BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= ANA_0805
(103 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154508783|ref|ZP_02044425.1| hypothetical protein ACTODO... 96 9e-19
gi|72161465|ref|YP_289122.1| hypothetical protein Tfu_1061 ... 87 2e-16
gi|84496652|ref|ZP_00995506.1| hypothetical protein JNB_039... 87 3e-16
gi|119883933|ref|ZP_01650181.1| putative integration host f... 83 6e-15
gi|68234180|ref|ZP_00573273.1| putative integration host fa... 81 2e-14
gi|62426343|ref|ZP_00381471.1| hypothetical protein BlinB01... 79 9e-14
gi|15608527|ref|NP_215904.1| PUTATIVE INTEGRATION HOST FACT... 78 2e-13
gi|68536097|ref|YP_250802.1| putative integration host fact... 77 2e-13
gi|25028283|ref|NP_738337.1| hypothetical protein CE1727 [C... 76 5e-13
gi|152966937|ref|YP_001362721.1| hypothetical protein Krad_... 76 5e-13
gi|86741882|ref|YP_482282.1| putative integration host fact... 76 7e-13
gi|118617402|ref|YP_905734.1| integration host factor MihF ... 76 7e-13
gi|145295729|ref|YP_001138550.1| hypothetical protein cgR_1... 75 1e-12
gi|119716662|ref|YP_923627.1| hypothetical protein Noca_243... 75 1e-12
gi|38233915|ref|NP_939682.1| integration host factor [Coryn... 75 1e-12
gi|21219981|ref|NP_625760.1| hypothetical protein SCO1480 [... 75 1e-12
gi|19552819|ref|NP_600821.1| hypothetical protein NCgl1545 ... 75 1e-12
gi|41407220|ref|NP_960056.1| MIHF [Mycobacterium avium subs... 75 2e-12
gi|29833412|ref|NP_828046.1| hypothetical protein SAV6870 [... 75 2e-12
gi|118462761|ref|YP_882568.1| MihF protein [Mycobacterium a... 75 2e-12
gi|111018336|ref|YP_701308.1| probable integration host fac... 74 2e-12
gi|25005455|dbj|BAC23143.1| probable mIHF protein [Streptom... 74 2e-12
gi|145224323|ref|YP_001135001.1| MihF [Mycobacterium gilvum... 74 3e-12
gi|118473958|ref|YP_887366.1| integration host factor [Myco... 73 5e-12
gi|81254669|ref|ZP_00879181.1| hypothetical protein MtubC_0... 72 9e-12
gi|15827196|ref|NP_301459.1| putative integration host fact... 72 9e-12
gi|120403650|ref|YP_953479.1| MihF [Mycobacterium vanbaalen... 72 1e-11
gi|15840847|ref|NP_335884.1| mIHF [Mycobacterium tuberculos... 72 1e-11
gi|108799336|ref|YP_639533.1| MIHF [Mycobacterium sp. MCS] ... 71 2e-11
gi|111024104|ref|YP_707076.1| probable integration host fac... 71 2e-11
gi|111224605|ref|YP_715399.1| putative integration host fac... 70 4e-11
gi|111025392|ref|YP_707812.1| probable integration host fac... 69 6e-11
gi|54025587|ref|YP_119829.1| putative integration host fact... 68 1e-10
gi|50842669|ref|YP_055896.1| integration host factor [Propi... 65 1e-09
gi|119960938|ref|YP_948003.1| putative integration host fac... 64 2e-09
gi|116670807|ref|YP_831740.1| putative integration host fac... 63 4e-09
gi|54023305|ref|YP_117547.1| putative integration host fact... 61 2e-08
gi|134098669|ref|YP_001104330.1| putative integration host ... 60 4e-08
gi|139439780|ref|ZP_01773171.1| Hypothetical protein COLAER... 60 5e-08
gi|139439591|ref|ZP_01773004.1| Hypothetical protein COLAER... 59 6e-08
gi|117928501|ref|YP_873052.1| putative integration host fac... 57 3e-07
>gi|154508783|ref|ZP_02044425.1| hypothetical protein ACTODO_01292 [Actinomyces odontolyticus ATCC
17982]
gi|153798417|gb|EDN80837.1| hypothetical protein ACTODO_01292 [Actinomyces odontolyticus ATCC
