BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SSA_0529
(93 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|125717393|ref|YP_001034526.1| Ethanolamine utilization p... 180 2e-44
gi|106894129|ref|ZP_01361251.1| Ethanolamine utilization pr... 116 5e-25
gi|16800217|ref|NP_470485.1| hypothetical protein lin1148 [... 87 2e-16
gi|16803224|ref|NP_464709.1| hypothetical protein lmo1184 [... 87 3e-16
gi|153195961|ref|ZP_01940369.1| hypothetical protein LMRG_0... 87 3e-16
gi|116872558|ref|YP_849339.1| ethanolamine utilization prot... 86 5e-16
gi|78358313|ref|YP_389762.1| ethanolamine utilization prote... 83 5e-15
gi|29376178|ref|NP_815332.1| carbon dioxide concentrating m... 82 7e-15
gi|18309889|ref|NP_561823.1| ethanolamine utilization prote... 81 2e-14
gi|106885038|ref|ZP_01352403.1| Ethanolamine utilization pr... 77 3e-13
gi|126651149|ref|ZP_01723359.1| carboxysome protein, putati... 76 5e-13
gi|148322709|gb|EDK87959.1| ethanolamine utilization protei... 74 2e-12
gi|126699532|ref|YP_001088429.1| putative ethanolamine/prop... 74 3e-12
gi|19703439|ref|NP_603001.1| Ethanolamine utilization prote... 74 3e-12
gi|106893691|ref|ZP_01360815.1| ethanolamine utilization pr... 73 4e-12
gi|89897709|ref|YP_521196.1| hypothetical protein DSY4963 [... 73 4e-12
gi|150388108|ref|YP_001318157.1| Ethanolamine utilization p... 72 1e-11
gi|85059862|ref|YP_455564.1| ethanolamine utilization prote... 71 2e-11
gi|106884886|ref|ZP_01352253.1| Ethanolamine utilization pr... 70 3e-11
gi|154495804|ref|ZP_02034500.1| hypothetical protein BACCAP... 70 4e-11
gi|134301100|ref|YP_001114596.1| Ethanolamine utilization p... 70 5e-11
gi|89897744|ref|YP_521231.1| hypothetical protein DSY4998 [... 69 8e-11
gi|87312235|ref|ZP_01094336.1| probable ethanolamine utiliz... 69 9e-11
gi|153939206|ref|YP_001391405.1| putative polyhedral organe... 69 9e-11
gi|148380066|ref|YP_001254607.1| ethanolamine utilization p... 69 1e-10
gi|106893961|ref|ZP_01361084.1| Ethanolamine utilization pr... 68 2e-10
gi|26250348|ref|NP_756388.1| Ethanolamine utilization prote... 66 5e-10
gi|83596378|gb|ABC25535.1| PduN [Roseburia inulinivorans] 66 5e-10
gi|154497257|ref|ZP_02035953.1| hypothetical protein BACCAP... 66 6e-10
gi|109647529|ref|ZP_01371432.1| Ethanolamine utilization pr... 66 6e-10
gi|89893158|ref|YP_516645.1| hypothetical protein DSY0412 [... 66 6e-10
gi|22298488|ref|NP_681735.1| carbon dioxide concentrating m... 64 2e-09
gi|83592248|ref|YP_426000.1| Ethanolamine utilization prote... 64 2e-09
gi|153893385|ref|ZP_02014119.1| Ethanolamine utilization pr... 64 4e-09
gi|134299164|ref|YP_001112660.1| Ethanolamine utilization p... 63 4e-09
gi|86606274|ref|YP_475037.1| carbon dioxide concentrating m... 63 5e-09
gi|150391556|ref|YP_001321605.1| Ethanolamine utilization p... 63 5e-09
gi|154503205|ref|ZP_02040265.1| hypothetical protein RUMGNA... 63 5e-09
gi|86609253|ref|YP_478015.1| carbon dioxide concentrating m... 63 6e-09
gi|106885188|ref|ZP_01352552.1| Ethanolamine utilization pr... 63 7e-09
gi|32472044|ref|NP_865038.1| probable ethanolamine utilizat... 62 7e-09
gi|111075055|gb|ABH04899.1| ethanolamine utilization protei... 62 1e-08
gi|119509596|ref|ZP_01628743.1| Ethanolamine utilization pr... 62 1e-08
gi|150392256|ref|YP_001322305.1| Ethanolamine utilization p... 59 7e-08
gi|116619464|ref|YP_821620.1| Ethanolamine utilization prot... 59 8e-08
gi|153953483|ref|YP_001394248.1| Predicted microcompartment... 58 1e-07
gi|78045187|ref|YP_359543.1| ethanolamine utilization prote... 58 2e-07
gi|2331051|gb|AAB66836.1| carbon dioxide concentrating mech... 57 2e-07
gi|56750143|ref|YP_170844.1| carbon dioxide concentrating m... 57 3e-07
gi|23128654|ref|ZP_00110494.1| COG4576: Carbon dioxide conc... 57 4e-07
gi|90422684|ref|YP_531054.1| Ethanolamine utilization prote... 56 5e-07
gi|126657857|ref|ZP_01729010.1| carbon dioxide concentratin... 56 5e-07
gi|120554160|ref|YP_958511.1| Ethanolamine utilization prot... 56 7e-07
gi|67920778|ref|ZP_00514297.1| Ethanolamine utilization pro... 56 7e-07
gi|37521663|ref|NP_925040.1| carbon dioxide concentrating m... 56 8e-07
gi|113477304|ref|YP_723365.1| Ethanolamine utilization prot... 55 9e-07
gi|150018867|ref|YP_001311121.1| Ethanolamine utilization p... 55 2e-06
gi|77977303|ref|ZP_00832755.1| COG4576: Carbon dioxide conc... 54 2e-06
gi|120597251|ref|YP_961825.1| Ethanolamine utilization prot... 54 3e-06
gi|116619463|ref|YP_821619.1| Ethanolamine utilization prot... 54 3e-06
gi|116872537|ref|YP_849318.1| ethanolamine and carbon dioxi... 54 3e-06
gi|118443223|ref|YP_878958.1| Ethanolamine utilization prot... 54 4e-06
gi|47095004|ref|ZP_00232617.1| propanediol utilization: pol... 54 4e-06
gi|119718255|ref|YP_925220.1| Ethanolamine utilization prot... 54 4e-06
gi|47091963|ref|ZP_00229757.1| propanediol utilization: pol... 53 6e-06
gi|16803203|ref|NP_464688.1| hypothetical protein lmo1163 [... 53 6e-06
gi|16800196|ref|NP_470464.1| hypothetical protein lin1127 [... 53 6e-06
gi|146291312|ref|YP_001181736.1| Ethanolamine utilization p... 52 9e-06
>gi|125717393|ref|YP_001034526.1| Ethanolamine utilization protein, putative [Streptococcus
sanguinis SK36]
gi|125497310|gb|ABN43976.1| Ethanolamine utilization protein, putative [Streptococcus
sanguinis SK36]
Length = 93
Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG
Sbjct: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY 93
SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY
Sbjct: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY 93
>gi|106894129|ref|ZP_01361251.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium sp. OhILAs]
gi|106774614|gb|EAT31176.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium sp. OhILAs]
