA +++ +TI VK++ S + V F I++T
Sbjct: 253 --YGDLESMRRKLNDMSAENDRLKKALADGDKQKAQTI---VKKIASANL-VTFKINRTK 306
Query: 291 IASQKDLVNVRALAKY--AVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVN- 347
++++ N+ LA+ + D +TGYAD+ TG+ + N+ LS+ERA+ + + LV
Sbjct: 307 LSNEAR-ANLGLLAEIIKSGDPETVYTITGYADAGTGSSKGNERLSKERAENVYDCLVKE 365
Query: 348 MGVQSNKITQVGKGGVETL 366
GV ++ KGGV+ +
Sbjct: 366 FGVSEKQLRIDYKGGVDNM 384
>gi|60680803|ref|YP_210947.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
gi|60492237|emb|CAH07002.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
Length = 378
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 111/385 (28%), Positives = 172/385 (44%), Gaps = 35/385 (9%)
Query: 8 VSMAGFAQD----EVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDF 63
+S + FAQD +P K + N FW+NWF+ A + ++ E+ D K F
Sbjct: 14 MSASVFAQDNDAKRLPGYKTTFEGNGFWNNWFMSANFGAQSLFA--ENSKDAKFRNTITF 71
Query: 64 RSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLT 123
L++GKWF P G+R+ QG G G S + +Y MF L
Sbjct: 72 MP----TLSVGKWFNPYWGVRL--QGTGGSLHGFTSGANSMLHY--QYGAVHADFMFGLI 123
Query: 124 NMFLGYSENRLLDIIPFVGAGVGRSMSHDYYATGLSAGVQASARLSKFTRLYAEAGWNRY 183
N F Y ENR DI+PF G G D T ++AG+QA R+SK + E Y
Sbjct: 124 NFFAPYKENRRFDIVPFAGIGGAFIRKGDQSFT-INAGIQARYRISKRFDINVE-----Y 177
Query: 184 EGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEK---TPDLDAINAQHQAALDA 240
+G + D RG +D + G+ F GKTG++K + +AI + +
Sbjct: 178 QGAILDDDMVV--RGGFPNDGISGLTAGVTFRFGKTGFKKGYSSRQYNAIKSNYSDLEAN 235
Query: 241 LNSRLRDAEAENARLREALANQKPV---ETI--SESVKELISTPISVFFNIDKTNIASQK 295
+ ++ A+ A + E A + + ETI + +K L ST I+ FN K ++ +
Sbjct: 236 YATLKKENAAQQAEIAELKARKPEIVKEETIIDNSEIKALPST-ITFPFNSSKIELSQEV 294
Query: 296 DLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVN-MGVQSNK 354
+ N+ K + + +TGYAD G+ Q N+ +SE RA + VN G+ ++
Sbjct: 295 SIFNIAEFLK--ANPEIRVRLTGYADK-RGSEQANRIVSERRANAVTEVFVNKYGIAKDR 351
Query: 355 ITQVGKGGVETLTPISFNRRATVQV 379
IT KG +NR V++
Sbjct: 352 ITTEFKGTSTKFENDDWNRAVVVEL 376
>gi|53712590|ref|YP_098582.1| putative outer membrane protein [Bacteroides fragilis YCH46]
gi|52215455|dbj|BAD48048.1| putative outer membrane protein [Bacteroides fragilis YCH46]
Length = 378
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 110/385 (28%), Positives = 172/385 (44%), Gaps = 35/385 (9%)
Query: 8 VSMAGFAQD----EVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDF 63
+S + FAQD +P K + N FW+NWF+ A + ++ E+ D K F
Sbjct: 14 MSASVFAQDNDAKRLPGYKTTFEGNGFWNNWFMSANFGAQSLFA--ENSKDAKFRNTITF 71
Query: 64 RSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLT 123
L++GKWF P G+R+ QG G G S + +Y MF L
Sbjct: 72 MP----TLSVGKWFNPYWGVRL--QGTGGSLHGFTSGANSMLHY--QYGAVHADFMFGLI 123
Query: 124 NMFLGYSENRLLDIIPFVGAGVGRSMSHDYYATGLSAGVQASARLSKFTRLYAEAGWNRY 183
N F Y ENR DI+PF G G D T ++AG+QA R+SK + E Y
Sbjct: 124 NFFAPYKENRRFDIVPFAGIGGAFIRKGDQSFT-INAGIQARYRISKRFDINVE-----Y 177
Query: 184 EGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEK---TPDLDAINAQHQAALDA 240
+G + D RG +D + G+ F GKTG++K + +AI + +
Sbjct: 178 QGAILDDDMVV--RGGFPNDGISGLTAGVTFRFGKTGFKKGYSSRQYNAIKSNYSDLEAN 235
Query: 241 LNSRLRDAEAENARLREALANQKPV---ETI--SESVKELISTPISVFFNIDKTNIASQK 295
+ ++ A+ A + E A + + ET+ + +K L ST I+ FN K ++ +
Sbjct: 236 YATLKKENAAQQAEIAELKARKPEIVKEETVIDNSEIKALPST-ITFPFNSSKIELSQEV 294
Query: 296 DLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVN-MGVQSNK 354
+ N+ K + + +TGYAD G+ Q N+ +SE RA + VN G+ ++
Sbjct: 295 SIFNIAEFLK--ANPEIRVRLTGYADK-RGSEQANRIVSERRANAVTEVFVNKYGIAKDR 351
Query: 355 ITQVGKGGVETLTPISFNRRATVQV 379
IT KG +NR V++
Sbjct: 352 ITTEFKGTSTKFENDDWNRAVVVEL 376
>gi|53712963|ref|YP_098955.1| outer membrane porin F precursor [Bacteroides fragilis YCH46]
gi|52215828|dbj|BAD48421.1| outer membrane porin F precursor [Bacteroides fragilis YCH46]
Length = 373
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 92/323 (28%), Positives = 151/323 (46%), Gaps = 26/323 (8%)