17982]
Length = 106
Score = 95.5 bits (236), Expect = 9e-19, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 75/103 (72%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRAQALEKA AR RA +K+ LK+ + LSE +++D+ + KMKV +L
Sbjct: 4 MALPDLTPEQRAQALEKATQARRRRAEVKNALKARSMNLSEVLELADSDEAVAKMKVVSL 63
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLPRVGT TA ++ + IA+SRRVRGLG QR ALVERFG
Sbjct: 64 LESLPRVGTNTAAVLMDEYKIAQSRRVRGLGPVQRKALVERFG 106
>gi|72161465|ref|YP_289122.1| hypothetical protein Tfu_1061 [Thermobifida fusca YX]
gi|71915197|gb|AAZ55099.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 105
Score = 87.4 bits (215), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/103 (60%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRA ALEKAA AR RA +K LK G + L+E +T++V+GKMKV AL
Sbjct: 1 MALPPLTPEQRAAALEKAAKARKERAEVKHRLKHGGISLTEVLKLGQTNEVIGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I+ ++IAESRR+RGLGANQRAAL FG
Sbjct: 61 LESLPGVGKVRAKQIMERLNIAESRRIRGLGANQRAALESEFG 103
>gi|84496652|ref|ZP_00995506.1| hypothetical protein JNB_03995 [Janibacter sp. HTCC2649]
gi|84383420|gb|EAP99301.1| hypothetical protein JNB_03995 [Janibacter sp. HTCC2649]
Length = 105
Score = 87.0 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/102 (54%), Positives = 73/102 (71%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQR+ ALEKAA AR RA +K+ LK + L E + +++DV+GKM+V AL
Sbjct: 1 MALPPLTPEQRSAALEKAAQARRERAAVKNRLKYAQGDLKEVISEGKSNDVIGKMRVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L S+P VG A A++ D+ I+ESRRVRGLG NQ +AL+ RF
Sbjct: 61 LESMPGVGRVKAKALMEDIGISESRRVRGLGQNQISALLTRF 102
>gi|119883933|ref|ZP_01650181.1| putative integration host factor MihF [Salinispora arenicola
CNS205]
gi|145594403|ref|YP_001158700.1| hypothetical protein Strop_1860 [Salinispora tropica CNB-440]
gi|119823293|gb|EAX25862.1| putative integration host factor MihF [Salinispora arenicola
CNS205]
gi|145303740|gb|ABP54322.1| hypothetical protein Strop_1860 [Salinispora tropica CNB-440]
Length = 105
Score = 82.8 bits (203), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/103 (50%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP+LTPEQRA ALEKAA R RA +K +LK G+ L +E+DDV+GK+KV A+
Sbjct: 1 MPLPSLTPEQRAAALEKAAEIRKARAELKEQLKQGKTTLGAVLERAESDDVVGKLKVSAV 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L ++P +G A I+ + IA+SRR+RGLG QR AL+ F
Sbjct: 61 LQAMPGIGKIRATQIMEKLKIADSRRLRGLGEQQRKALLGEFA 103
>gi|68234180|ref|ZP_00573273.1| putative integration host factor MihF [Frankia sp. EAN1pec]
gi|68198214|gb|EAN12493.1| putative integration host factor MihF [Frankia sp. EAN1pec]
Length = 106
Score = 81.3 bits (199), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/103 (57%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
MTLP LTPEQRA ALEKAA AR RA +K LK GE+ L+ +++D+V+GKMKV A+
Sbjct: 1 MTLPPLTPEQRAAALEKAALARKQRAELKERLKKGEISLAAVLELADSDEVVGKMKVSAV 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I + I+ +RR+RGLGA QRAAL+E FG
Sbjct: 61 LESLPGVGRVRAQKIRERLGISPTRRLRGLGAKQRAALLEEFG 103
>gi|62426343|ref|ZP_00381471.1| hypothetical protein BlinB01000136 [Brevibacterium linens BL2]
Length = 103
