BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 


RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  'E11C01_E01_05.ab1'
        (445 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 3 Sequences     : less than 3 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 788 184 |=============================================================
   6310 604 145 |================================================
   3980 459 110 |====================================
   2510 349  79 |==========================
   1580 270  87 |=============================
   1000 183  66 |======================
    631 117  31 |==========
    398  86  17 |=====
    251  69  22 |=======
    158  47   9 |===
    100  38   4 |=
   63.1  34   5 |=
   39.8  29   5 |=
   25.1  24   4 |=
   15.8  20   7 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 13  <<<<<<<<<<<<<<<<<
   10.0  13   1 |:
   6.31  12   4 |=
   3.98   8   3 |=
   2.51   5   3 |=
   1.58   2   1 |:
   1.00   1   0 |
   0.63   1   0 |
   0.40   1   0 |
   0.25   1   0 |
   0.16   1   0 |
   0.10   1   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|6097875|dbj|BAA85749.1|(AB033600) glyceraldehyde-3... +3    78  0.090     1
gi|3513986|gb|AAC34080.1|(AF082640) glyceraldehyde-3-... +3    66  0.71      1
gi|3513998|gb|AAC34086.1|(AF082646) glyceraldehyde-3-... +3    65  0.80      1
gi|3514010|gb|AAC34092.1|(AF082652) glyceraldehyde-3-... +3    65  0.80      1
gi|5678779|gb|AAD46735.1|(AF136119) glyceraldehyde 3-... +3    77  0.86      1
gi|462141|sp|P34783|G3P_ATRNUGLYCERALDEHYDE 3-PHOSPHA... +3    83  0.94      1
gi|3435286|gb|AAC32382.1|(AF082597) cytosolic glycera... +3    74  0.97      1
gi|3435290|gb|AAC32384.1|(AF082599) cytosolic glycera... +3    74  0.97      1
gi|1170337|sp|P05205|HP1_DROMEHETEROCHROMATIN PROTEIN... +3    78  0.991     1
gi|9967539|emb|CAC05663.1|(AJ278316) glyceraldehyde-3... +3    61  0.991     1
gi|3435288|gb|AAC32383.1|(AF082598) cytosolic glycera... +3    73  0.993     1
gi|120667|sp|P25858|G3PC_ARATHGLYCERALDEHYDE 3-PHOSPH... +3    80  0.998     1
gi|6325401ref|NP_015468.1| Ypr142cp [Saccharomyces ce... -1    76  0.999     1



Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.



to_Entrezto_Relatedto_Related >gi|6097875|dbj|BAA85749.1|  (AB033600) glyceraldehyde-3-phosphate dehydrogenase
            [Cucumis melo]
            Length = 108

Frame  3 hits (HSPs):           ____________________________________      
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 108
                       0       20        40       60       80      100

  Plus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 0.095, P = 0.090
 Identities = 27/76 (35%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKV--AKKRKISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  A   K++  S  +PT+ + + D     E  A  E I   +K E  GK+ 
Sbjct:    19 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAASYEDIKAAIKEESEGKLK 78

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  ++EFV
Sbjct:    79 GILGYTEDDVVSSEFV 94


to_Entrezto_Relatedto_Related >gi|3513986|gb|AAC34080.1|  (AF082640) glyceraldehyde-3-phosphate dehydrogenase
            [Leavenworthia crassa] >gi|3513988|gb|AAC34081.1| (AF082641)
            glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia crassa]
            >gi|3513990|gb|AAC34082.1| (AF082642) glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia crassa] >gi|3513992|gb|AAC34083.1|
            (AF082643) glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia
            crassa] >gi|3513994|gb|AAC34084.1| (AF082644)
            glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia crassa]
            >gi|3513996|gb|AAC34085.1| (AF082645) glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia crassa]
            Length = 79

Frame  3 hits (HSPs):         __________________________________          
                        __________________________________________________
Database sequence:     |            |           |            |            | 79
                       0           20          40           60

