proteins
| 26 proteins |
MI | COG0615 | Cytidylyltransferase | Help | |
|---|---|---|---|---|---|
| 0 from | query genome Streptococcus pyogenes M1 GAS (Lactobacillales | Bacilli) | ||||
| |||||
152 letters (r) 0
0 664 _ ||| 1 SPy0729 (152) COG5506 0
2
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPy0729
(152 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
SPy0729 260 9e-70
SP1127 85 5e-17
BH3352 49 4e-06
lin2086 41 8e-04
BS_yueI 37 0.014
RSc2325 33 0.26
CT434 31 0.88
ECU10g1380 30 1.3
RC1324 30 2.1
YPO2108 30 2.2
lin1171 30 2.6
L19816 28 6.3
sll0776 28 8.7
# >SPy0729
# Length = 152
#
# Score = 260 bits (664), Expect = 9e-70
# Identities = 152/152 (100%), Positives = 152/152 (100%)
#
# Query: 1 MTNLEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQ 60
# MTNLEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQ
# Sbjct: 1 MTNLEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQ 60
#
# Query: 61 LVYQPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKET 120
# LVYQPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKET
# Sbjct: 61 LVYQPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKET 120
#
# Query: 121 RLEVILKQTKNDQLSKQTPEKTKSFWKRFLKK 152
# RLEVILKQTKNDQLSKQTPEKTKSFWKRFLKK
# Sbjct: 121 RLEVILKQTKNDQLSKQTPEKTKSFWKRFLKK 152
#
#
# >SP1127
# Length = 148
#
# Score = 85.1 bits (209), Expect = 5e-17
# Identities = 52/149 (34%), Positives = 88/149 (58%), Gaps = 3/149 (2%)
#
# Query: 1 MTNLEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQ 60
# MT+L +LL+ A G ++NP++QR YLGT+ ERV+ +D A + ++ L +LQ
# Sbjct: 1 MTDLSKQLLEKAHGGLKINPDEQRRYLGTFEERVLGYVDIDTANSPQLEKGFLFILENLQ 60
#
# Query: 61 LVYQPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKET 120
# +PL +KIS + Q+ Y+K AKE TI++E H+TSPF ++H++ + ++E
# Sbjct: 61 EKAEPLFVKISPTIEFDKQVFYLKEAKETDSQATIVSEEHITSPFGLVIHSNAPVQVEEK 120
#
# Query: 121 RLEVILKQTKNDQLSKQTPEKTKSFWKRF 149
# L + + ++ K+ P KT S WK++
# Sbjct: 121 DLRLAFPKLW--EVKKEEPAKT-SLWKKW 146
#
#
# >BH3352
# Length = 146
#
# Score = 48.9 bits (115), Expect = 4e-06
# Identities = 33/133 (24%), Positives = 72/133 (53%), Gaps = 7/133 (5%)
#
# Query: 4 LEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQLVY 63
# ++D L KG +G++ +NPE++R +LGT+ ER++++ L ++Q + Y +E+ L
# Sbjct: 6 VDDYLKKGIYGQKEINPEEKRTFLGTFRERIIVA--LTQSQVREQGTY--KEVEELMSRN 61
#
# Query: 64 QPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKETRLE 123
# + L ++ L + Y+++A + + +++ + +L DHAI+ ++ +E
# Sbjct: 62 REAKLYLNGSLDFKYLRDYIQIADQLSIDYLVVSNQEKETDIGLVLAHDHAIDKEDIFIE 121
#
# Query: 124 VILKQTKNDQLSK 136
# + T+ D L K
# Sbjct: 122 ---EHTEKDDLEK 131
#
#
# >lin2086
# Length = 143
#
# Score = 41.2 bits (95), Expect = 8e-04
# Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
#
# Query: 3 NLEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQLV 62
# N++D L KG +G + +NP +++ YLGTY ERV+++ +E T ++YL EL L
# Sbjct: 4 NIDDYLEKGMYGAKEINPAEKKKYLGTYRERVLVALTKEEVLT---QEYLP-ELEKAILE 59
#
# Query: 63 YQPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKETRL 122
# L ++ L Y+KLA++ +I++ + +L A+N ++ L
# Sbjct: 60 NSDSKLLLNGLLHYNSLRPYIKLAEKCKHEFSIVSRLEGETDIYLVLACQKAVNKEDIHL 119
#
#
# >BS_yueI
# Length = 132
#
# Score = 37.0 bits (84), Expect = 0.014
# Identities = 32/116 (27%), Positives = 58/116 (49%), Gaps = 8/116 (6%)
#
# Query: 5 EDK----LLKGAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQ 60
# EDK L +G +G P+++ +LG+ ERVVL+ L + Q K Y + E L+
# Sbjct: 3 EDKMDLYLQQGMYGPLETKPDERHLFLGSLRERVVLA--LTKGQVLRSKPYKEAE-HELK 59
#
# Query: 61 LVYQPLHLKISSKLAPQLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAIN 116
# + + L I+ +L Q Y+++A +P I+++ +P ++ D A+N
# Sbjct: 60 NSHN-VTLLINGELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVIAADIAVN 114
#
#
# >RSc2325
# Length = 165
#
# Score = 32.7 bits (73), Expect = 0.26
# Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