Length = 90
Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/87 (63%), Positives = 70/87 (80%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF+GKV GSLWATRKDE LNGLKFL++E+Q NE ++DP L++ D +GAG G+ V++TTG
Sbjct: 1 MFIGKVVGSLWATRKDEKLNGLKFLLIEKQRNEQEADPDLVVAVDRVGAGIGESVLITTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDY 87
SS R+S + IPVDMV+V IID VDY
Sbjct: 61 SSGRLSFDGKGIPVDMVIVGIIDTVDY 87
>gi|16800217|ref|NP_470485.1| hypothetical protein lin1148 [Listeria innocua Clip11262]
gi|16413607|emb|CAC96379.1| lin1148 [Listeria innocua]
Length = 89
Score = 87.4 bits (215), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 58/86 (67%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GSLWATRKDE LNGLK L+VE +E + ++ AD GAG GD V+VTTG
Sbjct: 1 MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDEVEDKRHSIVAADNAGAGNGDLVLVTTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+AR S IPVD +V IID V+
Sbjct: 61 SAARASTGDNTIPVDACIVGIIDSVE 86
>gi|16803224|ref|NP_464709.1| hypothetical protein lmo1184 [Listeria monocytogenes EGD-e]
gi|46907404|ref|YP_013793.1| carboxysome protein, putative [Listeria monocytogenes str. 4b
F2365]
gi|47091985|ref|ZP_00229779.1| carboxysome protein, putative [Listeria monocytogenes str. 4b
H7858]
gi|47095026|ref|ZP_00232639.1| carboxysome protein, putative [Listeria monocytogenes str. 1/2a
F6854]
gi|153166544|ref|ZP_01927084.1| hypothetical protein LMHG_02208 [Listeria monocytogenes FSL
N1-017]
gi|153174253|ref|ZP_01929792.1| hypothetical protein LMIG_02505 [Listeria monocytogenes FSL
N3-165]
gi|153179272|ref|ZP_01932491.1| hypothetical protein LMMG_00142 [Listeria monocytogenes F6900]
gi|153184652|ref|ZP_01935379.1| hypothetical protein LMOG_01288 [Listeria monocytogenes J0161]
gi|153190569|ref|ZP_01937958.1| hypothetical protein LMPG_01128 [Listeria monocytogenes J2818]
gi|153201895|ref|ZP_01943652.1| hypothetical protein LMSG_01311 [Listeria monocytogenes HPB2262]
gi|16410600|emb|CAC99262.1| lmo1184 [Listeria monocytogenes]
gi|46880672|gb|AAT03970.1| putative carboxysome protein [Listeria monocytogenes str. 4b
F2365]
gi|47016644|gb|EAL07564.1| carboxysome protein, putative [Listeria monocytogenes str. 1/2a
F6854]
gi|47019701|gb|EAL10440.1| carboxysome protein, putative [Listeria monocytogenes str. 4b
H7858]
gi|126942623|gb|EBA20360.1| hypothetical protein LMOG_01288 [Listeria monocytogenes J0161]
gi|127765951|gb|EBA26295.1| hypothetical protein LMPG_01128 [Listeria monocytogenes J2818]
gi|133727471|gb|EBA29169.1| hypothetical protein LMHG_02208 [Listeria monocytogenes FSL
N1-017]
gi|133730451|gb|EBA32149.1| hypothetical protein LMIG_02505 [Listeria monocytogenes FSL
N3-165]
gi|133732757|gb|EBA34455.1| hypothetical protein LMMG_00142 [Listeria monocytogenes F6900]
gi|133735684|gb|EBA37382.1| hypothetical protein LMSG_01311 [Listeria monocytogenes HPB2262]
Length = 89
Score = 87.0 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 58/86 (67%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GSLWATRKDE LNGLK L+VE +E + ++ AD GAG GD V+VTTG
Sbjct: 1 MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+AR S IPVD +V IID V+
Sbjct: 61 SAARASTGDNTIPVDACIVGIIDSVE 86
>gi|153195961|ref|ZP_01940369.1| hypothetical protein LMRG_00630 [Listeria monocytogenes 10403S]
gi|127634243|gb|EBA23629.1| hypothetical protein LMRG_00630 [Listeria monocytogenes 10403S]
Length = 89
Score = 87.0 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 58/86 (67%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GSLWATRKDE LNGLK L+VE +E + ++ AD GAG GD V+VTTG
Sbjct: 1 MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+AR S IPVD +V IID V+
Sbjct: 61 SAARASTGDNRIPVDACIVGIIDSVE 86
>gi|116872558|ref|YP_849339.1| ethanolamine utilization protein, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741436|emb|CAK20560.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 89
Score = 86.3 bits (212), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 58/86 (67%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GSLWATRKDE LNGLK L+VE +E + ++ AD GAG GD V+VTTG
Sbjct: 1 MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDELEDVRHSIVAADNAGAGNGDIVLVTTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+AR S IPVD +V IID V+
Sbjct: 61 SAARASTGDNTIPVDACIVGIIDSVE 86
>gi|78358313|ref|YP_389762.1| ethanolamine utilization protein eutN [Desulfovibrio
desulfuricans G20]
gi|78220718|gb|ABB40067.1| ethanolamine utilization protein eutN [Desulfovibrio
desulfuricans G20]
Length = 91
Score = 82.8 bits (203), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV G++WATRK++ LNGLK +VV+R+ +S + DC+GAG ++V+V TG
Sbjct: 1 MIIGKVIGNVWATRKEDALNGLKLMVVQREDACSRSSHESFVAVDCVGAGTDERVLVVTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
SSAR +L + PVD +V IID+V
Sbjct: 61 SSARKALGNPDAPVDAAIVGIIDEV 85
>gi|29376178|ref|NP_815332.1| carbon dioxide concentrating mechanism protein CcmL, putative
[Enterococcus faecalis V583]
gi|29343641|gb|AAO81402.1| carbon dioxide concentrating mechanism protein CcmL, putative
[Enterococcus faecalis V583]
Length = 87
Score = 82.4 bits (202), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GSLW+TRKDE LNG KF++V+ LN+ LI AD GAG GD+V+++ G
Sbjct: 1 MLLGKVTGSLWSTRKDEKLNGWKFMMVD-ILNQEDEKQGFLIAADNAGAGVGDKVLISQG 59
Query: 61 SSARMSLNKVNIPVDMVVVAIID 83
++AR+S N+P+D ++V +ID
Sbjct: 60 NAARISAEDPNVPIDAMIVGVID 82
>gi|18309889|ref|NP_561823.1| ethanolamine utilization protein [Clostridium perfringens str.
13]
gi|110800632|ref|YP_695349.1| ethanolamine utilization protein EutN [Clostridium perfringens
ATCC 13124]
gi|18144567|dbj|BAB80613.1| ethanolamine utilization protein [Clostridium perfringens str.
