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Preface v Chapter 1. Validated High Quality Automated Metabolome Analysis of Arabidopsis Thaliana Leaf Disks Quality Control Charts and Stadard Operating Procedures 1 Oliver Fiehn Chapter 2. GC-MS Peak Labeling Under ArMet 19 Helen Jenkins, Manfred Beckmann, John Draper, and Nigel Hardy Chapter 3. Metabolomics and Plant Quantitative Trait Locus Analysis - The Optimum Genetical Genomics Platform? 29 Daniel . Kliebenstein Chapter 4. Design of Metabolite Recovery by Variations of the Metabolite Profiling Protocol 45 Claudia Birkemeyer and Joachim Kopka Chapter 5. Uncovering the Plant Metabolome: Current and Future Challenges 71 Ute Roessner-Tunali Chapter 6. Lipidomics: ESI-MS/MS-Based Profiling to Determine the Function of Genes Involved in Metabolism of Complex Lipids 87 Ruth Welti, Mary R. Roth, Youping Deng, Jyoti Shah, and Xuemin Wang Chapter 7. Time-Series Integrated Metabolomic and Transcriptional Profiling Analyses Short-Term Response of Arabidopsis Thaliana Primary Metabolism to Elevated CO2 - Case Study 93 H. Kanani, B. Dutta, J. Quackenbush, and MI. Klapa Chapter 8. Metabolomics of Cuticular Waxes: A System for Metabolomics Analysis of a Single Tissue-Type in a Multicellular Organism 111 M Ann D.N. Perera and Basil J Nikolau Chapter 9. Metabolic Flux Maps of Central Carbon Metabolism in Plant Systems Isotope Labeling Analysis 125 V V. yer, G. Sriram, and J V Shanks Chapter 10. MetNet: Systems Biology Tools for Arabidopsis 145 Eve Syrkin Wurtee, Ling Li, Dan Berleant, Dianne Cook, Julie A. Dickerson, Jing Ding, Heike Hofmann, Michael Lawrence, Eun-kyung Lee, Jie Li, Wieslawa Mentzen, Leslie Miller, Basil J Nikolau, Nick Ransom, and Yingjun Wang Chapter 11. Identification of Genes Involved in Anthocyanin Accumulation by Integrated Analysis of Metabolome and Transcriptome in Papl-Overexpressing Arabidopsis Plants 159 Takayuki Tohge Yasutaka Nishiyama, Masami Yokota Hirai, Mitsuru Yano, Jun-ichiro Nakajima, Motoko Awazuhara, Eri Inoue, Hideki Takahashi, Dayan B. Goodenowe, Masahiko Kitayama, Masaaki Noji, Mami Yamazaki, and Kazuki Saito Chapter 12. Identifying Substrates and Products of Enzymes of Plant Volatile Biosynthesis with the Help of Metabolic Profiling 169 Dorothea Tholl, Feng Chen, Yoko lijima, Eyal Fridman, David R. Gang, Efraim Lewinsohn, and Eran Pichersky Chapter 13. Profiling Diurnal Changes in Metabolite and Transcript Levels in Potato Leaves 183 Ewa Urbanczyk-Wochniak, Charles Baxter, Lee J. Sweetlove, and Alisdair R. Fernie Chapter 14. Gene Expressio and Metabolic Analysis Reveal that the Phytotoxin Coronatine Impacts Multiple Phytohormone Pathways in Tomato 193 Srinivasa Rao Uppalapati and Carol L. Bender Chapter 15. Profiling of Metabolites and Volatile Flavour Compounds from Solanum Species Using Gas Chromatography-Mass Spectrometry 209 Tom Shepherd Gary Dobson, Rhoda Marshall Susan R. Verrall, Sean Conner, D. Wynne Griffiths, Derek Stewart, and Howard V. Davies Chapter 16. Metabolomic Analysis of Low Phytic Acid Maize Kernels 221 Jan Hazebroek Teresa Harp Jinrui Shi, and Hongyu Wang Chapter 17. The Low Temperature Metabolome of Arabidopsis 239 Gordon R. Gray and Doug Heath Chapter 18. Cloning, Expression and Characterization of a Putative Flavonoid Glucosyltransferase from Grapefruit (Citrus Paradisi) Leaves 247 Tapasree Roy Sarkar, Christy L Strong, Mebrahtu B. Sibhatu, Lee M. Pike, and Cecilia A. Mcntosh Chapter 19. Application of Metabolite and Flavour Volatile Profiling to Studies of Biodiversity in Solanum Species 259 Gary Dobson, Tom Shepherd, Rhoda Marshall, Susan R. Verrall, Scan Conner, . Wvnne Griffiths, James W McNicol, Derek Stewart, and Howard V Davies Chapter 20. Metabolic Profiling Horizonta Resistance in Potato Leaves (cvs. Caesar and AC Novachip) Against Phytophthora Infestans 269 Y Abu-Nada, A. C Kushalappa, WD. Marshall S.O. Prasher, and K. Al-Mughrabi Chapter 21. In Vivo 1N-Enrichment of Metabolites in Arabidopsis Cultured Cell T87 and Its Application to Metabolomies 287 Kazuo Harada, Ei-ichiro Fukusaki, Takeshi Bamba, and Akio Kobayashi