R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|11357289|pir||T51471 farnesylated protein ATFP6-like protein - Arabidopsis
thaliana >gi|9755769|emb|CAC01889.1| (AL391150) farnesylated
protein ATFP6-like protein [Arabidopsis thaliana]
Length = 149
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
Plus Strand HSPs:
Score = 338 (119.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 66/98 (67%), Positives = 79/98 (80%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDKR 205
GVKSVE+NRKQSR+TVNG VDPNKVL RVK TGKK AEFWPY+PQH+V YP A G+YDKR
Sbjct: 52 GVKSVEVNRKQSRITVNGHVDPNKVLKRVKSTGKK-AEFWPYIPQHMVYYPFAPGMYDKR 110
Query: 206 APGGYVXN-VQTFAASADTEXKFMSLFXEDNVNA-CSIM 316
AP G++ N Q+F + E ++SLF +DNV+A CSIM
Sbjct: 111 APAGHIRNPTQSFPTANAPEENYVSLFSDDNVHAACSIM 149
>gi|4097555|gb|AAD09511.1| (U64910) ATFP7 [Arabidopsis thaliana]
Length = 112
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | 112
0 50 100
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 7.3e-26, P = 7.3e-26
Identities = 57/100 (57%), Positives = 72/100 (72%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYD 199
+ G KSVE+NRK +VTV+G VDP KVL V+ TGKKKAE WPYVP +V YP+A+G YD
Sbjct: 13 IKGAKSVEVNRKMHKVTVSGYVDPKKVLKTVQNTGKKKAELWPYVPYTMVAYPYAAGAYD 72
Query: 200 KRAPGGYVX-NVQTFAASADTEXKFMSLFXEDNVNACSIM 316
KRAP G+V + Q A T+ K MSLF ++N NAC++M
Sbjct: 73 KRAPPGFVRKSEQAQAQPGSTDDKLMSLFSDENPNACTVM 112
>gi|12323431|gb|AAG51694.1|AC016972_13 (AC016972) putative isoprenylated
protein; 28702-28078 [Arabidopsis thaliana]
Length = 152
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 273 (96.1 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 54/99 (54%), Positives = 70/99 (70%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDKR 205
GVKSVE+NRK +VTV+G V+P KVL R++RTGKK AE WPYVP ++V YP+A G YDK+
Sbjct: 54 GVKSVEVNRKIHKVTVSGYVEPKKVLKRIERTGKK-AEIWPYVPYNMVAYPYAVGTYDKK 112
Query: 206 APGGYVXNV---QTFAASADTEXKFMSLFXEDNVNACSIM 316
AP GYV Q E ++SLF ++N NAC++M
Sbjct: 113 APAGYVRKSEQSQLQLLPGAPENHYISLFSDENPNACTVM 152
>gi|10177126|dbj|BAB10416.1| (AB011474) atfp6-like protein [Arabidopsis
thaliana]
Length = 121
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Plus Strand HSPs:
Score = 253 (89.1 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 54/103 (52%), Positives = 69/103 (66%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVK-RTGKKKAEFWPYVPQHVVTYPHASGVYDK 202
GV V ++ KQS++TV G V P+KV++RV RTGKK AE WPYVP VV +P+A G YDK
Sbjct: 19 GVSKVTVDPKQSKLTVEGFVQPSKVVHRVMHRTGKK-AELWPYVPYEVVPHPYAPGAYDK 77
Query: 203 RAPGGYVXN------VQTFAASADTEXKFMSLFXEDNVNACSIM 316
+AP GYV N V A ++ E K+ S F +DN NAC+IM
Sbjct: 78 KAPPGYVRNALADPLVAPLARASSFEVKYTSAFSDDNPNACTIM 121
>gi|7487221|pir||T05007 hypothetical protein T19P19.90 - Arabidopsis thaliana
>gi|3080439|emb|CAA18756.1| (AL022605) putative protein
[Arabidopsis thaliana] >gi|7270954|emb|CAB80633.1| (AL161595)
putative protein [Arabidopsis thaliana]
Length = 158
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 54/101 (53%), Positives = 68/101 (67%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDKR 205