  Plus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 1.2, P = 0.71
 Identities = 18/53 (33%), Positives = 28/53 (52%), Frame = +3

Query:    90 LPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMMALLTYT-DDREATEFV 245
             +PT+ + + D     E  A  + I   +K E  GK+  +L YT DD  +T+FV
Sbjct:    11 VPTVDVSVVDLTVRIEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFV 63


to_Entrezto_Relatedto_Related >gi|3513998|gb|AAC34086.1|  (AF082646) glyceraldehyde-3-phosphate dehydrogenase
            [Leavenworthia crassa] >gi|3514000|gb|AAC34087.1| (AF082647)
            glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia crassa]
            >gi|3514002|gb|AAC34088.1| (AF082648) glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia crassa] >gi|3514004|gb|AAC34089.1|
            (AF082649) glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia
            stylosa] >gi|3514006|gb|AAC34090.1| (AF082650)
            glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia stylosa]
            >gi|3514008|gb|AAC34091.1| (AF082651) glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia stylosa] >gi|3514012|gb|AAC34093.1|
            (AF082653) glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia
            stylosa] >gi|3514014|gb|AAC34094.1| (AF082654)
            glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia stylosa]
            >gi|3514016|gb|AAC34095.1| (AF082655) glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia torulosa] >gi|3514018|gb|AAC34096.1|
            (AF082656) glyceraldehyde-3-phosphate dehydrogenase [Leavenworthia
            uniflora]
            Length = 79

Frame  3 hits (HSPs):         __________________________________          
                        __________________________________________________
Database sequence:     |            |           |            |            | 79
                       0           20          40           60

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 1.6, P = 0.80
 Identities = 17/53 (32%), Positives = 28/53 (52%), Frame = +3

Query:    90 LPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMMALLTYT-DDREATEFV 245
             +PT+ + + D     E  A  + I   +K E  GK+  +L YT DD  +T+F+
Sbjct:    11 VPTVDVSVVDLTVRIEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFI 63


to_Entrezto_Relatedto_Related >gi|3514010|gb|AAC34092.1|  (AF082652) glyceraldehyde-3-phosphate dehydrogenase
            [Leavenworthia stylosa]
            Length = 79

Frame  3 hits (HSPs):         __________________________________          
                        __________________________________________________
Database sequence:     |            |           |            |            | 79
                       0           20          40           60

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 1.6, P = 0.80
 Identities = 17/53 (32%), Positives = 28/53 (52%), Frame = +3

Query:    90 LPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMMALLTYT-DDREATEFV 245
             +PT+ + + D     E  A  + I   +K E  GK+  +L YT DD  +T+F+
Sbjct:    11 VPTVDVSVVDLTVRIEKAATYDEIKKAIKEESEGKLKGILGYTEDDIVSTDFI 63