Score = 79.0 bits (193), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/102 (48%), Positives = 69/102 (67%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M L LTP+QR+ AL+KA AR RA +KS LK+G+ L+ ++ D+ L KM+V L
Sbjct: 1 MALEPLTPQQRSAALDKAFKARQARAEVKSALKNGQTDLAAVLKKADADEALAKMRVVDL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L SLP VG A+A + DV IA SRR++GLG +Q+ AL+E++
Sbjct: 61 LRSLPGVGDRRAEAAMGDVGIASSRRIKGLGVHQKNALLEKY 102
>gi|15608527|ref|NP_215904.1| PUTATIVE INTEGRATION HOST FACTOR MIHF [Mycobacterium tuberculosis
H37Rv]
gi|31792582|ref|NP_855075.1| PUTATIVE INTEGRATION HOST FACTOR MIHF [Mycobacterium bovis
AF2122/97]
gi|121637318|ref|YP_977541.1| putative integration host factor mihF [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661179|ref|YP_001282702.1| putative integration host factor MihF [Mycobacterium tuberculosis
H37Ra]
gi|148822608|ref|YP_001287362.1| integration host factor mihF [Mycobacterium tuberculosis F11]
gi|1542896|emb|CAB02193.1| PUTATIVE INTEGRATION HOST FACTOR MIHF [Mycobacterium tuberculosis
H37Rv]
gi|31618171|emb|CAD94284.1| PUTATIVE INTEGRATION HOST FACTOR MIHF [Mycobacterium bovis
AF2122/97]
gi|121492965|emb|CAL71436.1| Putative integration host factor mihF [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124600694|gb|EAY59704.1| integration host factor mihF [Mycobacterium tuberculosis C]
gi|134149789|gb|EBA41834.1| integration host factor mihF [Mycobacterium tuberculosis str.
Haarlem]
gi|148505331|gb|ABQ73140.1| putative integration host factor MihF [Mycobacterium tuberculosis
H37Ra]
gi|148721135|gb|ABR05760.1| integration host factor mihF [Mycobacterium tuberculosis F11]
Length = 190
Score = 77.8 bits (190), Expect = 2e-13, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
+ LP LT EQRA ALEKAAAAR RA +K LK G L++ +E+D+VLGKMKV AL
Sbjct: 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
>gi|68536097|ref|YP_250802.1| putative integration host factor [Corynebacterium jeikeium K411]
gi|68263696|emb|CAI37184.1| putative integration host factor [Corynebacterium jeikeium K411]
Length = 106
Score = 77.4 bits (189), Expect = 2e-13, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 71/103 (68%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA AL+KAA AR RA ++ +LK G L + +ETD+ LGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALKKAAEARKARAELREKLKRGGTDLKQVLKDAETDETLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
LVSLP+VG A I+ + IAE+RR+RGLG QR AL+E FG
Sbjct: 61 LVSLPKVGKVKAKEIMEQLEIAETRRIRGLGDRQRRALLEHFG 103
>gi|25028283|ref|NP_738337.1| hypothetical protein CE1727 [Corynebacterium efficiens YS-314]
gi|23493567|dbj|BAC18537.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 106
Score = 76.3 bits (186), Expect = 5e-13, Method: Composition-based stats.
Identities = 55/103 (53%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQR AL KAA AR RA +K LK G L E +ETD+++GK KV AL
Sbjct: 1 MALPQLTDEQRKAALAKAAEARKARAELKENLKRGNTNLKEVLDKAETDEIIGKTKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA++RR+RGLG QR AL+ERFG
Sbjct: 61 LEALPKVGKVKAKEIMDELGIAQTRRLRGLGDRQRRALLERFG 103
>gi|152966937|ref|YP_001362721.1| hypothetical protein Krad_2993 [Kineococcus radiotolerans SRS30216]
gi|151361454|gb|ABS04457.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
Length = 118
Score = 76.3 bits (186), Expect = 5e-13, Method: Composition-based stats.