13]
gi|110675279|gb|ABG84266.1| ethanolamine utilization protein EutN [Clostridium perfringens
ATCC 13124]
Length = 90
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V G++WATRKDE LNG KFL+V+ +++ + L + AD GAG GD V++T G
Sbjct: 1 MEIGRVVGNVWATRKDEKLNGQKFLIVKLLVSKDKEKEGLFVAADNAGAGIGDIVLITKG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSD 90
+AR S+ +P+D +V I+D +D D
Sbjct: 61 GAARQSIGNREVPIDAAIVGIVDSIDIEED 90
>gi|106885038|ref|ZP_01352403.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium phytofermentans ISDg]
gi|106767388|gb|EAT24102.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium phytofermentans ISDg]
Length = 91
Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 58/91 (63%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GS+WAT+KDE LNG K LVV+ + +++ AD +GAG GDQV+V G
Sbjct: 1 MELGKVIGSVWATKKDEKLNGNKLLVVQITDAYAKPSKGVIVAADIVGAGAGDQVLVVRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDE 91
SAR +L+ + P+D +V I+D V DE
Sbjct: 61 GSARYALSASSSPIDAAIVGIVDSVVVEDDE 91
>gi|126651149|ref|ZP_01723359.1| carboxysome protein, putative [Bacillus sp. B14905]
gi|126591987|gb|EAZ86053.1| carboxysome protein, putative [Bacillus sp. B14905]
Length = 94
Score = 76.3 bits (186), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V GS+WATRK+E LNGLK L+++ + Q ++ AD IGAG GD V++T+G
Sbjct: 1 MQMGRVIGSVWATRKEEGLNGLKLLIIQPIDSNQQPIRTEIVAADRIGAGIGDDVLITSG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEE 92
S+R + + +P+D VV+ IID + E+
Sbjct: 61 GSSRYIMKENPLPIDAVVIGIIDSTEVMRGED 92
>gi|148322709|gb|EDK87959.1| ethanolamine utilization protein EutN [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 82
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 62/86 (72%), Gaps = 6/86 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V G++WAT+K + L+GLKFL+V+ + N+ ++ D +GAG G++V+++TG
Sbjct: 1 MLIGEVIGNVWATKKYDGLDGLKFLIVKTEDNKR------MVAFDSVGAGIGEKVIISTG 54
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
SSAR +LN +IPVD ++ IID +D
Sbjct: 55 SSARNALNMRDIPVDAAIIGIIDGMD 80
>gi|126699532|ref|YP_001088429.1| putative ethanolamine/propanediol utilization protein
[Clostridium difficile 630]
gi|145953916|ref|ZP_01802923.1| hypothetical protein CdifQ_04002205 [Clostridium difficile
QCD-32g58]
gi|115250969|emb|CAJ68798.1| putative ethanolamine/propanediol utilization protein
[Clostridium difficile 630]
Length = 90
Score = 73.9 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV G++WATRKDE L G K LVV+ + ++ AD GAG GD V+++ G
Sbjct: 1 MDIGKVVGNVWATRKDEKLCGQKLLVVKILKTKDTYKEGFMVAADNAGAGNGDLVLISKG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
SSAR S+ K ++PVD +V ++D +
Sbjct: 61 SSARESIEKSHVPVDATIVGVVDSFE 86
>gi|19703439|ref|NP_603001.1| Ethanolamine utilization protein eutN [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713515|gb|AAL94300.1| Ethanolamine utilization protein eutN [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 82
Score = 73.6 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 62/86 (72%), Gaps = 6/86 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V G++WAT+K + L+GLKFL+V+ + N+ ++ D +GAG G++V+++TG
Sbjct: 1 MLIGEVIGNVWATKKYDGLDGLKFLIVKTEDNKR------MVAFDSVGAGIGEKVIISTG 54
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
SSAR +LN ++PVD ++ IID +D
Sbjct: 55 SSARNALNMRDVPVDAAIIGIIDGMD 80
>gi|106893691|ref|ZP_01360815.1| ethanolamine utilization protein [Clostridium sp. OhILAs]
gi|106774911|gb|EAT31471.1| ethanolamine utilization protein [Clostridium sp. OhILAs]
Length = 86
Score = 73.2 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF G++ S+WATRK + L+G KF++ E + + +IVAD +GAG GD+V++TTG
Sbjct: 1 MFAGRLVDSIWATRKSDRLSGFKFVMAE--IIDGSDAGKRIIVADTVGAGIGDRVIITTG 58
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
S+AR L +IPVD V+ IID+
Sbjct: 59 SAARKMLGNDDIPVDAAVIGIIDE 82
>gi|89897709|ref|YP_521196.1| hypothetical protein DSY4963 [Desulfitobacterium hafniense Y51]
gi|109647977|ref|ZP_01371880.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfitobacterium hafniense DCB-2]
gi|89337157|dbj|BAE86752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109641067|gb|EAT50622.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfitobacterium hafniense DCB-2]
Length = 97
Score = 73.2 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVE--RQLNEHQSDPAL------LIVADCIGAGEG 52
M + V G++W+TRK+E L G KFLVV+ E P LI AD IGAGE
Sbjct: 1 MILAYVLGNVWSTRKEEALKGFKFLVVQPVTLTYEESGRPRFEKYGNTLIAADRIGAGET 60
Query: 53 DQVMVTTGSSARMSLNKVNIPVDMVVVAIIDK 84
+ VM+ +GSSAR SL P+D VV+ IIDK
Sbjct: 61 EIVMIASGSSARQSLEDQRAPIDAVVIGIIDK 92
>gi|150388108|ref|YP_001318157.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Alkaliphilus metalliredigens QYMF]
gi|149947970|gb|ABR46498.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Alkaliphilus metalliredigens QYMF]
Length = 94
Score = 72.0 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV G++WATRKDE LNGLK LV+E + D +GAG G++V+V G
Sbjct: 1 MIIGKVIGNVWATRKDETLNGLKLLVIESIDYGRNQRGESFVAVDGVGAGIGERVLVVKG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
++AR +L K VD +V IID+V+
Sbjct: 61 NAARKALQKEGAAVDATIVGIIDEVE 86
>gi|85059862|ref|YP_455564.1| ethanolamine utilization protein EutN [Sodalis glossinidius str.
'morsitans']
gi|84780382|dbj|BAE75159.1| ethanolamine utilization protein EutN [Sodalis glossinidius str.