Query: 67 PGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDN--GNKYWIAQGQAMFNLTN 124
P + ++GK F P LG+R + G W + P + + KY+ + +FNL+N
Sbjct: 63 PLIHASVGKLFNPILGIRGQVAGCWSTLYSEYGMPEGEYNKMKNKKYFTLRADGLFNLSN 122
Query: 125 MFLGYSENRLLDIIPFVGAGV--GRSMSHDYYATGL---SAGVQASARLSKFTRLYAEAG 179
GY+ +RL + F G G+ ++ + L S G+ ++K+ + EA
Sbjct: 123 AIGGYNPDRLFTVSVFAGPGLTFAKAYGNQDKLNALINGSVGLMGQFNINKYLDINVEA- 181
Query: 180 WNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTP---DLDAINAQHQA 236
R E + Y R D + + G+ + G + D +AIN +
Sbjct: 182 --RGEVSPSVFGHYSSART----DGAVSLTAGVTYTFGGKRFVSCGAQVDQNAINEE--- 232
Query: 237 ALDALNSRLRDAEAENARLREALANQKPVETISESVKEL-ISTPISVFFNIDKTNIASQK 295
L+ S L A+++ A + ALAN KPV E VKE+ ++ P +VFF I K+ I
Sbjct: 233 -LNRYRSELSKAQSDLADAKNALANVKPV--TKEVVKEIEVAGPRAVFFQIGKSKI-DDY 288
Query: 296 DLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVNMGVQSNK 354
+VN++ AK N + + GYAD ATG+ + NQ LSE RA+ + + L+ GV ++
Sbjct: 289 GMVNIQLAAKILKANPDKKYKIAGYADKATGSAKWNQKLSEARAQAVYDALIKEGVSKDQ 348
Query: 355 ITQVGKGGVETLTPISFNRRATV 377
+ VG GG + +F R +
Sbjct: 349 LELVGFGGTANMFGKNFLNRVVI 371
>gi|53712971|ref|YP_098963.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
gi|60681183|ref|YP_211327.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
gi|52215836|dbj|BAD48429.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
gi|60492617|emb|CAH07389.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
Length = 372
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 103/369 (27%), Positives = 166/369 (44%), Gaps = 44/369 (11%)
Query: 27 TNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRS------NPGVALAIGKWFTPG 80
+ SF N FV G+ GA VNP +F P + +++GK F P
Sbjct: 28 SESFKDNIFVSVGV-----------GAQGCVNP-DNFDYGFGKAITPLINVSVGKLFNPV 75
Query: 81 LGLRVKAQGIWGKRVGDNDAPT-SKVDNGNK-YWIAQGQAMFNLTNMFLGYSENRLLDII 138
G+R + G W + P + + + NK Y+ + MFNL+N GY+ +RL +
Sbjct: 76 WGIRGQVAGAWTTLYSNYGQPADTYIKSKNKHYFTMRADGMFNLSNAIGGYNPDRLFTVS 135
Query: 139 PFVGAGVGRSMSHDYYATGLSAGVQASARLSKFTRLYAEAGWNRY-----EGDLDGYDQY 193
F G G+ +A + +A ++ L + N+Y E +
Sbjct: 136 VFAGPGLT-------FAKAYGDQDKVNALINGSVGLAGQFNINKYLDINIEARGEVSPSP 188
Query: 194 YGNRGWDSHDNNLYVELGLQFNLGKTGW---EKTPDLDAINAQHQAALDALNSRLRDAEA 250
+GN D + + G+ + G + D +AIN + L+ S L A++
Sbjct: 189 FGNISSAHTDGAVSLTAGVTYTFGGKRFVSCGSQVDQNAINEE----LNRYRSELAKAQS 244
Query: 251 ENARLREALANQKPVETISESVKEL-ISTPISVFFNIDKTNIASQKDLVNVRALAKYAVD 309
+ A + ALAN KPV E VKE+ ++ P ++FF I K+ I +VN++ AK
Sbjct: 245 DLADAKNALANVKPV--TKEVVKEIEVAGPRAIFFQIGKSKI-DDYGMVNIQLAAKILKA 301
Query: 310 N-NNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVNMGVQSNKITQVGKGGVETLTP 368
N + V GYAD ATG+ + NQ LSE RA+ + + L+ GV +++ VG GG +
Sbjct: 302 NPDKKYKVAGYADKATGSAKWNQKLSEARAQAVYDALIKEGVSKDQLELVGFGGTANMFG 361
Query: 369 ISFNRRATV 377
+F R +
Sbjct: 362 KNFLNRVVI 370
>gi|60681175|ref|YP_211319.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
gi|60492609|emb|CAH07381.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
Length = 366
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 90/323 (27%), Positives = 150/323 (46%), Gaps = 26/323 (8%)
Query: 67 PGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDN--GNKYWIAQGQAMFNLTN 124
P + ++GK F P G+R + G W + P + + KY+ + +FNL+N
Sbjct: 56 PLIHASVGKLFDPIWGIRGQVAGCWSTLYSEYGMPEGEYNKMKNKKYFTLRADGLFNLSN 115
Query: 125 MFLGYSENRLLDIIPFVGAGV--GRSMSHDYYATGL---SAGVQASARLSKFTRLYAEAG 179
GY+ +RL + F G G+ ++ + L S G+ ++K+ + EA
Sbjct: 116 AIGGYNPDRLFTVSVFAGPGLTFAKAYGNQDKLNALINGSVGLMGQFNINKYLDINVEA- 174
Query: 180 WNRYEGDLDGYDQYYGNRGWDSHDNNLYVELGLQFNLGKTGWEKTP---DLDAINAQHQA 236
R E + Y R D + + G+ + G + D +AIN +
Sbjct: 175 --RGEVSPSLFGHYSSART----DGAVSLTAGVTYTFGGKRFVSCGAQVDQNAINEE--- 225
Query: 237 ALDALNSRLRDAEAENARLREALANQKPVETISESVKEL-ISTPISVFFNIDKTNIASQK 295
