BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
The files 
/repeatmasker/tmp/RM2sequpload_26495.stderr 
exist and will be overwritten.
Quit (^c) and rename files if you'd like to save them.

Repeat sequence:
   SW  perc perc perc  query               position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence            begin  end (left)    repeat   class/family  begin  end (left)  ID

  225   0.0  0.0  0.0  SSH5A10.SEQ(1>317)    262  286    (6) +  (A)n     Simple_repeat     1   25    (0)      

Alignments:
225  0.00  0.00  0.00  SSH5A10.SEQ(1>317)  262  286  (6)  (A)n#Simple_repeat  1  25  (155)  5

  SSH5A10.SEQ(1>3    262 AAAAAAAAAAAAAAAAAAAAAAAAA 286    
                                                  
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAA 25

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 25), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>SSH5A10.SEQ(1>317)
CSCCTACTGATGAGAGTTTGCTTACTCAGATAAAGGATGGGTTTGCTGAG
GGTAAGGACCTTGTTGTGTCAGTTATGTCTGCAATGGGTGAGGAGCAGAT
TTGTGCCCTGAAGGATATTGGGCCAAAGAACTAGCCTCAATTGCTTGTAG
TTTGTTGTTTTCATTTAAGCAAAGTTATATATTTTTGTATGATCTTGTTA
AGCCTCGGAGTCATGGAAGTTATCAACTGTGTTTATGGATGTGACAGAAA
CTGTTTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGT

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       292 bp
GC level:         36.99 %
bases masked:        25 bp (  8.56 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           25 bp     8.56 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  SSH5A10.SEQ(1>317)
        (292 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 5 Sequences     : less than 5 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1113 265 |=====================================================
   6310  848 158 |===============================
   3980  690 116 |=======================
   2510  574 146 |=============================
   1580  428 104 |====================
   1000  324  67 |=============
    631  257  48 |=========
    398  209  38 |=======
    251  171  50 |==========
    158  121  25 |=====
    100   96  12 |==
   63.1   84  30 |======
   39.8   54  10 |==
   25.1   44   3 |:
   15.8   41  10 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 31  <<<<<<<<<<<<<<<<<
   10.0   31   2 |:
   6.31   29   0 |
   3.98   29   1 |:
   2.51   28   3 |:
   1.58   25   1 |:
   1.00   24   3 |:
   0.63   21   1 |:
   0.40   20   0 |
   0.25   20   0 |
   0.16   20   1 |:
   0.10   19   1 |:
  0.063   18   0 |
  0.040   18   1 |:
  0.025   17   0 |
  0.016   17   0 |
  0.010   17   0 |
 0.0063   17   0 |
 0.0040   17   0 |
 0.0025   17   1 |:
 0.0016   16   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|124230|sp|P26564|IF5A_MEDSAINITIATION FACTOR 5A (E... +3   205  1.1e-15   1
gi|124226|sp|P24922|IF52_NICPLINITIATION FACTOR 5A-2 ... +3   205  1.1e-15   1
gi|6689385|emb|CAB65463.1|(AJ238624) translation init... +3   201  3.0e-15   1
gi|6752917|gb|AAF27938.1|AF225297_1(AF225297) transla... +3   194  1.7e-14   1
gi|3024021|sp|P56336|IF54_SOLTUINITIATION FACTOR 5A-4... +3   192  2.7e-14   1
gi|3024022|sp|P56337|IF55_SOLTUINITIATION FACTOR 5A-5... +3   190  4.4e-14   1
gi|3789948|gb|AAC67555.1|(AF094773) translation initi... +3   187  9.2e-14   1
gi|7705083|gb|AAF67762.1|(AC018364) putative eukaryot... +3   186  1.2e-13   1
gi|124224|sp|P24921|IF51_NICPLINITIATION FACTOR 5A-1 ... +3   183  2.4e-13   1
gi|100277|pir||S21058translation initiation factor eI... +3   183  2.4e-13   1
gi|3024020|sp|P56335|IF53_SOLTUINITIATION FACTOR 5A-3... +3   183  2.4e-13   1
gi|3024018|sp|P56332|IF5A_MAIZEINITIATION FACTOR 5A (... +3   177  1.1e-12   1
gi|3024019|sp|P56333|IF51_SOLTUINITIATION FACTOR 5A (... +3   174  2.2e-12   1
gi|5080771|gb|AAD39281.1|AC007576_4(AC007576) initiat... +3   167  1.2e-11   1
gi|7492108|pir||T40248initiation factor eif-5a - fiss... +3    94  0.00066   1
gi|3024014|sp|P56289|IF5A_SCHPOINITIATION FACTOR EIF-... +3    92  0.0011    1
gi|2696656|dbj|BAA24001.1|(AB009604) eIF5A [Schizosac... +3    89  0.0022    1
gi|7387802|sp|O94083|IF5A_CANALINITIATION FACTOR 5A (... +3    80  0.029     1
gi|6320801ref|NP_010880.1| Translation initiation fac... +3    76  0.081     1
gi|6322507ref|NP_012581.1| anaerobically expressed fo... +3    75  0.11      1
gi|6469515|gb|AAF13315.1|AF109730_1(AF109730) transla... +3    70  0.36      1
gi|1722826|sp|Q01352|VU5_HSV6UU5 PROTEIN >gi|853984|e... +2    75  0.50      1
gi|4995992|dbj|BAA78225.1|(AB021506) 94.6% identical ... +2    74  0.59      1
gi|281200|pir||JQ1650SSL1 protein - human herpesvirus 6  +2    75  0.63      1
gi|6721550|dbj|BAA89580.1|(AP001073) Similar to Oryza... +3    77  0.68      1
gi|7291729|gb|AAF47151.1|(AE003462) CG3186 gene produ... +3    65  0.81      1
gi|5733531|gb|AAD49634.1|AF157706_23(AF157706) U7 [Hu... +2    74  0.88      1
gi|7296394|gb|AAF51682.1|(AE003593) CG12976 gene prod... -2    68  0.92      1
gi|6325332ref|NP_015401.1| Ypr076wp >gi|2132264|pir||... -2    63  0.94      1
gi|542293|pir||S41856TyA protein - yeast (Saccharomyc... -2    61  0.999     1
gi|6320375ref|NP_010455.1| Ydr170w-ap >gi|1072508|pir... -2    65  0.9997    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|124230              |______________________                            
gi|124226              |______________________                            
gi|6689385             |______________________                            
gi|6752917             |______________________                            
gi|3024021             |______________________                            
gi|3024022             |______________________                            
gi|3789948             |______________________                            
gi|7705083             |______________________                            
gi|124224              |______________________                            
gi|100277              |______________________                            
gi|3024020             |______________________                            
gi|3024018             |______________________                            
gi|3024019             |______________________                            
gi|5080771             |______________________                            
gi|7492108             |____________________                              
gi|3024014             |____________________                              
gi|2696656             |    ________________                              
gi|7387802             |    __________________                            
gi|6320801             |    ________________                              
gi|6322507             |      ________________                            
gi|6469515             | __________________                               
gi|6721550             | ________________________________                 
gi|7291729             |    _______________                               
                        __________________________________________________
Query sequence:        |         |         |          |         |         | 98
                       0        20        40         60        80