'morsitans']
Length = 90
Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVA-DCIGAGEGDQVMVTT 59
M++ KV G+L +T K +LNG K L+V R L+EH VA D +GAG G+ V+VTT
Sbjct: 1 MYLAKVTGALVSTTKHASLNGAKLLIVAR-LDEHYRPTGTAQVAVDFVGAGNGETVIVTT 59
Query: 60 GSSARMSLNKVNIPVDMVVVAIIDKVDYH 88
GSSARMS +K + +D VV I+D +D++
Sbjct: 60 GSSARMSTSKEHSVIDAAVVGIVDSLDFN 88
>gi|106884886|ref|ZP_01352253.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium phytofermentans ISDg]
gi|106767652|gb|EAT24364.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium phytofermentans ISDg]
Length = 87
Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M ++ ++WATRK ++LNGLKF++ E + + LIVAD I AG GD+V+V+TG
Sbjct: 1 MVAARLIDNVWATRKTDSLNGLKFMLAEIIGGTREGER--LIVADIISAGIGDRVIVSTG 58
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
SSAR L +IPVD VV+ IID+
Sbjct: 59 SSARRMLESDDIPVDAVVIGIIDE 82
>gi|154495804|ref|ZP_02034500.1| hypothetical protein BACCAP_00083 [Bacteroides capillosus ATCC
29799]
gi|150275002|gb|EDN02050.1| hypothetical protein BACCAP_00083 [Bacteroides capillosus ATCC
29799]
Length = 77
Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 8/84 (9%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G V+G++W+T+K L G FL V + LLI ADC+GAGEG++V+V TG
Sbjct: 1 MLLGTVEGNIWSTKKSPGLFGKSFLTV-------RVGGELLICADCVGAGEGERVLVATG 53
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
+AR++ K ++PVD VV I+D+
Sbjct: 54 GAARVAAGK-DVPVDAAVVGIVDQ 76
>gi|134301100|ref|YP_001114596.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfotomaculum reducens MI-1]
gi|134053800|gb|ABO51771.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfotomaculum reducens MI-1]
Length = 86
Score = 69.7 bits (169), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 6/86 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVE--RQLNEHQSDPALLIVADCIGAGEGDQVMVT 58
M KV ++WATRK ++L GLKF++VE ++ +S +I AD IGAG G++V+V
Sbjct: 1 MIAAKVIDNIWATRKADSLRGLKFMLVEVLGGIDAGRS----MIAADTIGAGIGERVLVC 56
Query: 59 TGSSARMSLNKVNIPVDMVVVAIIDK 84
TGSSAR L++ ++P+D V+V IID+
Sbjct: 57 TGSSARKMLDRDDVPIDAVIVGIIDE 82
>gi|89897744|ref|YP_521231.1| hypothetical protein DSY4998 [Desulfitobacterium hafniense Y51]
gi|109647941|ref|ZP_01371844.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfitobacterium hafniense DCB-2]
gi|89337192|dbj|BAE86787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109641031|gb|EAT50586.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfitobacterium hafniense DCB-2]
Length = 86
Score = 68.9 bits (167), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M KV ++WATRK ++L GLKF++VE + L+I AD I AG G++V+V TG
Sbjct: 1 MIAAKVIDNIWATRKADSLRGLKFMLVEVLGGIDKG--RLIIAADTISAGIGERVLVCTG 58
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
SSAR L + +IP+D V+V IID+
Sbjct: 59 SSARKMLGQDDIPIDAVIVGIIDE 82
>gi|87312235|ref|ZP_01094336.1| probable ethanolamine utilization protein EutN [Blastopirellula
marina DSM 3645]
gi|87285060|gb|EAQ76993.1| probable ethanolamine utilization protein EutN [Blastopirellula
marina DSM 3645]
Length = 146
Score = 68.9 bits (167), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 6/90 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALL------IVADCIGAGEGDQ 54
MF+ KV GS+ AT+K E++ G K LVVE E Q +L+ I D +GAG GD
Sbjct: 1 MFIAKVTGSVIATQKVESMVGNKLLVVEPYRLEPQDRSSLVTTGRTFIAVDMLGAGVGDY 60
Query: 55 VMVTTGSSARMSLNKVNIPVDMVVVAIIDK 84
V++T GSSAR++ ++P+D VVV I+D+
Sbjct: 61 VLITQGSSARLTPETKHLPIDCVVVGIVDQ 90
>gi|153939206|ref|YP_001391405.1| putative polyhedral organelle formation protein [Clostridium
botulinum F str. Langeland]
gi|152935102|gb|ABS40600.1| putative polyhedral organelle formation protein [Clostridium
botulinum F str. Langeland]
Length = 87
Score = 68.9 bits (167), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M K+ ++WATRK E+L+GLKF++ E + IV D I AG GD+V+V+TG
Sbjct: 1 MIAAKLIDNVWATRKAESLSGLKFMLAEEIGGGDEG--RRFIVVDIISAGIGDRVIVSTG 58
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
SSAR L NIPVD VV+ IID+
Sbjct: 59 SSARRMLGDDNIPVDAVVIGIIDE 82
>gi|148380066|ref|YP_001254607.1| ethanolamine utilization protein [Clostridium botulinum A str.
ATCC 3502]
gi|153931448|ref|YP_001384363.1| putative polyhedral organelle formation protein [Clostridium
botulinum A str. ATCC 19397]
gi|153936682|ref|YP_001387900.1| putative polyhedral organelle formation protein [Clostridium
botulinum A str. Hall]
gi|148289550|emb|CAL83651.1| putative ethanolamine utilization protein [Clostridium botulinum
A str. ATCC 3502]
gi|152927492|gb|ABS32992.1| putative polyhedral organelle formation protein [Clostridium
botulinum A str. ATCC 19397]
gi|152932596|gb|ABS38095.1| putative polyhedral organelle formation protein [Clostridium
botulinum A str. Hall]
Length = 87
Score = 68.6 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVER--QLNEHQSDPALLIVADCIGAGEGDQVMVT 58
M ++ ++WATRK E+L+GLKF++ E ++E + IV D I AG GD+V+V+
Sbjct: 1 MIAARLIDNVWATRKAESLSGLKFMLAEEIGGIDEGRR----FIVVDIISAGIGDRVIVS 56
Query: 59 TGSSARMSLNKVNIPVDMVVVAIIDK 84
TGSSAR L NIPVD VV+ IID+
Sbjct: 57 TGSSARRMLGDDNIPVDAVVIGIIDE 82
>gi|106893961|ref|ZP_01361084.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium sp. OhILAs]
gi|106774762|gb|EAT31323.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium sp. OhILAs]
Length = 145
Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V G++ ATRKDE L G K ++ + E + LI D +GAG G+ V+ T G
Sbjct: 50 MHIGRVIGTVVATRKDERLIGCKLMITQPVNVEREPIGEALITVDTVGAGIGELVIYTMG 109
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEE 92
++AR + +K+ P+D +V IID +D + +E
Sbjct: 110 TAARYAADKLQSPIDASIVGIIDNMDVYIGKE 141
>gi|26250348|ref|NP_756388.1| Ethanolamine utilization protein eutN [Escherichia coli CFT073]