L+ S L A+++ A + ALAN KPV E VKE+ ++ P +VFF I K+ I
Sbjct: 226 -LNRYRSELSKAQSDLADAKNALANVKPV--TKEVVKEIEVAGPRAVFFQIGKSKI-DDY 281
Query: 296 DLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVNMGVQSNK 354
+VN++ AK N + + GYAD ATG+ + NQ LSE RA+ + + L+ GV ++
Sbjct: 282 GMVNIQLAAKILKANPDKKYKIAGYADKATGSAKWNQKLSEARAQAVYDALIKEGVSKDQ 341
Query: 355 ITQVGKGGVETLTPISFNRRATV 377
+ +G GG + +F R +
Sbjct: 342 LELIGFGGTANMFGKNFLNRVVI 364
>gi|57918612|gb|AAW59418.1| outer membrane protein HMP [Porphyromonas asaccharolytica]
Length = 387
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 109/382 (28%), Positives = 171/382 (44%), Gaps = 51/382 (13%)
Query: 19 PTKKYSVATNSFWSNWFV--QAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKW 76
P K + + +WF+ Q G+ S +E PF D R +L++GK+
Sbjct: 33 PVYKTTFERGTAADHWFLTLQGGVGAQFVGSNEE-------KPFGD-RLQMSYSLSLGKY 84
Query: 77 FTPGLGLR---VKAQGIWGKRVGDNDAPTSKVDNGNKYWI-AQGQAMFNLTNMFLGYSEN 132
TP R V AQ +VG+ +V N ++ A MF++ N F Y+
Sbjct: 85 HTPSFATRLNLVGAQAHTYYKVGN------EVRNYETSFVGAHYDFMFDIVNHFSRYNAK 138
Query: 133 RLLDIIPFVGAGVGRSMSHD------YYATGLSAGVQASARLSKFTRLYAEA----GWNR 182
R+ IIPF AGVG +M + ++ L AG+Q RL + L EA
Sbjct: 139 RVFHIIPF--AGVGYNMKFNKAFEDLHHTAALDAGLQLQFRLGRRADLVVEAKAIYNNFN 196
Query: 183 YEGDLDGYDQYYGNRGWDSHDNNLYVEL--GLQFNLGKTGWEKTPDLDAINAQHQAALDA 240
+ D ++ + + N LY L GL F +G W + +D A ++
Sbjct: 197 FNYTNDPKEKVWNPNAY----NGLYGALTGGLNFRMGGVEWTEVVPMD------YALIND 246
Query: 241 LNSRLRDAEAENARL--REALANQKPVETISESVKELISTPISVFFNIDKTNIASQKDLV 298
LNS++ AENA L R + P T + KE++S ++ F D + I + ++
Sbjct: 247 LNSQISSLRAENAELSKRPVSCPECPELTAQTTTKEVMSDK-TILFKFDSSRI-DKNQMI 304
Query: 299 NVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVN-MGVQSNKITQ 357
+ +++Y NN +LV GY D+ TG N LSE RAK +AN L+N GV ++ IT
Sbjct: 305 TLYNVSEYVKANNTPILVIGYTDT-TGDANYNLGLSERRAKAVANALINDFGVSADMITT 363
Query: 358 VGKGGVETLTPI-SFNRRATVQ 378
+G + L S+NR ++
Sbjct: 364 QWEGATDKLFDTKSWNRVVIIR 385
>gi|150007308|ref|YP_001302051.1| outer membrane protein OmpA [Parabacteroides distasonis ATCC 8503]
gi|42718022|gb|AAS38436.1| outer membrane protein A [Bacteroides distasonis]
gi|149935732|gb|ABR42429.1| outer membrane protein OmpA [Parabacteroides distasonis ATCC 8503]
Length = 381
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 105/355 (29%), Positives = 164/355 (46%), Gaps = 39/355 (10%)
Query: 22 KYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGL 81
K + N NWF+ + Q AD K R N ++ GKWF P L
Sbjct: 36 KTNFKKNKARDNWFISIAGGASVLLGDQNGEADFKN------RLNFAPQVSFGKWFNPYL 89
Query: 82 GLRVKAQG-IWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMFLGYSENRLLDIIPF 140
G R + G I GD ++ NKY A ++++TN + Y E+++ +IP+
Sbjct: 90 GFRTQLNGGIIHGFEGDG----AQFMQHNKYVAAHVDLLWDVTNFWAPYRESKVFRLIPW 145
Query: 141 VGAGVGR----SMSHDYYAT---GLSAGVQASARLSKFTRLYAEAGWNRYEGDLDGYDQY 193
VG G + + S+D T L+AG+ + RLSK L E +G L +Q+
Sbjct: 146 VGFGYAQRFKTTESYDRPRTESPTLNAGILTAFRLSKRVDLNVEI-----QGSLLN-EQF 199
Query: 194 YGNRGWDSHDNNLYVEL--GLQFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAEAE 251
NR +H + V+L GL F LGKT D + + A L+ LN ++ A
Sbjct: 200 --NRVEMNHLTDGIVQLSAGLTFKLGKT------DFEVLEPMDYALLNDLNGQINSLRAA 251
Query: 252 NARL-REALANQKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDN 310
N L + ++ + ET++E V + + N K + Q +N+ A++ +N
Sbjct: 252 NDELSKRPVSCPECQETVTEVVNNYVDNVVYFRINSAKIDKNQQ---INIYNTAEFMKNN 308
Query: 311 NNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVN-MGVQSNKITQVGKGGVE 364
N + V GYAD TGT N LSE+RA+ +A EL++ G+ S++IT +G E
Sbjct: 309 NAPIKVVGYADKKTGTSDYNMGLSEKRARAVAKELIDKYGISSSQITIEWRGSDE 363
>gi|53828383|dbj|BAD54750.1| hypothetical protein [Porphyromonas gingivalis]
Length = 380
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 97/351 (27%), Positives = 147/351 (41%), Gaps = 47/351 (13%)
Query: 33 NWFVQ----AGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQ 88
