Gene name

rhaR

Primary source

ECOCYC:EG10842

Locus tag

b3906

See related

EcoGene:EG10842

Gene type

protein coding

RefSeq status

PROVISIONAL

Organism

Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia

Also known as

ECK3899; JW3877; rhaC1; rhaR

Go to reference sequence detailsTry our new Sequence Viewer

Related Articles in PubMed

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

1.

CRP activates transcription from rhaSR as it would at simple class I promoters, albeit from a relatively distant position

Primary Source

GeneOntology Provided by Univ. Wisconsin

Names

DNA-binding transcriptional activator, L-rhamnose-binding

NP_418342.2

positive regulator for rhaRS operon

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

mRNA and Protein(s)

1. NP_418342.2 DNA-binding transcriptional activator, L-rhamnose-binding [Escherichia coli str. K-12 substr. MG1655]

   UniProtKB/Swiss-Prot

   P09378

   Conserved Domains (3) summary

   PRK13500
   Location:1–282
   Blast Score:1495

   PRK13500; transcriptional activator RhaR; Provisional

   pfam00165
   Location:233–276
   Blast Score:121

   HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family

   cl09118
   Location:20–162
   Blast Score:224

   Cupin_2; Cupin domain