Locus_ID                Frame 2 Hits
gi|1722826             |                  _______________________         
gi|4995992             |                  _______________________         
gi|281200              |                  _______________________         
gi|5733531             |                  _______________________         
                        __________________________________________________
Query sequence:        |         |         |          |         |         | 98
                       0        20        40         60        80


Locus_ID                Frame -2 Hits
gi|7296394             |     ____________________                         
gi|6325332             | ___________________________                      
gi|542293              |       ____________________                       
gi|6320375             |  _________________________                       
                        __________________________________________________
Query sequence:        |         |         |          |         |         | 98
                       0        20        40         60        80


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|124230|sp|P26564|IF5A_MEDSA  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|72894|pir||FIAAA translation initiation factor eIF-5A - alfalfa
            >gi|19601|emb|CAA42065.1| (X59441) eukaryotic translation
            initiation factor 4D [Medicago sativa]
            Length = 161

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 161
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..155
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..118
   PRODOM               PD003614: IF51(2) IF5A(2)                123..159
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 205 (72.2 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 41/43 (95%), Positives = 42/43 (97%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 131
             PTD+SLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIG KN
Sbjct:   119 PTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161


 >gi|124226|sp|P24922|IF52_NICPL  INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D)
            >gi|100278|pir||S21059 translation initiation factor eIF-5A.2 -
            curled-leaved tobacco >gi|19702|emb|CAA45104.1| (X63542) eukaryotic
            initiation  factor 5A (2) [Nicotiana plumbaginifolia]
            Length = 159