+WF+ AG+ + W + + L + P +IGKW P G R++
Sbjct: 44 HWFIDIAGGAGMALSGWNNDVDFVDRLSIVP----------TFSIGKWHEPYFGTRLQFT 93
Query: 89 G--IWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVG 146
G I+G G SK N N + A MF+LTN F Y NR+ IIP+ G G G
Sbjct: 94 GFDIYGFPQG------SKERNHNYFGNAHLDFMFDLTNYFGVYRPNRVFHIIPWAGIGFG 147
Query: 147 RSM-----------SHDYYATGLSAGVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYG 195
S D ++ G+ RLS+ E + G ++ + G
Sbjct: 148 DKFHSENANGEKVGSKDDITGTVNVGLMMKFRLSRVVDFNIEG--QAFAGKMN----FIG 201
Query: 196 NRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAEAENARL 255
+ + D + GL FNLGKT W + +D A ++ LN+++ + L
Sbjct: 202 TKRGKA-DFPVMATAGLTFNLGKTEWTEIVPMD------YALVNDLNNQINSLRGQVEEL 254
Query: 256 REALANQKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDNNNNLL 315
+ ++ + V+F I+ I ++ +NV A+YA NN +
Sbjct: 255 SRRPVSCPECPEPTQPTVTRVVVDNVVYFRINSAKIDRNQE-INVYNTAEYAKTNNAPIK 313
Query: 316 VTGYADSATGTPQRNQWLSEERAKTLANELVNMGVQSNKITQVGKGGVETL 366
V GYAD TGT N LSE RAK +A L GV +++IT KG E +
Sbjct: 314 VVGYADEKTGTAAYNMKLSERRAKAVAKMLEKYGVSADRITIEWKGSSEQI 364
>gi|34540489|ref|NP_904968.1| immunoreactive 42 kDa antigen PG33 [Porphyromonas gingivalis W83]
gi|27805653|sp|Q9S3R8|OMP40_PORGI Outer membrane protein 40 precursor (Omp40) (PG33)
gi|5759279|gb|AAD51068.1|AF175715_1 immunoreactive 42kD antigen PG33 [Porphyromonas gingivalis]
gi|34396802|gb|AAQ65867.1| immunoreactive 42 kDa antigen PG33 [Porphyromonas gingivalis W83]
Length = 380
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 97/351 (27%), Positives = 146/351 (41%), Gaps = 47/351 (13%)
Query: 33 NWFVQ----AGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQ 88
+WF+ AG+ + W + + L + P IGKW P G R++
Sbjct: 44 HWFIDIAGGAGMALSGWNNDVDFVDRLSIVP----------TFGIGKWHEPYFGTRLQFT 93
Query: 89 G--IWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVG 146
G I+G G SK N N + A MF+LTN F Y NR+ IIP+ G G G
Sbjct: 94 GFDIYGFPQG------SKERNHNYFGNAHLDFMFDLTNYFGVYRPNRVFHIIPWAGIGFG 147
Query: 147 RSM-----------SHDYYATGLSAGVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYG 195
S D ++ G+ RLS+ E + G ++ + G
Sbjct: 148 YKFHSENANGEKVGSKDDMTGTVNVGLMLKFRLSRVVDFNIEG--QAFAGKMN----FIG 201
Query: 196 NRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAEAENARL 255
+ + D + GL FNLGKT W + +D A ++ LN+++ + L
Sbjct: 202 TKRGKA-DFPVMATAGLTFNLGKTEWTEIVPMD------YALVNDLNNQINSLRGQVEEL 254
Query: 256 REALANQKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDNNNNLL 315
+ ++ + V+F I+ I ++ +NV A+YA NN +
Sbjct: 255 SRRPVSCPECPEPTQPTVTRVVVDNVVYFRINSAKIDRNQE-INVYNTAEYAKTNNAPIK 313
Query: 316 VTGYADSATGTPQRNQWLSEERAKTLANELVNMGVQSNKITQVGKGGVETL 366
V GYAD TGT N LSE RAK +A L GV +++IT KG E +
Sbjct: 314 VVGYADEKTGTAAYNMKLSERRAKAVAKMLEKYGVSADRITIEWKGSSEQI 364
>gi|154490277|ref|ZP_02030538.1| hypothetical protein PARMER_00509 [Parabacteroides merdae ATCC
43184]
gi|154089169|gb|EDN88213.1| hypothetical protein PARMER_00509 [Parabacteroides merdae ATCC
43184]
Length = 386
Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 32/349 (9%)
Query: 22 KYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGVALAIGKWFTPGL 81
K + N NWF+ + + Q AD K R N ++GKWF P L
Sbjct: 40 KTNFKKNKAGDNWFISIAGGASVLFGDQNSEADFKN------RLNFAPQFSVGKWFNPYL 93
Query: 82 GLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMFLGYSENRLLDIIPFV 141
LR++ G G G + + + + NKY A ++++TN + Y+E ++ +IP+V
Sbjct: 94 ALRLQLNG--GVLHGFENTGATFMQH-NKYAAAHADLLWDVTNFWAPYNEKKVFRLIPWV 150
Query: 142 GAGVGRSMSHDYYATGLSA--------GVQASARLSKFTRLYAEAGWNRYEGDLDGYDQY 193
G G + + G++ G+ + RLSK L E + + Y
Sbjct: 151 GLGYAQRFKNSDDNRGIARTESPTVNFGILTAFRLSKRVDLNVEVQGSLLNEQFNRVSMY 210
Query: 194 YGNRGWDSHDNNLYVELGLQFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAEAENA 253
+ G + GL F LGKT D + + A L+ LN ++ AEN
Sbjct: 211 HLTDGIGQ------LSAGLTFKLGKT------DFEVLEPMDYALLNDLNGQINALRAEND 258
