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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs6426215          
refSNP ID: rs6426215
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/C
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_033213.2:c.4-14124G>T
NT_004836.17:g.11974752C>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss9811872 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6426215 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss9811872BCM_SSAHASNP|chr1.NT_004536.14_1216515byFreqfwd/TA/Cgtctcaaaaaacaaaaaacaaacaaacaaaaaaaatggcaggatcacatggtctctttgc06/27/0310/25/06116Genomicunknown
ss11344803WI_SSAHASNP|chr1.NT_004536.14_1216515fwd/TA/Cgtctcaaaaaacaaaaaacaaacaaacaaaaaaaatggcaggatcacatggtctctttgc07/03/0310/10/03116Genomicunknown
ss13457728WI_SSAHASNP|chr1.NT_004836.15_11880327fwd/TA/Cgtctcaaaaaacaaaaaacaaacaaacaaaaaaaatggcaggatcacatggtctctttgc10/31/0310/25/06123Genomicunknown
ss13541018BCM_SSAHASNP|chr1.NT_004836.15_11880327fwd/TA/Cgtctcaaaaaacaaaaaacaaacaaacaaaaaaaatggcaggatcacatggtctctttgc11/05/0311/22/03123Genomicunknown
ss78228090HGSV|Cor12878_SNV_20070510.chr1_243543004fwd/TA/Cgtctcaaaaaacaaaaaacaaacaaacaaaaaaaatggcaggatcacatggtctctttgc10/17/0710/18/07129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6426215|allelePos=9549|totalLen=14043|taxid=9606|snpclass=1|alleles='A/C'|mol=Genomic|build=129
 GAACTATGTA TGTGTCTTAA TGCTCAAAGT AAATTTTCCT TTGCTTGAGA AATAATTTAT
 GTTGAAAAGA TTTCCTGAGA CCACCAAAGG AGACTGTCAA GGTTCACGGA AGGAGCAATA
 AAAGGAGAAA TAATTGGAAA AAAAAAACCC CAAAAAACAA AGGCAACATT CAggctatta
 ttagagtctt taacagatgg tggcaaagta gcgcagaaaa tggagcactt acacactgct
 ggtgggaatg taaattagtt cagccattgt gaaaagcagt ttgaagattt ctcaaaaaac
 ttaaaacaga actacctttt gacccagcaa tcccattact ggatacacac ccaaaggaat
 ataagttgtt ctaccaagaa gacacatgta cctgtatgtt catcacagca ctattcacaa
 tatcaaagac acggaatcaa tccaaatgcc catcaatagt ggactggatt ttttaaaaag
 tggtacatat acaccatgga atactatgca gctataagaa attaaatcat gtcctgtgca
 taaacatggc cacagctgga ggccattatc ataagcaaat taatgcattg acagaaaacc
 aaataccaca tgttctcatt tataaatgga agctaactgt tgagtataca tggacacaaa
 gatgggagca acagacactg gggcctacct gagggggaga atgggaggaa agtgagagtc
 aaaaaactac ctatcaggca ctatgctcac tatctatgtg acaaaatcat ttatgcagca
 aaacacagaa acatgaaatt tactcatgta acaaatctgc atatgtaccc cccagaacac
 aaaagttaaa aaaaaaaaGC AACATTCACA TTCacaataa aaggcaaata aatttaacta
 aacaattcta agattaacca ttaaagaact gagttcccag taaaaactac caaaccaaat
 tagagagaca gagaggcaca tccagagaat cgtaactcac ttgatgagaa aaccataaga
 atcctctaag agtagcagta cgtgtatagg aaaaaccaaa ctgaaattgg tgagctgctc
 aagtttgaga acatctcctg ggtgcccagg cttagggatc cccagtaatt tatgagtttt