GVK+VEIN+KQ +VTV+G D +KVL + K TGKK AE WPYVP ++V P+ + YDK+
Sbjct: 58 GVKTVEINKKQQKVTVSGYADASKVLKKAKATGKK-AEIWPYVPYNLVAQPYIAQAYDKK 116
Query: 206 APGGYVXNVQ------TFAASADTEXKFMSLFXEDNVNACSIM 316
AP GYV V T A D + + SLF +DN NACSIM
Sbjct: 117 APPGYVRKVDPNVTTGTMAVYYD-DPSYTSLFSDDNPNACSIM 158
>gi|4097573|gb|AAD09515.1| (U64917) GMFP7 [Glycine max]
Length = 138
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 245 (86.2 bits), Expect = 8.1e-20, P = 8.1e-20
Identities = 49/103 (47%), Positives = 70/103 (67%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVK-RTGKKKAEFWPYVPQHVVTYPHASGVYDK 202
GV VE++RK S+VTV+G V+P+KV++R+ RTGK+ AE WPY+P VV +P+A GVYD+
Sbjct: 36 GVTEVEVDRKASKVTVSGYVEPSKVVSRIAHRTGKR-AELWPYLPYDVVAHPYAPGVYDR 94
Query: 203 RAPGGYVXNVQT------FAASADTEXKFMSLFXEDNVNACSIM 316
+AP YV N A ++ TE K+ + F +DN AC +M
Sbjct: 95 KAPSAYVRNADVDPRLTNLARASSTEVKYTTAFSDDNPAACVVM 138
>gi|4097553|gb|AAD09510.1| (U64909) ATFP6 [Arabidopsis thaliana]
Length = 116
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 236 (83.1 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 50/102 (49%), Positives = 66/102 (64%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVK-RTGKKKAEFWPYVPQHVVTYPHASGVYDK 202
GV SV + K +VTV G VDPNKV+ R+ RTGKK E WPYVP VV +P+A+GVYDK
Sbjct: 15 GVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKK-VELWPYVPYDVVAHPYAAGVYDK 73
Query: 203 RAPGGYVXNVQT-----FAASADTEXKFMSLFXEDNVNACSIM 316
+AP GYV V A ++ TE ++ + F ++N AC +M
Sbjct: 74 KAPSGYVRRVDDPGVSQLARASSTEVRYTTAFSDENPAACVVM 116
>gi|7484962|pir||T05686 farnesylated protein ATFP6 - Arabidopsis thaliana
>gi|4467145|emb|CAB37514.1| (AL035540) farnesylated protein (ATFP6)
[Arabidopsis thaliana] >gi|7270841|emb|CAB80522.1| (AL161593)
farnesylated protein (ATFP6) [Arabidopsis thaliana]
>gi|11692850|gb|AAG40028.1|AF324677_1 (AF324677) F20M13.140
[Arabidopsis thaliana] >gi|11908068|gb|AAG41463.1|AF326881_1
(AF326881) putative farnesylated protein (ATFP6) [Arabidopsis
thaliana] >gi|12642882|gb|AAK00383.1|AF339701_1 (AF339701) putative
farnesylated protein [Arabidopsis thaliana]
Length = 153
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 236 (83.1 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 50/102 (49%), Positives = 66/102 (64%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVK-RTGKKKAEFWPYVPQHVVTYPHASGVYDK 202
GV SV + K +VTV G VDPNKV+ R+ RTGKK E WPYVP VV +P+A+GVYDK
Sbjct: 52 GVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKK-VELWPYVPYDVVAHPYAAGVYDK 110
Query: 203 RAPGGYVXNVQT-----FAASADTEXKFMSLFXEDNVNACSIM 316
+AP GYV V A ++ TE ++ + F ++N AC +M
Sbjct: 111 KAPSGYVRRVDDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153
>gi|7486792|pir||T05776 hypothetical protein M4E13.120 - Arabidopsis thaliana
>gi|2924517|emb|CAA17771.1| (AL022023) putative protein
[Arabidopsis thaliana] >gi|7270457|emb|CAB80223.1| (AL161586)
putative protein [Arabidopsis thaliana]
Length = 153