Query: 254 RLREALANQKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDNNNN 313
L + + E + +V V+F I+ I + V++ A++ +NN
Sbjct: 259 ELSKRPVSCPECEEVVTNVVNNYVD-NVVYFRINSAKIDKNQQ-VSIFNTAQFMKENNVP 316
Query: 314 LLVTGYADSATGTPQRNQWLSEERAKTLANELVN-MGVQSNKITQVGKG 361
+ V GYAD TGT N LSE+RA+ +A EL++ G+ S++IT KG
Sbjct: 317 IKVIGYADKKTGTGSYNMQLSEKRARAVAKELIDKYGISSSQITIEWKG 365
>gi|150006545|ref|YP_001301289.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
gi|149934969|gb|ABR41667.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
Length = 364
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 53/337 (15%)
Query: 64 RSNPGVALAIGKWFTPGLGLRVKAQGIWG----KRVGDNDAPTSKVDNGNKYWIAQGQAM 119
R +P ++++GK+ TP G+R + GIW + +G ++ + Y A AM
Sbjct: 54 RISPNFSISLGKYITPTWGIRGQVNGIWQSLCLQEIGYHE-------HNKNYVGANIDAM 106
Query: 120 FNLTNMFLGYSENRLLDIIPFVGA--GVGRSMSHDYY---ATGLSAGVQASARLSKFTRL 174
NL+++F G + NR ++ FVG V +S + Y TG GV S R+
Sbjct: 107 VNLSSLFAGANPNRFFEVYGFVGPQLSVAKSANVVYTYDGNTGERTGVSTSGEAKAKARI 166
Query: 175 YAEAGW-------NRYEGDLDGYD----QYYGN-RGWDSHDNNLYVELGLQFNLGKTGWE 222
A AG N++ D++ +GN + + G+ + G +
Sbjct: 167 GASAGLGLKFNLNNKWAIDVEARGAIAPSIFGNISDHRKAEGTGMITAGVSYTFGGKKFA 226
Query: 223 KTPDLDAINAQHQAALDALNSRLRDAEAENARLREALANQKPVETISESVKELISTP-IS 281
K D R+ + E +RE P E + E +KE+ S ++
Sbjct: 227 KVED-----------------RVVEKEVIKEVVREV-----PKEVVKEVIKEVPSAAEVA 264
Query: 282 VFFNIDKTNIASQKDLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKT 340
+FF I K I+S+ +VNV+ +AK N N + G+AD ATG+ NQ LSE+RA+
Sbjct: 265 IFFKIGKAKISSE-GMVNVQLMAKAIKANPNAKYKIAGFADKATGSASFNQTLSEKRAQA 323
Query: 341 LANELVNMGVQSNKITQVGKGGVETLTPISFNRRATV 377
+ + LV GV+ +++ +V GG + + ++ R +
Sbjct: 324 VYDALVAEGVKESQLEKVAMGGTDNMFGKNYLNRVVI 360
>gi|156860614|gb|EDO54045.1| hypothetical protein BACUNI_02048 [Bacteroides uniformis ATCC 8492]
Length = 379
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 91/335 (27%), Positives = 151/335 (45%), Gaps = 39/335 (11%)
Query: 67 PGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMF 126
P ++++GK TP G+R + GI D+ + ++ Y AM NL+ +F
Sbjct: 58 PHFSVSVGKLITPTWGVRAQVNGITQHLCLDD----AYWEHNKTYVGGNIDAMINLSTLF 113
Query: 127 LGYSENRLLDIIPFVGAGVGRSMSHDYYAT----GLSAGVQASARLSKFTRLYAEAGW-- 180
G + NR ++ F+G + + S + T G S + + R+ A AG
Sbjct: 114 AGANPNRFFEVYGFLGPQISVAKSQNVDVTISADGTSQSMAPAGEAEMRARIGASAGLGL 173
Query: 181 -----NRYEGDLDGYD----QYYGNRGWDSH---DNNLYVELGLQFNLGKTGWEKTP--- 225
++ D++ +GN SH + + G+ + G G + P
Sbjct: 174 KFNINTKWAIDVEARGAIAPSIFGN--ISSHRKAEGTGMLTAGVSYIFG--GKKFIPVSK 229
Query: 226 -DLDAINAQHQAALDALNSRLRDAEAENARLREALANQKPVETISESVKEL-ISTPISVF 283
D DA+NA+ ++ S L A+A+ A + ALAN KP + E KE+ ++ P ++F
Sbjct: 230 IDEDAVNAE----INRYRSELAQAQADLANCKNALANAKP--EVKEVTKEVEVAGPRAIF 283
Query: 284 FNIDKTNIASQKDLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKTLA 342
F I + VN+ AK N + V GYAD ATG+ NQ LSE+RA+ +
Sbjct: 284 FKIGSARLDDYGK-VNIELAAKILKANPDKKYKVAGYADKATGSASWNQKLSEKRAQVVY 342
Query: 343 NELVNMGVQSNKITQVGKGGVETLTPISFNRRATV 377
+ L+ GV +++ VG GG E + +F R +
Sbjct: 343 DALIAQGVDKDQLELVGFGGTENMFGKNFLNRVVI 377
>gi|156107095|gb|EDO08840.1| hypothetical protein BACOVA_04696 [Bacteroides ovatus ATCC 8483]
Length = 466
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 88/390 (22%), Positives = 152/390 (38%), Gaps = 85/390 (21%)
Query: 64 RSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLT 123
R P + A+GKWFTP +G R+ G+ K D S +Y ++N+
Sbjct: 86 RLKPSYSFAVGKWFTPSVGARINYSGVQFK-----DGTLSN----QEYHHIHADLLWNVL 136
Query: 124 NMFLGYSENRLLDIIPFVGAGVGRSMSHDYYATGLSAGVQASARLSK------------- 170
E ++ PF G G+ + S+ +S GVQ R+SK
Sbjct: 137 GRRYARQEQVRWNLAPFAGVGLLHNASNGNNPFAVSYGVQGEYRISKRVSAMLELSGTTT 196
Query: 171 -----------------------FTRLYAEAGWNR----------------YEGDLDGYD 191
FT + GW R Y L G +
Sbjct: 197 FQDFDGYGRPNRLGDHMVSLTAGFTFHLGKVGWKRAVDATPYIRQNEWLVDYANVLSGEN 256