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                123..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 205 (72.2 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 40/42 (95%), Positives = 42/42 (100%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD++LLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct:   118 PTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159


 >gi|6689385|emb|CAB65463.1|  (AJ238624) translation initiation factor 5A
            precursor protein (eIF-5A) [Senecio vernalis]
            Length = 159

Frame  3 hits (HSPs):                                       ______________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 201 (70.8 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD++LLTQIKDGF EGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct:   118 PTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159


 >gi|6752917|gb|AAF27938.1|AF225297_1  (AF225297) translation initiation factor
            5A [Euphorbia esula]
            Length = 156

Frame  3 hits (HSPs):                                       ______________
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 194 (68.3 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 37/42 (88%), Positives = 41/42 (97%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTDESLL+QIKDGF +GKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   115 PTDESLLSQIKDGFGDGKDLVVTVMSSMGEEQICALKDIGPK 156


 >gi|3024021|sp|P56336|IF54_SOLTU  INITIATION FACTOR 5A-4 (EIF-5A) (EIF-4D)
            >gi|2225883|dbj|BAA20878.1| (AB004825) eukaryotic initiation factor
            5A4 [Solanum tuberosum]
            Length = 159

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                122..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 192 (67.6 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 39/42 (92%), Positives = 41/42 (97%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD+SLL+QIKDGFAEGKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct:   118 PTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159


 >gi|3024022|sp|P56337|IF55_SOLTU  INITIATION FACTOR 5A-5 (EIF-5A) (EIF-4D)
            >gi|2225885|dbj|BAA20879.1| (AB004826) eukaryotic initiation factor
            5A5 [Solanum tuberosum]
            Length = 159

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                122..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 190 (66.9 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 35/42 (83%), Positives = 40/42 (95%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD++LL Q+KDGFAEGKDLV+SVMSAMGEEQIC +KDIGPK
Sbjct:   118 PTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159


 >gi|3789948|gb|AAC67555.1|  (AF094773) translation initiation factor 5A [Oryza
            sativa]
            Length = 160

Frame  3 hits (HSPs):                                       ______________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 9.2e-14, P = 9.2e-14
 Identities = 37/42 (88%), Positives = 39/42 (92%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD+SLL QIK GF EGKDLVV+VMSAMGEEQICALKDIGPK
Sbjct:   119 PTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160


 >gi|7705083|gb|AAF67762.1|  (AC018364) putative eukaryotic initiation factor 5A
            (eIF-5A) [Arabidopsis thaliana]
            Length = 158

Frame  3 hits (HSPs):                                       ______________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 186 (65.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 34/42 (80%), Positives = 41/42 (97%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTDE+LLTQ+K+GF EGKD+VVSVMSAMGEEQ+CALK++GPK
Sbjct:   117 PTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158


 >gi|124224|sp|P24921|IF51_NICPL  INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D)
            >gi|100345|pir||S21060 translation initiation factor eIF-5A -
            common tobacco >gi|19887|emb|CAA45105.1| (X63543) eukaryotic
            initiatin factor 5A (3) [Nicotiana tabacum]
            Length = 159

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   DOMO                 DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 28..156
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                123..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 183 (64.4 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 34/42 (80%), Positives = 39/42 (92%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD++LL  IKDGFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct:   118 PTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159


 >gi|100277|pir||S21058  translation initiation factor eIF-5A.1 - curled-leaved
            tobacco (fragment) >gi|829282|emb|CAA45103.1| (X63541) eukaryotic
            initiation factor 5A (1) [Nicotiana plumbaginifolia]
            Length = 145

Frame  3 hits (HSPs):                                      _______________
Annotated Domains:                  ___                                   
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   Entrez               modified site: N6-(4-amino-2-hydroxybuty 38
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 36..43
__________________


  Plus Strand HSPs:

 Score = 183 (64.4 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 34/42 (80%), Positives = 39/42 (92%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTD++LL  IKDGFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct:   104 PTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 145


 >gi|3024020|sp|P56335|IF53_SOLTU  INITIATION FACTOR 5A-3 (EIF-5A) (EIF-4D)
            >gi|7443511|pir||T07133 translation initiation factor eIF-5A3 -
            potato >gi|2225881|dbj|BAA20877.1| (AB004824) eukaryotic initiation
            factor 5A3 [Solanum tuberosum]
            Length = 160