 acatccacaa acattaccag Ttgatacggt ttggctgtgt gtttcctcca aatctcatgt
 ttaaatgtga cctccaatgt tggaggtggg cctaggggaa ggcatctggg tcatggaggc
 agatatctca taaatgactc agtgctgtcc ttgaagtaat gagttctctg ttggttcaca
 ggagagccgg gtatttaaga ggctggacct tcctcctcct ctctctgact ccctctctca
 ccatgtggct tgcctgttcc ccctctgcct tccgtctgag gcatcaccag aagccaagca
 gctgccggtg ccatgcttgt acagcctgca gaaccgtgag tcaaataaac ctactttctt
 tataaactac ccagtcttag gtattacttt atatcaatgg aaaaatggaa taatacaTaa
 aattggcact gaggagtggg gtgttgctat aaagatacct gaaaatgtga aagcagcttt
 ggaactgggt aacatgcaga agctggaaga ctttcaaggg ctcagaaaaa gacagggaga
 tgaggaaaat tagaactttt tagagagtgg ttaagtgatt gaaaccaaaa tgttgacaga
 aatatggaca gtgaaagcca ggccaatgag gtcttagatg gaaatgacaa agttttggtg
 agcttgagca aaggtcaccc atgttacacc ctggcaaaga cttggctgca ttgtgtccaa
 tgccctaagg atttgtagga ggtttaattt aggagtaata acttaagagt ctccagagga
 agacatttct aagcagcaaa ggattcaaga ggtggtatgg tcgcttcttt gcccccacaa
 tcagaagtga tttaaagttg aaacatgatt aaaagagaag cagagcataa aagtttggaa
 aatgtgcaac ctggccctgt ggtaaagagg gaatccaagc agcctgtgga gcaatgactt
 gtaagagaga gttgcacaac taaaggggag ccaggtgcca acagccatga ggctaagaaa
 aagacctgta atgcatttca gaaaactgtg gcagcccctc tcaccacagg ctcaggggcc
 taaaaggaaa aagtttgggg taccaggtcg aaagcatcac tgccctgtgc agcctcagga
 cactgctcct tgcattccag tagctctggt tccagctttg gctaaaaagg caccatatac
 cacttgggcc acggttccag agggcacaag ccataagcct tggaggcttc cgcttagtgt
 taagcctgca ggtgcataga atacaagagt taaggaagct tggtagcttc cacctaaatt
 tcagatgtat caggaatgta ggtgcccagg cagaagcctg acatgagtgg aaccccacag
 gcagcctcta ctagggcagt gccaagagaa atgtgaggat gaagccccca cacagagtcc
 ccacagtggc actgcctagc ggagctgtgg aaacagggct gctgctttcc agaccccaga
 atggtacagc cacaagcaga aagcactgtg agcctggaaa cgttgcaagc atttgactct
 agtatgtcag aagtcacatg ggctgcatcc agcaaagcca caggaatgag gttgcccaag
 gcaacaggta aatacaccgg ttccaaatgg aagaaatggc caaaacaaag gggctacagg
 ccccatgcaa gtccaaaatc cagcagggca ataaaatctt aatgctccaa aatgatcgcc
 tttgactcca tgtctcacat ccaggtcctg ctgatgcaag aagtggactc tcatggcctt
 gggcagctcc acccctatgg ctttgcaggg tacagcccca ttcctggctg ctttcacaag
 gtggcattgt ctgtgacttt tccaggtaca cactgtaagc tgtcagtgga tctaccattc
 tgggtctgca ggatggtggc tctcttctca cagctccact aggcagtgcc tcaatgggag
 ctttgtgtgg gaattccaac cccacatttc ccttccacac tgccctagca tagattccct
 atgtgggcta caccactgca gcaaacttct gcctagacat ccgtgtattt ccatacatcc
 tctggaattg tggcagaggt tcccaaacct caattcttaa cttggctttg tgtggggatt
 ccaaccccac atttcccttc cacactgcct tagcatagat tctctatgtg ggctacacca
 ctgcagcaaa cttctgccta gacgtccatg tatttccata catcctctga aattgtggca
 gaggttccca aacctcaatt cttaacttgg ctttgtgtgg ggattccaat cccacatttc