gi|83586699|ref|ZP_00925331.1| COG4576: Carbon dioxide concentrating mechanism/carboxysome shell
protein [Escherichia coli 101-1]
gi|117626452|ref|YP_859775.1| ethanolamine utilization protein EutN [Escherichia coli APEC O1]
gi|26110778|gb|AAN82962.1|AE016769_77 Ethanolamine utilization protein eutN [Escherichia coli CFT073]
gi|115515576|gb|ABJ03651.1| ethanolamine utilization protein EutN [Escherichia coli APEC O1]
Length = 89
Score = 66.2 bits (160), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M++ KV G+L +T K +LNG K L+V R +Q + D +GAG G+ V++TTG
Sbjct: 1 MYLAKVTGALVSTTKHASLNGSKLLIVARLDENYQPTVHAQVAVDTVGAGNGEIVIITTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
SSARMS NK + +D VV I+D ++
Sbjct: 61 SSARMSNNKDHSVIDAAVVGIVDSLE 86
>gi|83596378|gb|ABC25535.1| PduN [Roseburia inulinivorans]
Length = 89
Score = 66.2 bits (160), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GSL++TRK E L G KF++VE + ++ + L+ D IGAG G+ V+V G
Sbjct: 1 MIIGKVVGSLFSTRKSEKLVGNKFMIVE-PVESMRNTGSRLVAIDIIGAGIGEYVLVAQG 59
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
S+AR+ + + P+D +V IID+
Sbjct: 60 SAARIGCDMADAPIDAAIVGIIDE 83
>gi|154497257|ref|ZP_02035953.1| hypothetical protein BACCAP_01550 [Bacteroides capillosus ATCC
29799]
gi|150273656|gb|EDN00784.1| hypothetical protein BACCAP_01550 [Bacteroides capillosus ATCC
29799]
Length = 99
Score = 66.2 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVER-QLNEHQSDPALLIVADCIGAGEGDQVMVTT 59
M V KV G++WATRK++ L GLK L+V+ + D ++ AD IGAG G+ V+V +
Sbjct: 5 MRVAKVIGTIWATRKEDRLAGLKLLLVQPLDVLTGGKDGLPIVSADIIGAGVGETVLVVS 64
Query: 60 GSSARMSLNKVNIPVDMVVVAIID 83
GSSAR ++ + IPVD VV I+D
Sbjct: 65 GSSARSAVGDMGIPVDATVVGIVD 88
>gi|109647529|ref|ZP_01371432.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfitobacterium hafniense DCB-2]
gi|109640619|gb|EAT50174.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfitobacterium hafniense DCB-2]
Length = 96
Score = 66.2 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V S+WATRK ++L G K ++V+ H +++ AD IGAG G++V+VT G
Sbjct: 1 MRIGRVLNSIWATRKADSLIGTKLMIVQLLDRPHGELGPIIVAADIIGAGIGEKVLVTEG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
SSAR N + P+D +V IID+
Sbjct: 61 SSARNMDNFNDSPIDSTIVGIIDE 84
>gi|89893158|ref|YP_516645.1| hypothetical protein DSY0412 [Desulfitobacterium hafniense Y51]
gi|89332606|dbj|BAE82201.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 96
Score = 65.9 bits (159), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V S+WATRK ++L G K ++V+ H +++ AD IGAG G++V+VT G
Sbjct: 1 MRIGRVINSIWATRKADSLIGTKLMIVQLLDRPHGELGPIIVAADIIGAGIGEKVLVTEG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
SSAR N + P+D +V IID+
Sbjct: 61 SSARNMDNFNDSPIDSTIVGIIDE 84
>gi|22298488|ref|NP_681735.1| carbon dioxide concentrating mechanism protein
[Thermosynechococcus elongatus BP-1]
gi|22294668|dbj|BAC08497.1| carbon dioxide concentrating mechanism protein
[Thermosynechococcus elongatus BP-1]
Length = 99
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + +V G++ +T+K++ L G+KFLV++ + + P + AD +GAG+ + V+V+ G
Sbjct: 1 MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
S+AR +N + P+D VVAIID V
Sbjct: 61 SAARHIINGTDKPIDAAVVAIIDTV 85
>gi|83592248|ref|YP_426000.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Rhodospirillum rubrum ATCC 11170]
gi|83575162|gb|ABC21713.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Rhodospirillum rubrum ATCC 11170]
Length = 89
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M++GKV G++ +T K+E+L+G K LVV R + D + +V D +GAG G+ V+V+ G
Sbjct: 1 MYLGKVIGTVVSTSKNESLSGTKLLVVARLTEKLIPDGSTQVVVDTVGAGNGEIVIVSCG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
SSAR S K + +D VV I+D V+
Sbjct: 61 SSARQSTGKDHSVIDAAVVGIVDTVE 86
>gi|153893385|ref|ZP_02014119.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Opitutaceae bacterium TAV2]
gi|151580541|gb|EDN44360.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Opitutaceae bacterium TAV2]
Length = 102
Score = 63.5 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPA-------LLIVADCIGAGEGD 53
MF+ +V GS+ AT+KD + G K LV+ R L ++DP ++ D +GAG G+
Sbjct: 1 MFLARVIGSIVATKKDAAMTGRKLLVL-RPLLIDEADPTKFRSGSNTIVAVDALGAGTGE 59
Query: 54 QVMVTTGSSARMSLNKVNIPVDMVVVAIIDKVD 86
V+ GSSAR + N+PVD V+ I+D VD
Sbjct: 60 TVLFCQGSSARGTEGMKNLPVDAAVIGIVDTVD 92
>gi|134299164|ref|YP_001112660.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfotomaculum reducens MI-1]
gi|134051864|gb|ABO49835.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Desulfotomaculum reducens MI-1]
Length = 96
Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVE----------RQLNEHQSDPALLIVADCIGAG 50
M +GKV S+WATRK+ +L G+KF++VE + + +++ AD +GAG
Sbjct: 1 MILGKVVSSVWATRKETSLTGVKFMIVEILETLSDLEDSDKIDRRKKRKVVVAADLVGAG 60
Query: 51 EGDQVMVTTGSSARMSLNKVNIPVDMVVVAIIDK 84
G++V+V+ GSSAR PVDM ++ IID+
Sbjct: 61 IGEKVLVSRGSSARQIEGLQETPVDMAIIGIIDE 94
>gi|86606274|ref|YP_475037.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus sp. JA-3-3Ab]
gi|86554816|gb|ABC99774.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus sp. JA-3-3Ab]
Length = 99
Score = 63.2 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + V+G++ +T+KD +L G+KFLVV+ E + P + AD +GAG + V+V+ G
Sbjct: 1 MRIAIVRGTVTSTQKDPSLTGVKFLVVQYVDLEGRPQPDYAVAADPVGAGAEEWVLVSQG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
S+AR P+D VV+AIID V
Sbjct: 61 SAARQPQGNETRPLDAVVMAIIDTV 85
>gi|150391556|ref|YP_001321605.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Alkaliphilus metalliredigens QYMF]
gi|149951418|gb|ABR49946.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Alkaliphilus metalliredigens QYMF]