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..141
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 183 (64.4 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 37/43 (86%), Positives = 39/43 (90%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 131
             PTDESLL Q+KDGF EGKDLVVSVMSAMGEEQI A+KDIG KN
Sbjct:   118 PTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160


 >gi|3024018|sp|P56332|IF5A_MAIZE  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|7443512|pir||T01355 translation initiation factor eIF-5A -
            maize >gi|1546919|emb|CAA69225.1| (Y07920) translation initiation
            factor 5A [Zea mays] >gi|2668738|gb|AAB88614.1| (AF034943)
            translation initiation factor 5A [Zea mays]
            Length = 160

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 28..81
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 53
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  13..155
   PRODOM               PD015048: IF51(2) IF5A(2)                1..23
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       25..121
   PRODOM               PD003614: IF51(2) IF5A(2)                123..159
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 51..58
__________________


  Plus Strand HSPs:

 Score = 177 (62.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 33/42 (78%), Positives = 38/42 (90%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             PTDE+L+ QIK+GF  GKDLVV+V SAMGEEQICALKD+GPK
Sbjct:   119 PTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160


 >gi|3024019|sp|P56333|IF51_SOLTU  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|2225879|dbj|BAA20876.1| (AB004823) eukaryotic initiation factor
            5A2 [Solanum tuberosum] >gi|2225887|dbj|BAA20880.1| (AB004827)
            eukaryotic initiation factor 5A1 [Solanum tuberosum]
            Length = 160

Frame  3 hits (HSPs):                                       ______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                123..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 174 (61.3 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 33/43 (76%), Positives = 39/43 (90%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 131
             PTD++LL Q+K GF EGKDLV+SVMSAMGEEQICA+KDIG K+
Sbjct:   118 PTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160


 >gi|5080771|gb|AAD39281.1|AC007576_4  (AC007576) initiation factor 5A-4
            [Arabidopsis thaliana]
            Length = 158

Frame  3 hits (HSPs):                                       ______________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 167 (58.8 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 34/42 (80%), Positives = 37/42 (88%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             P D++LL QIK GF +GKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct:   117 PNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158


 >gi|7492108|pir||T40248  initiation factor eif-5a - fission yeast
            (Schizosaccharomyces pombe) >gi|6048299|emb|CAB58162.1| (AL121815)
            initiation factor eif-5a [Schizosaccharomyces pombe]
            Length = 157

Frame  3 hits (HSPs):                                       _____________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 94 (33.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 20/38 (52%), Positives = 28/38 (73%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKD 116
             P  E L  +I++GF EGKDL+++V+SAMGEE   A +D
Sbjct:   117 PEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153


 >gi|3024014|sp|P56289|IF5A_SCHPO  INITIATION FACTOR EIF-5A
            >gi|7492107|pir||T38429 initiation factor eif-5a - fission yeast
            (Schizosaccharomyces pombe) >gi|2398819|emb|CAB16195.1| (Z99126)
            initiation factor eif-5a. [Schizosaccharomyces pombe]
            Length = 157

Frame  3 hits (HSPs):                                       _____________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..152
   PRODOM               PD056987: IF5A_SCHPO                     1..25
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       27..127
   PRODOM               PD192718: IF5A_SCHPO                     129..156
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.0011, P = 0.0011
 Identities = 19/38 (50%), Positives = 28/38 (73%), Frame = +3

Query:     3 PTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKD 116
             P  E L  +I++GF EG+DL+++V+SAMGEE   A +D
Sbjct:   117 PEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153


 >gi|2696656|dbj|BAA24001.1|  (AB009604) eIF5A [Schizosaccharomyces pombe]
            Length = 33

Frame  3 hits (HSPs):   ____________________________________________      
                        __________________________________________________
Database sequence:     |                            |                     | 33
                       0                           20

  Plus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 0.0022, P = 0.0022
 Identities = 16/29 (55%), Positives = 24/29 (82%), Frame = +3

Query:    30 IKDGFAEGKDLVVSVMSAMGEEQICALKD 116
             I++GF EG+DL+++V+SAMGEE   A +D
Sbjct:     1 IEEGFDEGRDLIITVVSAMGEETALACRD 29


 >gi|7387802|sp|O94083|IF5A_CANAL  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|4204352|gb|AAD10697.1| (U07366) eIF-5A [Candida albicans]
            Length = 157