 ccttccacac tgccttagca taggttctcc atgtgggcta ggccactgca gcaaacttct
 gcctagacgt ccgggcattt ccacacatcc tctgaaatcg tggcaaaggt tcccaaacct
 taattcttaa agttttctgt acccacaggc ccaacaccaa gtaaaggctg ccaagacttg
 gggcttgaac cctctgaagc aatggcctga gctgtacatt ggtctctttt agccacagct
 aggacacagc accatgtccc aagactacaa aaagcagcaa ggccctgggt cccggatcat
 gaaaccattt ttttctccta tgcctccaag cctgtgatgg gagggactgc cgtgaagacc
 tctgacatgt cctaaagaca ttttccccat tgtcttggca attaacattt ggctcctcat
 tacttacata aatttctgca gctggcttaa atttttcctc agaaaatggg ttttcttttc
 tatcacatca tcaggctgaa aattttccaa acgtttatgc tctgcttctc ttttaaacat
 aagtttcaat tacagaccac ctttttttga atgcataaaa ctgaatgctt ttaagagcac
 ccaagtcacc tcttgaatgc tttgctcttt agaaatttcc tctcccagat accctaaatc
 atctctctca atttcaaagt tctgcagatc tctagggcag gggcaaaatg ctgccagtct
 ctttgctaaa gtatagcaag agtcaccttt gcttcagttc ccaagaagat cctcatttcc
 atctgaaacc acctcagcct ggacttaact gtctatatca ctatcagcat tttggtcaaa
 gccatttaac aagtctctag aaagttccaa acttacccac atcttcctgt ctccttctga
 gccctccaaa ctgttccaac ctctgcctgt tacccagttc caaagtaact tccacatatt
 caggtatctt tatagcacca ccccactctc tacagtacca acttactgta ttagtccatt
 ctcacattgc tataagaaaa tacctgagac tgagtaattt gtaagggaaa gaggtttaat
 tgactgacag ttccacatgg ctggggaggc ctcaggaaat acaatcatgg caggaggcga
 aggggaagca aggcaccttc ttcacatggt ggtaggaaga agaatgactg aaggagaaac
 ttgccaaaca ctcatcaaac catcagattt cgtgagaaca attacttcca cctggtctct
 caattcaagg tgagacattg ggtggggaca cagtcaaatc atatcaCCAT Ctcaatgccg
 ctccttgtta ttggtctgtt tagagtttct atttatttct tatttaatct aggagagttt
 cataattcca ggaattcata aatctcctct aggttttcta gtttgtgcac ataaagttgt
 tgaaagtagc cttagtaatc ttttgtattt ctgttgtatt gtttgtaata cctcctgttt
 catttctttt tttttttttt ttttgagatg gagtctcact ctgtcatcca ggctggagtg
 cagtggtgca atctcagctc actgcaacct ccacctgccg ggttaagtga ttcccctgcc
 tcagcctctt gagtacctgg aattacagga atgtgtcacc atgcccagct aatttttgta
 tttttagctg gtctcaaact cctgacctca cgacctgccc acctcggctt cccaaagtgc
 tgggattaca ggcatgagcc accatgcctg gccctcctgt ttcatttcta attgagctta
 tttagatttt ctctcttctt ttcttggtta atctcactaa tggtatatca attttgttta
 tcttttcaaa gaaccagctt tttgtttcat ttatcttttg tattttttgt ttgtttcaat
 ttcatttagt tttgctctga tctttgttag ttcttttatt ctgctgggtt tggatttggt
 ttgctattgt tcctctagtt ctttcaggtg tgaccttaga tggtctattt gtactcgttc
 agacttttta atgtaggcat ttaatgatac aaacttttgt cttagcacta cctttgctgt
 atctcagagg ttttgatagg ttgtgtcact actatcattc tgttcaaaaa gtgtttaaac
 ttctatcttg atttcattgt tgacccaaca gtcagtcatt caggagcaga ttatttaatt
 tccatgtatt tgcatggttt tgagtgttcc ttttggagtt gatttccaat tatactccat
 tgtggtctaa gagtgtactt gatatgattt tgattttctt aaatttattg agacttgttt