Identities = 62/103 (60%), Positives = 71/103 (68%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK L E + ++VLGKMKV AL
Sbjct: 1 MALPPLTAEQRAAALEKAAAARRERAAVKHRLKYTGGSLEEVIREGQENEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I+ ++ I+ESRRVRGLGA+Q AALVERFG
Sbjct: 61 LESLPNVGKVRAKHIMEEIGISESRRVRGLGAHQIAALVERFG 103
>gi|86741882|ref|YP_482282.1| putative integration host factor MihF [Frankia sp. CcI3]
gi|86568744|gb|ABD12553.1| putative integration host factor MihF [Frankia sp. CcI3]
Length = 105
Score = 75.9 bits (185), Expect = 7e-13, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRA ALEKAA AR RA +K LK E L+ +E D+V+GKMKV A+
Sbjct: 1 MPLPPLTPEQRAAALEKAALARKQRAELKERLKKAETTLAAVLEQAEADEVVGKMKVSAV 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I + I+ +RR+RGLGA QRAAL+E FG
Sbjct: 61 LESLPGVGRVRAQKIRERLGISPTRRLRGLGAKQRAALLEEFG 103
>gi|118617402|ref|YP_905734.1| integration host factor MihF [Mycobacterium ulcerans Agy99]
gi|118569512|gb|ABL04263.1| integration host factor MihF [Mycobacterium ulcerans Agy99]
Length = 105
Score = 75.9 bits (185), Expect = 7e-13, Method: Composition-based stats.
Identities = 59/103 (57%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L++ +ETD+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRSRAELKDRLKRGGTNLTQVLKDAETDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 103
>gi|145295729|ref|YP_001138550.1| hypothetical protein cgR_1656 [Corynebacterium glutamicum R]
gi|140845649|dbj|BAF54648.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 106
Score = 75.5 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/103 (52%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQR AL KAA AR RA +K LK G L E +E+D+++GK KV AL
Sbjct: 1 MALPQLTDEQRKAALAKAAEARKARAELKENLKRGNTNLKEVLDKAESDEIIGKTKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA++RR+RGLG QR AL+ERFG
Sbjct: 61 LEALPKVGKVKAKEIMDELGIAQTRRLRGLGDRQRRALLERFG 103
>gi|119716662|ref|YP_923627.1| hypothetical protein Noca_2435 [Nocardioides sp. JS614]
gi|119537323|gb|ABL81940.1| conserved hypothetical protein [Nocardioides sp. JS614]
Length = 108
Score = 75.5 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/103 (47%), Positives = 67/103 (65%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
+ LP LTPEQR ALEKAAA+R RA +K+ LK+ + + + ++V+GKM+V L
Sbjct: 3 VALPPLTPEQRQAALEKAAASRRERAEVKNRLKNSGASIVDVLQEGQRNEVIGKMRVVDL 62
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L S+P +G A ++ + IAESRRVRGLGA Q AAL + F
Sbjct: 63 LQSMPGLGKVRARQVMERLGIAESRRVRGLGAKQVAALEKEFA 105
>gi|38233915|ref|NP_939682.1| integration host factor [Corynebacterium diphtheriae NCTC 13129]
gi|38200176|emb|CAE49857.1| integration host factor [Corynebacterium diphtheriae]
Length = 107
Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/103 (51%), Positives = 71/103 (68%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQR +AL KAA AR RA +K +LK ++ L E + +D+++GK KV AL
Sbjct: 1 MALPKLTDEQRKEALAKAAEARKARAELKEQLKRSDITLKEVLDKASSDEIIGKTKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP+VG A I+ ++ IA++RR+RGLG QR AL+ERFG
Sbjct: 61 LESLPKVGKVKAKEIMEELEIAQTRRLRGLGDRQRRALLERFG 103
>gi|21219981|ref|NP_625760.1| hypothetical protein SCO1480 [Streptomyces coelicolor A3(2)]
gi|8249939|emb|CAB93360.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 107
Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/103 (57%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRA ALEKAAAAR RA +K+ LK L E + +DV+GKMKV AL
Sbjct: 1 MALPPLTPEQRAAALEKAAAARRERAEVKNRLKHSGASLHEVIKQGQENDVIGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I+ + I+ESRRVRGLG+NQ A+L FG
Sbjct: 61 LESLPGVGKVRAKQIMERLGISESRRVRGLGSNQIASLEREFG 103
>gi|19552819|ref|NP_600821.1| hypothetical protein NCgl1545 [Corynebacterium glutamicum ATCC
13032]
gi|62390490|ref|YP_225892.1| putative integration host factor cIHF [Corynebacterium glutamicum
ATCC 13032]
gi|21324376|dbj|BAB99000.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41325827|emb|CAF21616.1| putative integration host factor cIHF [Corynebacterium glutamicum