to_Entrezto_Relatedto_Related >gi|5678779|gb|AAD46735.1|  (AF136119) glyceraldehyde 3-phosphate dehydrogenase
            [Manihot esculenta] >gi|5678780|gb|AAD46736.1| (AF136120)
            glyceraldehyde 3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678781|gb|AAD46737.1| (AF136121) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678782|gb|AAD46738.1|
            (AF136122) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            esculenta] >gi|5678783|gb|AAD46739.1| (AF136123) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678784|gb|AAD46740.1| (AF136124) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot pruinosa] >gi|5678785|gb|AAD46741.1|
            (AF136125) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            pruinosa] >gi|5678786|gb|AAD46742.1| (AF136126) glyceraldehyde
            3-phosphate dehydrogenase [Manihot pruinosa]
            >gi|5678787|gb|AAD46743.1| (AF136127) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678788|gb|AAD46744.1|
            (AF136128) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            esculenta] >gi|5678789|gb|AAD46745.1| (AF136129) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678790|gb|AAD46746.1| (AF136130) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot pruinosa] >gi|5678791|gb|AAD46747.1|
            (AF136131) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            pruinosa] >gi|5678792|gb|AAD46748.1| (AF136132) glyceraldehyde
            3-phosphate dehydrogenase [Manihot pruinosa]
            >gi|5678793|gb|AAD46749.1| (AF136133) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678794|gb|AAD46750.1|
            (AF136134) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            pruinosa] >gi|5678795|gb|AAD46751.1| (AF136135) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678796|gb|AAD46752.1| (AF136136) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678797|gb|AAD46753.1|
            (AF136137) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            esculenta] >gi|5678798|gb|AAD46754.1| (AF136138) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678799|gb|AAD46755.1| (AF136139) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678800|gb|AAD46756.1|
            (AF136140) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            esculenta] >gi|5678802|gb|AAD46758.1| (AF136142) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678803|gb|AAD46759.1| (AF136143) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678804|gb|AAD46760.1|
            (AF136144) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            esculenta] >gi|5678805|gb|AAD46761.1| (AF136145) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678806|gb|AAD46762.1| (AF136146) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta] >gi|5678807|gb|AAD46763.1|
            (AF136147) glyceraldehyde 3-phosphate dehydrogenase [Manihot
            esculenta] >gi|5678808|gb|AAD46764.1| (AF136148) glyceraldehyde
            3-phosphate dehydrogenase [Manihot esculenta]
            >gi|5678809|gb|AAD46765.1| (AF136149) glyceraldehyde 3-phosphate
            dehydrogenase [Manihot esculenta]
            Length = 137

Frame  3 hits (HSPs):                   _____________________________     
                        __________________________________________________
Database sequence:     |                 |                  |             | 137
                       0                50                100

  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 2.0, P = 0.86
 Identities = 26/76 (34%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKV--AKKRKISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  A   K++  +  +PT+ + + D     E  A  E I   +K E  GK+ 
Sbjct:    47 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKKATYEEIKNAIKEESEGKLK 106

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  +T+FV
Sbjct:   107 GILGYTEDDVVSTDFV 122


to_Entrezto_Relatedto_Relatedto_ec >gi|462141|sp|P34783|G3P_ATRNU  GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1085816|pir||S38570 glyceraldehyde-3-phosphate dehydrogenase
            (EC 1.2.1.12) - Atriplex nummularia >gi|409575|gb|AAA03442.1|
            (U02886) glyceraldehyde-3-phosphate dehydrogenase [Atriplex
            nummularia] >gi|414607|emb|CAA53269.1| (X75597)
            glyceraldehyde-3-phosphate dehydrogenase [Atriplex nummularia]
            Length = 360

Frame  3 hits (HSPs):                                ____________         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                    |        | 360
                       0                  150                  300
__________________

Annotated Domains:
   DOMO                 DM00113: GLYCERALDEHYDE-3-PHOSPHATEDEHYD 3..334
   Entrez               binding site: GLYCERALDEHYDE 3-PHOSPHATE 154
   Entrez               active site: ACTIVATES THIOL GROUP DURIN 181
   PFAM                 gpdh: glyceraldehyde 3-phosphate dehydro 2..339
   PRINTS               G3PDHDRGNASE1: Glyceraldehyde-3-phosphat 113..126
   PRINTS               G3PDHDRGNASE2: Glyceraldehyde-3-phosphat 148..166
   PRINTS               G3PDHDRGNASE3: Glyceraldehyde-3-phosphat 175..191
   PRINTS               G3PDHDRGNASE4: Glyceraldehyde-3-phosphat 232..249
   PRINTS               G3PDHDRGNASE5: Glyceraldehyde-3-phosphat 272..287
   PRODOM               PD000269: G3P(69) G3PC(23) G3P2(13)      4..34
   PRODOM               PD000255: G3P(69) G3PC(23) G3P1(14)      43..119
   PRODOM               PD000250: G3P(69) G3PC(23) G3P1(13)      121..157
   PRODOM               PD000244: G3P(69) G3PC(23) G3P1(13)      159..252
   PRODOM               PD000248: G3P(69) G3PC(23) G3P2(13)      256..334
   PRODOM               PD060425: G3P_ATRNU                      336..359
   PROSITE              GAPDH: Glyceraldehyde 3-phosphate dehydr 152..159
__________________