 tgtggcctat catatggtgt atcttcaaga atgttccatg tgctgatgaa cagaatgcat
 acactgcaat tgttgagtag aatattctgt aaatatctgt taagtccatc tgttctatga
 tatagtcaag accattgatt tttttgttgg ctttctgtct tgacctgtct agtgctgtca
 gtggagtatt gaagtccccc actgttattg tgttgccatc tatctcattt ttaggtctag
 tagtaattat tctataaatt tggaagctcc agtgttaagt gcatatggac ttaagactgt
 gatattttcc tgttggacta gtctttttat cattacataa tgctcctctt tctctttgtt
 aattgctatt gctttaaagt ttgttttctc tgatgtaaga atagctactc ctgctcctgc
 tcccttttgt tgtccatttg catggagtat ctttttccac ctctttacct taggtttatg
 tgagtcctta tgtgtcaggt gagtctcttg aagacagctg ataacttggt tggtgaattc
 ttttcttctt tttttttttt tgagacagag tctcactctg tcacccaggc tggagtgcag
 tggcaccatc tcagctcact gcaacctcca tctcccgggt tcaagcgatc ctcctgcctc
 agccacccga atagctggga ctacaagcat gcaccaccac gcccaactaa tttttgtatt
 tttagcagag atgaggtttc accatattgg ccaggctggt gttgaactcc tgacctcgtg
 atctgcccgc ttcggcctcc caaagtgttg ggattacagg catgagccac cgtgcccagt
 ggtgaattct tatccattct gccattttgt atcttttaag tgggggcatt tagatcattt
 acattcaacg ttagcattga gatgtaaggt acccttctat taatcatgct gcaagttgct
 gcctgaatac cttggttttt tttctttttt ttcattgtgt tattgtttta taggtcctgt
 gaggtttatg ctttaaggag gttctatttt ggtgtatttt ttgaagttct gtttcatgat
 ttagaactcc tttaggccag gtgcggtggc tcacacctgt aatcccagca ctttgggagg
 ccgaggcggg tggatcacga ggtcaggaga tcgagaccat cctggctaac atggtgaaac
 cccgtctcta ttaaaaatac aaaaaattag ccgggcgtgg tggcaagcgc ctgtagtccc
 agctacttgg gaggctaagg caggagactc cagcctgggc gacagagcga gactccgtct
 ccaagaaaaa aaaaaacaaa aaaaaaactc cttttagcag ttgttgtagt gctggtttgg
 tagtggtgag ttctcagtat ttgcttgtct gaaaataatt ttatttttcc ttcatttatg
 aagcttagtt tcactggata caaaattctt ggctgacaat tattttgttg aaggaggcta
 atgatagaac cccaatctct tttagcttgt tgggtttctg ctgaaaaatc tgctgtaatc
 tgataggttt tccttcctag gttaaatgat gcttttgcct cacagctctt cagattcttt
 ccttcttaat tttagataac ctgatgagta tgcatctagg tgattatctt tttgtgatac
 attttccagg tgttgtttga gcttcttgta tttggatgtc tagatctcta gcaaggccag
 ggaagttttc ctcaattatt tcctcaaata agaattccaa aattttagtt tactcttctt
 cctgaggaag acctattatt gctaggttca gaggctttgt tcttttttca tttttttttt
 ttttttgttt tgttgcatcg ggttaatttg aaagccttgt cttcaagctc tgaagttctt
 tcttacactt gttcacttct attgttgaaa ctttccagtg tacttcacag ttctctaagt
 gtgtcattca tttccagaag ttgtgattgt tttttattga tgatatgtgt ttggagattt
 tttcgtccat gtcctgtatt tttttttttt ttttgtaatt cccttaaagt ggtttccacc
 tttctctggt gcctccacga gtagcttaat aatcaacctt ttaaattctt ttcctggcaa
 ttcagagatt tcttcttagt ttgcatccac tgctggggag cttgtgtgat ttttgagggt
 gttaaagaac tttattttgt catattacca gaattgtttt tctggttcct tctcatttgg
 gtagactatg tcagaggaaa gatctgaggc tcaagggctg tggttcagat tcttctgtct
 cacagggtga tgccttgatg tggtgccctc cccgtttccc tagggatggg cttcctgaga