ATCC 13032]
Length = 106
Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/103 (52%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQR AL KAA AR RA +K LK G L E +E+D+++GK KV AL
Sbjct: 1 MALPQLTDEQRKAALAKAAEARKARAELKENLKRGNTNLREVLDKAESDEIIGKTKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA++RR+RGLG QR AL+ERFG
Sbjct: 61 LEALPKVGKVKAKEIMDELGIAQTRRLRGLGDRQRRALLERFG 103
>gi|41407220|ref|NP_960056.1| MIHF [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395571|gb|AAS03439.1| MIHF [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 111
Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/103 (57%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
+ LP LT EQRA ALEKAAAAR RA +K LK G LS+ +ETD+VLGKMKV AL
Sbjct: 8 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLSQVLKDAETDEVLGKMKVSAL 67
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 68 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 110
>gi|29833412|ref|NP_828046.1| hypothetical protein SAV6870 [Streptomyces avermitilis MA-4680]
gi|29610535|dbj|BAC74581.1| putative integration host factor [Streptomyces avermitilis MA-4680]
Length = 107
Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/103 (57%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRA ALEKAAAAR RA +K+ LK L E + +DV+GKMKV AL
Sbjct: 1 MALPPLTPEQRAAALEKAAAARRERAEVKNRLKHSGASLHEVIKQGQENDVIGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I+ + I+ESRRVRGLG+NQ A+L FG
Sbjct: 61 LESLPGVGKVRAKQIMERLGISESRRVRGLGSNQIASLEREFG 103
>gi|118462761|ref|YP_882568.1| MihF protein [Mycobacterium avium 104]
gi|118164048|gb|ABK64945.1| MihF protein [Mycobacterium avium 104]
Length = 104
Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/103 (58%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G LS+ +ETD+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLSQVLKDAETDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 103
>gi|111018336|ref|YP_701308.1| probable integration host factor [Rhodococcus sp. RHA1]
gi|110817866|gb|ABG93150.1| probable integration host factor [Rhodococcus sp. RHA1]
Length = 103
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 73/102 (71%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K +LKSG++ L + + ++ DD++GK KV A+
Sbjct: 1 MALPQLTDEQRAAALEKAAAARKARAELKDKLKSGDITLKQVLSKADVDDIIGKTKVSAI 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP++G A I+A++ IA +RR+RGLG QR AL+ F
Sbjct: 61 LEALPKIGKVKAQEIMANLEIAPTRRLRGLGDRQRDALLAHF 102
>gi|25005455|dbj|BAC23143.1| probable mIHF protein [Streptomyces kasugaensis]
Length = 107
Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 69/103 (66%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRA ALEKAAAAR RA +K+ LK L + + +DV+GKMKV AL
Sbjct: 1 MALPPLTPEQRAAALEKAAAARRERAEVKNRLKHSGASLHDVIKQGQENDVIGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L SLP VG A I+ + I+ESRRVRGLG+NQ A+L FG
Sbjct: 61 LESLPGVGKVRAKQIMERLGISESRRVRGLGSNQIASLEREFG 103
>gi|145224323|ref|YP_001135001.1| MihF [Mycobacterium gilvum PYR-GCK]
gi|145216809|gb|ABP46213.1| MihF [Mycobacterium gilvum PYR-GCK]
Length = 105
Score = 73.6 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/102 (57%), Positives = 72/102 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L + T +ETD+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLTDAETDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+F
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 102
>gi|118473958|ref|YP_887366.1| integration host factor [Mycobacterium smegmatis str. MC2 155]
gi|1857251|gb|AAC28246.1| integration host factor [Mycobacterium smegmatis]
gi|118175245|gb|ABK76141.1| integration host factor [Mycobacterium smegmatis str. MC2 155]
Length = 105
Score = 73.2 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 59/102 (57%), Positives = 72/102 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L + T +ETD+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLTDAETDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+F
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 102