Query: 192 QYYGNRGWDSHDNNLYVEL----GLQFNLGKTGW----EKTPDLDAINAQHQAALDALNS 243
+ Y + W + EL ++ L K G ++T + + L++L +
Sbjct: 257 KRY--KDWYDRNRRTLAELLKILEIEGLLDKYGHLVNDDETDRRQGYPRNNYSGLNSLRA 314
Query: 244 RLRDAEAENARLREALA---------NQKPVETISESVKEL-----ISTPISVFFNIDKT 289
RL++ + ++ + +++P +SE + + I +P+ FFN++
Sbjct: 315 RLKNRHWDGISPLDSASIIYGNNGDDSEQPGIIVSEKTELIQAGNCIGSPVYFFFNLNTA 374
Query: 290 NIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANELVNMG 349
++ ++N+ LA+ A ++ VTG ADS+TGTP N LS RA + EL G
Sbjct: 375 HLTDASQMLNLDELARVAKKYGLSVKVTGAADSSTGTPVLNGSLSTLRADHIVAELEKRG 434
Query: 350 VQSNKITQVGKGGVETLTPISFNRRATVQV 379
+ +I +V +GG+ P+ NR V++
Sbjct: 435 IPIERIVKVSRGGIADHVPVEANRHTKVEL 464
>gi|53828382|dbj|BAD54749.1| hypothetical protein [Porphyromonas gingivalis]
Length = 391
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 107/389 (27%), Positives = 159/389 (40%), Gaps = 50/389 (12%)
Query: 14 AQDEVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGV--AL 71
A ++P K + A N SNWFV G L N KD G +L
Sbjct: 27 ATGQLPAKNVAFARNKAGSNWFVT--------LQGGVAAQFLNDNNNKDLMDRLGAIGSL 78
Query: 72 AIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNK-----YWIAQGQAMFNLTNMF 126
++GK+ +P R++ G A T NG + + A MF++ N F
Sbjct: 79 SVGKYHSPFFATRLQING--------GQAHTFLGKNGEQEINTNFGAAHFDFMFDVVNYF 130
Query: 127 LGYSENRLLDIIPFVGAG-----VGRSMSHDYYAT-GLSAGVQASARLSKFTRLYAEAGW 180
Y ENR +IP+VG G +G S D + + GV + RL K EA
Sbjct: 131 APYRENRFFHLIPWVGVGYQHKFIGSEWSKDNVESLTANVGVMMAFRLGKRVDFVIEAQA 190
Query: 181 NRYEGDLDGYDQYYGNRGWDSHDNNLYVEL------GLQFNLGKTGWEKTPDLDAINAQH 234
+L ++ Y L GL F LG G+ +AI
Sbjct: 191 AHSNLNLSRAYNAKKTPVFEDPAGRYYNGLQGMATAGLNFRLGAVGF------NAIEPMD 244
Query: 235 QAALDALN---SRLRDAEAENARLREALANQKPVETISESVKELISTPISVFFNIDKTNI 291
A ++ LN +RLR +E E R + P E + E I T +V F D +++
Sbjct: 245 YALINDLNGQINRLR-SEVEELSKRPVSCPECP-EVTPVTKTENILTEKAVLFRFD-SHV 301
Query: 292 ASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANELV-NMGV 350
+ L+N+ +A++ + N + V GYAD TG Q N+ LSE RAK + + L GV
Sbjct: 302 VDKDQLINLYDVAQFVKETNEPITVVGYAD-PTGNTQYNEKLSERRAKAVVDVLTGKYGV 360
Query: 351 QSNKITQVGKG-GVETLTPISFNRRATVQ 378
S I+ KG + + ++NR V+
Sbjct: 361 PSELISVEWKGDSTQPFSKKAWNRVVIVR 389
>gi|34540490|ref|NP_904969.1| immunoreactive 43 kDa antigen PG32 [Porphyromonas gingivalis W83]
gi|37538316|sp|Q9S3R9|OMP41_PORGI Outer membrane protein 41 precursor (Omp41) (PG32)
gi|34396803|gb|AAQ65868.1| immunoreactive 43 kDa antigen PG32 [Porphyromonas gingivalis W83]
Length = 391
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 110/397 (27%), Positives = 163/397 (41%), Gaps = 66/397 (16%)
Query: 14 AQDEVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGV--AL 71
A ++P K + A N SNWFV G L N KD G +L
Sbjct: 27 ATGQLPAKNVAFARNKAGSNWFVT--------LQGGVAAQFLNDNNNKDLMDRLGAIGSL 78
Query: 72 AIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNK-----YWIAQGQAMFNLTNMF 126
++GK+ +P R++ G A T NG + + A MF++ N F
Sbjct: 79 SVGKYHSPFFATRLQING--------GQAHTFLGKNGEQEINTNFGAAHFDFMFDVVNYF 130
Query: 127 LGYSENRLLDIIPFVGAG-----VGRSMSHDYYAT-GLSAGVQASARLSKFTRLYAEAGW 180
Y ENR +IP+VG G +G S D + + GV + RL K EA
Sbjct: 131 APYRENRFFHLIPWVGVGYQHKFIGSEWSKDNVESLTANVGVMMAFRLGKRVDFVIEAQA 190
Query: 181 NRYEGDL-------------DGYDQYY-GNRGWDSHDNNLYVELGLQFNLGKTGWEKTPD 226
+L D +YY G +G + GL F LG G+
Sbjct: 191 AHSNLNLSRAYNAKKTPVFEDPAGRYYNGFQGMAT--------AGLNFRLGAVGF----- 237
Query: 227 LDAINAQHQAALDALN---SRLRDAEAENARLREALANQKPVETISESVKELISTPISVF 283
+AI A ++ LN +RLR +E E R + P E + E I T +V
Sbjct: 238 -NAIEPMDYALINDLNGQINRLR-SEVEELSKRPVSCPECP-EVTPVTKTENILTEKAVL 294
Query: 284 FNIDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLAN 343
F D +++ + L+N+ +A++ + N + V GYAD TG Q N+ LSE RAK + +
Sbjct: 295 FRFD-SHVVDKDQLINLYDVAQFVKETNEPITVVGYAD-PTGNTQYNEKLSERRAKAVVD 352
Query: 344 ELV-NMGVQSNKITQVGKG-GVETLTPISFNRRATVQ 378
L GV S I+ KG + + ++NR V+