Length = 87
Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GK+ ++WAT+K L+G KF++ E ++ IV D +GAG GD V+V TG
Sbjct: 1 MLIGKLINNVWATKKAHALDGFKFMLAEEIQGSNKG--RRFIVVDIVGAGIGDVVIVCTG 58
Query: 61 SSARMSLNKVNIPVDMVVVAIIDK 84
S AR L +PVD VV I+D+
Sbjct: 59 SGARKMLCNDELPVDAAVVGIVDE 82
>gi|154503205|ref|ZP_02040265.1| hypothetical protein RUMGNA_01029 [Ruminococcus gnavus ATCC
29149]
gi|153796199|gb|EDN78619.1| hypothetical protein RUMGNA_01029 [Ruminococcus gnavus ATCC
29149]
Length = 88
Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M GKV GS+ +TRK ENL G KF++V+ L+ Q+ LI D IGAG G+ V+V G
Sbjct: 1 MIAGKVVGSVISTRKCENLVGNKFMIVD-VLDHMQTSGKQLIAIDKIGAGIGEYVLVAQG 59
Query: 61 SSARMSLNKVNIPVDMVVVAIID 83
S+AR+ + P+D +V IID
Sbjct: 60 SAARIGCGMSDAPIDAAIVGIID 82
>gi|86609253|ref|YP_478015.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557795|gb|ABD02752.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 99
Score = 62.8 bits (151), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + V+G++ +T+KD +L G+KFL+V+ E Q P + AD +GAG + V+V+ G
Sbjct: 1 MRIAIVRGTVTSTQKDPSLTGVKFLLVQYVDLEGQPQPDYAVAADPVGAGIDEWVLVSQG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
S+AR P+D VV+AIID V
Sbjct: 61 SAARQPQGNQTRPLDAVVMAIIDTV 85
>gi|106885188|ref|ZP_01352552.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium phytofermentans ISDg]
gi|106767360|gb|EAT24075.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium phytofermentans ISDg]
Length = 86
Score = 62.8 bits (151), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV GS+ +TRK+ENL G KF++VE L Q + ++ D +GAG G+ V+V G
Sbjct: 1 MLIGKVIGSVVSTRKNENLVGNKFMIVE-PLKSFQENR--IVAIDNVGAGIGEYVLVAQG 57
Query: 61 SSARMSLNKVNIPVDMVVVAIID 83
S+AR+ N P+D +V IID
Sbjct: 58 SAARIGCGAENSPIDSAIVGIID 80
>gi|32472044|ref|NP_865038.1| probable ethanolamine utilization protein EutN [Rhodopirellula
baltica SH 1]
gi|32397416|emb|CAD72722.1| probable ethanolamine utilization protein EutN [Rhodopirellula
baltica SH 1]
Length = 130
Score = 62.4 bits (150), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVE-RQLNEH-----QSDPALLIVADCIGAGEGDQ 54
MF+ +V GS+ T+K ++ G K L+VE +L+E S I D +GAGEG+
Sbjct: 29 MFLARVTGSVVCTQKVASMTGHKLLIVEPYRLDEKTRAKLSSTGRTFIAVDTLGAGEGEL 88
Query: 55 VMVTTGSSARMSLNKVNIPVDMVVVAIIDKVDYHSDE 91
V+V GSSAR++ +P+D VV+ ++D V + E
Sbjct: 89 VLVCQGSSARLTPETKTLPIDAVVIGLVDSVHVDAKE 125
>gi|111075055|gb|ABH04899.1| ethanolamine utilization protein eutN [Heliobacillus mobilis]
Length = 96
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M++G V G++ AT KD +L G K L+++ + S P L + D +GAG G++V+V G
Sbjct: 1 MWIGTVVGNVVATSKDPSLVGSKLLIIKPLSSSGVSRPGLHVAVDTVGAGNGERVLVLQG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
+SAR+ L N VD +V IID ++
Sbjct: 61 ASARLILPNKNSAVDAAIVGIIDSME 86
>gi|119509596|ref|ZP_01628743.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Nodularia spumigena CCY9414]
gi|119465785|gb|EAW46675.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Nodularia spumigena CCY9414]
Length = 100
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV+G++ T+KD +L G+K L+++ E P+ + AD +GAG + V+VT G
Sbjct: 1 MQIAKVRGTVVGTQKDPSLRGVKLLLLQLVDEEGNLLPSYEVAADTVGAGVDEWVLVTRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD------YHSDEEY 93
S+AR L P+D VVAIID + Y E+Y
Sbjct: 61 SAARQILGNEQRPLDAAVVAIIDTIHLENRLMYSKKEQY 99
>gi|150392256|ref|YP_001322305.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Alkaliphilus metalliredigens QYMF]
gi|149952118|gb|ABR50646.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Alkaliphilus metalliredigens QYMF]
Length = 90
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G++ G++ AT KDE L G K ++ + + L+ D IGAG G+ V+ G
Sbjct: 1 MHIGRIIGTVVATPKDERLMGCKLMLTQPLNIDKNPVGEPLVAVDTIGAGIGEIVLYARG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSD 90
++AR + N++ P+D +V IID +D D
Sbjct: 61 TAARYAANRLQSPIDASIVGIIDHIDIPGD 90
>gi|116619464|ref|YP_821620.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Solibacter usitatus Ellin6076]
gi|116222626|gb|ABJ81335.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Solibacter usitatus Ellin6076]
Length = 111
Score = 58.9 bits (141), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M+ G+V GS+WAT K + G + LVV+ E ++ LI D IGAG G+ V G
Sbjct: 1 MYFGRVVGSVWATIKSPQMVGQRMLVVQPLTPELKNTGKPLICTDSIGAGAGELVYWVRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
A + P+D VV I+D+V
Sbjct: 61 KEASFPFSPQEPPIDTTVVGIVDEV 85
>gi|153953483|ref|YP_001394248.1| Predicted microcompartment shellprotein [Clostridium kluyveri DSM
555]
gi|146346364|gb|EDK32900.1| Predicted microcompartment shellprotein [Clostridium kluyveri DSM
555]
Length = 93
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVER---QLNEHQSDPALLIVADCIGAGEGDQVMV 57
MF+ KV G++ +T+K E L G K L+V++ + N Q++P ++ D +GAG + V+V
Sbjct: 1 MFLAKVVGNVVSTQKHEKLIGNKLLIVKKLDEKENIIQTEP--MVAIDTVGAGINEIVIV 58
Query: 58 TTGSSARMSLNKVNIPVDMVVVAIIDKVDYH 88
TGS AR + N ++IP D +V I+D V+++
Sbjct: 59 VTGSGARKASNTIDIPTDASIVGIVDSVEWN 89
>gi|78045187|ref|YP_359543.1| ethanolamine utilization protein EutN [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997302|gb|ABB16201.1| ethanolamine utilization protein EutN [Carboxydothermus
hydrogenoformans Z-2901]
Length = 90
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +GKV G++ ATRKDE L G K L+ + + D +GAG G+ V+ TG
Sbjct: 1 MLLGKVIGNVVATRKDETLVGTKMLITLPVDLDGNPAGQPFVAVDTVGAGVGELVLYVTG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYH 88
S A ++ + +P+D ++ I+DK+++
Sbjct: 61 SVAPFAVRRGEVPIDAAIIGIVDKLEWQ 88
>gi|2331051|gb|AAB66836.1| carbon dioxide concentrating mechanism protein [Synechococcus sp.