>gi|81254669|ref|ZP_00879181.1| hypothetical protein MtubC_01001188 [Mycobacterium tuberculosis C]
Length = 105
Score = 72.0 bits (175), Expect = 9e-12, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L++ +E+D+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 103
>gi|15827196|ref|NP_301459.1| putative integration host factor [Mycobacterium leprae TN]
gi|13092744|emb|CAC30048.1| putative integration host factor [Mycobacterium leprae]
Length = 105
Score = 72.0 bits (175), Expect = 9e-12, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L++ +E+D+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 61 LEALPKVGKVKAQEIMTELDIAPTRRLRGLGERQRKALLEKFG 103
>gi|120403650|ref|YP_953479.1| MihF [Mycobacterium vanbaalenii PYR-1]
gi|119956468|gb|ABM13473.1| MihF [Mycobacterium vanbaalenii PYR-1]
Length = 105
Score = 72.0 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/102 (56%), Positives = 71/102 (69%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L + +ETD+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLKDAETDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+F
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 102
>gi|15840847|ref|NP_335884.1| mIHF [Mycobacterium tuberculosis CDC1551]
gi|13881046|gb|AAK45698.1| mIHF [Mycobacterium tuberculosis CDC1551]
Length = 111
Score = 71.6 bits (174), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 73/103 (70%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
+ LP LT EQRA ALEKAAAAR RA +K LK G L++ +E+D+VLGKMKV AL
Sbjct: 7 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 66
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+FG
Sbjct: 67 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 109
>gi|108799336|ref|YP_639533.1| MIHF [Mycobacterium sp. MCS]
gi|119868452|ref|YP_938404.1| MihF [Mycobacterium sp. KMS]
gi|126434994|ref|YP_001070685.1| MihF [Mycobacterium sp. JLS]
gi|108769755|gb|ABG08477.1| MIHF [Mycobacterium sp. MCS]
gi|119694541|gb|ABL91614.1| MihF [Mycobacterium sp. KMS]
gi|126234794|gb|ABN98194.1| MihF [Mycobacterium sp. JLS]
Length = 105
Score = 71.2 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/102 (56%), Positives = 71/102 (69%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L + +ETD+VLGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLKDAETDEVLGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+E+F
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 102
>gi|111024104|ref|YP_707076.1| probable integration host factor [Rhodococcus sp. RHA1]
gi|110823634|gb|ABG98918.1| probable integration host factor [Rhodococcus sp. RHA1]
Length = 106
Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/102 (54%), Positives = 69/102 (67%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L + +E D++LGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARKARAELKERLKRGGTDLKQVLKDAEDDEILGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP+VG A I+ ++ IA +RR+RGLG QR AL+ RF
Sbjct: 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLARF 102
>gi|111224605|ref|YP_715399.1| putative integration host factor-like protein (partial); putative
coiled-coil domain [Frankia alni ACN14a]
gi|111152137|emb|CAJ63865.1| putative integration host factor-like protein (partial); putative
coiled-coil domain [Frankia alni ACN14a]
Length = 112
Score = 70.1 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/110 (52%), Positives = 69/110 (62%), Gaps = 7/110 (6%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGK------ 54
M LP LTPEQRA ALEKAA AR RA +K LK E L+ +E D+V+GK
Sbjct: 1 MPLPPLTPEQRAAALEKAALARKQRAELKERLKKAETTLAAVLEQAEADEVVGKIDEVVG 60
Query: 55 -MKVRALLVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERFG 103
MKV A+L SLP VG A I + I+ +RR+RGLGA QRAAL+E FG
Sbjct: 61 KMKVSAVLESLPGVGRVRAQKIRERLGISPTRRLRGLGAKQRAALLEEFG 110
>gi|111025392|ref|YP_707812.1| probable integration host factor [Rhodococcus sp. RHA1]
gi|110824371|gb|ABG99654.1| probable integration host factor [Rhodococcus sp. RHA1]
Length = 105
Score = 69.3 bits (168), Expect = 6e-11, Method: Composition-based stats.