 cccagaaggc agtgactgtt atggctcttc taggtcaagc cacccattgg aggtgctgga
 ctctgggctg gtactgggga gtgtctgcaa agagtcctgt gatgtgatct cttcaggtct
 cttggcctgg ataccaatac ctgcttcatt ggatgtagca ggggagtcag gtggattctg
 tgagggtcct tgcttgtagt tttttgggtt tttttttcgg tgcattgttt ttcttgaatg
 ctaattacgc tagcaatgaa cttgtcatgt gggcagactc agaatctctg gttagccagg
 atgttacagg tggtggaatt agcagttgtt tactgctttc ttggagcagg gtcattctgt
 tatgagttgc tataatggct tgcgttggtt ggccagcagc caggaggtgg cactttcaag
 agagcatcag ctgcagtaat atagggggat atcagcttgc cctaaagtca cctgaataag
 tattcaggtt tctcaggtaa tgggtggggt catagagttc tcaaaaaagt atgtcttttg
 tctttggcta ccaaggtggg tagagaagaa ccatcagact ggggcaaggt tagatgtgtc
 tgagctcaga ctctccttgg gagaagcttg ctgaggccac tgtgggagat ggtggtgtgg
 tattcaggcc aatggagttg tttccagggg cactatggct gcctctgctg tatcatacag
 gctgccaggg aagtgggaga aagccagcag tgacaggcct cacgcagttc ccatgcagcc
 ggaaaagcca gtctcactct cacccccagc acccgagctt atatgcagga agccagtgag
 aagggctgcg atcttgcccc aggctacaag cctcctcact gagaatgcaa gtagggcttt
 taggccccac tccatcccat ctgctgtgac ttctgtccct gtatctgcac ttccctttca
 tcgaccccca gattttgccc aggaaagttc atgctcagtt gaaattatta taaagttcag
 gccggcgcgg tggctcacgc ctgtaatccc agtactttgg gaggccgagg taggtggatc
 acgaggtcag gagataagag accatcctgg ctaacatggt gaaaccccat ctttactaaa
 aaaaatacaa aaaattagcc gggcatggtg gcaggcgcct gtagtcccag ctactcagga
 cgctgaggca ggagaatggc gtgaacccgt gaggtggagc ttgcagtgag ccgagatcgt
 gccactgcac tccagcctgg gcaacacagc gagactccgt ctcaaaaaac aaaaaacaaa
 caaacaaa
 M
 aaaaaTGGCA GGATCACATG GTCTCTTTGC CAACTTGGGT CACATTCTGA GAAATAAAAC
 AGACGCTGAA AAATTTAAAA ACAAAACAAA CAAACAAAAA ACCTAGTAAC aggagagtag
 aggaagatgg ccaaatagaa ggctccatct gtcatccatg cccataggca caacaaattt
 aacaactatc tacaccaaaa aagaacattc ataagaacaa aaactcagac aagcatacct
 gcttttaact tcttatcact gaaaaaggca ctgaaaagat taggtaagag tcctgaattg
 ccaacaccac ccttcctcca ttacctggca gcagccgcat agcatagaga atctgtgtga
 ctgggaaagg tagagtacag caattgtgcc actttgcatt ggaatgtagt gctgccaaca
 ccaggcagaa ctcagctaac ttcagcagag gaaacattta gaccgtccta accagagggg
 acttgcctat cccagtggtt ggaatttgag ttctagcggg cctcaacacc aggggctaaa
 gtgctctgcg gccctaaata cacctgaaag gcagtctaag ccacaagaat ggcaactcct
 ggtgctgagc tgggctcaga ggcagaggac ttaaaaggca cacaatctac tgagatgcca
 gctggcatgg ctaagggctt ataccatccc tccttcaacc tcaaacagca cagctcatgg
 ctccaaaagg gaaccccctt ccacctgagg agaggcgagg gaagagtaaa gaggactttg
 tcttgcaact ttgataagag ctcagctcca gtaggatagg gcactgggca gggttgtgag
 gcccacattt taggccctag ttcctggagg acatttctag gcctatgctg gaccagaagg
 gaaccaaatg ccttgaaaga aagaacctag tcctgggaag acccattact agctaattta
 agatacagtg ggccctgaat aaccacaatt gatatacagg cagtaagcca cgggcctttg