  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 2.8, P = 0.94
 Identities = 28/76 (36%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKV--AKKRKISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  A   K++  S  +PT+ + + D     E  A  E I   +K E  GKM 
Sbjct:   214 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMK 273

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  +T+FV
Sbjct:   274 GILGYTEDDVVSTDFV 289


to_Entrezto_Relatedto_Related >gi|3435286|gb|AAC32382.1|  (AF082597) cytosolic glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia crassa]
            Length = 125

Frame  3 hits (HSPs):          _______________________________            
                        __________________________________________________
Database sequence:     |                   |                   |          | 125
                       0                  50                 100

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 3.4, P = 0.97
 Identities = 25/76 (32%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKVAKKR--KISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  +   K++  S  +PT+ + + D     E  A  + I   +K E  GK+ 
Sbjct:    19 GAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRIEKAATYDEIKKAIKEESEGKLK 78

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  +T+FV
Sbjct:    79 GILGYTEDDVVSTDFV 94


to_Entrezto_Relatedto_Related >gi|3435290|gb|AAC32384.1|  (AF082599) cytosolic glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia uniflora] >gi|3435292|gb|AAC32385.1|
            (AF082600) cytosolic glyceraldehyde-3-phosphate dehydrogenase
            [Leavenworthia crassa]
            Length = 125

Frame  3 hits (HSPs):          _______________________________            
                        __________________________________________________
Database sequence:     |                   |                   |          | 125
                       0                  50                 100

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 3.4, P = 0.97
 Identities = 25/76 (32%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKV--AKKRKISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  +   K++  S  +PT+ + + D     E  A  + I   +K E  GK+ 
Sbjct:    19 GAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKAATYDEIKKAIKEESEGKLK 78

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  +T+FV
Sbjct:    79 GILGYTEDDVVSTDFV 94


to_Entrezto_Relatedto_Related >gi|1170337|sp|P05205|HP1_DROME  HETEROCHROMATIN PROTEIN 1 (HP1) (NONHISTONE
            CHROMOSOMAL PROTEIN C1A9 ANTIGEN) >gi|103192|pir||A39268
            heterochromatin protein 1 - fruit fly (Drosophila melanogaster)
            >gi|157641|gb|AAA28620.1| (M57574) heterochromatin-specific
            chromosomal protein HP-1 [Drosophila melanogaster]
            >gi|7297358|gb|AAF52618.1| (AE003620) Su(var)205 gene product
            [Drosophila melanogaster]
            Length = 206

Frame  3 hits (HSPs):                             _______________________ 
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |           |            |           |           | | 206
                       0          50          100         150         200
__________________

Annotated Domains:
   DOMO                 DM00963: CHROMODOMAIN                    13..184
   Entrez               Domain: POLY-GLU.                        18..23
   Entrez               Domain: CHROMO DOMAIN.                   24..82
   Entrez               Domain: CHROMO SHADOW DOMAIN.            147..205
   PFAM                 chromo: 'chromo' (CHRromatin Organizatio 21..61
   PFAM                 Chromo_shadow: Chromo shadow domain      145..202
   PRINTS               CHROMODOMAIN1: Chromodomain motif I - 4  21..29
   PRINTS               CHROMODOMAIN2: Chromodomain motif II - 4 34..48
   PRINTS               CHROMODOMAIN3: Chromodomain motif III -  49..61
   PRODOM               PD001389: CHD1(6) CBX5(2) CBX3(2)        21..60
   PRODOM               PD029440: HP1(2)                         62..103
   PRODOM               PD006629: CBX3(2) CBX5(2) HP1(2)         106..197
   PROSITE              CHROMO_1: Chromo domain signature.       41..61
__________________


  Plus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 4.7, P = 0.99
 Identities = 27/97 (27%), Positives = 51/97 (52%), Frame = +3