Identities = 53/100 (53%), Positives = 72/100 (72%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LTPEQRA+AL KAA AR R+ + S +K+G+L + T +ETD+++ K KV AL
Sbjct: 1 MALPVLTPEQRAEALAKAAEARKARSELLSAVKAGDLSVEAVLTKAETDEIVKKTKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVE 100
L +LP VG+ A +L ++ IAE+RR+ GLGANQR AL+E
Sbjct: 61 LKALPGVGSVKAAKLLEELSIAETRRIGGLGANQRQALIE 100
>gi|54025587|ref|YP_119829.1| putative integration host factor [Nocardia farcinica IFM 10152]
gi|54017095|dbj|BAD58465.1| putative integration host factor [Nocardia farcinica IFM 10152]
Length = 106
Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/102 (55%), Positives = 70/102 (68%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQRA ALEKAAAAR RA +K LK G L +ETD++LGKMKV AL
Sbjct: 1 MALPQLTDEQRAAALEKAAAARRARAELKERLKRGGTDLKSVLADAETDEILGKMKVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP+VG A I++++ IA +RR+RGLG QR AL+ RF
Sbjct: 61 LEALPKVGKVKAAEIMSELEIAPTRRLRGLGDRQRKALLARF 102
>gi|50842669|ref|YP_055896.1| integration host factor [Propionibacterium acnes KPA171202]
gi|50840271|gb|AAT82938.1| integration host factor [Propionibacterium acnes KPA171202]
Length = 106
Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 64/102 (62%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M++PTL+PEQ + A E A AR RA K++++SG + LSE + D+VL +KV L
Sbjct: 1 MSIPTLSPEQLSAAREAATRARRVRADFKAKVRSGNITLSEALDKAANDEVLAHVKVVDL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LPRVG A I+ + IA +RR+RGLG +Q A L F
Sbjct: 61 LKALPRVGDKRAAEIMEHLEIAPNRRIRGLGHHQIAGLRAEF 102
>gi|119960938|ref|YP_948003.1| putative integration host factor (mIHF) [Arthrobacter aurescens
TC1]
gi|119947797|gb|ABM06708.1| putative integration host factor (mIHF) [Arthrobacter aurescens
TC1]
Length = 116
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/98 (46%), Positives = 67/98 (68%)
Query: 3 LPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRALLV 62
L LTP++R+ ALEKAA AR+ RA K LK GE+ ++E ++ TD+ + +M+V LL
Sbjct: 11 LKELTPQERSAALEKAAKARAVRAAAKERLKRGEVSVAELISSGSTDEAIARMRVVELLE 70
Query: 63 SLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVE 100
+LP +G A I+A++ IA SRR+RGLG +Q ALV+
Sbjct: 71 ALPGIGPVRAAGIMAEIGIAGSRRIRGLGIHQARALVD 108
>gi|116670807|ref|YP_831740.1| putative integration host factor IHF [Arthrobacter sp. FB24]
gi|116610916|gb|ABK03640.1| putative integration host factor IHF [Arthrobacter sp. FB24]
Length = 116
Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M+L LT ++RA+AL KAAAAR+ RA K +LKSG L ++E T+ + + L +MKV +
Sbjct: 1 MSLRPLTDQERAEALGKAAAARAARAEAKEQLKSGTLSVAELLTSGDGNSALARMKVSEM 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVE 100
L ++P +G TA AI+ ++ IA SRR+RGLG +QR ALV+
Sbjct: 61 LEAMPGIGRVTAAAIMDELGIAASRRLRGLGIHQRRALVD 100
>gi|54023305|ref|YP_117547.1| putative integration host factor [Nocardia farcinica IFM 10152]
gi|54014813|dbj|BAD56183.1| putative integration host factor [Nocardia farcinica IFM 10152]
Length = 104
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 67/100 (67%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LPT+T EQR +AL KAAA R R+ + ++K+G++ +++ +++DD++ K KV A+
Sbjct: 1 MALPTMTAEQRTEALAKAAAVRKARSELIGKVKAGKVSVADLLAKADSDDLVKKTKVAAV 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVE 100