Sbjct: 353 VLTGKYGVPSELISVEWKGDSTQPFSKKAWNRVVIVR 389
>gi|5759277|gb|AAD51067.1|AF175714_1 immunoreactive 43kD antigen PG32 [Porphyromonas gingivalis]
Length = 391
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 109/397 (27%), Positives = 162/397 (40%), Gaps = 66/397 (16%)
Query: 14 AQDEVPTKKYSVATNSFWSNWFVQAGIDWNAWYSGQEHGADLKVNPFKDFRSNPGV--AL 71
A ++P K + A N NWFV G L N KD G +L
Sbjct: 27 ATGQLPAKNVAFARNKAGRNWFVT--------LQGGVAAQFLNDNNNKDLMDRLGAIGSL 78
Query: 72 AIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNK-----YWIAQGQAMFNLTNMF 126
++GK+ +P R++ G A T NG + + A MF++ N F
Sbjct: 79 SVGKYHSPFFATRLQING--------GQAHTFLGKNGEQEINTNFGAAHFDFMFDVVNYF 130
Query: 127 LGYSENRLLDIIPFVGAG-----VGRSMSHDYYAT-GLSAGVQASARLSKFTRLYAEAGW 180
Y ENR +IP+VG G +G S D + + GV + RL K EA
Sbjct: 131 APYRENRFFHLIPWVGVGYQHKFIGSEWSKDNVESLTANVGVMMAFRLGKRVDFVIEAQA 190
Query: 181 NRYEGDL-------------DGYDQYY-GNRGWDSHDNNLYVELGLQFNLGKTGWEKTPD 226
+L D +YY G +G + GL F LG G+
Sbjct: 191 AHSNLNLSRAYNAKKTPVFEDPAGRYYNGFQGMAT--------AGLNFRLGAVGF----- 237
Query: 227 LDAINAQHQAALDALN---SRLRDAEAENARLREALANQKPVETISESVKELISTPISVF 283
+AI A ++ LN +RLR +E E R + P E + E I T +V
Sbjct: 238 -NAIEPMDYALINDLNGQINRLR-SEVEELSKRPVSCPECP-EVTPVTKTENILTEKAVL 294
Query: 284 FNIDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLAN 343
F D +++ + L+N+ +A++ + N + V GYAD TG Q N+ LSE RAK + +
Sbjct: 295 FRFD-SHVVDKDQLINLYDVAQFVKETNEPVTVVGYAD-PTGNTQYNEKLSERRAKAVVD 352
Query: 344 ELV-NMGVQSNKITQVGKG-GVETLTPISFNRRATVQ 378
L GV S I+ KG + + ++NR V+
Sbjct: 353 VLTGKYGVPSELISVEWKGDSTQPFSKKAWNRVVIVR 389
>gi|53714190|ref|YP_100182.1| putative outer membrane protein [Bacteroides fragilis YCH46]
gi|52217055|dbj|BAD49648.1| putative outer membrane protein [Bacteroides fragilis YCH46]
Length = 480
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 107/394 (27%), Positives = 159/394 (40%), Gaps = 83/394 (21%)
Query: 64 RSNPGVALAIGKWFTPGLGLR--------------------VKAQGIW---GKRVGDND- 99
R P +LA+GKWFTP +G R + A +W G+R +
Sbjct: 86 RVKPSYSLAVGKWFTPLVGARVNYSGLQFKDAQLSTQDYHYIHADLLWNLLGRRYARQEQ 145
Query: 100 -----APTSKV------DNGN-----------KYWIAQG-QAMFNLTNM-----FLGYS- 130
AP V NGN +Y I++ AM L+N F GY
Sbjct: 146 VRWRLAPFMGVGLLHNATNGNNPFALSYGILTQYRISKRVSAMLELSNTTTFQDFDGYGY 205
Query: 131 ENRLLDIIPFVGAG-------VG--RSMSHDYYATGLSAGVQASARLSKFTRLYAEAGWN 181
NRL D + + AG VG R++ Y V LS+ R Y E
Sbjct: 206 PNRLGDHMLSLTAGFTFHLGKVGWKRAVDTAPYIHRNEQLVDYGNFLSEENRRYVERHNQ 265
Query: 182 ------------RYEGDLDGYDQYYGN---RGWDSHDNNLYVELGLQFNLGKTGWEKTPD 226
EG LD Y + N G NN L+ L + W+ +
Sbjct: 266 DKRTLVELKKILEIEGLLDTYSHIFDNDDITGCRYPINNYSGLNSLRARLKHSYWDGSSP 325
Query: 227 LDAINAQHQAALDALN-SRLRDAEAENARLREALANQKPVETISESVKELISTPISVFFN 285
LD Q + + N + R+ ++ + ++ LA V +S + E I TPI FF
Sbjct: 326 LDTTILQTENGKPSYNYTASRNVQSAH---QDTLAMDSTV--LSYADGECIGTPIYFFFA 380
Query: 286 IDKTNIASQKDLVNVRALAKYAVDNNNNLLVTGYADSATGTPQRNQWLSEERAKTLANEL 345
++ T++ +N+ LA+ A + ++ VTG ADS+TGT N LS RA + EL
Sbjct: 381 LNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDSLSISRASFITAEL 440
Query: 346 VNMGVQSNKITQVGKGGVETLTPISFNRRATVQV 379
G+ + +I +V KGG+ TP+ NR V++
Sbjct: 441 EQRGIPAKRIIRVSKGGIADYTPVEANRHTKVEL 474
>gi|29347201|ref|NP_810704.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29339100|gb|AAO76898.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 396
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 95/359 (26%), Positives = 144/359 (40%), Gaps = 56/359 (15%)
Query: 45 WYSGQEHGA--DLKVNPFKDFRSNPGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPT 102
W+ + GA L F D S P VA+A+G FTP GLR A G K G PT
Sbjct: 66 WFLSVQGGAAYTLGEADFGDLLS-PSVAVALGYKFTPLFGLRAAASGWQAK--GSWVNPT 122
Query: 103 SKVDNGNKYWIAQGQAMFNLTNMFLGYSENRLLDIIPFVGAGVGRSMSHDYYATGLSA-- 160
+ KY AM +L+N+ G+ R + F+G G+ + +D A L A
Sbjct: 123 TTYSY--KYLQGSIDAMLDLSNLCCGFHPKRFFNAYLFLGVGLNGAFDNDE-AVDLDANG 179