Frame  3 hits (HSPs):                                         ___________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 80 (28.2 bits), Expect = 0.029, P = 0.029
 Identities = 16/34 (47%), Positives = 25/34 (73%), Frame = +3

Query:    27 QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 128
             +++  F EGKDL+V+++SAMGEE   + K+  PK
Sbjct:   122 KLQSEFDEGKDLIVTIISAMGEEAAISYKE-APK 154


 >gi|6320801  ref|NP_010880.1| Translation initiation factor eIF-5A; Hyp2p
            >gi|124227|sp|P23301|IF52_YEAST INITIATION FACTOR 5A-2 (EIF-5A)
            (EIF-4D) (HYPUSINE CONTAINING PROTEIN HP2) >gi|72892|pir||FIBYA1
            translation initiation factor eIF-5A.1 - yeast (Saccharomyces
            cerevisiae) >gi|3806|emb|CAA39693.1| (X56236) hypusine containing
            protein  HP2 [Saccharomyces cerevisiae] >gi|172980|gb|AAA35155.1|
            (M63541) initiation factor 5A [Saccharomyces cerevisiae]
            >gi|603645|gb|AAB65008.1| (U18779) Hyp2p: translation initiation
            factor eIF-5A [Saccharomyces cerevisiae]
            >gi|1181617|dbj|BAA11826.1| (D83166) eukaryotic translation
            initiation factor 5A precursor [Saccharomyces cerevisiae]
            Length = 157

Frame  3 hits (HSPs):                                          __________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.085, P = 0.081
 Identities = 14/29 (48%), Positives = 22/29 (75%), Frame = +3

Query:    30 IKDGFAEGKDLVVSVMSAMGEEQICALKD 116
             ++  F EGKDL+V+++SAMGEE   + K+
Sbjct:   124 LQTAFDEGKDLMVTIISAMGEEAAISFKE 152


 >gi|6322507  ref|NP_012581.1| anaerobically expressed form of translation
            initiation factor eIF-5A; Anb1p >gi|124225|sp|P19211|IF51_YEAST
            INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D) (HYPUSINE CONTAINING
            PROTEIN HP1) >gi|72893|pir||FIBYA2 translation initiation factor
            eIF-5A.2 - yeast (Saccharomyces cerevisiae)
            >gi|3804|emb|CAA39692.1| (X56235) hypusine containing protein  HP1
            [Saccharomyces cerevisiae] >gi|171062|gb|AAA34425.1| (J05455)
            protein synthesis initiation factor (eIF-4D) [Saccharomyces
            cerevisiae] >gi|172982|gb|AAA35156.1| (M63542) initiation factor 5A
            [Saccharomyces cerevisiae] >gi|1015705|emb|CAA89575.1| (Z49547) ORF
            YJR047c [Saccharomyces cerevisiae] >gi|1197076|gb|AAA88750.1|
            (L36344) ORF; putative [Saccharomyces cerevisiae]
            Length = 157

Frame  3 hits (HSPs):                                           __________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.11, P = 0.11
 Identities = 15/30 (50%), Positives = 23/30 (76%), Frame = +3

Query:    42 FAEGKDLVVSVMSAMGEEQICALKDIGPKN 131
             F EGKDL+V+++SAMGEE   + K+  P++
Sbjct:   128 FDEGKDLMVTIISAMGEEAAISFKE-APRS 156


 >gi|6469515|gb|AAF13315.1|AF109730_1  (AF109730) translation initiation factor
            5A [Spodoptera exigua] >gi|6469517|gb|AAF13316.1|AF109731_1
            (AF109731) translation initiation factor 5A [Spodoptera frugiperda]
            Length = 160

Frame  3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.45, P = 0.36
 Identities = 14/35 (40%), Positives = 23/35 (65%), Frame = +3

Query:     9 DESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALK 113
             D  L TQ++  F  GK+L+ +V+ + GEE + A+K
Sbjct:   119 DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153


 >gi|1722826|sp|Q01352|VU5_HSV6U  U5 PROTEIN >gi|853984|emb|CAA58432.1| (X83413)
            U5 [Human herpesvirus 6] >gi|3417442|dbj|BAA32340.1| (D10082) ORF
            [Human herpesvirus 6]
            Length = 444

Frame  2 hits (HSPs):       ______                                        
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 444
                       0              150              300
__________________

Annotated Domains:
   DOMO                 DM06760:                                 1..443
   PRODOM               PD025194: VU5(2) VU4(2) O56270(1)        2..425
__________________