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 47/103 (45%), Positives = 67/103 (65%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRV-KRTGKKKAEFWPYVPQHVVTYPHASGVYDK 202
G++ V I +VTV G V+PNKV+ R+ RTGK+ AE +P+VP VV +P+ASGVYD
Sbjct: 51 GIRDVTIEPNAQKVTVVGYVEPNKVVARIIHRTGKR-AELYPFVPYDVVAHPYASGVYDN 109
Query: 203 RAPGGYVXN------VQTFAASADTEXKFMSLFXEDNVNACSIM 316
RAP GYV N V A ++ TE ++ + F ++N +AC +M
Sbjct: 110 RAPTGYVRNTEYDPHVSRLARASSTEVRYTTAFSDENASACVVM 153
>gi|7487035|pir||T01827 hypothetical protein T15F16.6 - Arabidopsis thaliana
>gi|3377812|gb|AAC28185.1| (AF076275) contains similarity to
heavy-metal-associated domain containing proteins (Pfam: HMA.hm,
score: 12.02) [Arabidopsis thaliana] >gi|7267499|emb|CAB77982.1|
(AL161512) putative metal-binding isoprenylated protein
[Arabidopsis thaliana]
Length = 150
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 150
0 50 100
Plus Strand HSPs:
Score = 216 (76.0 bits), Expect = 9.5e-17, P = 9.5e-17
Identities = 45/100 (45%), Positives = 62/100 (62%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYD 199
V GVKSV+++ K +VTV G +DP KVL K T KKK E WPYVP +V P+ S YD
Sbjct: 51 VKGVKSVDVDVKLQKVTVTGYIDPKKVLEAAKST-KKKVELWPYVPYTMVANPYISQAYD 109
Query: 200 KRAPGGYVXNVQTFAASADT--EXKFMSLFXEDNVNACSIM 316
K+AP V V A+ +T + + +F ++N N+C+IM
Sbjct: 110 KKAPPNMVRKVPDTASVNETTVDDSYTIMFSDENPNSCAIM 150
>gi|8927670|gb|AAF82161.1|AC068143_3 (AC068143) Contains similarity to a copper
homeostasis factor (CCM) mRNA from Arabidopsis thaliana gb|U88711
and contains a heavy-metal-associated PF|00403 domain
Length = 165
Frame 2 hits (HSPs): _______________ _____
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 24/48 (50%), Positives = 33/48 (68%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFW--PYVPQHV 166
GV +VEI+ Q +VTV G D KVL +V++TG++ AE W PY P H+
Sbjct: 43 GVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGRR-AELWQLPYNPDHM 90
Score = 48 (16.9 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 9/14 (64%), Positives = 11/14 (78%), Frame = +2
Query: 275 SLFXEDNVNACSIM 316
S F ++N NACSIM
Sbjct: 152 SKFSDENPNACSIM 165
>gi|9502434|gb|AAF88133.1|AC021043_26 (AC021043) Hypothetical protein
[Arabidopsis thaliana]
Length = 141
Frame 2 hits (HSPs): ____________________ _____
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/59 (37%), Positives = 30/59 (50%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDK 202
GV V+I+ KQ RVTV G + KVL + K+ W Y P H P ++G D+
Sbjct: 23 GVHDVQIDIKQQRVTVTGSAEQKKVLKVARNVTKRDICLWSY-PYH----PESNGYNDR 76
Score = 44 (15.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = +2
Query: 275 SLFXEDNVNACSIM 316
S+F E+N + CSIM
Sbjct: 128 SMFSEENPHFCSIM 141
>gi|11358280|pir||T46133 hypothetical protein T2J13.190 - Arabidopsis thaliana
>gi|6522569|emb|CAB62013.1| (AL132967) putative protein
[Arabidopsis thaliana]
Length = 138
Frame 2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.00015, P = 0.00015
Identities = 36/111 (32%), Positives = 54/111 (48%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGC-VDPNKVLNRVKRTGKKKAEFWPYV--PQHVVT---YP-HA 184