Query: 161 ------------------GVQASARLSKFTRLYAEAGWNRYEGDLDGYDQYYGNRGWDSH 202
G+ A RL+ + E N D++ +G ++
Sbjct: 180 YKLHHLWTGKKLFVAGRGGLGADFRLNNHIAINLEVNANMLS------DKFNSKQGRNA- 232
Query: 203 DNNLYVELGLQFNLGKTGWEKTPDLDAINAQHQAALDALNSRLRDAE-AENARLREALAN 261
D GL F GK+ + P Q Q + + + A E + +E
Sbjct: 233 DWQFNALAGLAFTFGKSSKKTAP---VYYEQEQPTVTTVVEQPASAPIVEQPQPKEEKIA 289
Query: 262 QKPVETISESVKELISTPISVFFNIDKTNIASQKDLVNVRALAKYAVDN-NNNLLVTGYA 320
++P++ +VFF ++ I + + + AL +Y N + VTGYA
Sbjct: 290 KEPLKQ-------------NVFFALNSARIQTDQQ-SKIAALVEYMEKNPAAKVNVTGYA 335
Query: 321 DSATGTPQRNQWLSEERAKTLANELVNMGVQSNKITQVGKGGVETLTPISFNRRATVQV 379
D TG P N LSE RAK +A L G+ S++I KG +T+ P S + V +
Sbjct: 336 DKETGNPVINLKLSEARAKNVAEALKAKGISSDRIAIDFKG--DTVQPYSTPKENRVSI 392
>gi|153807490|ref|ZP_01960158.1| hypothetical protein BACCAC_01770 [Bacteroides caccae ATCC 43185]
gi|149129852|gb|EDM21064.1| hypothetical protein BACCAC_01770 [Bacteroides caccae ATCC 43185]
Length = 788
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 67 PGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMF 126
P + IGKWF+P GLR+ VG +D P+ K+ + N+ N+
Sbjct: 273 PQFSAGIGKWFSPSSGLRLSGT------VGFSDTPSGSASGYFKHVDLHADYLLNINNVL 326
Query: 127 LGYSENRLLDIIPFVGAGVGRSMSHD---YYATGLSAGVQASARLSKFTRLYAEAGWNRY 183
GY E+R+ +I G + + D YA G+ GVQ S R+++ L+ E N Y
Sbjct: 327 WGYDEDRIFSLIGIAGVNLAGTKGVDETAKYAPGIGVGVQGSFRINRSVDLFIEPRLNVY 386
Query: 184 EGDLDGYDQYYGNRG 198
+Y G RG
Sbjct: 387 S------KRYAGGRG 395
>gi|156107996|gb|EDO09741.1| hypothetical protein BACOVA_05607 [Bacteroides ovatus ATCC 8483]
Length = 788
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 67 PGVALAIGKWFTPGLGLRVKAQGIWGKRVGDNDAPTSKVDNGNKYWIAQGQAMFNLTNMF 126
P + IGKWF+P GLR+ VG +D P+ K+ + N+ N+
Sbjct: 273 PQFSAGIGKWFSPSSGLRLSGT------VGLSDTPSGSASGYFKHVDLHADYLLNINNVL 326
Query: 127 LGYSENRLLDIIPFVGAGVGRSMSHD---YYATGLSAGVQASARLSKFTRLYAEAGWNRY 183
GY E+R+ +I G + + D YA G+ GVQ S R+++ L+ E +N Y
Sbjct: 327 WGYDEDRIFSLIGIAGVNLAGTKGVDKTAKYAPGIGVGVQGSFRINRSVDLFIEPRFNVY 386
Query: 184 EGDLDG 189
G
Sbjct: 387 NKKYAG 392
>gi|156860604|gb|EDO54035.1| hypothetical protein BACUNI_02038 [Bacteroides uniformis ATCC 8492]
Length = 197
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 226 DLDAINAQHQAALDALNSRLRDAEAENARLREALANQKPVETISESVKEL-ISTPISVFF 284
D DA+NA+ ++ S L A+A+ A + ALAN KP + E KE+ ++ P ++FF
Sbjct: 79 DEDAVNAE----INRYRSELAQAQADLANCKNALANAKP--EVKEVTKEVEVAGPRAIFF 132
Query: 285 NIDKTNIASQKDLVNVRALAKYAVDN-NNNLLVTGYADSATGTPQRNQWLSEERAKTLAN 343
I + VN+ AK N + V GYAD ATG+ NQ LSE+RA+ + +
Sbjct: 133 KIGSARLDDYGK-VNIELAAKILKANPDKKYKVAGYADKATGSASWNQKLSEKRAQVVYD 191
Query: 344 ELVNMG 349
L+ G
Sbjct: 192 ALIAQG 197
>gi|126647748|ref|ZP_01720253.1| peptidoglycan associated periplasmic protein [Algoriphagus sp. PR1]
gi|126576424|gb|EAZ80702.1| peptidoglycan associated periplasmic protein [Algoriphagus sp. PR1]
Length = 640
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 281 SVFFNIDKTNIASQKDLVNVRALAKYAVDNNN-NLLVTGYADSATGTPQRNQWLSEERAK 339
++FF+ DK ++ + L +++ L K+ +N+N N+L++G+ D+ G+P NQ LS +RA+
Sbjct: 536 NIFFDFDKYDLKPES-LSSLKRLLKFLKENSNVNILISGHTDN-VGSPSYNQELSLKRAQ 593
Query: 340 TLANELVNMGVQSNKITQVGKGGVETLTP------ISFNRRATVQV 379
++ LV G+ ++ GKG E + P + NRR TV+V
Sbjct: 594 SVQQYLVEQGMHPGRVMVEGKGDKEPMVPNTNSQNQALNRRITVKV 639
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,434,232,555
Number of Sequences: 5470121
Number of extensions: 61476833
Number of successful extensions: 163955
Number of sequences better than 1.0e-05: 39
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 163831
Number of HSP's gapped (non-prelim): 64
length of query: 381
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 247
effective length of database: 1,161,091,510
effective search space: 286789602970
effective search space used: 286789602970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)