  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.70, P = 0.50
 Identities = 18/42 (42%), Positives = 22/42 (52%), Frame = +2

Query:   113 GYWAKELASIACSLLFSFKQSYIFLYDLVKP--RSHGSYQLCLW 238
             GYW + L+  A  LLF F+     L +L K   R  G Y LC W
Sbjct:    42 GYWCRYLSEYASMLLFQFESK---LKELTKESTRQLGGYNLCHW 82


 >gi|4995992|dbj|BAA78225.1|  (AB021506) 94.6% identical to U5 gene of strain
            U1102 of HHV-6 [Human herpesvirus 6]
            Length = 443

Frame  2 hits (HSPs):       ______                                        
                        __________________________________________________
Database sequence:     |                |                |                | 443
                       0              150              300

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 0.89, P = 0.59
 Identities = 18/42 (42%), Positives = 21/42 (50%), Frame = +2

Query:   113 GYWAKELASIACSLLFSFKQSYIFLYDLVKP--RSHGSYQLCLW 238
             GYW + L   A  LLF F+     L +L K   R  G Y LC W
Sbjct:    42 GYWCRYLCEYASMLLFQFESK---LKELTKESTRQLGGYNLCHW 82


 >gi|281200|pir||JQ1650  SSL1 protein - human herpesvirus 6
            Length = 587

Frame  2 hits (HSPs):                  _____                              
                        __________________________________________________
Database sequence:     |            |            |            |           | 587
                       0          150          300          450

  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.99, P = 0.63
 Identities = 18/42 (42%), Positives = 22/42 (52%), Frame = +2

Query:   113 GYWAKELASIACSLLFSFKQSYIFLYDLVKP--RSHGSYQLCLW 238
             GYW + L+  A  LLF F+     L +L K   R  G Y LC W
Sbjct:   185 GYWCRYLSEYASMLLFQFESK---LKELTKESTRQLGGYNLCHW 225


 >gi|6721550|dbj|BAA89580.1|  (AP001073) Similar to Oryza sativa gene for Pib
            (AB013448)
            Length = 1011

Frame  3 hits (HSPs):               ____                                  
                        __________________________________________________
Database sequence:     |       |      |       |      |       |      |     | 1011
                       0     150    300     450    600     750    900

  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 1.1, P = 0.68
 Identities = 24/61 (39%), Positives = 31/61 (50%), Frame = +3

Query:    12 ESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN*PQLLVVCCFHLSKVIYFCM 191
             ESLL Q+   FA  +D   S    M  E+   L+ I  K+ PQLL  C  HLS   YF +
Sbjct:   259 ESLLEQL---FAPARDPRCSRKEIMAMEKDEILRGIETKDIPQLLAHCSTHLSDKRYFIV 315

Query:   192 I 194
             +
Sbjct:   316 V 316


 >gi|7291729|gb|AAF47151.1|  (AE003462) CG3186 gene product [Drosophila
            melanogaster]
            Length = 159

Frame  3 hits (HSPs):                                         __________  
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 1.6, P = 0.81
 Identities = 13/29 (44%), Positives = 20/29 (68%), Frame = +3

Query:    27 QIKDGFAEGKDLVVSVMSAMGEEQICALK 113
             Q++  F  GKDL+ +V+ A GEE + A+K
Sbjct:   124 QLRLDFDSGKDLLCTVLKACGEECVIAIK 152


 >gi|5733531|gb|AAD49634.1|AF157706_23  (AF157706) U7 [Human herpesvirus 6B]
            Length = 903

Frame  2 hits (HSPs):                              ___                    
                        __________________________________________________
Database sequence:     |        |       |       |        |       |       || 903
                       0      150     300     450      600     750     900

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 2.1, P = 0.88
 Identities = 18/42 (42%), Positives = 21/42 (50%), Frame = +2

Query:   113 GYWAKELASIACSLLFSFKQSYIFLYDLVKP--RSHGSYQLCLW 238
             GYW + L   A  LLF F+     L +L K   R  G Y LC W
Sbjct:   502 GYWCRYLCEYASMLLFQFESK---LKELTKESTRQLGGYNLCHW 542


 >gi|7296394|gb|AAF51682.1|  (AE003593) CG12976 gene product [Drosophila
            melanogaster]
            Length = 314