 gtgacattct gagatgtgct ggcttcaagt gagacgtagc acattcccag ttgtggtgac
 aacagtgaca gactcctgtt tgagaaaagc agagtaaaaa gtaaaggaaa ctttgAGCTA
 TGCTTGTCTC AAATAATAAT AATaataatg agttataaga cagtatttgc aagccttctt
 gtaacctcaa atttaaaaac atacaatgga tacataaaat ataacaagaa agaaagtaaa
 tcataccaag ggaggaaaaa aggaaaacta gttgggcaga cagctaaaaa ctggtctttg
 gtaaaactcc tttaaagaaa ctgcctgaaa aaaatcaggc tgcaggcaca gataaggaaa
 cttgcacaaa cctccagccc aatcagataa aggaacaagg cccaacataa caacaccttt
 gtcctttgtg cctaagacat acctccagct acactgataa gggaacaaga cccaacacag
 aaacaccttt gtcctttgta taaccagcgg gcttccagga aatagtctct tcctttgtgg
 gcacgtacat ggtgggctct ggtgagcact ttcctttcct tttttagaca cactttgtgt
 gagccaagcc tctatgaatc atcacttcag tctctgattg gccccaggcc aaggtcccag
 gacaagctct cacttcaact cctgattggt cccaggccaa gcagagtagc actttcttca
 agaccagtca gcaccttcct tcccttcctg gtccataaaa atcctggagc cagcctcata
 tttggcaacc cattcagacc cccttctctg ctgcagagag ctttcttctt ccacttatta
 aactttcacc ccaatctcac cctttctata cacgctcctt aatattcttg gtcatgagac
 aacttccagt gatactgcac aactagagac tgctacattg tggtgcattg gtgagactgt
 aacaATACCA CCAGGAAAAA TCACCTTCAC TGAAtaacac tgagtttaac ggaactaaat
 tctcccatca aaagatgctg agtgcttcaa tgaatataaa aaaacaagac ccactgactg
 gctgcctaac atacttcacc tatcaagaca catacaaact gaaaacaaag ggataaaaaa
 ggatattcca tatcaataga aaccaaaaaa agaatagcta tacttatatc agatgaaata
 aatttcaaac aaaaactata aaaagagaca aagaagtcac tacataatga tatgtatgtg
 ctgatatcca attcagcaag aggatataac cattttcaat atatatgcac tcaatactga
 agcactcaga tatataaagc aaatattaat agagctaaag agagagagac cccaaaacaa
 taacagctat agacttcaac accctacttt tagcattaga caatcttaca gaccaaaaaa
 aaaaaaaaaa tcaataatga aaacactgga attactctgc actgtagacc aaatggccct
 aatagatact tacagaacat tttgtccaac agcttcagaa tacacattct tttcatcaga
 acatgaatca ttctcaagga tagaccatat ggtaggtcac aaaaaagtct ttaaaacatt
 caccagaaaa aattgaaata gtatcaagca tcttccctga ccgcaaagga ttaaaactag
 gaatcaataa caagacaact tttgtaaact ctacagatcc acggaaatta atatgctcct
 gaatgagtca tgaagaaatt taaaaggaaa ctgaaaaact tctaaaaaca aatgataatg
 gaaatacaac ataccaaaac ctgtgggata aagtgaaagc aatactaaga gggaagttta
 tagctgtaaa tacctacatc aaaaaaagag taatttcaaa caaccaccta ataacgcatc
 ttaaaaaact aaaaaaGAGG TTgagcacgg tggttcatgc ttgtaatccc agcactttgg
 gaggctgagg caggcggatc atcaggtgag gagttcgaga ccagtgaact cagttttgac
 aaaggtacca agaacacaca ctggggaaag aacaatctct tcaataaatg gtgctggaaa
 aactggatat ccacatgtag aagaataaaa ctagaccact atctctcacc atataaaaac
 aaaatcaaaa tggattaaaa acttaaatat aagttctcaa actatgaaac tactacaaga
 aagcattggg gaaactcttc aggacattga actgggcaaa gatttcttga gtaatacccc
 atgagcacag gagaccaaac caaacatgga cgaatgagat ccacatcaag ttaaaaagct