PCC 7002]
Length = 99
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV+G++ +T K E+L G+KFL+V+ + Q P + D +GAG + V+V+ G
Sbjct: 1 MQIAKVRGTVVSTYKAESLRGIKFLLVQFIDEQGQPLPKYEVAGDLVGAGVNEWVLVSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY 93
+AR P+D +V+ IID V+ + Y
Sbjct: 61 GAARTETGMEGRPLDAMVIGIIDTVNVDNRSLY 93
>gi|56750143|ref|YP_170844.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus elongatus PCC 6301]
gi|81300231|ref|YP_400439.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus elongatus PCC 7942]
gi|416774|sp|Q03512|CCML_SYNP7 Carbon dioxide concentrating mechanism protein ccmL
gi|154499|gb|AAA27305.1| carbon dioxide concentrating mechanism protein
gi|56685102|dbj|BAD78324.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus elongatus PCC 6301]
gi|81169112|gb|ABB57452.1| carbon dioxide concentrating mechanism protein CcmL
[Synechococcus elongatus PCC 7942]
Length = 99
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV+G++ +T K+ +L G+KFLVV+ Q+ + AD +GAG + V+++ G
Sbjct: 1 MRIAKVRGTVVSTYKEPSLQGVKFLVVQFLDEAGQALQEYEVAADMVGAGVDEWVLISRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY 93
S AR + PVD V+AIID V+ + Y
Sbjct: 61 SQARHVRDCQERPVDAAVIAIIDTVNVENRSVY 93
>gi|23128654|ref|ZP_00110494.1| COG4576: Carbon dioxide concentrating mechanism/carboxysome shell
protein [Nostoc punctiforme PCC 73102]
Length = 100
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M V KV+G++ +T+KD +L G+K L+++ + P + AD +GAG + V+V+ G
Sbjct: 1 MQVAKVRGTVVSTQKDPSLRGVKLLLLQFVDEDGNILPQYEVAADSVGAGVDEWVLVSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
S AR + P+D VVVAIID +
Sbjct: 61 SVARQVIGNEQRPLDAVVVAIIDTI 85
>gi|90422684|ref|YP_531054.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Rhodopseudomonas palustris BisB18]
gi|90104698|gb|ABD86735.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Rhodopseudomonas palustris BisB18]
Length = 88
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M++GKV G++ +T K E+L G K L+V R + I D +GAG G+ V+VT G
Sbjct: 1 MYLGKVIGTVVSTSKSESLLGTKLLIVTRLSETLAVIGPVAIAVDTVGAGNGEIVIVTCG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+AR + K +D +V I+D V+
Sbjct: 61 SAARRTAGKEQSVIDAAIVGIVDTVE 86
>gi|126657857|ref|ZP_01729010.1| carbon dioxide concentrating mechanism protein; CcmL [Cyanothece
sp. CCY0110]
gi|126620797|gb|EAZ91513.1| carbon dioxide concentrating mechanism protein; CcmL [Cyanothece
sp. CCY0110]
Length = 99
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV+G++ +T K +L G KFL+V+ + + P + D +GAG + V+V+ G
Sbjct: 1 MQIAKVRGTVVSTYKTRSLTGTKFLLVQFMDAQGEPIPKYEVAGDLVGAGINEWVLVSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY 93
S+AR+ P+D +VV IID V ++ Y
Sbjct: 61 SAARIDDGMERRPLDALVVGIIDTVTVENNRLY 93
>gi|120554160|ref|YP_958511.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Marinobacter aquaeolei VT8]
gi|120324009|gb|ABM18324.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Marinobacter aquaeolei VT8]
Length = 101
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV G + AT + E L K +++ + + ++++ AD +GAGEG+ V+V +G
Sbjct: 1 MRLAKVIGQVVATVRSERLGMDKLALIKFIDQDGNEESSVMVAADRLGAGEGEWVLVVSG 60
Query: 61 SSARMSLNKV-NIPVDMVVVAIIDKV 85
SSARMS++ PVD+ +V IID+V
Sbjct: 61 SSARMSVDGTGQTPVDLSIVGIIDEV 86
>gi|67920778|ref|ZP_00514297.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Crocosphaera watsonii WH 8501]
gi|67856895|gb|EAM52135.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Crocosphaera watsonii WH 8501]
Length = 101
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV+G++ +T K +L G KFL+++ + Q P + D +GAG + V+V+ G
Sbjct: 1 MQIAKVRGTVVSTYKTRSLTGTKFLLLQFMDAQGQPLPNYEVAGDLVGAGINEWVLVSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVDYHSDEEY 93
S+AR+ + P+D +VV IID V + Y
Sbjct: 61 SAARVDDGMEHRPLDALVVGIIDTVTVENSRLY 93
>gi|37521663|ref|NP_925040.1| carbon dioxide concentrating mechanism protein [Gloeobacter
violaceus PCC 7421]
gi|35212661|dbj|BAC90035.1| carbon dioxide concentrating mechanism protein [Gloeobacter
violaceus PCC 7421]
Length = 100
Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M +G+V+G++ +++K+ ++ G+KFL+++ Q P + AD +GAG + V+ + G
Sbjct: 1 MQIGRVRGTVVSSQKEPSMVGVKFLLLQLIDEAGQPLPQYEVAADGVGAGLDEWVLFSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
S+AR PVD VV+ IID V
Sbjct: 61 SAARQVAGSEKRPVDAVVIGIIDTV 85
>gi|113477304|ref|YP_723365.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Trichodesmium erythraeum IMS101]
gi|110168352|gb|ABG52892.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Trichodesmium erythraeum IMS101]
Length = 100
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + KV+G++ +T+K+ NL G K L+++ E P + AD +GAG + V+V+ G
Sbjct: 1 MQIAKVRGTVVSTQKEPNLKGTKLLLLQFIDEEGHLLPKYEVAADNVGAGINEWVLVSRG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
+AR +PVD VVAIID +
Sbjct: 61 GAAREIPGSEKLPVDARVVAIIDTI 85
>gi|150018867|ref|YP_001311121.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium beijerinckii NCIMB 8052]
gi|149905332|gb|ABR36165.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Clostridium beijerinckii NCIMB 8052]
Length = 85
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M++ KV G++ ATRKD++L G K ++V+R + + AD +GAG GD V++ G
Sbjct: 1 MYMAKVVGNVVATRKDDSLVGYKLMIVKRIDVKENFIGNEEVAADYVGAGIGDYVLLCKG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+ R+ KV I DM ++ IID +D
Sbjct: 61 SAVRVEKQKVAI--DMAIIGIIDTID 84
>gi|77977303|ref|ZP_00832755.1| COG4576: Carbon dioxide concentrating mechanism/carboxysome shell
protein [Yersinia intermedia ATCC 29909]
Length = 91
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALL----IVADCIGAGEGDQVM 56
M + +V GS+ +T+K L G K L+V R + P + D +GAG+GD V+
Sbjct: 1 MQLARVVGSVVSTQKSPTLIGRKLLLVRRVAGDGSLPPDSKTPDEVAVDSVGAGQGDLVL 60
Query: 57 VTTGSSARMSLNKVNIPVDMVVVAIIDKVDY 87
++ GSSAR ++ N +D+ +VAI+D+ Y
Sbjct: 61 LSGGSSARRVFSEPNDAIDLAIVAIVDECSY 91
>gi|120597251|ref|YP_961825.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Shewanella sp. W3-18-1]
gi|120557344|gb|ABM23271.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Shewanella sp. W3-18-1]
Length = 92
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDP-----ALLIVADCIGAGEGDQV 55
M + KV GS+ +T+K +L G K +VV +N S P L + D +GAGEG+ V
Sbjct: 1 MQLAKVVGSVVSTQKSASLTGKKLMVVTL-VNLDGSTPLFQENTLEVAVDSMGAGEGELV 59
Query: 56 MVTTGSSARMSLNKVNIPVDMVVVAIIDKVD 86
+V+ GSSAR + N +D+ +V I+D +D
Sbjct: 60 LVSRGSSARKIFPEPNQAIDLAIVGIVDTID 90
>gi|116619463|ref|YP_821619.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Solibacter usitatus Ellin6076]
gi|116222625|gb|ABJ81334.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Solibacter usitatus Ellin6076]
Length = 88
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + +V G++ ATRKD L G K L+++ + + + ++ D + AG ++V+ +G