Frame -2 hits (HSPs):                ______                               
                        __________________________________________________
Database sequence:     |       |       |       |       |       |       |  | 314
                       0      50     100     150     200     250     300

  Minus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 2.5, P = 0.92
 Identities = 17/38 (44%), Positives = 20/38 (52%), Frame = -2

Query:   147 QAIEASSLAQYPSGHKSAPHPLQT*LTQQGPYPQQTHP 34
             Q I  SS+  YP      PHP Q    QQ P+PQQ+ P
Sbjct:    84 QQIIPSSVLHYPP----RPHPYQQLPQQQQPHPQQSQP 117


 >gi|6325332  ref|NP_015401.1| Ypr076wp >gi|2132264|pir||S70043 hypothetical
            protein YPR076w - yeast (Saccharomyces cerevisiae)
            >gi|2347153|gb|AAB68143.1| (U51033) Ypr076wp [Saccharomyces
            cerevisiae]
            Length = 124

Frame -2 hits (HSPs):                  ____________________               
                        __________________________________________________
Database sequence:     |                   |                   |          | 124
                       0                  50                 100

  Minus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 2.9, P = 0.94
 Identities = 18/51 (35%), Positives = 24/51 (47%), Frame = -2

Query:   162 ENNKLQAIEASSLAQYPSGHKSAPHPLQT*LTQQGPYPQQTHPLSE*ANSH 10
             E +KL + E+   AQY  GH S  H  +  +TQ  P  Q  H   E   +H
Sbjct:    39 EEDKLLSCESDCFAQYVDGHLS--HVNEV-ITQYSPEAQTGHDAVESQTTH 86


 >gi|542293|pir||S41856  TyA protein - yeast (Saccharomyces cerevisiae)
            retrotransposon Ty (fragment) >gi|4655|emb|CAA28728.1| (X05058) ORF
            (Ty transposon) [Saccharomyces cerevisiae]
            Length = 105

Frame -2 hits (HSPs):                          ___________________        
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 105
                       0        20       40        60       80       100

  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 6.8, P = 1.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Frame = -2

Query:   156 NKLQAIEASSLAQYPSGHKSAPHPLQT*LTQQGPYPQQ 43
             N  Q    +S A   + H ++P   Q+   Q GPYPQQ
Sbjct:    51 NSQQTTTPASSAVPENPHHASPQTAQSHSPQNGPYPQQ 88


 >gi|6320375  ref|NP_010455.1| Ydr170w-ap >gi|1072508|pir||S49765 TyA protein -
            yeast (Saccharomyces cerevisiae) retrotransposon TY1A_DR2
            >gi|1289284|emb|CAA86697.1| (Z46727) unknown [Saccharomyces
            cerevisiae]
            Length = 440

Frame -2 hits (HSPs):        ______                                       
                        __________________________________________________
Database sequence:     |                |                |                | 440
                       0              150              300

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 8.2, P = 1.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Frame = -2

Query:   156 NKLQAIEASSLAQYPSGHKSAPHPLQT*LTQQGPYPQQTHPLSE*AN 16
             N  Q     S A   + H ++P   Q  L Q GPYPQQ     + AN
Sbjct:    51 NSQQPTTPPSAAVPENHHHASPQAAQVPLPQNGPYPQQRMMTPQQAN 97


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.97

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.334   0.148   0.473  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.364   0.165   0.707  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.375   0.167   0.623  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.352   0.153   0.480  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.363   0.159   0.585  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.340   0.144   0.455  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       96        87       10.  62 3  12 22  0.12    31
                                                    28  0.10    33
   +2      0       97        88       10.  63 3  12 22  0.12    31
                                                    28  0.11    33
   +1      0       97        87       10.  62 3  12 22  0.12    31
                                                    28  0.10    33
   -1      0       97        88       10.  63 3  12 22  0.12    31
                                                    28  0.11    33
   -2      0       97        88       10.  63 3  12 22  0.12    31
                                                    28  0.11    33
   -3      0       96        87       10.  62 3  12 22  0.12    31
                                                    28  0.10    33


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  31
  No. of states in DFA:  593 (58 KB)
  Total size of DFA:  134 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  126.57u 1.04s 127.61t  Elapsed: 00:01:51
  Total cpu time:  126.63u 1.10s 127.73t  Elapsed: 00:01:51
  Start:  Wed Feb 14 20:18:22 2001   End:  Wed Feb 14 20:20:13 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000