Query:    33 RKKSSGKVA---KKRKISSDSTLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMMA 203
             ++KS    A    K K ++D+   TIP+     +   + G   E I+G    + +G++  
Sbjct:   110 KRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGF---DRGLEAEKILGAS--DNNGRLTF 164

Query:   204 LLTYTDDREATEFVPTELLLENKLTAKMILNFYEIRLQFY 323
             L+ +    +A E VP+ +   N+   +M+++FYE RL +Y
Sbjct:   165 LIQFKGVDQA-EMVPSSVA--NEKIPRMVIHFYEERLSWY 201


to_Entrezto_Relatedto_Related >gi|9967539|emb|CAC05663.1|  (AJ278316) glyceraldehyde-3-phosphate dehydrogenase
            [Gilbertella persicaria]
            Length = 80

Frame  3 hits (HSPs):             _______________________________________ 
                        __________________________________________________
Database sequence:     |           |            |           |             | 80
                       0          20           40          60

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 4.8, P = 0.99
 Identities = 18/61 (29%), Positives = 30/61 (49%), Frame = +3

Query:   135 EDGAVPEHIIGVMKHEESGKMMALLTYTDDRE-ATEFV--PTELLLENKLTAKMILNFYE 305
             E GA  + I  V+K    G +  +L YT+D   +T+FV  P   + + K    +  NF +
Sbjct:    18 EKGASYDDIKRVVKEASEGALKGVLEYTEDEVVSTDFVGHPASSIFDAKAGIALNPNFVK 77

Query:   306 I 308
             +
Sbjct:    78 L 78


to_Entrezto_Relatedto_Related >gi|3435288|gb|AAC32383.1|  (AF082598) cytosolic glyceraldehyde-3-phosphate
            dehydrogenase [Leavenworthia stylosa]
            Length = 125

Frame  3 hits (HSPs):          _______________________________            
                        __________________________________________________
Database sequence:     |                   |                   |          | 125
                       0                  50                 100

  Plus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 4.9, P = 0.99
 Identities = 24/76 (31%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKVAKKR--KISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  +   K++  S  +PT+ + + D     E  A  + I   +K E  GK+ 
Sbjct:    19 GAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRIEKAATYDEIKKAIKEESEGKLK 78

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  +T+F+
Sbjct:    79 GILGYTEDDVVSTDFI 94


to_Entrezto_Relatedto_Relatedto_ec >gi|120667|sp|P25858|G3PC_ARATH  GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE,
            CYTOSOLIC >gi|81622|pir||JQ1287 glyceraldehyde-3-phosphate
            dehydrogenase (EC 1.2.1.12), cytosolic - Arabidopsis thaliana
            >gi|166706|gb|AAA32794.1| (M64116) cystolic
            glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana]
            >gi|166710|gb|AAA32796.1| (M64119) glyceraldehyde-3-phosphate
            dehydrogenase [Arabidopsis thaliana]
            Length = 338

Frame  3 hits (HSPs):                                  ____________       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300
__________________

Annotated Domains:
   BLOCKS               BL00071A: Glyceraldehyde 3-phosphate deh 7..18
   BLOCKS               BL00071B: Glyceraldehyde 3-phosphate deh 84..129
   BLOCKS               BL00071C: Glyceraldehyde 3-phosphate deh 150..184
   BLOCKS               BL00071D: Glyceraldehyde 3-phosphate deh 187..241
   BLOCKS               BL00071E: Glyceraldehyde 3-phosphate deh 311..331
   Entrez               binding site: GLYCERALDEHYDE 3-PHOSPHATE 156
   Entrez               active site: ACTIVATES THIOL GROUP DURIN 183
   PFAM                 gpdh: glyceraldehyde 3-phosphate dehydro 5..338
   PRINTS               G3PDHDRGNASE1: Glyceraldehyde-3-phosphat 115..128
   PRINTS               G3PDHDRGNASE2: Glyceraldehyde-3-phosphat 150..168
   PRINTS               G3PDHDRGNASE3: Glyceraldehyde-3-phosphat 177..193
   PRINTS               G3PDHDRGNASE4: Glyceraldehyde-3-phosphat 234..251
   PRINTS               G3PDHDRGNASE5: Glyceraldehyde-3-phosphat 274..289
   PRODOM               PD000269: G3P(69) G3PC(23) G3P2(13)      6..36
   PRODOM               PD000255: G3P(69) G3PC(23) G3P1(14)      45..121
   PRODOM               PD000250: G3P(69) G3PC(23) G3P1(13)      123..159
   PRODOM               PD000244: G3P(69) G3PC(23) G3P1(13)      161..254
   PRODOM               PD000248: G3P(69) G3PC(23) G3P2(13)      258..336
   PROSITE              GAPDH: Glyceraldehyde 3-phosphate dehydr 154..161
__________________


  Plus Strand HSPs:

 Score = 80 (28.2 bits), Expect = 6.1, P = 1.0
 Identities = 27/76 (35%), Positives = 39/76 (51%), Frame = +3

Query:    30 GRKKSSGKV--AKKRKISSDS-TLPTIPLVLKDRYHIGEDGAVPEHIIGVMKHEESGKMM 200
             G  K+ GKV  A   K++  S  +PT+ + + D     E  A  E I   +K E  GK+ 
Sbjct:   216 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYEEIKKAIKEESEGKLK 275

Query:   201 ALLTYT-DDREATEFV 245
              +L YT DD  +T+FV
Sbjct:   276 GILGYTEDDVVSTDFV 291


to_Entrezto_Related >gi|6325401  ref|NP_015468.1| Ypr142cp [Saccharomyces cerevisiae]
            >gi|2132300|pir||S69466 hypothetical protein YPR142c - yeast
            (Saccharomyces cerevisiae) >gi|2347172|gb|AAB68293.1| (U40829)
            Ypr142cp [Saccharomyces cerevisiae]
            Length = 187

Frame -1 hits (HSPs):            _____________________                    
                        __________________________________________________
Database sequence:     |             |            |            |          | 187
                       0            50          100          150

  Minus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 6.9, P = 1.0
 Identities = 35/83 (42%), Positives = 48/83 (57%), Frame = -1

Query:   283 FAVSLFSSSNSVGTNSVASLSSV*VKRAIILPDSSCFMTPMICSGTAPSSPMW*RSFSTS 104
             F +   SSS+S  ++S ASL S+    +IIL DSS     + CS ++ SSP    SFS S
Sbjct:    37 FFLGKSSSSSSSSSSSSASLCSL----SIILDDSSL---ELFCSSSSASSPSIIVSFSGS 89

Query:   103 GIVGSVESLEIFLFL----ATFPLLFL 35
              ++ S   L +FLF     A F +LFL
Sbjct:    90 -LLNSW--LPLFLFSRPNSAFFLVLFL 113


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.96

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.339   0.152   0.463  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.339   0.147   0.497  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.360   0.158   0.554  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.356   0.156   0.557  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.354   0.160   0.557  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.362   0.160   0.574  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      147       145       10.  74 3  12 22  0.12    33
                                                    30  0.11    36
   +2      0      148       146       10.  74 3  12 22  0.12    33
                                                    30  0.11    36
   +1      0      148       147       10.  74 3  12 22  0.12    33
                                                    30  0.11    36
   -1      0      148       146       10.  74 3  12 22  0.12    33
                                                    30  0.11    36
   -2      0      148       146       10.  74 3  12 22  0.12    33
                                                    30  0.11    36
   -3      0      147       146       10.  74 3  12 22  0.12    33
                                                    30  0.11    36


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  13
  No. of states in DFA:  580 (57 KB)
  Total size of DFA:  166 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  140.64u 1.24s 141.88t  Elapsed: 00:00:25
  Total cpu time:  140.67u 1.26s 141.93t  Elapsed: 00:00:25
  Start:  Wed Jan 23 15:41:31 2002   End:  Wed Jan 23 15:41:56 2002



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000