GV+ VE+ + +VT G ++ KVL V+R GK AE WPY H + YP +
Sbjct: 28 GVEEVEVEMETQKVTARGYRLEEKKVLKAVRRAGKA-AELWPYRLGNSHFASFYKYPSYV 86
Query: 185 SGVYDKRA----P-GGYVXNVQT---FAASADTEXKFMSLFXEDNVNACSIM 316
+ Y A P GG T ++ + + S+F +DN +AC+IM
Sbjct: 87 TNHYYSDAHRTDPTGGVHTFFHTPADYSVAVAGDEIAASMFSDDNPHACTIM 138
>gi|11290106|pir||T50778 copper chaperone homolog CCH [imported] - soybean
>gi|6525011|gb|AAF15286.1|AF198627_1 (AF198627) copper chaperone
homolog CCH [Glycine max]
Length = 130
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 130
0 50 100
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.00019, P = 0.00019
Identities = 20/40 (50%), Positives = 30/40 (75%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFW 145
GV+S +I+ K+ +VTV G V+P++VL V ++GKK A FW
Sbjct: 30 GVESFDIDLKEQKVTVKGNVEPDEVLQAVSKSGKKTA-FW 68
>gi|11290104|pir||T47741 copper homeostasis factor [imported] - Arabidopsis
thaliana >gi|3168840|gb|AAC33510.1| (U88711) copper homeostasis
factor [Arabidopsis thaliana] >gi|7572922|emb|CAB87423.1|
(AL163763) copper homeostasis factor [Arabidopsis thaliana]
Length = 121
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.00039, P = 0.00039
Identities = 19/41 (46%), Positives = 28/41 (68%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWP 148
GV+S +I+ K+ +VTV G V+P V V +TGKK + +WP
Sbjct: 29 GVESFDIDIKEQKVTVKGNVEPEAVFQTVSKTGKKTS-YWP 68
>gi|12323573|gb|AAG51766.1|AC066691_6 (AC066691) copper homeostasis factor,
putative; 27145-26758 [Arabidopsis thaliana]
Length = 66
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.00039, P = 0.00039
Identities = 20/40 (50%), Positives = 28/40 (70%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFW 145
GV+S +++ K+ +VTV G V P+ VL V +TGKK A FW
Sbjct: 19 GVESFDVDIKEQKVTVKGNVQPDAVLQTVTKTGKKTA-FW 57
>gi|6728965|gb|AAF26963.1|AC018363_8 (AC018363) hypothetical protein
[Arabidopsis thaliana]
Length = 246
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.0014, P = 0.0014
Identities = 25/99 (25%), Positives = 52/99 (52%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYD 199
+ G++SVE +R +S V V G +DP K++ ++K+ K AE + + +
Sbjct: 150 IKGIQSVEPDRSKSTVVVRGVMDPPKLVEKIKKKLGKHAELLSQITEKGKDNNKKNNNKK 209
Query: 200 KRAPGGYVXNVQTFAASADTEXKFMS-LFXEDNVNACSIM 316
+ + G + + + ++ + S +F ++NV++CSIM
Sbjct: 210 EESDGNKIFS---YPPQYSSQHAYPSQIFSDENVHSCSIM 246
>gi|11290108|pir||T50779 copper chaperone homolog CCH [imported] - rice
>gi|6525009|gb|AAF15285.1|AF198626_1 (AF198626) copper chaperone
homolog CCH [Oryza sativa]
Length = 132
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.025, P = 0.025
Identities = 18/40 (45%), Positives = 26/40 (65%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFW 145
GV++ +I+ +Q +VTV G V P V V +TGKK + FW
Sbjct: 30 GVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTS-FW 68
>gi|12083536|gb|AAG48845.1|AC084218_15 (AC084218) hypothetical protein [Oryza
sativa]
Length = 368
Frame 2 hits (HSPs): ______ ______
__________________________________________________
Database sequence: | | | | 368
0 150 300