 tctgtgcagc aaaggaaaca atcaactaag tgaaaagaca acatacagaa tgcaagaaaa
 tatttgcaaa ctactcatct gacaagagat taataaacag aatacataag gatttcaaac
 aaatacagga aaaaaaattc taataatctc atccaaaaat gggcaaataa tccaatccaa
 aaatgtctca aaagaagaca tacaaatggt aaacaggtat atgaaaagat gctcagtatc
 actgatcatc agagaaatgc aaatcaaaat catgatgaga tatctcattc ccattaaaat
 ggcttttacc aggcaacaat tgctggagag gatgtagaga taagggaacc ctggtatagt
 ggttgtggaa atgtaaatta gtacaaccac tctggagaac agtttcaagg ttcctcaaaa
 agtaaaaatt gagctaccac atgatgacgg caatcccact cctaggtata tatccaaaga
 acaggagatc agtatattga aaacacatct gaactcccat gtttactgca gcacacaata
 gccaagattt ggaagcaacc aaagtgtcca tcaacagaag aatggatgaa gaaaatgtag
 cacatataca aaatgatata ctatttagcc ataaaaaaag aatgagatcc attcatttgc
 aacaacacgg atgaaactgg aagtcattgt gttaaatgaa ataagccagg aaaagagaca
 aacttcacat gttctcactt acttgtgaga actgacaatt aaaatgactg aacttatgga
 gatagaaagt agaaggatgg ttaccaaagg gtgggaacaa tagtggagga ggtggagggg
 atgtgggaat gtttaatggg tacaaaaaaa atagttagaa aaaataaaca agaccttgta
 ttttgctagc aaaacaggat gattacagtc aaatataact taattgtaca ttttaaaata
 agtaaaaggt tataaacagt ttgtaacaca aaagataaat gtttaaagtt atagataccc
 catttaccct ggtacaatta ttatgcattg catgcccgta tcaaaatatc tcatgtaact
 cataaatata tacacctagt atgtacccac aaaaattaaa aaCTAAAACA AAAT

  GeneView back to top
GeneView via analysis of contig annotation: ZNF670 zinc finger protein 670
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_004836->NM_033213
svfunction
HuRefNW_001838554->NM_033213
svfunction
CeleraNW_927572->NM_033213
svfunction
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_004836->NM_033213->NP_14999011974752reverseintron
HuRefNW_001838554->NM_033213->NP_149990417860reverseintron
CeleraNW_927572->NM_033213->NP_1499903870313reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs6426215 maps exactly once on NCBI human chromosome 1
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
1NW_001838554.1417860217611203plusCalt_assembly_8HuRefHuRefview9548
1NW_927572.13870313220513199plusCalt_assembly_1CeleraCeleraview9548
1NT_004836.1711974752245283586plusCref_assemblyreferencereferenceview9548

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_004836
dbSNP Blast Analysis
GenBank HTGS Finished:
NC_000001.9

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/C
C/C
HWPA
C
ss9811872HapMap-CEUEuropean 116IG 0.155 0.431 0.414 0.584 0.371 0.629
HapMap-HCBAsian 90IG 1.000 1.000
HapMap-JPTAsian 88IG 1.000 1.000
HapMap-YRISub-Saharan African 120IG 0.450 0.450 0.100 1.000 0.675 0.325

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.420+/-0.18427021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .