R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 2060 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7387766|sp|Q39967|HEV5_HEVBR MAJOR LATEX ALLERGEN HEV B 5
>gi|7488892|pir||T10768 latex allergen Hev b5 - Para rubber tree
>gi|1480457|gb|AAC49447.1| (U42640) latex allergen [Hevea
brasiliensis] >gi|1493836|gb|AAC49448.1| (U51631) pI 3.5 latex
allergen [Hevea brasiliensis]
Length = 151
Frame 2 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
Plus Strand HSPs:
Score = 158 (55.6 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 50/112 (44%), Positives = 58/112 (51%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPAT-----QVTTTEEPKEETTKEAKEEEEAP 172
VEV + T + +NE EVTK EET E+PA Q T P++E A E EAP
Sbjct: 4 VEV-ESAATALPKNETPEVTKAEETKTEEPAAPPASEQETADATPEKEEPTAAPAEPEAP 62
Query: 173 V-ETNEATEV-----TEEVKPEV-----EENPA-PERTEEEELKEETKETRIQ 295
ET +A EV TEE PE EE PA PE EEE K ETKET +
Sbjct: 63 APETEKAEEVEKIEKTEEPAPEADQTTPEEKPAEPEPVAEEEPKHETKETETE 115
Score = 99 (34.8 bits), Expect = 0.00091, P = 0.00091
Identities = 33/92 (35%), Positives = 40/92 (43%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE---EEAPVETNEAT 193
+ P TE +A EV KIE+T P TT EE E A+EE E ET
Sbjct: 60 EAPAPETE-KAEEVEKIEKTEEPAPEADQTTPEEKPAEPEPVAEEEPKHETKETETEAPA 118
Query: 194 EVTEEVKPEVEENPAPERTEEEELK---EETKE 283
E KP EE P E E + E+T+E
Sbjct: 119 APAEGEKPAEEEKPITEAAETATTEVPVEKTEE 151
Score = 54 (19.0 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1
Query: 295 APVEEQKP-EENKPAETVEETQTEQFLV*ERLE 390
AP E +KP EE KP ET T + V E+ E
Sbjct: 119 APAEGEKPAEEEKPITEAAETATTEVPV-EKTE 150
>gi|2961298|emb|CAA12357.1| (AJ225026) hypothetical protein [Cicer arietinum]
Length = 168
Frame 2 hits (HSPs): ___________________________________________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 168
0 50 100 150
Plus Strand HSPs:
Score = 156 (54.9 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 54/109 (49%), Positives = 63/109 (57%), Frame = +2
Query: 8 VEVAQQTPTT-VTENE-ATEVTKIEET-TPEQPATQVT-TTEEPK----------EETTK 145
VEVA Q P T V ENE TEV ET T +QPAT+V TE+P+ EE T+
Sbjct: 4 VEVAHQAPVTAVQENEPTTEVINTPETITEQQPATEVPEATEQPEAEVPATEETIEEPTE 63
Query: 146 EAKEEEEAPVETNEATEV-TEEVKPEV--EENP-APERTEE--EELKEE 274
AKEE A ET + EV T+EV E EEN AP+ TEE EE+KEE
Sbjct: 64 TAKEEVPAAPETQDPLEVETKEVVTEEAKEENTEAPKETEESPEEVKEE 112
Score = 128 (45.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 36/96 (37%), Positives = 46/96 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETT-PEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
EV ++T TE EV ET P + T+ TEE KEE T+ KE EE+P E
Sbjct: 50 EVPATEETIEEPTETAKEEVPAAPETQDPLEVETKEVVTEEAKEENTEAPKETEESPEEV 109
Query: 182 NEATEVTEEVKPEVEEN---PAPERTEEEELKEETK 280
E V E + E+ PAP T E E ++E K
Sbjct: 110 KEEAAVEEPIATIENESAAPPAPPATAEVEEEKENK 145
Score = 55 (19.4 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 13/22 (59%), Positives = 15/22 (68%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEE 351
P A VEE+K ENKP E VE+
Sbjct: 133 PATAEVEEEK--ENKPVEPVEQ 152
>gi|4887129|gb|AAD32205.1|AF134731_1 (AF134731) putative allergen protein
[Prunus armeniaca]
Length = 168
Frame 2 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 168
0 50 100 150
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 47/106 (44%), Positives = 55/106 (51%), Frame = +2
Query: 8 VEVAQQTPTTVTENEA--TEVTKIEETTPEQPA---------TQVTTTEEPKEETT--KE 148
VEVA T+ ENEA EV K EE TPE+P ++ TTEEPKE T E
Sbjct: 4 VEVAPAA--TLQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATTEEPKETTPVEAE 61
Query: 149 AKEEEEAPVETNEATEVTEEVKP-EVEENP-APERTEEEELKEETKET 286
A+ E EAP T V EV+ EV E P A E EE ET++T
Sbjct: 62 AEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAEEPAATETEKT 109
Score = 137 (48.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 41/118 (34%), Positives = 54/118 (45%), Frame = +2
Query: 8 VEVAQQTPTTVTENEA--TEVTKIEETTPEQP-ATQVTTTEEPKEETTKEAKEEEEAPVE 178
VEVA T+ ENEA EV K EE TPE+P A E + TT+E KE PVE
Sbjct: 4 VEVAPAA--TLQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATTEEPKET--TPVE 59
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E PE E P P E +E+ EE K + + ++ + +PK
Sbjct: 60 AEAEAEAEAPAAPEAE-TPVPAEVETKEVAEEPKAAEAEAEEPAATETEKTEKTEAEEPK 118
Query: 359 Q 361
+
Sbjct: 119 E 119
Score = 105 (37.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 36/92 (39%), Positives = 43/92 (46%), Frame = +2
Query: 11 EVAQQTPTTV-TENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
E + TP E EA E TP PA +V T E +E EA+ EE A ET E
Sbjct: 51 EPKETTPVEAEAEAEAEAPAAPEAETPV-PA-EVETKEVAEEPKAAEAEAEEPAATET-E 107
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
TE TE +P+ P EE KEET E+
Sbjct: 108 KTEKTEAEEPKEVTAAEPVAAVAEETKEETTES 140
Score = 104 (36.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 38/109 (34%), Positives = 45/109 (41%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTP---------EQPATQVTTTEEPKEETTKEAKEEE 163
E P V E+EA + +ETTP E PA T P E TKE EE
Sbjct: 32 EPVAAAPAAVPESEAATTEEPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEP 91
Query: 164 EA-------PVETN-EATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+A P T E TE TE +P+ P EE KEET E+
Sbjct: 92 KAAEAEAEEPAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTES 140
Score = 103 (36.3 bits), Expect = 0.00022, P = 0.00022
Identities = 31/95 (32%), Positives = 41/95 (43%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPA-TQVTTTEEPKEETTKEAKEEEEAPVETNE 187
E P V E E K E E+PA T+ TE+ + E KE E PV
Sbjct: 73 EAETPVPAEVETKEVAEEPKAAEAEAEEPAATETEKTEKTEAEEPKEVTAAE--PVAA-- 128
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQ 295
E T+E E E PA EEE+ +E T + ++
Sbjct: 129 VAEETKEETTESAETPAAPPAEEEKAEEATTDVPVE 164
Score = 103 (36.3 bits), Expect = 0.00022, P = 0.00022
Identities = 35/96 (36%), Positives = 42/96 (43%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPA------TQVTTTEEPKEETTKE--AKEEEE 166
E P V E E K E E+PA T+ T EEPKE T E A EE
Sbjct: 73 EAETPVPAEVETKEVAEEPKAAEAEAEEPAATETEKTEKTEAEEPKEVTAAEPVAAVAEE 132
Query: 167 APVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
ET E+ E P EE A E T + + E+T+E
Sbjct: 133 TKEETTESAETP--AAPPAEEEKAEEATTDVPV-EKTEE 168
Score = 44 (15.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEETQ 357
P P EE+K EE VE+T+
Sbjct: 144 PAAPPAEEEKAEEATTDVPVEKTE 167
Score = 37 (13.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 10/27 (37%), Positives = 12/27 (44%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEETQTEQ 366
P A EE K E + AET E+
Sbjct: 125 PVAAVAEETKEETTESAETPAAPPAEE 151
>gi|1076538|pir||S51232 gibberellin-responsive ovarian protein G14 - garden pea
(fragment) >gi|633605|emb|CAA87711.1| (Z47790) ovary protein
induced by treatment with gibberellic acid [Pisum sativum]
Length = 204
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 53/101 (52%), Positives = 59/101 (58%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTP--EQPATQVTTTEEPKEETTKEA--------K 154
EVE Q P NE EVTK++ETTP E ++ TTE+PKEE E K
Sbjct: 48 EVETQQVVP-----NETVEVTKVDETTPASEVLVSEPVTTEQPKEEAVAEEAVAEAAVEK 102
Query: 155 EEE-EAPVETNEATEVTEEVKPEVEENPAPERTEE---EELKEETKET 286
E E E PVE E TEV EE KPEVE N A E+ EE E EE KET
Sbjct: 103 EAETEVPVEA-ETTEVAEEAKPEVE-NLATEKVEEVKEEATTEEAKET 148
Score = 143 (50.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 48/101 (47%), Positives = 52/101 (51%), Frame = +2
Query: 5 EVEVAQQTPT-TVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEA--------KE 157
EVE Q P TV + E T E +P T TE+PKEE E KE
Sbjct: 48 EVETQQVVPNETVEVTKVDETTPASEVLVSEPVT----TEQPKEEAVAEEAVAEAAVEKE 103
Query: 158 EE-EAPVETNEATEVTEEVKPEVEENPAPERTEE---EELKEETKET 286
E E PVE E TEV EE KPEVE N A E+ EE E EE KET
Sbjct: 104 AETEVPVEA-ETTEVAEEAKPEVE-NLATEKVEEVKEEATTEEAKET 148
Score = 107 (37.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 34/83 (40%), Positives = 36/83 (43%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
EV P T TE E EE E + TE P E T E EE + VE N A
Sbjct: 73 EVLVSEPVT-TEQPKEEAVA-EEAVAEAAVEKEAETEVPVEAETTEVAEEAKPEVE-NLA 129
Query: 191 TEVTEEVKPEVEENPAPERTEEE 259
TE EEVK E A E TE E
Sbjct: 130 TEKVEEVKEEATTEEAKETTETE 152
Score = 93 (32.7 bits), Expect = 0.038, P = 0.037
Identities = 32/79 (40%), Positives = 39/79 (49%), Frame = +2
Query: 5 EVEVAQQTPTTV-TENEATEVTKIEETTPEQPATQVTTTEEPKEE-TTKEAKEEEE---- 166
E V ++ T V E E TEV EE PE EE KEE TT+EAKE E
Sbjct: 97 EAAVEKEAETEVPVEAETTEVA--EEAKPEVENLATEKVEEVKEEATTEEAKETTETESA 154
Query: 167 ---APVETNEATEVTEEVKPE 220
A VE N+A E ++ P+
Sbjct: 155 VASAAVEENKAAETAVKMSPQ 175
>gi|7406667|emb|CAB85627.1| (AJ237987) putative ripening-related protein [Vitis
vinifera]
Length = 152
Frame 2 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 118 (41.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 38/93 (40%), Positives = 46/93 (49%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATE-VTKIEETTPEQ----PATQVTTTEEPKEETTKEAKEEEEAP 172
VEVA T T + ENE TE + K+EE ++ PA TEE KEE E EA
Sbjct: 4 VEVASVT-TALPENEKTEELNKVEEGAVKEVEAPPAAPEPVTEETKEEAPVEEAAAPEAE 62
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEET 277
+ EV E K EV E A E E E+ + ET
Sbjct: 63 AKAEAPVEVEVETK-EVVEEAAVEEAEAEKTEGET 96
Score = 101 (35.6 bits), Expect = 0.00039, P = 0.00039
Identities = 33/88 (37%), Positives = 42/88 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQV-TTTEEPKEETTKEAKEEEEAPVETN 184
VEV +T V E A E + E+T E PA + E+ KEETT+EA AP E
Sbjct: 69 VEVEVETKEVV-EEAAVEEAEAEKTEGETPAVEAEAAVEKAKEETTEEAAA---APAEEA 124
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKE 271
A E EE KP A E+++E
Sbjct: 125 AAKE-EEEAKPAEAAEEASTEVPVEKIEE 152
Score = 100 (35.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 37/89 (41%), Positives = 41/89 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETT-PEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
EVE P VTE E E +EE PE A E E TKE EE A VE
Sbjct: 32 EVEAPPAAPEPVTE-ETKEEAPVEEAAAPEAEAKAEAPVEVEVE--TKEVVEE--AAVEE 86
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKE 271
EA E TE P VE A E+ +EE +E
Sbjct: 87 AEA-EKTEGETPAVEAEAAVEKAKEETTEE 115
Score = 90 (31.7 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 38/107 (35%), Positives = 50/107 (46%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATE-VTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
VEVA T T + ENE TE + K+EE ++ V E T+E KEE APVE
Sbjct: 4 VEVASVT-TALPENEKTEELNKVEEGAVKE----VEAPPAAPEPVTEETKEE--APVEEA 56
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRT 328
A E E K E AP E E KE +E ++ +++ T
Sbjct: 57 AAPEA--EAKAE-----APVEVEVET-KEVVEEAAVEEAEAEKTEGET 96
Score = 90 (31.7 bits), Expect = 0.040, P = 0.039
Identities = 39/102 (38%), Positives = 44/102 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETT-PEQPA-------TQVTTTEEPKEETTKEA--- 151
EVE P VTE E E +EE PE A +V T E +E +EA
Sbjct: 32 EVEAPPAAPEPVTE-ETKEEAPVEEAAAPEAEAKAEAPVEVEVETKEVVEEAAVEEAEAE 90
Query: 152 KEEEEAP-VETNEATE-VTEEVKPEVEENPAPERTEEEELKEETK 280
K E E P VE A E EE E PA E +EE EE K
Sbjct: 91 KTEGETPAVEAEAAVEKAKEETTEEAAAAPAEEAAAKEE--EEAK 133
Score = 87 (30.6 bits), Expect = 0.11, P = 0.11
Identities = 39/109 (35%), Positives = 43/109 (39%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPA-------TQVTTTEEPKEETTKEA---K 154
EVE P VTE E E PE A +V T E +E +EA K
Sbjct: 32 EVEAPPAAPEPVTEETKEEAPVEEAAAPEAEAKAEAPVEVEVETKEVVEEAAVEEAEAEK 91
Query: 155 EEEEAP-VETNEATE-VTEEVKPEVEENPAPERT--EEEELK--EETKE 283
E E P VE A E EE E PA E EEEE K E +E
Sbjct: 92 TEGETPAVEAEAAVEKAKEETTEEAAAAPAEEAAAKEEEEAKPAEAAEE 140
Score = 58 (20.4 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 14/26 (53%), Positives = 16/26 (61%), Frame = +1
Query: 295 APVEE---QKPEENKPAETVEETQTE 363
AP EE ++ EE KPAE EE TE
Sbjct: 119 APAEEAAAKEEEEAKPAEAAEEASTE 144
>gi|9049359|dbj|BAA99394.1| (AB035900) vacuolar calcium binding protein
[Raphanus sativus]
Length = 248
Frame 2 hits (HSPs): _______________________________________________
Frame 1 hits (HSPs): _______ __________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 37/96 (38%), Positives = 50/96 (52%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETT-PE-QPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E ++T T T E +K E+ P+ + T EE K E E K+EEEAPV
Sbjct: 134 EEVEETKTEETPAVVEEESKAEDVVEPKKEEETPAVVEEESKTEEVVEPKKEEEAPVVVE 193
Query: 185 EATEVTEEVKPEVEENPAP-ERTEEEELKEETKETRI 292
E T+ EEVK + EE PA E ++ E +EE K T +
Sbjct: 194 EETKAEEEVK-KTEETPAVVEEEKKPEAEEEEKTTEV 229
Score = 128 (45.1 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 37/96 (38%), Positives = 48/96 (50%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTT----TEEPKEETTKEAKEEEEAPV 175
VEV P TV E + ++ P P T+ T TEE K ET +E K+EEEAPV
Sbjct: 17 VEVTP--PKTVAPEETVAAAVVADSAPA-PVTETETPVKETEETKTET-EEIKKEEEAPV 72
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQ 295
E EE VEE E E + +EE +ET+ +
Sbjct: 73 EVTTKDLPVEEAPAAVEEESKTEEVVEPKKEEEVEETKTE 112
Score = 126 (44.4 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 39/101 (38%), Positives = 52/101 (51%), Frame = +2
Query: 5 EVEVA--QQTPTTVTENEATEVT-------KIEETTPEQPATQVTTTEEPKEETTKEAKE 157
EVE ++TP V E TE ++EET E+ T EE K E E K+
Sbjct: 105 EVEETKTEETPAVVEEESKTEEVVEPKKEEEVEETKTEE--TPAVVEEESKAEDVVEPKK 162
Query: 158 EEEAPVETNEATEVTEEVKPEVEENPAPERTEEE-ELKEETKET 286
EEE P E ++ E V+P+ EE AP EEE + +EE K+T
Sbjct: 163 EEETPAVVEEESKTEEVVEPKKEEE-APVVVEEETKAEEEVKKT 205
Score = 119 (41.9 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 36/93 (38%), Positives = 49/93 (52%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE-PKEETTKEAKEEEEAPVETNEA 190
VA P VTE E T V + EET E ++ EE P E TTK+ EE AP E
Sbjct: 36 VADSAPAPVTETE-TPVKETEETKTE--TEEIKKEEEAPVEVTTKDLPVEE-APAAVEEE 91
Query: 191 TEVTEEVKPEVEENPAPERTEEEE--LKEETKETRI 292
++ E V+P+ EE +TEE ++EE+K +
Sbjct: 92 SKTEEVVEPKKEEEVEETKTEETPAVVEEESKTEEV 127
Score = 112 (39.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 38/130 (29%), Positives = 60/130 (46%), Frame = +2
Query: 8 VEVAQQTPTTVT--ENEATEVTKIEETTPEQPATQVTTTE--EPKEETTKEAKEEEEAPV 175
VE +T V + E E TK EET P + T E EPK+E E + EE P
Sbjct: 88 VEEESKTEEVVEPKKEEEVEETKTEET-PAVVEEESKTEEVVEPKKEEEVEETKTEETPA 146
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
E ++ + V+P+ EE P EEE EE E + + + + T + ++K
Sbjct: 147 VVEEESKAEDVVEPKKEEE-TPAVVEEESKTEEVVEPKKEEEAPVVVEEETKAEEEVKKT 205
Query: 356 KQNNFLFEKDWK 391
++ + E++ K
Sbjct: 206 EETPAVVEEEKK 217
Score = 109 (38.4 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 40/98 (40%), Positives = 50/98 (51%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTT----TEEPKEETTKEAKEEEEAPV 175
VEV P TV E + ++ P P T+ T TEE K ET +E K+EEEAPV
Sbjct: 17 VEVTP--PKTVAPEETVAAAVVADSAPA-PVTETETPVKETEETKTET-EEIKKEEEAPV 72
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
E VT + P VEE AP EEE EE E + + +
Sbjct: 73 E------VTTKDLP-VEE--APAAVEEESKTEEVVEPKKEEE 105
Score = 107 (37.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/94 (34%), Positives = 44/94 (46%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTT--EEPKEETTKEAKEEEEAPVET 181
V+ ++T T E + E +E TT + P + EE K E E K+EEE
Sbjct: 51 VKETEETKTETEEIKKEEEAPVEVTTKDLPVEEAPAAVEEESKTEEVVEPKKEEEVEETK 110
Query: 182 NEATEVTEEVKPEVEENPAPERTEE-EELK-EET 277
E T E + + EE P++ EE EE K EET
Sbjct: 111 TEETPAVVEEESKTEEVVEPKKEEEVEETKTEET 144
Score = 79 (27.8 bits), Expect = 4.6, P = 0.99
Identities = 26/89 (29%), Positives = 38/89 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE-----EEEA 169
E + ++TP V E TE ++ E E+ A V E EE K+ +E EEE
Sbjct: 159 EPKKEEETPAVVEEESKTE--EVVEPKKEEEAPVVVEEETKAEEEVKKTEETPAVVEEEK 216
Query: 170 PVETNEATEVTEEVKPEVEENPAPERTEEEE 262
E E + TE + PA E+ +
Sbjct: 217 KPEAEEEEKTTEVAAVQAAAAPAEVAVEKAD 247
Score = 54 (19.0 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 16/29 (55%), Positives = 19/29 (65%), Frame = +1
Query: 292 PAPVEEQ-KPEE---NKPAETVEETQTEQ 366
PA VEE+ K EE K E VEET+TE+
Sbjct: 115 PAVVEEESKTEEVVEPKKEEEVEETKTEE 143
Score = 52 (18.3 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 15/34 (44%), Positives = 20/34 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFLV*ERLEA*AP 402
V E K EE PA EE++TE+ +V + E AP
Sbjct: 157 VVEPKKEEETPAVVEEESKTEE-VVEPKKEEEAP 189
Score = 45 (15.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E K EE P EET+ E+
Sbjct: 179 VVEPKKEEEAPVVVEEETKAEE 200
>gi|7406665|emb|CAB85626.1| (AJ237986) putative ripening-related protein [Vitis
vinifera]
Length = 173
Frame 2 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 36/97 (37%), Positives = 48/97 (49%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQ----PATQVTTTEEPKEETTKEAKEEE----- 163
EV TP ++E + E K EET E+ P T EEPKE T EE
Sbjct: 5 EVVSATPA-LSEEKTEESVKAEETPVEEVAAAPPTPEPVAEEPKEAETAAVPEESAAPEA 63
Query: 164 EAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
EAP + +E EV E+V EVE E+T++ ++E E
Sbjct: 64 EAPADQDETKEVVEQV--EVETKEVVEKTDQAVVEEPAVE 101
Score = 109 (38.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/80 (43%), Positives = 43/80 (53%), Frame = +2
Query: 44 ENEATEVT-KIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPV--ETNEATEVTEEVK 214
E E EV K ++ E+PA V TEE EET + E +PV ET EATE EE
Sbjct: 80 EVETKEVVEKTDQAVVEEPA--VEKTEEVPEETPDQ---ETNSPVVEETKEATEPAEEPA 134
Query: 215 PEVEENPAPERTEEEELKEETKE 283
P+ E PA E +EE E +E
Sbjct: 135 PKPEPAPADEAPKEEGPAAEEEE 157
Score = 107 (37.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 36/91 (39%), Positives = 43/91 (47%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTK-IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++T V E A E T+ + E TP+Q T P E TKEA E E P E
Sbjct: 85 EVVEKTDQAVVEEPAVEKTEEVPEETPDQE------TNSPVVEETKEATEPAEEPAPKPE 138
Query: 188 ATEVTEEVKPEVEENPAPERTE---EEELKEETKE 283
E K EE PA E E E ++K ET E
Sbjct: 139 PAPADEAPK---EEGPAAEEEEKPAEAKVKVETDE 170
Score = 102 (35.9 bits), Expect = 0.00046, P = 0.00046
Identities = 40/119 (33%), Positives = 53/119 (44%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE-----EAPVETNEATEVTEE 208
E+ E T +EE P T EEPKE T EE EAP + +E EV E+
Sbjct: 20 ESVKAEETPVEEVAAAPP-TPEPVAEEPKEAETAAVPEESAAPEAEAPADQDETKEVVEQ 78
Query: 209 VKPE----VE-------ENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLK-PLRK 352
V+ E VE E PA E+TEE + EET + ++ T + P K
Sbjct: 79 VEVETKEVVEKTDQAVVEEPAVEKTEE--VPEETPDQETNSPVVEETKEATEPAEEPAPK 136
Query: 353 PK 358
P+
Sbjct: 137 PE 138
Score = 92 (32.4 bits), Expect = 0.034, P = 0.033
Identities = 28/69 (40%), Positives = 35/69 (50%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTP-EQPATQ---VTTTEEPKEETTKEAKEEEEAPVE 178
EV ++TP T + E TK E T P E+PA + E PKEE A EEEE P E
Sbjct: 105 EVPEETPDQETNSPVVEETK-EATEPAEEPAPKPEPAPADEAPKEEGP--AAEEEEKPAE 161
Query: 179 TNEATEVTEEVK 214
E E+ +
Sbjct: 162 AKVKVETDEKAE 173
Score = 68 (23.9 bits), Expect = 0.17, Sum P(2) = 0.16
Identities = 22/60 (36%), Positives = 29/60 (48%), Frame = +2
Query: 98 ATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEET 277
A V+ T EE T+E+ + EE PVE A T E P EE P+ E + EE+
Sbjct: 4 AEVVSATPALSEEKTEESVKAEETPVEEVAAAPPTPE--PVAEE---PKEAETAAVPEES 58
Score = 53 (18.7 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 12/26 (46%), Positives = 14/26 (53%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEETQTE 363
P PAP +E P+E PA EE E
Sbjct: 137 PEPAPADEA-PKEEGPAAEEEEKPAE 161
Score = 50 (17.6 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 13/34 (38%), Positives = 19/34 (55%), Frame = +1
Query: 286 PNPAPVEE----QKP---EENKPAETVEETQTEQ 366
P PAP +E + P EE KPAE + +T++
Sbjct: 137 PEPAPADEAPKEEGPAAEEEEKPAEAKVKVETDE 170
Score = 45 (15.8 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 11/27 (40%), Positives = 15/27 (55%), Frame = +1
Query: 280 RNPNPAPVEEQKPEENK-PAETVEETQ 357
+ PA EE+KP E K ET E+ +
Sbjct: 147 KEEGPAAEEEEKPAEAKVKVETDEKAE 173
Score = 38 (13.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 8/25 (32%), Positives = 11/25 (44%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTEQ 366
PAP E P + P E + E+
Sbjct: 133 PAPKPEPAPADEAPKEEGPAAEEEE 157
Score = 37 (13.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 7/19 (36%), Positives = 12/19 (63%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQ 357
V E+ P++ + VEET+
Sbjct: 106 VPEETPDQETNSPVVEETK 124
Score = 36 (12.7 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 7/15 (46%), Positives = 10/15 (66%), Frame = +1
Query: 295 APVEEQKPEENKPAE 339
+PV E+ E +PAE
Sbjct: 117 SPVVEETKEATEPAE 131
>gi|3378467|emb|CAA07564.1| (AJ007576) pRIB1 protein [Ribes nigrum]
Length = 173
Frame 2 hits (HSPs): ___________________________________________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 34/93 (36%), Positives = 41/93 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE--EEAPVE 178
E V P + T A V EETT EQ + EEP E K E EE P
Sbjct: 29 EAVVVTAPPPSETAEPAAAVVAEEETTKEQEEPPAVSAEEPVAPAEVETKVEVTEEPPKV 88
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEET 277
+ EV E K VE PA E+T +EE E++
Sbjct: 89 EEKPAEVEEAPKETVETEPAVEKTIKEETVEDS 121
Score = 114 (40.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 35/82 (42%), Positives = 42/82 (51%), Frame = +2
Query: 41 TENEATEVTKIEETTPEQPATQVTTTEEP---KEETTKEAKEEEEAPVETNEATEVTEEV 211
T+ EA VT + +PA V EE +EE + EE AP E EVTEE
Sbjct: 26 TKEEAVVVTAPPPSETAEPAAAVVAEEETTKEQEEPPAVSAEEPVAPAEVETKVEVTEE- 84
Query: 212 KPEVEENPAPERTEEEELKEETKET 286
P+VEE PA E EE +ET ET
Sbjct: 85 PPKVEEKPA----EVEEAPKETVET 105
Score = 110 (38.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/94 (39%), Positives = 48/94 (51%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + TT + E V+ E P + T+V TEEP + K A E EEAP ET E
Sbjct: 48 VVAEEETTKEQEEPPAVSAEEPVAPAEVETKVEVTEEPPKVEEKPA-EVEEAPKETVETE 106
Query: 194 EVTEE-VKPE-VEEN---PAPERTEEEELKEETKET 286
E+ +K E VE++ PAPE E E KE+ T
Sbjct: 107 PAVEKTIKEETVEDSVVAPAPE-PEAEVPKEKVIAT 141
Score = 106 (37.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 35/96 (36%), Positives = 47/96 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKI-EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
+VEV ++ P E + EV + +ET +PA + T EE E++ E EA V
Sbjct: 78 KVEVTEEPPKV--EEKPAEVEEAPKETVETEPAVEKTIKEETVEDSVVAPAPEPEAEVPK 135
Query: 182 NEA---TEVTEEV-KPEVEENPAPERTEEEELKEETKE 283
+ TE TEE K VEE TEE E+ EE E
Sbjct: 136 EKVIATTETTEEEEKVAVEEVEVKVETEEGEVTEEKTE 173
Score = 98 (34.5 bits), Expect = 0.0036, P = 0.0036
Identities = 32/99 (32%), Positives = 47/99 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKI-EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
+VEV ++ P E + EV + +ET +PA + T EE E++ E EA V
Sbjct: 78 KVEVTEEPPKV--EEKPAEVEEAPKETVETEPAVEKTIKEETVEDSVVAPAPEPEAEVPK 135
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
+ TE E EE A EE E+K ET+E + +
Sbjct: 136 EKVIATTETT--EEEEKVA---VEEVEVKVETEEGEVTEE 170
Score = 95 (33.4 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 30/82 (36%), Positives = 42/82 (51%), Frame = +2
Query: 41 TENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPE 220
T+ EA VT + +PA V +EETTKE +EE P + E EV+ +
Sbjct: 26 TKEEAVVVTAPPPSETAEPAAAVVA----EEETTKE---QEEPPAVSAEEPVAPAEVETK 78
Query: 221 VEENPAPERTEEE--ELKEETKET 286
VE P + EE+ E++E KET
Sbjct: 79 VEVTEEPPKVEEKPAEVEEAPKET 102
Score = 46 (16.2 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 11/33 (33%), Positives = 17/33 (51%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTEQFLV*ERLE 390
PAP E + + K T E T+ E+ + E +E
Sbjct: 125 PAPEPEAEVPKEKVIATTETTEEEEKVAVEEVE 157
>gi|1170600|sp|P43393|K501_ACTCH FRUIT PROTEIN PKIWI501 >gi|1085868|pir||S48035
hypothetical protein - kiwi fruit >gi|450239|gb|AAA53071.1|
(L27810) pKIWI501 [Actinidia deliciosa]
Length = 184
Frame 2 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): _______
Annotated Domains: _______ _______________________________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
__________________
Annotated Domains:
PRODOM PD050910: K501_ACTCH 1..26
PRODOM PD000540: H1(18) O76786(11) TONB(10) 31..172
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 39/100 (39%), Positives = 47/100 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENE-ATEVTKIEETTPEQ-----PATQVTTTEEPKEETTKEAKEEEEA 169
VEV T + ENE A EVTK +E PE PA TEEP E+ EA E E
Sbjct: 4 VEVTPAV-TALPENETADEVTKPQEPQPEAAVAAPPAPAEPVTEEP-EKAAPEAVEAPEE 61
Query: 170 PVETN--EATEVTEEVKPEVEE-NPAPERTEEEELKEETKET 286
P T+ + EV E + VEE PE E +E + T
Sbjct: 62 PAATDAKDPAEVAEAEEEVVEEPQEVPEEPVAEAAAKEVEAT 103
Score = 105 (37.0 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/103 (40%), Positives = 48/103 (46%), Frame = +2
Query: 8 VEVAQQTPTTVTENE-ATEVTKIEETTPEQ-----PATQVTTTEEPKEETTKEAKEEEEA 169
VEV T + ENE A EVTK +E PE PA TEEP E+ EA E E
Sbjct: 4 VEVTPAV-TALPENETADEVTKPQEPQPEAAVAAPPAPAEPVTEEP-EKAAPEAVEAPEE 61
Query: 170 PVETN-----EATEVTEEV--KP-EVEENPAPERTEEEELKEETK 280
P T+ E E EEV +P EV E P E +E E K
Sbjct: 62 PAATDAKDPAEVAEAEEEVVEEPQEVPEEPVAEAAAKEVEATEGK 106
Score = 78 (27.5 bits), Expect = 3.4, P = 0.97
Identities = 31/94 (32%), Positives = 40/94 (42%), Frame = +2
Query: 5 EVEVAQQTPTTV--TENEATEVTKIEETTPEQPATQVTTTEEPKEETTK--EAKEEEEAP 172
E VA+ V TE +A ++++ TPE AT EE T EA E P
Sbjct: 89 EEPVAEAAAKEVEATEGKAEPTGEMKDKTPE--ATDAPEAPAAAEEPTDAPEAPAVAEEP 146
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
EA V EE PE +E E EE + +T
Sbjct: 147 TNAPEAPAVGEE--PEAKEGKPDEAVEEASTEVPVDKT 182
Score = 76 (26.8 bits), Expect = 0.0032, Sum P(2) = 0.0032
Identities = 25/84 (29%), Positives = 35/84 (41%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E A + P + EV + EE E+P E P+E + A +E EA
Sbjct: 54 EAVEAPEEPAATDAKDPAEVAEAEEEVVEEPQ------EVPEEPVAEAAAKEVEATEGKA 107
Query: 185 EATEVTEEVKPEVEENP-APERTEE 256
E T ++ PE + P AP EE
Sbjct: 108 EPTGEMKDKTPEATDAPEAPAAAEE 132
Score = 71 (25.0 bits), Expect = 0.017, Sum P(2) = 0.017
Identities = 27/79 (34%), Positives = 38/79 (48%), Frame = +2
Query: 59 EVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENP 235
EVT PE + A +VT +EP+ E A AP E TE E+ PE E P
Sbjct: 5 EVTPAVTALPENETADEVTKPQEPQPEAAVAAPP---APAEP--VTEEPEKAAPEAVEAP 59
Query: 236 A-PERTEEEELKE--ETKETRIQ 295
P T+ ++ E E +E ++
Sbjct: 60 EEPAATDAKDPAEVAEAEEEVVE 82
Score = 70 (24.6 bits), Expect = 0.023, Sum P(2) = 0.023
Identities = 26/88 (29%), Positives = 36/88 (40%), Frame = +2
Query: 32 TTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV--TE 205
T E A E + E A E +EE +E +E E PV A EV TE
Sbjct: 45 TEEPEKAAPEAVEAPEEPAATDAKDPAEVAEAEEEVVEEPQEVPEEPVAEAAAKEVEATE 104
Query: 206 -EVKPEVE-ENPAPERTEEEELKEETKE 283
+ +P E ++ PE T+ E +E
Sbjct: 105 GKAEPTGEMKDKTPEATDAPEAPAAAEE 132
Score = 60 (21.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 13/24 (54%), Positives = 15/24 (62%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PA EE + +E KP E VEE TE
Sbjct: 153 PAVGEEPEAKEGKPDEAVEEASTE 176
>gi|11691639|emb|CAC18641.1| (AJ278989) RS2 protein [Beta vulgaris]
Length = 158
Frame 2 hits (HSPs): ________________________________________________
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 41/103 (39%), Positives = 48/103 (46%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIE----ETTP-EQPA--TQVTTTEEPKEETTKEAKEEE-E 166
EVAQ TP T+ EV K E ET E PA T+ EE E EA E E
Sbjct: 4 EVAQSTPLPETQ-APIEVIKAEAPATETVEAEAPAAVTEAPAAEETPAEVAAEATEVAVE 62
Query: 167 APVETNE-ATEVT--EEVKPEVEENPAPERTEEEELKEETKETR 289
APVET A E +E P+VE P E+ EEE +E +
Sbjct: 63 APVETEAPAVEAAPEKEAAPQVEAEPVVEKKEEEAAPPAIEEKK 106
Score = 108 (38.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 38/102 (37%), Positives = 50/102 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE--PKEETTK--EAKEEEEAP 172
E A++TP V EATEV E PA + +E P+ E E KEEE AP
Sbjct: 41 EAPAAEETPAEVAA-EATEVAVEAPVETEAPAVEAAPEKEAAPQVEAEPVVEKKEEEAAP 99
Query: 173 --VETNEAT-EVTEEVKP-EVEENPAPERTEEEELKEETKETRI 292
+E +A E T E P E PA E ++ EE+K T+E +
Sbjct: 100 PAIEEKKAVVEETSEAAPTEAAAAPAEEASKVEEVKP-TEEPAV 142
Score = 103 (36.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 36/84 (42%), Positives = 40/84 (47%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN-E 187
EVAQ TP + E +A IE E PAT+ E P T EA EE P E E
Sbjct: 4 EVAQSTP--LPETQAP----IEVIKAEAPATETVEAEAPAAVT--EAPAAEETPAEVAAE 55
Query: 188 ATEVTEEVKPEVEENPAPERTEEEE 262
ATEV E E E PA E E+E
Sbjct: 56 ATEVAVEAPVETEA-PAVEAAPEKE 79
Score = 76 (26.8 bits), Expect = 4.1, P = 0.98
Identities = 28/89 (31%), Positives = 36/89 (40%), Frame = +2
Query: 5 EVEVAQQTPTT--VTENEAT---EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEA 169
E V + P E EA E + E E+ A ++ E T EA E A
Sbjct: 62 EAPVETEAPAVEAAPEKEAAPQVEAEPVVEKKEEEAAPPAIEEKKAVVEETSEAAPTEAA 121
Query: 170 PVETNEATEVTEEVKPEVEENPAPERTEEE 259
EA++V EEVKP E A E T +
Sbjct: 122 AAPAEEASKV-EEVKPTEEPAVAAEETSTD 150
Score = 51 (18.0 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 12/21 (57%), Positives = 14/21 (66%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTE 363
VEE KP E +PA EET T+
Sbjct: 131 VEEVKPTE-EPAVAAEETSTD 150
>gi|5454190|gb|AAD43605.1|AC005698_4 (AC005698) T3P18.4 [Arabidopsis thaliana]
Length = 152
Frame 2 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 38/112 (33%), Positives = 55/112 (49%), Frame = +2
Query: 8 VEVAQQTPTTVTEN---------EATEVTKIEETTP-----EQPATQVTTTEEPKEETTK 145
+EV Q TP EN E+ EVT + E+ P Q +VTT + EET K
Sbjct: 4 IEVEQVTPVAA-ENIEVPPPKAVESEEVTTVSESLPAPVTESQAPVEVTTKDLVVEETEK 62
Query: 146 EAKEEEEAPVETNEATEVTEEVKPEVEENPAPE-RTEEEELKEETKETRIQHQ 301
+E EEA VET E E+ ++ + VE E ++ EE+ E KE ++ +
Sbjct: 63 PIEETEEAQVETPEVVEIKKDEEAPVETPVVVEDESKTEEVVEAKKEEEVEEK 115
Score = 116 (40.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 40/104 (38%), Positives = 55/104 (52%), Frame = +2
Query: 14 VAQQTPTTVTENEA-TEVTKIEETTPEQPATQVTTTEEPKEETTK--EAKEEEEAPVETN 184
V++ P VTE++A EVT ++ E+ + TEE + ET + E K++EEAPVET
Sbjct: 33 VSESLPAPVTESQAPVEVTT-KDLVVEETEKPIEETEEAQVETPEVVEIKKDEEAPVETP 91
Query: 185 EATE---VTEEV-----KPEVEENPAPER--TEEEELKEETKETR 289
E TEEV + EVEE E EEE K E +E +
Sbjct: 92 VVVEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKKPEAEEEK 136
Score = 102 (35.9 bits), Expect = 0.00018, P = 0.00018
Identities = 37/80 (46%), Positives = 42/80 (52%), Frame = +2
Query: 5 EVEVAQ-QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE- 178
E E AQ +TP E E+ K EE E P V +E K E EAK+EEE +
Sbjct: 66 ETEEAQVETP------EVVEIKKDEEAPVETP---VVVEDESKTEEVVEAKKEEEVEEKK 116
Query: 179 TNEATEVTEEVK-PEVEEN-PAPE 244
T EA V EE K PE EE PA E
Sbjct: 117 TEEAPVVVEEEKKPEAEEEKPAVE 140
Score = 94 (33.1 bits), Expect = 0.0087, P = 0.0086
Identities = 36/89 (40%), Positives = 42/89 (47%), Frame = +2
Query: 5 EVEVAQ-QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E AQ +TP E E+ K EE E P V +E K E EAK+EEE VE
Sbjct: 66 ETEEAQVETP------EVVEIKKDEEAPVETP---VVVEDESKTEEVVEAKKEEE--VEE 114
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKE 271
+ TEE VEE PE EE+ E
Sbjct: 115 KK----TEEAPVVVEEEKKPEAEEEKPAVE 140
Score = 89 (31.3 bits), Expect = 0.056, P = 0.054
Identities = 31/87 (35%), Positives = 43/87 (49%), Frame = +2
Query: 5 EVEVAQ-QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E AQ +TP V E + E +E + ++ E K+E E K+ EEAPV
Sbjct: 66 ETEEAQVETPEVV-EIKKDEEAPVETPVVVEDESKTEEVVEAKKEEEVEEKKTEEAPVVV 124
Query: 182 NEATEV-TEEVKPEVEEN-PAP-ERTEE 256
E + EE KP VE + AP E+ +E
Sbjct: 125 EEEKKPEAEEEKPAVEASVTAPVEKADE 152
Score = 41 (14.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 15/25 (60%), Positives = 17/25 (68%), Frame = +1
Query: 295 APV---EEQKPE--ENKPAETVEETQT 360
APV EE+KPE E KPA VE + T
Sbjct: 120 APVVVEEEKKPEAEEEKPA--VEASVT 144
>gi|1076839|pir||S49313 protein kinase - slime mold (Dictyostelium discoideum)
>gi|1076840|pir||S52076 protein kinase - slime mold (Dictyostelium
discoideum) >gi|551446|emb|CAA86053.1| (Z37981) protein kinase
[Dictyostelium discoideum]
Length = 1094
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): ________
Annotated Domains: _____________ ____________
__________________________________________________
Database sequence: | | | | | | | | | 1094
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
DOMO DM00761: PROTEIN-TYROSINEKINASESRC 2..21
DOMO DM00004: PROTEINKINASEDOMAIN 23..266
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 733..778
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 780..828
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 830..881
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 883..922
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 924..968
PROSITE PROTEIN_KINASE_ST: Serine/Threonine prot 142..154
__________________
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 43/118 (36%), Positives = 61/118 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE---EAPV 175
EV+V ++ PT V E +A E +EE E+P +V EEP EE E EE E PV
Sbjct: 730 EVKVEEE-PTNVEEVKAEE--PVEEVKVEEPVEEVKA-EEPVEEVKAEEPVEEVKTEEPV 785
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
E + E EEVK VEE P E EE ++E +E ++ + + T +P+ +
Sbjct: 786 EEVKVEEPVEEVK--VEE-PVEEVEAEESVQEPVEEVKVDEP--TKVEEPTKVEEPIEEV 840
Query: 356 K 358
K
Sbjct: 841 K 841
Score = 119 (41.9 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 39/103 (37%), Positives = 55/103 (53%), Frame = +2
Query: 5 EVEVAQQTPTTVTEN----EATEVTKIEETTPE-QPATQVTTTEEPK-EETTKEAKEEEE 166
+V+ PT V E+ +A E K+EE E + + T EE K EE +E K EE
Sbjct: 698 KVDEPVDEPTKVEESVEQVKAEEPNKVEELVEEVKVEEEPTNVEEVKAEEPVEEVKVEE- 756
Query: 167 APVETNEATEVTEEVKPE--VEENPAPERTEEEELKEETKETRIQ 295
PVE +A E EEVK E VEE E EE +++E +E +++
Sbjct: 757 -PVEEVKAEEPVEEVKAEEPVEEVKTEEPVEEVKVEEPVEEVKVE 800
Score = 118 (41.5 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 43/107 (40%), Positives = 54/107 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTP-EQPATQVTTTEEPK-EETTKEAKEEE----E 166
EVE + V E + E TK+EE T E+P +V E K EE+ +E K EE E
Sbjct: 805 EVEAEESVQEPVEEVKVDEPTKVEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVE 864
Query: 167 APVET---NEATEV---TEEVKPE---VEENPAPERTEEEELKEETK 280
PVE E T+V E+VK E VEE A E T+ EE E+ K
Sbjct: 865 EPVEEIKPEEPTKVEESVEDVKVEDVKVEEVKAEEPTKAEESVEDVK 911
Score = 117 (41.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 36/112 (32%), Positives = 55/112 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTP-EQPATQVTTTEEPK-EETTKEAKEEEEAPVE 178
EVE + V E + E TK+EE T E+P +V E K EE+ +E K EE VE
Sbjct: 805 EVEAEESVQEPVEEVKVDEPTKVEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVE 864
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLK 340
E EE+KPE E E E+ ++ E+ K ++ + +++ +K
Sbjct: 865 -----EPVEEIKPE-EPTKVEESVEDVKV-EDVKVEEVKAEEPTKAEESVEDVK 911
Score = 115 (40.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 34/79 (43%), Positives = 40/79 (50%), Frame = +2
Query: 59 EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE---EAPVETNEATEVTEEVKPE--V 223
E T +EE E+P +V EEP EE E EE E PVE + E EEVK E V
Sbjct: 736 EPTNVEEVKAEEPVEEVKV-EEPVEEVKAEEPVEEVKAEEPVEEVKTEEPVEEVKVEEPV 794
Query: 224 EENPAPERTEEEELKEETKE 283
EE E EE E +E +E
Sbjct: 795 EEVKVEEPVEEVEAEESVQE 814
Score = 115 (40.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 37/106 (34%), Positives = 55/106 (51%), Frame = +2
Query: 5 EVEVAQQTPT---TVTENEATEVTK-IEETTPEQPATQVTTTEEPK--EETTKEAK-EEE 163
+VE +QT + E+T+V + ++E T + + + EEP EE +E K EEE
Sbjct: 677 KVETEEQTKEEHDVKVDEESTKVDEPVDEPTKVEESVEQVKAEEPNKVEELVEEVKVEEE 736
Query: 164 EAPVETNEATEVTEEVKPE--VEENPAPERTEEEELKEETKETRIQ 295
VE +A E EEVK E VEE A E EE + +E +E + +
Sbjct: 737 PTNVEEVKAEEPVEEVKVEEPVEEVKAEEPVEEVKAEEPVEEVKTE 782
Score = 109 (38.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 37/106 (34%), Positives = 52/106 (49%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKI----EETTPEQPATQV----TTTEEPKEETTK-EAKEEEEAP 172
QQ P E E T+V + EE T E+ +V T +EP +E TK E E+
Sbjct: 659 QQQPKEEEEEEPTKVEDVKVETEEQTKEEHDVKVDEESTKVDEPVDEPTKVEESVEQVKA 718
Query: 173 VETNEATEVTEEVKPE-----VEENPAPERTEEEELKEETKETRIQ 295
E N+ E+ EEVK E VEE A E EE +++E +E + +
Sbjct: 719 EEPNKVEELVEEVKVEEEPTNVEEVKAEEPVEEVKVEEPVEEVKAE 764
Score = 106 (37.3 bits), Expect = 0.0012, P = 0.0012
Identities = 31/92 (33%), Positives = 45/92 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
+VE + + E + E TK+EE+ E + T EEP EE E + E VE
Sbjct: 826 KVEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVEEPVEEIKPEEPTKVEESVEDV 885
Query: 185 EATEV-TEEVKPEVEENPAPERTEEEELKEETK 280
+ +V EEVK E E A E E+ +++E K
Sbjct: 886 KVEDVKVEEVKAE-EPTKAEESVEDVKVEEPIK 917
Score = 105 (37.0 bits), Expect = 0.0016, P = 0.0016
Identities = 35/113 (30%), Positives = 51/113 (45%), Frame = +2
Query: 11 EVAQQTPTT-VTENEATEVTK----IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPV 175
EV + P V E E K +EE E+P +V EEP EE EA+E + PV
Sbjct: 760 EVKAEEPVEEVKAEEPVEEVKTEEPVEEVKVEEPVEEVKV-EEPVEEV--EAEESVQEPV 816
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKP 343
E + E T+ +P E P E EE K E ++ + + + ++KP
Sbjct: 817 EEVKVDEPTKVEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVEEPVEEIKP 872
Score = 105 (37.0 bits), Expect = 0.0016, P = 0.0016
Identities = 33/119 (27%), Positives = 66/119 (55%), Frame = +2
Query: 2 HEVEVAQQTPTTVTENEATEVTKIEETTP-EQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
++VE ++T V ++ T+ + ++ P E+ + T E+ K ET ++ KEE + V+
Sbjct: 635 NKVE-QEETNVVVANSQETDQQQQQQQQPKEEEEEEPTKVEDVKVETEEQTKEEHDVKVD 693
Query: 179 TNEATEVTEEV-KP-EVEENPAPERTEEEELKEE-TKETRIQHQWRNRSQRRTNQLKPLR 349
E+T+V E V +P +VEE+ + EE EE +E +++ + N + + + P+
Sbjct: 694 -EESTKVDEPVDEPTKVEESVEQVKAEEPNKVEELVEEVKVEEEPTNVEEVKAEE--PVE 750
Query: 350 KPK 358
+ K
Sbjct: 751 EVK 753
Score = 103 (36.3 bits), Expect = 0.0077, P = 0.0076
Identities = 29/115 (25%), Positives = 54/115 (46%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
E +++ V + E V + T +Q Q ++PKEE +E + E+ VET E
Sbjct: 628 EKQKESENKVEQEETNVVVANSQETDQQQQQQ----QQPKEEEEEEPTKVEDVKVETEEQ 683
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
T+ +VK + E E +E EE+ E +++ + N+ + ++K +P
Sbjct: 684 TKEEHDVKVDEESTKVDEPVDEPTKVEESVE-QVKAEEPNKVEELVEEVKVEEEP 737
Score = 95 (33.4 bits), Expect = 0.25, P = 0.22
Identities = 34/91 (37%), Positives = 44/91 (48%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPK--EETTKEAKEEEEAPVETN 184
EV + P E E + +EE ++P T EEP EE +E K EE VE +
Sbjct: 796 EVKVEEPVEEVEAEESVQEPVEEVKVDEP----TKVEEPTKVEEPIEEVKVEEPTKVEES 851
Query: 185 -EATEVTEEVKPE--VEENPAPERTEEEELKEETK 280
E +V E K E VEE E T+ EE E+ K
Sbjct: 852 IEEVKVEEPTKVEEPVEEIKPEEPTKVEESVEDVK 886
Score = 90 (31.7 bits), Expect = 1.3, P = 0.73
Identities = 31/88 (35%), Positives = 43/88 (48%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQ-PATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
E+ + PT V E+ E K+E+ E+ A + T EE E+ E + E PV+ E
Sbjct: 869 EIKPEEPTKV--EESVEDVKVEDVKVEEVKAEEPTKAEESVEDVKVEEPIKVEEPVKVEE 926
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEE 274
+V E VK VEE P + EE EE
Sbjct: 927 PVKVEEPVK--VEE---PIKVEEPIKVEE 950
Score = 88 (31.0 bits), Expect = 2.3, P = 0.90
Identities = 33/91 (36%), Positives = 44/91 (48%), Frame = +2
Query: 5 EVEVAQQTPTT--VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE----E 166
EV+V + T V E + E TK+EE+ + V E EE TK + E E
Sbjct: 854 EVKVEEPTKVEEPVEEIKPEEPTKVEESVEDVKVEDVKVEEVKAEEPTKAEESVEDVKVE 913
Query: 167 APVETNEATEVTEEVKPEVEENPAPERTEEEELKEE 274
P++ E +V E VK VEE P + EE EE
Sbjct: 914 EPIKVEEPVKVEEPVK--VEE---PVKVEEPIKVEE 944
Score = 87 (30.6 bits), Expect = 3.2, P = 0.96
Identities = 37/114 (32%), Positives = 52/114 (45%), Frame = +2
Query: 11 EVAQQTPTTVTEN-EATEV--TKIEETTPEQPATQVTTTEEPK-EETTK-EAKEEEEAPV 175
E+ + PT V E+ E +V K+EE E+P + E+ K EE K E + E PV
Sbjct: 869 EIKPEEPTKVEESVEDVKVEDVKVEEVKAEEPTKAEESVEDVKVEEPIKVEEPVKVEEPV 928
Query: 176 ETNEATEVTEEVKPE----VEEN---PAPERTEE-----EELKEETKETRIQHQ 301
+ E +V E +K E VEE P + EE E +K E +Q Q
Sbjct: 929 KVEEPVKVEEPIKVEEPIKVEEPIKVEEPIKVEEPIKVEEPVKVEVASPVVQEQ 982
Score = 86 (30.3 bits), Expect = 4.3, P = 0.99
Identities = 38/128 (29%), Positives = 58/128 (45%), Frame = +2
Query: 11 EVAQQTPTTVTEN----EATEVTKIEETTP-EQPAT--QVTTTEEP-K-EETTK-EAKEE 160
EV + PT E+ + E K+EE E+P + EEP K EE K E +
Sbjct: 894 EVKAEEPTKAEESVEDVKVEEPIKVEEPVKVEEPVKVEEPVKVEEPIKVEEPIKVEEPIK 953
Query: 161 EEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ-- 334
E P++ E +V E VK EV E+ ++E K E T + Q+ +N
Sbjct: 954 VEEPIKVEEPIKVEEPVKVEVASPVVQEQPPQQEEKPEVVSTSTI-TIASSPQQSSNSPP 1012
Query: 335 LKPLRKPKQ 361
P+++P+Q
Sbjct: 1013 STPVKQPQQ 1021
Score = 61 (21.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 17/35 (48%), Positives = 22/35 (62%), Frame = +1
Query: 298 PVEEQKPEE-NKPAETVEETQTEQFLV*ERLEA*AP 402
PVEE KPEE K E+VE+ + E V E ++A P
Sbjct: 866 PVEEIKPEEPTKVEESVEDVKVEDVKV-EEVKAEEP 900
Score = 51 (18.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 11/24 (45%), Positives = 16/24 (66%), Frame = +1
Query: 298 PVEEQKPEE-NKPAETVEETQTEQ 366
P+EE K EE K E++EE + E+
Sbjct: 836 PIEEVKVEEPTKVEESIEEVKVEE 859
Score = 50 (17.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/27 (51%), Positives = 16/27 (59%), Frame = +1
Query: 298 PVEEQKPEEN----KPAETVEETQTEQ 366
PVEE K EE K E VEE +TE+
Sbjct: 757 PVEEVKAEEPVEEVKAEEPVEEVKTEE 783
Score = 45 (15.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 12/23 (52%), Positives = 14/23 (60%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTEQ 366
PVEE K EE P E VE ++ Q
Sbjct: 793 PVEEVKVEE--PVEEVEAEESVQ 813
Score = 45 (15.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/27 (51%), Positives = 16/27 (59%), Frame = +1
Query: 298 PVEEQK---P-EENKPAETVEETQTEQ 366
PVEE K P EE K E VEE + E+
Sbjct: 784 PVEEVKVEEPVEEVKVEEPVEEVEAEE 810
Score = 45 (15.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/34 (47%), Positives = 20/34 (58%), Frame = +1
Query: 298 PVEEQKPEEN----KPAETVEETQTEQFLV*ERLEA 393
PVEE K EE K E VEE + E+ + E +EA
Sbjct: 775 PVEEVKTEEPVEEVKVEEPVEEVKVEEPV--EEVEA 808
Score = 45 (15.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 13/27 (48%), Positives = 15/27 (55%), Frame = +1
Query: 298 PVEEQKPEEN----KPAETVEETQTEQ 366
PVEE K EE K E VEE + E+
Sbjct: 766 PVEEVKAEEPVEEVKTEEPVEEVKVEE 792
>gi|2133786|pir||I51116 NF-180 - sea lamprey >gi|632549|gb|AAA80106.1| (U19361)
NF-180 [Petromyzon marinus]
Length = 1110
Frame 2 hits (HSPs): _______________________
Frame 1 hits (HSPs): ____ __ _____
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | | | | 1110
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
PROSITE IF: Intermediate filaments signature. 400..408
__________________
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 37/104 (35%), Positives = 49/104 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEP---KEETTKEAKEEEEAPV 175
E E ++ V + EA E ++EE E+ + EE +EE E +E EEA
Sbjct: 517 EAEAEEEAEEEVEKEEAEEA-EVEEAEAEETEAEAAEEEEEAEGEEEAEAEGEEAEEAEE 575
Query: 176 ETNEATEVTE--EVKPEVEENPAP-ERTEEEELKEETKETRIQHQ 301
EA E E E K EVEE A E EEEE +EE E + +
Sbjct: 576 VEEEAIEKAEAAEAKAEVEEEEAEAEEEEEEEAEEEEVEAETKEE 620
Score = 120 (42.2 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 38/103 (36%), Positives = 49/103 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEP---KEETTKEAKEEEEAPV 175
E E ++ V + EA E ++EE E+ + EE +EE E +E EEA
Sbjct: 517 EAEAEEEAEEEVEKEEAEEA-EVEEAEAEETEAEAAEEEEEAEGEEEAEAEGEEAEEAEE 575
Query: 176 ETNEATEVTE--EVKPEVEENPAP------ERTEEEELKEETKE 283
EA E E E K EVEE A E EEEE++ ETKE
Sbjct: 576 VEEEAIEKAEAAEAKAEVEEEEAEAEEEEEEEAEEEEVEAETKE 619
Score = 117 (41.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 33/96 (34%), Positives = 43/96 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E + EA E ++EE E+ E +EE E +EEEEA E
Sbjct: 554 EEEAEGEEEAEAEGEEAEEAEEVEEEAIEKAEAAEAKAEVEEEEAEAEEEEEEEAEEEEV 613
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRI 292
EA E EEV+ E E E EEE +EE +E +
Sbjct: 614 EA-ETKEEVEAEAEVEEEGEAAEEEAEEEEAEEEEV 648
Score = 114 (40.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 33/103 (32%), Positives = 45/103 (43%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
E A+ E E E IE+ + +V E EE +E EEEE ET E
Sbjct: 561 EEAEAEGEEAEEAEEVEEEAIEKAEAAEAKAEVEEEEAEAEEEEEEEAEEEEVEAETKEE 620
Query: 191 TEVTEEVKPE---VEENPAPERTEEEEL---KEETKETRIQHQ 301
E EV+ E EE E EEEE+ K +T+E ++ +
Sbjct: 621 VEAEAEVEEEGEAAEEEAEEEEAEEEEVTSKKAKTQEAEVEEE 663
Score = 113 (39.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 31/91 (34%), Positives = 45/91 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E EV ++ T EA + E E+ A + E +EE +EA EE EA E
Sbjct: 709 EEEVKEEEVTKSDAEEAEAEAEEEAAKSEEEAAEEAKDEAEEEEAEEEAVEETEAATEEA 768
Query: 185 EATEVTEEVKPE--VEENPAPERTEEEELKE 271
EA E +++ KPE V+E+ AP E ++ E
Sbjct: 769 EAKEASDDEKPEEEVKESEAPVAPEAKKAPE 799
Score = 113 (39.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 35/96 (36%), Positives = 47/96 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E EV ++ E E E + EE T ++ TQ EE + E EA+ EEEA E
Sbjct: 624 EAEVEEEGEAAEEEAEEEEAEE-EEVTSKKAKTQEAEVEEEEAEAA-EAEAEEEAEEEAG 681
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEE-TKETRI 292
E +V E K E EE+ EE+E +EE KE +
Sbjct: 682 EE-DVEAESKEEEEEDSKEADAEEDEAEEEEVKEEEV 717
Score = 111 (39.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 34/92 (36%), Positives = 46/92 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTK-EAKEE--EEAPV 175
E EV ++ E E E + EE T ++ TQ EE + E + EA+EE EEA
Sbjct: 624 EAEVEEEGEAAEEEAEEEEAEE-EEVTSKKAKTQEAEVEEEEAEAAEAEAEEEAEEEAGE 682
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEE 274
E EA EE + E + + EEEE+KEE
Sbjct: 683 EDVEAESKEEEEEDSKEADAEEDEAEEEEVKEE 715
Score = 110 (38.7 bits), Expect = 0.00047, P = 0.00047
Identities = 31/110 (28%), Positives = 49/110 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
EVE ++ E E E ++E T E+ + EE E +EA+EEE E
Sbjct: 592 EVE-EEEAEAEEEEEEEAEEEEVEAETKEEVEAEAEVEEEG-EAAEEEAEEEEAEEEEVT 649
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
T+E + E EE A E EEE +EE E ++ + + + + +
Sbjct: 650 SKKAKTQEAEVEEEEAEAAEAEAEEEAEEEAGEEDVEAESKEEEEEDSKE 699
Score = 106 (37.3 bits), Expect = 0.0012, P = 0.0012
Identities = 36/112 (32%), Positives = 51/112 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTT-TEEPKEETTKEAK-EEEEAPVETNEAT 193
Q+ E EA E EE E V ++E +EE +KEA EE+EA E +
Sbjct: 656 QEAEVEEEEAEAAEAEAEEEAEEEAGEEDVEAESKEEEEEDSKEADAEEDEAEEEEVKEE 715
Query: 194 EVT----EEVKPEVEENPAPERTEE-EELKEETKETRIQHQWRNRSQRRTNQ 334
EVT EE + E EE A E EE K+E +E + + ++ T +
Sbjct: 716 EVTKSDAEEAEAEAEEEAAKSEEEAAEEAKDEAEEEEAEEEAVEETEAATEE 767
Score = 105 (37.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 32/94 (34%), Positives = 44/94 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEP-KEETTKEAKEEEEAPVET 181
EV A+ P E + E + EE E+ + E+ ++E EA+EE E VE
Sbjct: 471 EVMEAKAAPVVSAEKDEEEEEEEEEKEEEEAEAEEEEEEDRGRKEGEAEAEEEAEEEVEK 530
Query: 182 NEATEV-TEEVKPEVEENPAPERTEEEELKEETK 280
EA E EE + E E A E EE E +EE +
Sbjct: 531 EEAEEAEVEEAEAEETEAEAAEEEEEAEGEEEAE 564
Score = 105 (37.0 bits), Expect = 0.0016, P = 0.0016
Identities = 35/118 (29%), Positives = 53/118 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEA-KEEEEAPVET 181
E E ++ E +A E EE E+ T+ + EE + E +EA K EEEA E
Sbjct: 686 EAESKEEEEEDSKEADAEEDEAEEEEVKEEEVTK-SDAEEAEAEAEEEAAKSEEEAAEEA 744
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
+ E E + VEE A TEE E KE + + + + + + + K +PK
Sbjct: 745 KDEAEEEEAEEEAVEETEAA--TEEAEAKEASDDEKPEEEVKESEAPVAPEAKKAPEPK 801
Score = 103 (36.3 bits), Expect = 0.0011, Sum P(2) = 0.0011
Identities = 33/113 (29%), Positives = 48/113 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E EA + EE ++ A + E EET EA EEEE
Sbjct: 502 EAEEEEEEDRGRKEGEAEAEEEAEEEVEKEEAEEAEVEEAEAEETEAEAAEEEEEAEGEE 561
Query: 185 EATEVTEEVKP--EVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLK 340
EA EE + EVEE A E+ E E K E +E + + + +++
Sbjct: 562 EAEAEGEEAEEAEEVEEE-AIEKAEAAEAKAEVEEEEAEAEEEEEEEAEEEEVE 614
Score = 102 (35.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/86 (37%), Positives = 39/86 (45%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE---EEAPVETNEATEVTEEVK 214
E E E + EE + + EE +EE KE EE EEA E EA EE +
Sbjct: 497 EEEEAEAEEEEEEDRGRKEGEAEAEEEAEEEVEKEEAEEAEVEEAEAEETEAEAAEEEEE 556
Query: 215 PEVEENPAPERTEEEELKEETKETRIQ 295
E EE E E EE EE +E I+
Sbjct: 557 AEGEEEAEAEGEEAEEA-EEVEEEAIE 582
Score = 102 (35.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/97 (31%), Positives = 50/97 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E++V + + + + ++ + EE + A V+ ++ +EE +E KEEEEA
Sbjct: 448 EIKVESEPISAQLDTDLEDLAQ-EEVMEAKAAPVVSAEKDEEEEEEEEEKEEEEA----- 501
Query: 185 EATEVTEEVKPEVE-ENPAPERTEEEELKEETKETRIQ 295
EA E EE + E E A E EEE KEE +E ++
Sbjct: 502 EAEEEEEEDRGRKEGEAEAEEEAEEEVEKEEAEEAEVE 539
Score = 101 (35.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 35/98 (35%), Positives = 46/98 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTEN-EATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E A++ E EA E K E E A + E +EE E KEE EA E
Sbjct: 569 EAEEAEEVEEEAIEKAEAAEA-KAEVEEEEAEAEEEEEEEAEEEEVEAETKEEVEAEAEV 627
Query: 182 NE----ATEVTEEVKPEVEENPAPE-RTEEEELKEETKE 283
E A E EE + E EE + + +T+E E++EE E
Sbjct: 628 EEEGEAAEEEAEEEEAEEEEVTSKKAKTQEAEVEEEEAE 666
Score = 101 (35.6 bits), Expect = 0.025, P = 0.025
Identities = 38/126 (30%), Positives = 56/126 (44%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTT-TEEPKEETTKEAK-EEEEAPVETNEAT 193
Q+ E EA E EE E V ++E +EE +KEA EE+EA E +
Sbjct: 656 QEAEVEEEEAEAAEAEAEEEAEEEAGEEDVEAESKEEEEEDSKEADAEEDEAEEEEVKEE 715
Query: 194 EVT----EEVKPEVEENPAPERTEE-EELKEETKETRIQHQWRNRSQRRTNQLKPLR--- 349
EVT EE + E EE A E EE K+E +E + + ++ T + +
Sbjct: 716 EVTKSDAEEAEAEAEEEAAKSEEEAAEEAKDEAEEEEAEEEAVEETEAATEEAEAKEASD 775
Query: 350 --KPKQ 361
KP++
Sbjct: 776 DEKPEE 781
Score = 97 (34.1 bits), Expect = 0.062, Sum P(2) = 0.060
Identities = 32/80 (40%), Positives = 41/80 (51%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETT-KEAKEEEEA-PVETNEATEVTEEVKP 217
+ EA V K EE PE+ T+ EEPK+ K AK + P EA E E KP
Sbjct: 847 KKEAKPVEKEEE--PEESPTE----EEPKKPAAAKPAKAPAKPKPAPKAEAEEKPEPAKP 900
Query: 218 EVEENPAPERTEEEELKEETKE 283
+ PAP EEE+ KE+ +E
Sbjct: 901 -AQAKPAPAAEEEEDEKEDDEE 921
Score = 96 (33.8 bits), Expect = 0.091, Sum P(2) = 0.087
Identities = 28/96 (29%), Positives = 43/96 (44%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAK------EEEEAP 172
E +++PT + + +PA + E+P+ +AK EEE+
Sbjct: 857 EEPEESPTEEEPKKPAAAKPAKAPAKPKPAPKAEAEEKPEPAKPAQAKPAPAAEEEEDEK 916
Query: 173 VETNEATEVTEEVKPE----VEENPAPERTEEEELK 268
+ E E EEVKPE V+ PAP + EE+E K
Sbjct: 917 EDDEEEEEEVEEVKPEDAKPVKSKPAPAKEEEDEPK 952
Score = 93 (32.7 bits), Expect = 0.48, P = 0.38
Identities = 32/120 (26%), Positives = 48/120 (40%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEET-TKEAKEEEEAPVET 181
E E + +E EA E K E E V TE EE KEA ++E+ E
Sbjct: 724 EAEAEAEEEAAKSEEEAAEEAKDEAEEEEAEEEAVEETEAATEEAEAKEASDDEKPEEEV 783
Query: 182 NEA-TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQR-RTNQLKPLRKP 355
E+ V E K E AP++ +++ T E + + ++ + KP KP
Sbjct: 784 KESEAPVAPEAKKAPEPKAAPKKKAPAKVESPTSEPEDEPKAEVVEKKGKAEAPKPKAKP 843
Score = 89 (31.3 bits), Expect = 1.8, P = 0.83
Identities = 32/119 (26%), Positives = 54/119 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATE--VTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
E E A++ E EA E V + E T E A + + E+P+EE +E EAPV
Sbjct: 737 EEEAAEEAKDEAEEEEAEEEAVEETEAATEEAEAKEASDDEKPEEEV-----KESEAPVA 791
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
EA + E ++ PA + E ++E K ++ + +++ + KP K
Sbjct: 792 P-EAKKAPEPKAAPKKKAPAKVESPTSEPEDEPKAEVVEK--KGKAEAPKPKAKPAAAKK 848
Query: 359 Q 361
+
Sbjct: 849 E 849
Score = 87 (30.6 bits), Expect = 0.081, Sum P(2) = 0.078
Identities = 36/96 (37%), Positives = 45/96 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEE-----A 169
E E + T EA EV + E E A + E +E+ E+KEEEE A
Sbjct: 642 EAEEEEVTSKKAKTQEA-EVEEEEAEAAEAEAEEEAEEEAGEEDVEAESKEEEEEDSKEA 700
Query: 170 PVETNEATEVTEEVKPE-VEENPAPE---RTEEEELKEE 274
E +EA E EEVK E V ++ A E EEE K E
Sbjct: 701 DAEEDEAEE--EEVKEEEVTKSDAEEAEAEAEEEAAKSE 737
Score = 83 (29.2 bits), Expect = 0.29, Sum P(2) = 0.25
Identities = 31/88 (35%), Positives = 41/88 (46%), Frame = +2
Query: 38 VTENEAT---EVTKIEE--TTPEQ--PATQVTTTEEPKEETTKEAKEEE---EAPVETNE 187
V E+EA E K E P++ PA + T EP++E E E++ EAP +
Sbjct: 783 VKESEAPVAPEAKKAPEPKAAPKKKAPAKVESPTSEPEDEPKAEVVEKKGKAEAPKPKAK 842
Query: 188 ATEVTEEVKP-EVEENPAPERTEEEELK 268
+E KP E EE P TEEE K
Sbjct: 843 PAAAKKEAKPVEKEEEPEESPTEEEPKK 870
Score = 52 (18.3 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 13/29 (44%), Positives = 16/29 (55%), Frame = +1
Query: 286 PNPAP-VE-EQKPEENKPAETVEETQTEQ 366
P PAP E E+KPE KPA+ E+
Sbjct: 883 PKPAPKAEAEEKPEPAKPAQAKPAPAAEE 911
Score = 50 (17.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 15/34 (44%), Positives = 19/34 (55%), Frame = +1
Query: 286 PNPAP-VE-EQKPEENKPAET-----VEETQTEQ 366
P PAP E E+KPE KPA+ EE + E+
Sbjct: 883 PKPAPKAEAEEKPEPAKPAQAKPAPAAEEEEDEK 916
Score = 46 (16.2 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 10/20 (50%), Positives = 12/20 (60%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTE 363
EE+ EE AET EE + E
Sbjct: 605 EEEAEEEEVEAETKEEVEAE 624
Score = 44 (15.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 11/28 (39%), Positives = 16/28 (57%), Frame = +1
Query: 286 PNPAPVEEQ--KPEENKPAETVEETQTE 363
P PA EE+ K ++ + E VEE + E
Sbjct: 905 PAPAAEEEEDEKEDDEEEEEEVEEVKPE 932
Score = 40 (14.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 11/30 (36%), Positives = 14/30 (46%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQFLV*ERLEA 393
EE+ E + AE EE + E E EA
Sbjct: 560 EEEAEAEGEEAEEAEEVEEEAIEKAEAAEA 589
Score = 39 (13.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 9/23 (39%), Positives = 13/23 (56%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTE 363
A EE++ EE + E ET+ E
Sbjct: 598 AEAEEEEEEEAEEEEVEAETKEE 620
Score = 37 (13.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 8/20 (40%), Positives = 13/20 (65%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTE 363
EE+ EE+ AE+ EE + +
Sbjct: 677 EEEAGEEDVEAESKEEEEED 696
Score = 37 (13.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 7/22 (31%), Positives = 11/22 (50%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQ 357
P P ++ + KPA EE +
Sbjct: 951 PKPAKQPPKPKRKPARPKEEPE 972
>gi|7489869|pir||T30330 gelsolin-related protein GRP125 - slime mold
(Dictyostelium discoideum) >gi|4100186|gb|AAD00774.1| (U95159)
gelsolin-related protein GRP125 [Dictyostelium discoideum]
Length = 1087
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | | | 1087
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 148 (52.1 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 44/118 (37%), Positives = 63/118 (53%), Frame = +2
Query: 11 EVA-QQTPTTVTE---NEATEV---TKIEETTPEQPATQVTTTEEPKEETTKEAKEEE-- 163
EVA ++T + E +EATEV ++EE E+ + E +EE EAKEEE
Sbjct: 783 EVAKEETKEEIKEEVNDEATEVKEVNQVEEEVKEEEVKEEVKVEVKEEEVKGEAKEEEVK 842
Query: 164 EAPVETNEATEVTEEVKPEVEENPAPERTEE--EELKEETKETRIQHQWRNRSQRRTNQ 334
E V+ E E +EVK EV+E ++ EE EE+KEETKE + N+ + N+
Sbjct: 843 EEEVKEEEVKEEVKEVKEEVKEEVKQDKEEEVNEEIKEETKEEETKED-DNKEDEKVNE 900
Score = 147 (51.7 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 39/109 (35%), Positives = 57/109 (52%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE--EAPVETN 184
E+ ++ TE EV ++EE E+ + E +EE EAKEEE E V+
Sbjct: 792 EIKEEVNDEATE--VKEVNQVEEEVKEEEVKEEVKVEVKEEEVKGEAKEEEVKEEEVKEE 849
Query: 185 EATEVTEEVKPEVEENPAPERTEE--EELKEETKETRIQHQWRNRSQRRTNQ 334
E E +EVK EV+E ++ EE EE+KEETKE + N+ + N+
Sbjct: 850 EVKEEVKEVKEEVKEEVKQDKEEEVNEEIKEETKEEETKED-DNKEDEKVNE 900
Score = 127 (44.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 33/97 (34%), Positives = 49/97 (50%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE--EEAPVETN 184
++ ++ V E + E K EE E+ + E KEET +E KEE +EA E
Sbjct: 748 KIVEEVKEEVKEEDVKEEVK-EEEVKEEEVKEEEVKEVAKEETKEEIKEEVNDEA-TEVK 805
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
E +V EEVK E + +EEE+K E KE ++ +
Sbjct: 806 EVNQVEEEVKEEEVKEEVKVEVKEEEVKGEAKEEEVKEE 844
Score = 124 (43.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 40/130 (30%), Positives = 62/130 (47%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVT---TTEEPKEETTKEAKEEEEA-PVE 178
EV ++ + E E EE E+ +V T EE KEE EA E +E VE
Sbjct: 752 EVKEEVKEEDVKEEVKEEEVKEEEVKEEEVKEVAKEETKEEIKEEVNDEATEVKEVNQVE 811
Query: 179 TN-EATEVTEEVKPEVEENPAPERTEEEELKEE-TKETRIQHQWRNRSQRRTNQLKPLRK 352
+ EV EEVK EV+E +EEE+KEE KE ++ + + + ++K ++
Sbjct: 812 EEVKEEEVKEEVKVEVKEEEVKGEAKEEEVKEEEVKEEEVKEEVKEVKEEVKEEVKQDKE 871
Query: 353 PKQNNFLFEK 382
+ N + E+
Sbjct: 872 EEVNEEIKEE 881
Score = 120 (42.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 39/110 (35%), Positives = 56/110 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E EV ++ V + E E K EE E AT+V + +EE KE + +EE VE
Sbjct: 773 EEEVKEEEVKEVAKEETKEEIK-EEVNDE--ATEVKEVNQVEEEV-KEEEVKEEVKVEVK 828
Query: 185 EATEVTEEVKPEV-EENPAPERTEEEELKEETKETR--IQHQWRNRSQRRTNQ 334
E EEVK E EE E +EEE+KEE KE + ++ + + + N+
Sbjct: 829 E-----EEVKGEAKEEEVKEEEVKEEEVKEEVKEVKEEVKEEVKQDKEEEVNE 876
Score = 114 (40.1 bits), Expect = 0.00017, P = 0.00017
Identities = 34/92 (36%), Positives = 47/92 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E EV ++ V E E K EE E+ EE KEE KE KEE + V+ +
Sbjct: 816 EEEVKEEVKVEVKEEEVKGEAKEEEVKEEE-----VKEEEVKEEV-KEVKEEVKEEVKQD 869
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETK 280
+ EV EE+K E +E E T+E++ KE+ K
Sbjct: 870 KEEEVNEEIKEETKE----EETKEDDNKEDEK 897
Score = 105 (37.0 bits), Expect = 0.0015, P = 0.0015
Identities = 31/99 (31%), Positives = 48/99 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
++E +Q E + E KI E E+ + EE KEE KE + +EE E
Sbjct: 727 DLEKLKQQQEQEQEQQQKENNKIVEEVKEE-VKEEDVKEEVKEEEVKEEEVKEEEVKEVA 785
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
+ E EE+K EV + A E E +++EE KE ++ +
Sbjct: 786 KE-ETKEEIKEEVNDE-ATEVKEVNQVEEEVKEEEVKEE 822
Score = 105 (37.0 bits), Expect = 0.0015, P = 0.0015
Identities = 38/129 (29%), Positives = 59/129 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E EV ++ V E E K EE E+ EE KEE KE KEE + V+ +
Sbjct: 816 EEEVKEEVKVEVKEEEVKGEAKEEEVKEEE-----VKEEEVKEEV-KEVKEEVKEEVKQD 869
Query: 185 EATEVTEEVKPEVEENPAPE--RTEEEELKEETKETRIQHQW----RNRSQR--RTNQLK 340
+ EV EE+K E +E E E+E++ EE + +++ S++ N
Sbjct: 870 KEEEVNEEIKEETKEEETKEDDNKEDEKVNEENETVNEENEVGIIVSPPSEKVDEANSSS 929
Query: 341 PLRKPKQNNFLFEKD 385
+ P+ + KD
Sbjct: 930 TISSPENEGSVSVKD 944
Score = 99 (34.8 bits), Expect = 0.054, P = 0.053
Identities = 22/61 (36%), Positives = 37/61 (60%), Frame = +2
Query: 119 EEPKEETTK-EAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEE-TKETRI 292
++ KE+ K + ++E+E + E ++ EEVK EV+E E +EEE+KEE KE +
Sbjct: 722 QKEKEDLEKLKQQQEQEQEQQQKENNKIVEEVKEEVKEEDVKEEVKEEEVKEEEVKEEEV 781
Query: 293 Q 295
+
Sbjct: 782 K 782
>gi|79960|pir||JH0204 hypothetical 30.5K protein precursor - Enterococcus
faecalis plasmid pAM-beta-1 >gi|3023044|gb|AAC38600.1| (AF007787)
orfC [Enterococcus faecalis]
Length = 288
Frame 2 hits (HSPs): ___________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: _______________________ __
__________________________________________________
Database sequence: | | | | | | | 288
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 16..73
DOMO DM00563: ANTILEUKOPROTEINASEREPEAT 75..132
Entrez domain: signal sequence 1..24
PROSITE GRAM_POS_ANCHORING: Gram-positive cocci 258..263
__________________
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 35/86 (40%), Positives = 40/86 (46%), Frame = +2
Query: 29 PTTVTE-NEATEVTK-IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVT 202
PT TE E TE T+ E T P +P T+ T EP E T E P E E TE T
Sbjct: 100 PTEPTEPTEPTEPTEPTEPTEPTEP-TEPTEPTEPTEPTEPTEPTEPTEPTEPTEPTEPT 158
Query: 203 EEVKPEVEENPAPERTEEEELKEETKET 286
E +P P E TE E E +K T
Sbjct: 159 EPTEPTEPTEPT-EPTEPTEPTEPSKPT 185
Score = 107 (37.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 37/86 (43%), Positives = 41/86 (47%), Frame = +2
Query: 29 PTTVTE-NEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTE 205
PT TE E TE T E T P +P T+ T EP E T E E E P E E TE TE
Sbjct: 82 PTEPTEPTEPTEPT--EPTEPTEP-TEPTEPTEPTEPT--EPTEPTE-PTEPTEPTEPTE 135
Query: 206 EVKPEVEENPAPERTEEEELKEETKET 286
+P P E TE E E T+ T
Sbjct: 136 PTEPTEPTEPT-EPTEPTEPTEPTEPT 161
Score = 100 (35.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/71 (40%), Positives = 33/71 (46%), Frame = +2
Query: 29 PTTVTE-NEATEVTK-IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVT 202
PT TE E TE T+ E T P +P T+ T EP E T E P E E TE T
Sbjct: 121 PTEPTEPTEPTEPTEPTEPTEPTEP-TEPTEPTEPTEPTEPTEPTEPTEPTEPTEPTEPT 179
Query: 203 EEVKPEVEENPA 238
E KP P+
Sbjct: 180 EPSKPTEPTEPS 191
Score = 99 (34.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 30/79 (37%), Positives = 35/79 (44%), Frame = +2
Query: 50 EATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEE 229
+ TE T E T P +P T+ T EP E T E P E E TE TE +P
Sbjct: 81 DPTEPT--EPTEPTEP-TEPTEPTEPTEPTEPTEPTEPTEPTEPTEPTEPTEPTEPTEPT 137
Query: 230 NPAPERTEEEELKEETKET 286
P E TE E E T+ T
Sbjct: 138 EPT-EPTEPTEPTEPTEPT 155
Score = 79 (27.8 bits), Expect = 0.52, Sum P(2) = 0.40
Identities = 28/93 (30%), Positives = 37/93 (39%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
V+ + T T + V ++ P P V + P + T E E E P E E
Sbjct: 41 VDPVEPTDPTTPVDPVDPVDPVDPVDPVDPVDPVDPVD-PVDPT--EPTEPTE-PTEPTE 96
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
TE TE +P P E TE E E T+ T
Sbjct: 97 PTEPTEPTEPTEPTEPT-EPTEPTEPTEPTEPT 128
Score = 78 (27.5 bits), Expect = 8.0, P = 1.0
Identities = 31/88 (35%), Positives = 44/88 (50%), Frame = +2
Query: 29 PTTVTE-NEATEVTK-IEETTPEQPATQVTTTEEPKEET--TKEAKEEEEAPVETNEATE 196
PT TE E TE T+ E T P +P T+ T EP + T T+ +K + P+E T+
Sbjct: 148 PTEPTEPTEPTEPTEPTEPTEPTEP-TEPTEPTEPSKPTEPTEPSKPVDTNPIENPVNTD 206
Query: 197 VTEEVKPEVEEN-PAPERTEEEELKEETKE 283
T V VE++ P + + K E KE
Sbjct: 207 -TGVVIVAVEDSKPIIQLADGTTKKVEAKE 235
Score = 41 (14.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 9/26 (34%), Positives = 11/26 (42%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTEQFLV 375
P E KP + P E T T +V
Sbjct: 187 PTEPSKPVDTNPIENPVNTDTGVVIV 212
>gi|418139|sp|P33191|TUB8_SOLTU INDUCED STOLEN TIP PROTEIN TUB8
>gi|421959|pir||S28046 TUB8 protein - potato (fragment)
>gi|21483|emb|CAA77741.1| (Z11679) induced stolon tip protein
[Solanum tuberosum]
Length = 211
Frame 2 hits (HSPs): ______________________________________
Frame 1 hits (HSPs): ______
Annotated Domains: _____________________ ___
__________________________________________________
Database sequence: | | | | | | 211
0 50 100 150 200
__________________
Annotated Domains:
Entrez Domain: 9 X 6-7 AA REPEATS OF E-E-P-A-A- 56..141
Entrez Repetitive region: 1 (APPROXIMATE). 56..61
Entrez Repetitive region: 2 (APPROXIMATE). 76..81
Entrez Repetitive region: 3 (APPROXIMATE). 84..88
Entrez Repetitive region: 4. 92..97
Entrez Repetitive region: 5 (APPROXIMATE). 107..112
Entrez Repetitive region: 6. 115..120
Entrez Repetitive region: 7. 121..126
Entrez Repetitive region: 8 (APPROXIMATE). 127..133
Entrez Repetitive region: 9 (APPROXIMATE). 136..140
Entrez Domain: POLY-TYR. 203..208
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 31/74 (41%), Positives = 36/74 (48%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQ----PATQVTTTEEPKEETTKEAK-EEEEAPVETNEAT 193
P E E+ V +E TTP + PA +VT EEP KE + E APVE EA
Sbjct: 22 PMASVEVESAPVAAVETTTPAEVEATPAPEVTKVEEPAPVVEKEVEVESAPAPVE-EEAA 80
Query: 194 EVTEEVKPEVEENPA 238
V EE V E PA
Sbjct: 81 PVAEEAAALVAEEPA 95
Score = 94 (33.1 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 33/87 (37%), Positives = 37/87 (42%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPV-ETNE 187
V TP V A EVTK+EE P + +V + P EE EE A V E
Sbjct: 36 VETTTPAEVEATPAPEVTKVEEPAPVVEKEVEVESAPAPVEEEAAPVAEEAAALVAEEPA 95
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEE 274
A E T V VE AP EE EE
Sbjct: 96 AAEPTAAVAAAVEPVAAP--VEEPAAAEE 122
Score = 87 (30.6 bits), Expect = 0.31, P = 0.27
Identities = 31/82 (37%), Positives = 35/82 (42%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTK-IEE-TTPEQPAT-QVTTTEEPKEETTKEAKEEEEAPVET 181
E A PT V +EE E+PA + P EE E EEAPV
Sbjct: 93 EPAAAEPTAAVAAAVEPVAAPVEEPAAAEEPAAAEEPVAAAPVEEAAAPKAEPEEAPVSE 152
Query: 182 NEATEVTEEVKPEVEENPAPERTEE 256
EA E EE P EE PE+ EE
Sbjct: 153 PEA-EKAEEASPVSEE---PEKVEE 173
Score = 83 (29.2 bits), Expect = 1.0, P = 0.64
Identities = 33/96 (34%), Positives = 38/96 (39%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTK------IEETTPEQPATQVTTTEEPKEETTKE--AKEE 160
EVEV + P V E EA V + EE +P V EP +E A EE
Sbjct: 65 EVEV-ESAPAPV-EEEAAPVAEEAAALVAEEPAAAEPTAAVAAAVEPVAAPVEEPAAAEE 122
Query: 161 EEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEE 274
A E A V E P+ E AP E E EE
Sbjct: 123 PAAAEEPVAAAPVEEAAAPKAEPEEAPVSEPEAEKAEE 160
Score = 80 (28.2 bits), Expect = 2.5, P = 0.92
Identities = 38/113 (33%), Positives = 46/113 (40%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTK------IEETTPEQPATQVTTTEEPKEETTKE-AKEEE 163
EVEV + P V E EA V + EE +P V EP +E A EE
Sbjct: 65 EVEV-ESAPAPV-EEEAAPVAEEAAALVAEEPAAAEPTAAVAAAVEPVAAPVEEPAAAEE 122
Query: 164 EAPVETNEATEVTEEV---KPEVEENPA--PERTEEEE---LKEETKETRIQHQW 304
A E A EE K E EE P PE + EE + EE ++ QW
Sbjct: 123 PAAAEEPVAAAPVEEAAAPKAEPEEAPVSEPEAEKAEEASPVSEEPEKVEEIIQW 177
Score = 74 (26.0 bits), Expect = 0.90, Sum P(2) = 0.60
Identities = 31/82 (37%), Positives = 34/82 (41%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEE 208
P E E+ V +E TTP +V T P E TK EE APV E EV
Sbjct: 22 PMASVEVESAPVAAVETTTP----AEVEATPAP--EVTKV---EEPAPVVEKEV-EVESA 71
Query: 209 VKPEVEENPAPERTEEEELKEE 274
P VEE AP E L E
Sbjct: 72 PAP-VEEEAAPVAEEAAALVAE 92
Score = 41 (14.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 9/22 (40%), Positives = 12/22 (54%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEE 351
P APV E + E+ + A V E
Sbjct: 145 PEEAPVSEPEAEKAEEASPVSE 166
>gi|3157925|gb|AAC17608.1| (AC002131) ESTs gb|F13979, gb|AA042648, gb|H77240,
gb|T76189, gb|H35952, gb|T22022 and gb|T42279 come from this gene.
A similar ORF is present on the opposite strand. [Arabidopsis
thaliana]
Length = 138
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 44/141 (31%), Positives = 70/141 (49%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAP-VETN 184
VEV Q TP V EN +EET E T+VT ++P+E +++ EAP VETN
Sbjct: 4 VEVEQVTPVAV-ENVEVPTKTVEETVVE---TEVT--QQPEESVPAVTEQKSEAPIVETN 57
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEET-KETRIQHQWRNRSQRRTNQLKPLRKPKQ 361
E V EE + + EE ++TEE++ K E ET + + +++ T + + K+
Sbjct: 58 EEV-VVEEAEKKDEETE--KKTEEKDEKTEVITETPVVEEEEKKAEEVTETPAVVEEEKK 114
Query: 362 NNFLFEKDWKLKPXGYXIIELXE 430
+ EK ++ +E E
Sbjct: 115 TEVVEEKQTEVAAAEEVAVEKAE 137
Score = 93 (32.7 bits), Expect = 0.0054, P = 0.0054
Identities = 30/89 (33%), Positives = 41/89 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPK-EETTKEAKEEEEAP--V 175
E + + V E + + E+ T E+ TE P EE K+A+E E P V
Sbjct: 50 EAPIVETNEEVVVEEAEKKDEETEKKTEEKDEKTEVITETPVVEEEEKKAEEVTETPAVV 109
Query: 176 ETNEATEVTEEVKPEVE--ENPAPERTEE 256
E + TEV EE + EV E A E+ EE
Sbjct: 110 EEEKKTEVVEEKQTEVAAAEEVAVEKAEE 138
>gi|12742768 ref|XP_009907.2| neurofilament, heavy polypeptide (200kD) [Homo
sapiens]
Length = 1020
Frame 2 hits (HSPs): _________ _____________
Frame 1 hits (HSPs): ____ ___
__________________________________________________
Database sequence: | | | | | | | | 1020
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 34/91 (37%), Positives = 44/91 (48%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
++V + V E E +EE T E T+ T EE KE +E KEEE E E
Sbjct: 436 IKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAE 495
Query: 188 ATEVTEEVK-PEVEENPAPERTEEEELKEETK 280
E EE K P EE +PE+ + +KEE K
Sbjct: 496 GGE--EETKSPPAEEAASPEKEAKSPVKEEAK 525
Score = 103 (36.3 bits), Expect = 0.0071, P = 0.0070
Identities = 35/128 (27%), Positives = 54/128 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEAT--EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEE---- 166
E E A TP T + ++ E K E P+ + E+PKE + KEE E
Sbjct: 843 EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKK 902
Query: 167 APVETNEA---TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQL 337
P EA EV E+ KP+ + A + ++ + KE +K + + + +
Sbjct: 903 VPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKA 962
Query: 338 K-PLRKPK 358
K P KPK
Sbjct: 963 KKPEEKPK 970
Score = 93 (32.7 bits), Expect = 0.44, P = 0.35
Identities = 30/117 (25%), Positives = 55/117 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPA-TQVTTTEEPKEETTKEAKEEEEAPVETN 184
VE +++ + EA + K+ E PA +V +PKE+T KE ++A +
Sbjct: 882 VEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAK-- 939
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E KP ++ APE+ + +E K + E + + + + + +T +P KPK
Sbjct: 940 ------EPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEP-SKPK 990
Score = 89 (31.3 bits), Expect = 1.6, P = 0.80
Identities = 24/94 (25%), Positives = 46/94 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
+ EVA++ P E ++ + +E PE+ T+ ++P+E+ EAK +E+
Sbjct: 925 KTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKED------ 978
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+ T E KP+ E+ T++++ K K T
Sbjct: 979 DKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKAT 1012
Score = 88 (31.0 bits), Expect = 2.2, P = 0.88
Identities = 32/131 (24%), Positives = 60/131 (45%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE-EEEAPVETNEATEV 199
+ T E + K E +V + E+ K ++AK E+E P + + V
Sbjct: 765 EAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPV 824
Query: 200 TEEVKP-EVEENPAPERTEEEELK-----EETKETRIQHQWRNRSQR-RTNQLK-P-LRK 352
EE KP EV+ P++ EEE+ EE K+++ + + + + + + K P + K
Sbjct: 825 KEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEK 884
Query: 353 PKQNNFLFEKD 385
PK++ +K+
Sbjct: 885 PKESKVEAKKE 895
Score = 86 (30.3 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 30/96 (31%), Positives = 39/96 (40%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE-EPKEETTKEAKEEEEAPVET 181
E E ++ E E EE T PA + + E E K +EAK EA
Sbjct: 475 EKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE 534
Query: 182 NEATEVTEEVK-PEVEENPAPERTEEE-ELKEETKE 283
E + EVK PE ++PA E + E K KE
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKE 570
Score = 85 (29.9 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 23/70 (32%), Positives = 36/70 (51%), Frame = +2
Query: 71 IEETTPEQPA--TQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPE 244
+ E P+ P+ T + E K + +++++E E E T+VTEEV E E+ E
Sbjct: 422 LPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEE 481
Query: 245 RTEEEELKEE 274
+EEE EE
Sbjct: 482 EGKEEEGGEE 491
Score = 82 (28.9 bits), Expect = 8.8, Sum P(2) = 1.0
Identities = 31/91 (34%), Positives = 39/91 (42%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPK--EETTKEAKEEEEAPVET 181
V V +QT T E TE + E E + EE + EE TK EE A E
Sbjct: 455 VIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEK 514
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETK 280
+ V EE K E +PE+ EE + E K
Sbjct: 515 EAKSPVKEEAKSPAEAK-SPEK-EEAKSPAEVK 545
Score = 82 (28.9 bits), Expect = 8.8, Sum P(2) = 1.0
Identities = 32/94 (34%), Positives = 43/94 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVT-KIEETTPEQPAT--QVTTTEEPKEETTKEAKEEEEAPV 175
E +V ++ T E EA E K EE E+ A + T P EE KE + +PV
Sbjct: 463 ETQVTEEV-TEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAK-SPV 520
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEE-EELKEETKE 283
+ EA E PE EE +P + E+ K KE
Sbjct: 521 K-EEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKE 556
Score = 75 (26.4 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 24/89 (26%), Positives = 35/89 (39%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE--EPKEETTKEAKEEEEAPVE 178
E E ++ E E E +PE+ A E P E + E KEE ++P E
Sbjct: 485 EEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE-KEEAKSPAE 543
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELK 268
+ K E + P + E+EE K
Sbjct: 544 VKSPEKAKSPAKEEAKSPPEAKSPEKEEAK 573
Score = 49 (17.2 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 13/46 (28%), Positives = 22/46 (47%), Frame = +1
Query: 232 PST*ENRRRRIERGN*RN-PNPAPVEEQKPEENKPAETVEETQTEQ 366
P T E + + E + P P E+++P KP E+ E + E+
Sbjct: 851 PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEE 896
Score = 38 (13.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 13/36 (36%), Positives = 22/36 (61%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQT-EQFLV*ERLEA*AP 402
+P E + PE+ K + T EE ++ E+ E+ EA +P
Sbjct: 628 SPAEVKSPEKAK-SPTKEEAKSPEKAKSPEKEEAKSP 663
Score = 36 (12.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/38 (28%), Positives = 17/38 (44%), Frame = +1
Query: 289 NPAPVEEQKPEENKPAETVEETQTEQFLV*ERLEA*AP 402
+P E + PE+ K E E E+ + EA +P
Sbjct: 640 SPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSP 677
>gi|128126|sp|P12036|NFH_HUMAN NEUROFILAMENT TRIPLET H PROTEIN (200 KDA
NEUROFILAMENT PROTEIN) (NEUROFILAMENT HEAVY POLYPEPTIDE) (NF-H)
>gi|71549|pir||QFHUH neurofilament triplet H protein - human
>gi|1841430|emb|CAA33366.1| (X15306) heavy neurofilament subunit
[Homo sapiens]
Length = 1020
Frame 2 hits (HSPs): _________ _____________
Frame 1 hits (HSPs): ____ ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 1020
0 150 300 450 600 750 900
__________________
Annotated Domains:
DOMO DM00061: INTERMEDIATEFILAMENTS 66..432
DOMO DM04498: 434..1019
Entrez Domain: HEAD. 1..100
Entrez Domain: ROD. 101..413
Entrez Domain: TAIL. 414..1020
Entrez Domain: COIL 1A. 101..132
Entrez Domain: LINKER 1. 133..145
Entrez Domain: COIL 1B. 146..244
Entrez Domain: LINKER 12. 245..266
Entrez Domain: COIL 2A. 267..288
Entrez Domain: LINKER 2. 289..292
Entrez Domain: COIL 2B. 293..413
PFAM filament: Intermediate filament proteins 96..412
PRODOM PD020183: NFH(2) O35482(1) 2..44
PRODOM PD002961: NFL(7) NFM(4) AINX(3) 46..112
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 114..349
PRODOM PD005641: NFM(4) AINX(2) NFH(2) 351..387
PRODOM PD000194: DESM(8) VIME(8) NFL(7) 389..420
PRODOM PD151880: NFH(2) O35482(1) 422..456
PRODOM PD000540: H1(18) O76786(11) TONB(10) 514..712
PRODOM PD019053: NFH(4) O35482(1) P71492(1) 714..757
PRODOM PD019053: NFH(4) O35482(1) P71492(1) 769..824