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.056, Sum P(2) = 0.054
Identities = 18/48 (37%), Positives = 25/48 (52%), Frame = +2
Query: 173 YPHASGVYDKRAPGGYVXNVQTFAASADTEXKFMSLFXEDNVNACSIM 316
YP A G + GGY+ + AA+A +F E+N NACS+M
Sbjct: 325 YPMAGG-FGGGGGGGYLYST---AAAAPPPASSYYMFSEENANACSVM 368
Score = 61 (21.5 bits), Expect = 0.056, Sum P(2) = 0.054
Identities = 14/43 (32%), Positives = 25/43 (58%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWP 148
+ GV +I+ + +V V G V + ++ ++ +TGK AE WP
Sbjct: 38 IEGVYKTDIDVQHQKVVVIGNVSVDTLVKKLVKTGKH-AEPWP 79
>gi|12321758|gb|AAG50918.1|AC069159_19 (AC069159) hypothetical protein
[Arabidopsis thaliana]
Length = 364
Frame 2 hits (HSPs): ________ __
__________________________________________________
Database sequence: | | | | 364
0 150 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.069, Sum P(2) = 0.067
Identities = 20/53 (37%), Positives = 30/53 (56%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYP 178
+ GV V+I+ KQ +VTV G + P +L ++ + GK AE P +P V P
Sbjct: 64 IEGVFKVDIDVKQHKVTVIGIISPEILLKKLNKAGKN-AEQLPEIPDPVDNKP 115
Score = 43 (15.1 bits), Expect = 0.069, Sum P(2) = 0.067
Identities = 7/13 (53%), Positives = 10/13 (76%), Frame = +2
Query: 278 LFXEDNVNACSIM 316
LF ++N N C+IM
Sbjct: 352 LFSDENPNGCAIM 364
>gi|4097547|gb|AAD09507.1| (U64906) ATFP3 [Arabidopsis thaliana]
Length = 297
Frame 2 hits (HSPs): _______ ___
__________________________________________________
Database sequence: | | | | | | | 297
0 50 100 150 200 250
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.078, Sum P(2) = 0.075
Identities = 19/38 (50%), Positives = 25/38 (65%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRV-KRTGKKKA 136
GV+S E + K S+VTV G +P K++ V KRTGK A
Sbjct: 138 GVESAESDLKSSQVTVKGVFEPQKLVEYVYKRTGKHAA 175
Score = 46 (16.2 bits), Expect = 0.078, Sum P(2) = 0.075
Identities = 7/13 (53%), Positives = 11/13 (84%), Frame = +2
Query: 278 LFXEDNVNACSIM 316
LF ++N NAC++M
Sbjct: 285 LFSDENPNACTVM 297
>gi|9758294|dbj|BAB08818.1| (AB007649) contains similarity to
ATFP3~gene_id:MLE2.16 [Arabidopsis thaliana]
Length = 340
Frame 2 hits (HSPs): _______ __
__________________________________________________
Database sequence: | | | | 340
0 150 300
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 19/38 (50%), Positives = 25/38 (65%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRV-KRTGKKKA 136
GV+S E + K S+VTV G +P K++ V KRTGK A
Sbjct: 182 GVESAESDLKSSQVTVKGVFEPQKLVEYVYKRTGKHAA 219
Score = 46 (16.2 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 7/13 (53%), Positives = 11/13 (84%), Frame = +2
Query: 278 LFXEDNVNACSIM 316
LF ++N NAC++M
Sbjct: 328 LFSDENPNACTVM 340
>gi|9885429|gb|AAG01446.1|AF280056_1 (AF280056) putative copper chaperone
[Chlamydomonas reinhardtii]
Length = 70
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.22, P = 0.20
Identities = 15/36 (41%), Positives = 23/36 (63%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNG-CVDPNKVLNRVKRTGKK 130
GV S E++ ++ + V G +DP VL +V +TGKK