#
# Query: 1 MTNLEDKLLKGAWGERRLNPEQQRYYLGTYAERVVLS----ALLDEAQTKTVKD 50
# MTN D+L + W ERR NPE R L V L+ AL+DEA + VK+
# Sbjct: 86 MTNRIDRLQQAGWVERRPNPEDGRGTL------VALTNAGFALIDEAVSAHVKN 133
#
#
# >CT434
# Length = 178
#
# Score = 31.2 bits (69), Expect = 0.88
# Identities = 24/74 (32%), Positives = 38/74 (50%), Gaps = 9/74 (12%)
#
# Query: 35 VLSALLDE-AQTKTVKD---YLKRELPSLQLVYQPLHLKIS-----SKLAPQLQILYMKL 85
# +L L DE +TK + D YL+ + SL+ + HL I+ KL PQL + ++
# Sbjct: 75 ILGGLADELLKTKGITDSVVYLQEAVASLKPTQRVSHLAITIEGKRPKLLPQLPSMRKRI 134
#
# Query: 86 AKENHLPVTIITET 99
# A+ H+P+ I T
# Sbjct: 135 AEVLHIPLDSINIT 148
#
#
# >ECU10g1380
# Length = 2410
#
# Score = 30.4 bits (67), Expect = 1.3
# Identities = 31/115 (26%), Positives = 50/115 (42%), Gaps = 11/115 (9%)
#
# Query: 35 VLSALLDEAQTKTVKDYLKRELPSLQLVYQPLHLKISSKLAPQLQILYMKLAK--ENHLP 92
# VL+++ E +K Y E +L L Y PLH+ +L+P ++ ++ ++ +
# Sbjct: 1614 VLNSMAAEELEDALKAYFD-ERRALSLTYVPLHISFYDRLSPDVRPVFEEMERMYREGFF 1672
#
# Query: 93 VTIITETHMTSPFAFILHTDHAINLKETRLEVILKQTKNDQLSKQTPEKTKSFWK 147
# I TE+ S D I +KE LE+ L D + K EK F K
# Sbjct: 1673 YDIKTESTKES-------DDETIGIKENFLEMDL-SIFGDFIRKSITEKDFPFAK 1719
#
#
# >RC1324
# Length = 316
#
# Score = 30.0 bits (66), Expect = 2.1
# Identities = 14/37 (37%), Positives = 26/37 (69%)
#
# Query: 108 ILHTDHAINLKETRLEVILKQTKNDQLSKQTPEKTKS 144
# IL+ D+AI L+++ ++ +K +ND+ S + EKTK+
# Sbjct: 254 ILNNDNAIKLEQSNIDKFMKTLQNDKESLLSQEKTKN 290
#
#
# >YPO2108
# Length = 370
#
# Score = 29.6 bits (65), Expect = 2.2
# Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 5/58 (8%)
#
# Query: 89 NHLPVTIITETH-----MTSPFAFILHTDHAINLKETRLEVILKQTKNDQLSKQTPEK 141
# NH P+ IT+ M PF L D A N++ R+ I+ KN L+ T E+
# Sbjct: 113 NHFPLASITKEQVYAAAMAQPFQGRLLRDWAENIEADRMTRIINTVKNGYLAGDTVEQ 170
#
#
# >lin1171
# Length = 511
#
# Score = 29.6 bits (65), Expect = 2.6
# Identities = 31/135 (22%), Positives = 59/135 (42%), Gaps = 13/135 (9%)
#
# Query: 11 GAWGERRLNPEQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQLVYQPLH--- 67
# G + + R+NP + ++ + + A+LD + D+ + +P +Q VYQ L
# Sbjct: 67 GVFPDVRMNPVLLKPTNDRQSQVIFMGAILDNMDAVSYHDFKQTLIPKIQAVYQSLADEN 126
#
# Query: 68 --LKISSKLAP------QLQILYMKLAKENHLPVTIITETHMTSPFAFILHTDHAINLKE 119
# + + +P I+ M +AK PV ++ + FA I T + +E
# Sbjct: 127 DIIVLEGAGSPAEINLNDRDIVNMGMAKMVDAPVVLVADIDKGGVFASIYGTIMLLKEEE 186
#
# Query: 120 -TRLE-VILKQTKND 132
# RL+ VI+ + + D
# Sbjct: 187 RARLKGVIINKFRGD 201
#
#
# >L19816
# Length = 142
#
# Score = 28.5 bits (62), Expect = 6.3
# Identities = 15/35 (42%), Positives = 21/35 (59%)
#
# Query: 50 DYLKRELPSLQLVYQPLHLKISSKLAPQLQILYMK 84
# D+LK E P L+++Y P SSK+ +L LY K
# Sbjct: 106 DFLKDEFPHLKIMYFPRGKISSSKVKEELGKLYQK 140
#
#
# >sll0776
# Length = 505
#
# Score = 27.7 bits (60), Expect = 8.7
# Identities = 20/74 (27%), Positives = 34/74 (45%)
#
# Query: 21 EQQRYYLGTYAERVVLSALLDEAQTKTVKDYLKRELPSLQLVYQPLHLKISSKLAPQLQI 80
# +QQ L + + ++L + K ++ R S + +YQ LH ISS P L +
# Sbjct: 222 DQQTGQLDWQSHVSKIDSVLAKVINKAIEMEPSRRYSSAEAMYQALHSLISSGAEPALPM 281
#
# Query: 81 LYMKLAKENHLPVT 94
# +++A N VT
# Sbjct: 282 ETVRVAPSNEFLVT 295
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.317 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,032,478
Number of Sequences: 192987
Number of extensions: 578480
Number of successful extensions: 1810
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 22
length of query: 152
length of database: 59,019,183
effective HSP length: 100
effective length of query: 52
effective length of database: 39,720,483
effective search space: 2065465116
effective search space used: 2065465116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)