+ +LP VG A ++ I E RR+ GLGA QRAAL+E
Sbjct: 61 IKALPGVGPVKAAKLMDQAEIPEDRRIGGLGARQRAALLE 100
>gi|134098669|ref|YP_001104330.1| putative integration host factor [Saccharopolyspora erythraea NRRL
2338]
gi|133911292|emb|CAM01405.1| putative integration host factor [Saccharopolyspora erythraea NRRL
2338]
Length = 106
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 54/102 (52%), Positives = 67/102 (65%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
+ LP LT EQRA ALEKAAAAR RA +K LK G L++ ++ ++VLGKMKV AL
Sbjct: 2 VALPQLTEEQRAAALEKAAAARRARAELKERLKRGGTSLAQVLQDADENEVLGKMKVSAL 61
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP VG A I+ + IA SRR+RGLG QR AL+ F
Sbjct: 62 LEALPGVGKVRAQQIMERLEIANSRRLRGLGERQRKALLAEF 103
>gi|139439780|ref|ZP_01773171.1| Hypothetical protein COLAER_02202 [Collinsella aerofaciens ATCC
25986]
gi|133774930|gb|EBA38750.1| Hypothetical protein COLAER_02202 [Collinsella aerofaciens ATCC
25986]
Length = 102
Score = 59.7 bits (143), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQR QALEKAAAAR RA ++ ++K GE L + D + +MKV L
Sbjct: 1 MALPQLTDEQRKQALEKAAAARHARAELREQIKKGEKSLESVLNSD--DPIASRMKVSTL 58
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
+ SLP G A I+ ++ I+ +RRV+GLG QR L+E+
Sbjct: 59 IESLPGYGKAKAAKIMEELGISATRRVQGLGVRQREQLLEQL 100
>gi|139439591|ref|ZP_01773004.1| Hypothetical protein COLAER_02031 [Collinsella aerofaciens ATCC
25986]
gi|133774932|gb|EBA38752.1| Hypothetical protein COLAER_02031 [Collinsella aerofaciens ATCC
25986]
Length = 103
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP LT EQR QALEKAAAAR RA ++ ++K GE L + D + +MKV L
Sbjct: 2 MALPQLTDEQRKQALEKAAAARHARAELREQIKKGEKSLESVLNSD--DPIASRMKVSTL 59
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
+ SLP G A I+ ++ I+ +RRV+GLG QR L+E+
Sbjct: 60 IESLPGYGKAKAAKIMEELGISATRRVQGLGVRQREQLLEQL 101
>gi|117928501|ref|YP_873052.1| putative integration host factor MihF [Acidothermus cellulolyticus
11B]
gi|117648964|gb|ABK53066.1| putative integration host factor MihF [Acidothermus cellulolyticus
11B]
Length = 113
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/102 (49%), Positives = 65/102 (63%)
Query: 1 MTLPTLTPEQRAQALEKAAAARSHRARIKSELKSGELKLSEFFTASETDDVLGKMKVRAL 60
M LP L+ QRA+AL KAAAAR+ RA ++ LK E L+ + D+V+G+M+V AL
Sbjct: 1 MPLPPLSASQRAEALAKAAAARARRAELRDRLKRSEESLAAILALGQDDEVVGRMRVSAL 60
Query: 61 LVSLPRVGTTTADAILADVHIAESRRVRGLGANQRAALVERF 102
L +LP +G A I+ + IA SRRVRGLG QR ALV F
Sbjct: 61 LQALPGIGRARAAQIMERLGIAASRRVRGLGPRQREALVAEF 102
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.317 0.129 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,635,351
Number of Sequences: 5470121
Number of extensions: 8847619
Number of successful extensions: 34852
Number of sequences better than 1.0e-05: 42
Number of HSP's better than 0.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34809
Number of HSP's gapped (non-prelim): 42
length of query: 103
length of database: 1,894,087,724
effective HSP length: 72
effective length of query: 31
effective length of database: 1,500,239,012
effective search space: 46507409372
effective search space used: 46507409372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)