Sbjct: 1 MILARVVGTVVATRKDPRLEGKKLLILKPISPDGKDESGYVVSVDTVSAGFRERVIAVSG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKV 85
SSARM+ + PVD ++ I+D+V
Sbjct: 61 SSARMAEGCKDTPVDNAIIGIVDEV 85
>gi|116872537|ref|YP_849318.1| ethanolamine and carbon dioxide metabolism [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741415|emb|CAK20539.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 87
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 53/86 (61%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF+ K+ GS+ +T+K+++L G K ++V+ ++ + + D +GAG G+ V+V G
Sbjct: 1 MFMAKITGSVVSTKKEDSLTGKKIMIVQPVDANGENVRSEEVACDSVGAGIGEYVLVARG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
++AR ++ N +D ++AI+D D
Sbjct: 61 NAARSVFSEPNSAIDSAIIAIVDSFD 86
>gi|118443223|ref|YP_878958.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml, putative [Clostridium novyi NT]
gi|118133679|gb|ABK60723.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml, putative [Clostridium novyi NT]
Length = 92
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQS---DPALLIVADCIGAGEGDQVMV 57
MF+ KV G++ +T+K+E L G K L+V + ++++ S + +++ D GAG+G+ V+V
Sbjct: 1 MFIAKVVGNVVSTQKNEKLIGTKLLLV-KPIDDNGSTIKNGEVIVAVDTAGAGKGELVLV 59
Query: 58 TTGSSARMSLNKVNIPVDMVVVAIIDKVD 86
GS+AR + IP D +V I+D ++
Sbjct: 60 AKGSAARHVYDNKTIPSDAAIVGIVDSIE 88
>gi|47095004|ref|ZP_00232617.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes str. 1/2a F6854]
gi|153174231|ref|ZP_01929770.1| propanediol utilization, polyhedral bodies [Listeria
monocytogenes FSL N3-165]
gi|153179251|ref|ZP_01932470.1| propanediol utilization, polyhedral bodies [Listeria
monocytogenes F6900]
gi|153184674|ref|ZP_01935401.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes J0161]
gi|153190546|ref|ZP_01937935.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes J2818]
gi|47016622|gb|EAL07542.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes str. 1/2a F6854]
gi|126942645|gb|EBA20382.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes J0161]
gi|127765928|gb|EBA26272.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes J2818]
gi|133730429|gb|EBA32127.1| propanediol utilization, polyhedral bodies [Listeria
monocytogenes FSL N3-165]
gi|133732736|gb|EBA34434.1| propanediol utilization, polyhedral bodies [Listeria
monocytogenes F6900]
Length = 96
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 52/86 (60%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF+ K+ GS+ +T+K+++L G K ++V+ ++ + + D +GAG G+ V+V G
Sbjct: 10 MFMAKITGSVVSTKKEDSLTGKKLMIVQPVDANGENVRSEEVACDSVGAGIGEYVLVARG 69
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
++AR + N +D ++AI+D D
Sbjct: 70 NAARSVFAEPNSAIDSAIIAIVDSFD 95
>gi|119718255|ref|YP_925220.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Nocardioides sp. JS614]
gi|119538916|gb|ABL83533.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Nocardioides sp. JS614]
Length = 96
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
M + +V GS +T KD +L G K L+V+ ++ + D +GAG G+ V+V+ G
Sbjct: 1 MRIARVVGSAVSTVKDPSLVGHKLLLVQETDASSAVTGSVFVAIDVVGAGSGELVLVSEG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
S+AR S PVD V++ I+D ++
Sbjct: 61 SAARHSATTTGQPVDAVIMGILDSLE 86
>gi|47091963|ref|ZP_00229757.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes str. 4b H7858]
gi|153166504|ref|ZP_01927061.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes FSL N1-017]
gi|153195938|ref|ZP_01940346.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes 10403S]
gi|153201874|ref|ZP_01943631.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes HPB2262]
gi|47019679|gb|EAL10418.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes str. 4b H7858]
gi|127634220|gb|EBA23606.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes 10403S]
gi|133727548|gb|EBA29246.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes FSL N1-017]
gi|133735663|gb|EBA37361.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes HPB2262]
Length = 96
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF+ K+ GS+ +T+K+++L G K ++V+ + + + D +GAG G+ V+V G
Sbjct: 10 MFMAKITGSVVSTKKEDSLTGKKLMIVQPVDANGEHVRSEEVACDSVGAGIGEYVLVARG 69
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
++AR + N +D ++AI+D D
Sbjct: 70 NAARSVFAEPNSAIDSAIIAIVDSFD 95
>gi|16803203|ref|NP_464688.1| hypothetical protein lmo1163 [Listeria monocytogenes EGD-e]
gi|46907381|ref|YP_013770.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes str. 4b F2365]
gi|16410579|emb|CAC99241.1| lmo1163 [Listeria monocytogenes]
gi|46880648|gb|AAT03947.1| propanediol utilization: polyhedral bodies [Listeria
monocytogenes str. 4b F2365]
Length = 87
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF+ K+ GS+ +T+K+++L G K ++V+ + + + D +GAG G+ V+V G
Sbjct: 1 MFMAKITGSVVSTKKEDSLTGKKLMIVQPVDANGEHVRSEEVACDSVGAGIGEYVLVARG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
++AR + N +D ++AI+D D
Sbjct: 61 NAARSVFAEPNSAIDSAIIAIVDSFD 86
>gi|16800196|ref|NP_470464.1| hypothetical protein lin1127 [Listeria innocua Clip11262]
gi|16413586|emb|CAC96358.1| lin1127 [Listeria innocua]
Length = 87
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALLIVADCIGAGEGDQVMVTTG 60
MF+ K+ GS+ +T+K+++L G K ++V+ + + + D +GAG G+ V+V G
Sbjct: 1 MFMAKITGSVVSTKKEDSLTGKKLMIVQPIDANGEHVRSEEVACDSVGAGIGEYVLVARG 60
Query: 61 SSARMSLNKVNIPVDMVVVAIIDKVD 86
++AR + N +D ++AI+D D
Sbjct: 61 NAARSVFAEPNSAIDSAIIAIVDSFD 86
>gi|146291312|ref|YP_001181736.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Shewanella putrefaciens CN-32]
gi|145563002|gb|ABP73937.1| Ethanolamine utilization protein EutN/carboxysome structural
protein Ccml [Shewanella putrefaciens CN-32]
Length = 92
Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 1 MFVGKVKGSLWATRKDENLNGLKFLVVERQLNEHQSDPALL-----IVADCIGAGEGDQV 55
M + KV GS+ +T+K +L G K +VV +N S P + D +GAGEG+ V
Sbjct: 1 MQLAKVVGSVVSTQKSASLTGKKLMVVTL-VNLDGSTPLFQENTQEVAVDSMGAGEGELV 59
Query: 56 MVTTGSSARMSLNKVNIPVDMVVVAIIDKVD 86
+V+ GSSAR + N +D+ +V I+D +D
Sbjct: 60 LVSRGSSARKIFPEPNQAIDLAIVGIVDTID 90
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,531,558
Number of Sequences: 5470121
Number of extensions: 10624138
Number of successful extensions: 24347
Number of sequences better than 1.0e-05: 80
Number of HSP's better than 0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 24261
Number of HSP's gapped (non-prelim): 80
length of query: 93
length of database: 1,894,087,724
effective HSP length: 63
effective length of query: 30
effective length of database: 1,549,470,101
effective search space: 46484103030
effective search space used: 46484103030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)