Sbjct: 29 GVDSYEVSLEKQQAVVRGKALDPQAVLEKVAKTGKK 64
>gi|10177858|dbj|BAB11210.1| (AB010068) gene_id:K18P6.11~unknown protein
[Arabidopsis thaliana]
Length = 319
Frame 2 hits (HSPs): ________ ___
__________________________________________________
Database sequence: | | | | | | | | 319
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.53, Sum P(2) = 0.41
Identities = 14/46 (30%), Positives = 29/46 (63%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVP 157
+ GV+ V ++ +++VT+ G +DP V N++K+ K+ A+ +P
Sbjct: 80 IRGVEEVVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMAKVLSPLP 125
Score = 40 (14.1 bits), Expect = 0.53, Sum P(2) = 0.41
Identities = 7/12 (58%), Positives = 9/12 (75%), Frame = +2
Query: 278 LFXEDNVNACSI 313
LF ++N NAC I
Sbjct: 307 LFSDENPNACCI 318
>gi|4883611|gb|AAD31580.1|AC006922_12 (AC006922) putative farnesylated protein
[Arabidopsis thaliana]
Length = 329
Frame 2 hits (HSPs): ___________ ______
__________________________________________________
Database sequence: | | | | 329
0 150 300
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 0.87, Sum P(2) = 0.58
Identities = 20/64 (31%), Positives = 34/64 (53%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDKR 205
GVK V + +++ V G +DP K+ +++ K+K P+ V P A+ V +K+
Sbjct: 19 GVKDVTADTGGNKLLVVGKIDPVKLQEKLEEKTKRKVVLANPPPK--VEGPVAAAVGEKK 76
Query: 206 APGG 217
A GG
Sbjct: 77 ADGG 80
Score = 53 (18.7 bits), Expect = 0.87, Sum P(2) = 0.58
Identities = 11/37 (29%), Positives = 18/37 (48%), Frame = +2
Query: 209 PG-GYVXNVQTFAASADTEXKFMSLFXEDNVNACSIM 316
PG GY +++ A +F ++N N CS+M
Sbjct: 293 PGSGYNYASESYVPYAQPNVNAPGMFSDENPNGCSVM 329
>gi|6862917|gb|AAF30306.1|AC018907_6 (AC018907) hypothetical protein
[Arabidopsis thaliana] >gi|11908104|gb|AAG41481.1|AF326899_1
(AF326899) unknown protein [Arabidopsis thaliana]
Length = 473
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 1.0, P = 0.65
Identities = 16/42 (38%), Positives = 30/42 (71%), Frame = +2
Query: 20 VAGVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFW 145
+ GV + +I+ +Q +VTV+G VDP+ ++ ++ ++GK AE W
Sbjct: 34 IEGVFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSGKH-AEIW 74
>gi|8777396|dbj|BAA96986.1| (AB023037) contains similarity to
ATFP3~gene_id:MFB16.13 [Arabidopsis thaliana]
Length = 139
Frame 2 hits (HSPs): _______________ _____
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 1.2, Sum P(2) = 0.71
Identities = 17/38 (44%), Positives = 24/38 (63%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRV-KRTGKKKA 136
GV+SVE + K S+V+V G P K++ + KR GK A
Sbjct: 6 GVESVEPDFKASQVSVKGVFTPEKLVEFIYKRIGKHAA 43
Score = 41 (14.4 bits), Expect = 1.2, Sum P(2) = 0.71
Identities = 6/13 (46%), Positives = 11/13 (84%), Frame = +2
Query: 278 LFXEDNVNACSIM 316
+F ++N NAC+I+
Sbjct: 127 IFSDENPNACTII 139
>gi|2462831|gb|AAB72166.1| (AF000657) hypothetical protein [Arabidopsis
thaliana]
Length = 342
Frame 2 hits (HSPs): ______ ______
__________________________________________________
Database sequence: | | | | 342
0 150 300
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 16/40 (40%), Positives = 25/40 (62%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKRTGKKKAEFW 145
GV V+I + +VTV+G VD ++N++ + GK AE W
Sbjct: 23 GVCHVKIEAEHQKVTVSGSVDSATLINKLVKAGKH-AELW 61
Score = 39 (13.7 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 8/36 (22%), Positives = 18/36 (50%), Frame = +2
Query: 140 FWPYVPQ---HVVTYPHASGVYDKRAPGGYVXNVQT 238
++ Y P + YP+AS Y +++ + N+ +
Sbjct: 294 YYNYTPSPYSYYPYYPYASDQYQQQSSHSHATNMSS 329
>gi|7106509|dbj|BAA92194.1| (AP001278) hypothetical protein [Oryza sativa]
Length = 153
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 9.0, P = 1.0
Identities = 13/31 (41%), Positives = 25/31 (80%), Frame = +2
Query: 26 GVKSVEINRKQSRVTVNGCVDPNKVLNRVKR 118
G+KS++I+ ++ +TV G VDP K+++R+K+
Sbjct: 29 GIKSMDIDEEKCTLTVLGPVDPVKIVHRLKK 59
>gi|9632208 ref|NP_048936.1| a580R [Paramecium bursaria Chlorella virus 1]
>gi|7461715|pir||T18082 hypothetical protein a580R - Chlorella
virus PBCV-1 >gi|2447150|gb|AAC97008.1| (U42580) a580R [Paramecium
bursaria Chlorella virus 1]
Length = 73
Frame -2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 9.3, P = 1.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Frame = -2
Query: 120 VLFTLFNTLFGSTQPFTVTLLCFLF 46
+LF LF+ LF T P L+CF F
Sbjct: 19 ILFILFSMLFSITFPSIGNLVCFAF 43
>gi|9827706|emb|CAB97795.1| (AL160493) probable pelota protein/yeast dom34
homolog, probable involvement in meioticand mitotic divisions
[Leishmania major]
Length = 78
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 9.7, P = 1.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Frame = +2
Query: 56 QSRVTVNGCVDPNKVLNRVKRTGKKKAEFWPYVPQHVVTYPHASGVYDKRAPGGYVXNVQ 235
+ R+ CVD ++ + + T K + Y PQ+V Y +G A GG + +
Sbjct: 5 RQRMESTKCVDDIRMWEKFQDTMNKDPDRCVYTPQYVY-YAAMAG-----AVGGLMISDD 58
Query: 236 TFAASADTEXKF-MSL 280
F + TE +F +SL
Sbjct: 59 VFRSENPTERRFFLSL 74
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.91
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.154 0.557
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.145 0.466
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.599
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.147 0.546
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.152 0.508
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.363 0.160 0.611
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 146 137 10. 73 3 12 22 0.11 33
30 0.10 36
+2 0 147 140 10. 73 3 12 22 0.12 33
30 0.11 36
+1 0 147 141 10. 73 3 12 22 0.12 33
30 0.11 36
-1 0 147 139 10. 73 3 12 22 0.12 33
30 0.10 36
-2 0 147 138 10. 73 3 12 22 0.12 33
30 0.10 36
-3 0 146 138 10. 73 3 12 22 0.12 33
30 0.10 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 31
No. of states in DFA: 588 (58 KB)
Total size of DFA: 184 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 137.90u 1.09s 138.99t Elapsed: 00:00:23
Total cpu time: 137.97u 1.10s 139.07t Elapsed: 00:00:23
Start: Mon Oct 1 23:19:18 2001 End: Mon Oct 1 23:19:41 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000