PRODOM PD000540: H1(18) O76786(11) TONB(10) 835..1019
PROSITE IF: Intermediate filaments signature. 399..407
__________________
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 34/91 (37%), Positives = 44/91 (48%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
++V + V E E +EE T E T+ T EE KE +E KEEE E E
Sbjct: 436 IKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAE 495
Query: 188 ATEVTEEVK-PEVEENPAPERTEEEELKEETK 280
E EE K P EE +PE+ + +KEE K
Sbjct: 496 GGE--EETKSPPAEEAASPEKEAKSPVKEEAK 525
Score = 103 (36.3 bits), Expect = 0.0071, P = 0.0070
Identities = 35/128 (27%), Positives = 54/128 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEAT--EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEE---- 166
E E A TP T + ++ E K E P+ + E+PKE + KEE E
Sbjct: 843 EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKK 902
Query: 167 APVETNEA---TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQL 337
P EA EV E+ KP+ + A + ++ + KE +K + + + +
Sbjct: 903 VPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKA 962
Query: 338 K-PLRKPK 358
K P KPK
Sbjct: 963 KKPEEKPK 970
Score = 93 (32.7 bits), Expect = 0.44, P = 0.35
Identities = 30/117 (25%), Positives = 55/117 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPA-TQVTTTEEPKEETTKEAKEEEEAPVETN 184
VE +++ + EA + K+ E PA +V +PKE+T KE ++A +
Sbjct: 882 VEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAK-- 939
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E KP ++ APE+ + +E K + E + + + + + +T +P KPK
Sbjct: 940 ------EPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEP-SKPK 990
Score = 89 (31.3 bits), Expect = 1.6, P = 0.80
Identities = 24/94 (25%), Positives = 46/94 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
+ EVA++ P E ++ + +E PE+ T+ ++P+E+ EAK +E+
Sbjct: 925 KTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKED------ 978
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+ T E KP+ E+ T++++ K K T
Sbjct: 979 DKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKAT 1012
Score = 86 (30.3 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 30/96 (31%), Positives = 39/96 (40%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE-EPKEETTKEAKEEEEAPVET 181
E E ++ E E EE T PA + + E E K +EAK EA
Sbjct: 475 EKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE 534
Query: 182 NEATEVTEEVK-PEVEENPAPERTEEE-ELKEETKE 283
E + EVK PE ++PA E + E K KE
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKE 570
Score = 86 (30.3 bits), Expect = 4.0, P = 0.98
Identities = 32/131 (24%), Positives = 59/131 (45%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE-EEEAPVETNEATEV 199
+ T E + K E +V + E+ K +AK E+E P + + V
Sbjct: 765 EAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKADAKAPEKEIPKKEEVKSPV 824
Query: 200 TEEVKP-EVEENPAPERTEEEELK-----EETKETRIQHQWRNRSQR-RTNQLK-P-LRK 352
EE KP EV+ P++ EEE+ EE K+++ + + + + + + K P + K
Sbjct: 825 KEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEK 884
Query: 353 PKQNNFLFEKD 385
PK++ +K+
Sbjct: 885 PKESKVEAKKE 895
Score = 85 (29.9 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 23/70 (32%), Positives = 36/70 (51%), Frame = +2
Query: 71 IEETTPEQPA--TQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPE 244
+ E P+ P+ T + E K + +++++E E E T+VTEEV E E+ E
Sbjct: 422 LPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEE 481
Query: 245 RTEEEELKEE 274
+EEE EE
Sbjct: 482 EGKEEEGGEE 491
Score = 82 (28.9 bits), Expect = 8.8, Sum P(2) = 1.0
Identities = 31/91 (34%), Positives = 39/91 (42%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPK--EETTKEAKEEEEAPVET 181
V V +QT T E TE + E E + EE + EE TK EE A E
Sbjct: 455 VIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEK 514
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETK 280
+ V EE K E +PE+ EE + E K
Sbjct: 515 EAKSPVKEEAKSPAEAK-SPEK-EEAKSPAEVK 545
Score = 82 (28.9 bits), Expect = 8.8, Sum P(2) = 1.0
Identities = 32/94 (34%), Positives = 43/94 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVT-KIEETTPEQPAT--QVTTTEEPKEETTKEAKEEEEAPV 175
E +V ++ T E EA E K EE E+ A + T P EE KE + +PV
Sbjct: 463 ETQVTEEV-TEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAK-SPV 520
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEE-EELKEETKE 283
+ EA E PE EE +P + E+ K KE
Sbjct: 521 K-EEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKE 556
Score = 75 (26.4 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 24/89 (26%), Positives = 35/89 (39%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE--EPKEETTKEAKEEEEAPVE 178
E E ++ E E E +PE+ A E P E + E KEE ++P E
Sbjct: 485 EEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE-KEEAKSPAE 543
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELK 268
+ K E + P + E+EE K
Sbjct: 544 VKSPEKAKSPAKEEAKSPPEAKSPEKEEAK 573
Score = 49 (17.2 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 13/46 (28%), Positives = 22/46 (47%), Frame = +1
Query: 232 PST*ENRRRRIERGN*RN-PNPAPVEEQKPEENKPAETVEETQTEQ 366
P T E + + E + P P E+++P KP E+ E + E+
Sbjct: 851 PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEE 896
Score = 38 (13.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 13/36 (36%), Positives = 22/36 (61%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQT-EQFLV*ERLEA*AP 402
+P E + PE+ K + T EE ++ E+ E+ EA +P
Sbjct: 628 SPAEVKSPEKAK-SPTKEEAKSPEKAKSPEKEEAKSP 663
Score = 36 (12.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/38 (28%), Positives = 17/38 (44%), Frame = +1
Query: 289 NPAPVEEQKPEENKPAETVEETQTEQFLV*ERLEA*AP 402
+P E + PE+ K E E E+ + EA +P
Sbjct: 640 SPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSP 677
>gi|4240179|dbj|BAA74868.1| (AB020652) KIAA0845 protein [Homo sapiens]
Length = 933
Frame 2 hits (HSPs): _________ ______________
Frame 1 hits (HSPs): __ ____
__________________________________________________
Database sequence: | | | | | | | | 933
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 34/91 (37%), Positives = 44/91 (48%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
++V + V E E +EE T E T+ T EE KE +E KEEE E E
Sbjct: 343 IKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAE 402
Query: 188 ATEVTEEVK-PEVEENPAPERTEEEELKEETK 280
E EE K P EE +PE+ + +KEE K
Sbjct: 403 GGE--EETKSPPAEEAASPEKEAKSPVKEEAK 432
Score = 103 (36.3 bits), Expect = 0.0064, P = 0.0063
Identities = 35/128 (27%), Positives = 54/128 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEAT--EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEE---- 166
E E A TP T + ++ E K E P+ + E+PKE + KEE E
Sbjct: 756 EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKK 815
Query: 167 APVETNEA---TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQL 337
P EA EV E+ KP+ + A + ++ + KE +K + + + +
Sbjct: 816 VPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKA 875
Query: 338 K-PLRKPK 358
K P KPK
Sbjct: 876 KKPEEKPK 883
Score = 93 (32.7 bits), Expect = 0.40, P = 0.33
Identities = 30/117 (25%), Positives = 55/117 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPA-TQVTTTEEPKEETTKEAKEEEEAPVETN 184
VE +++ + EA + K+ E PA +V +PKE+T KE ++A +
Sbjct: 795 VEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAK-- 852
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E KP ++ APE+ + +E K + E + + + + + +T +P KPK
Sbjct: 853 ------EPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEP-SKPK 903
Score = 89 (31.3 bits), Expect = 1.5, P = 0.77
Identities = 24/94 (25%), Positives = 46/94 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
+ EVA++ P E ++ + +E PE+ T+ ++P+E+ EAK +E+
Sbjct: 838 KTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKED------ 891
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+ T E KP+ E+ T++++ K K T
Sbjct: 892 DKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKAT 925
Score = 88 (31.0 bits), Expect = 1.9, P = 0.86
Identities = 32/131 (24%), Positives = 60/131 (45%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE-EEEAPVETNEATEV 199
+ T E + K E +V + E+ K ++AK E+E P + + V
Sbjct: 678 EAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPV 737
Query: 200 TEEVKP-EVEENPAPERTEEEELK-----EETKETRIQHQWRNRSQR-RTNQLK-P-LRK 352
EE KP EV+ P++ EEE+ EE K+++ + + + + + + K P + K
Sbjct: 738 KEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEK 797
Query: 353 PKQNNFLFEKD 385
PK++ +K+
Sbjct: 798 PKESKVEAKKE 808
Score = 86 (30.3 bits), Expect = 3.1, Sum P(2) = 0.95
Identities = 30/96 (31%), Positives = 39/96 (40%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE-EPKEETTKEAKEEEEAPVET 181
E E ++ E E EE T PA + + E E K +EAK EA
Sbjct: 382 EKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE 441
Query: 182 NEATEVTEEVK-PEVEENPAPERTEEE-ELKEETKE 283
E + EVK PE ++PA E + E K KE
Sbjct: 442 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKE 477
Score = 85 (29.9 bits), Expect = 4.5, Sum P(2) = 0.99
Identities = 23/70 (32%), Positives = 36/70 (51%), Frame = +2
Query: 71 IEETTPEQPA--TQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPE 244
+ E P+ P+ T + E K + +++++E E E T+VTEEV E E+ E
Sbjct: 329 LPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEE 388
Query: 245 RTEEEELKEE 274
+EEE EE
Sbjct: 389 EGKEEEGGEE 398
Score = 75 (26.4 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 24/89 (26%), Positives = 35/89 (39%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE--EPKEETTKEAKEEEEAPVE 178
E E ++ E E E +PE+ A E P E + E KEE ++P E
Sbjct: 392 EEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE-KEEAKSPAE 450
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELK 268
+ K E + P + E+EE K
Sbjct: 451 VKSPEKAKSPAKEEAKSPPEAKSPEKEEAK 480
Score = 49 (17.2 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 13/46 (28%), Positives = 22/46 (47%), Frame = +1
Query: 232 PST*ENRRRRIERGN*RN-PNPAPVEEQKPEENKPAETVEETQTEQ 366
P T E + + E + P P E+++P KP E+ E + E+
Sbjct: 764 PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEE 809
Score = 36 (12.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 7/26 (26%), Positives = 13/26 (50%), Frame = +1
Query: 289 NPAPVEEQKPEENKPAETVEETQTEQ 366
+P E + PE+ K E + + E+
Sbjct: 547 SPTKEEAKSPEKAKSPEKAKSPEKEE 572
>gi|7493381|pir||T39903 serine-rich protein - fission yeast
(Schizosaccharomyces pombe) >gi|3873550|emb|CAA22127.1| (AL033534)
hypothetical serine-rich secreted protein [Schizosaccharomyces
pombe]
Length = 534
Frame -2 hits (HSPs): ___________________________
Frame -3 hits (HSPs): ____ _________
__________________________________________________
Database sequence: | | | | | 534
0 150 300 450
Minus Strand HSPs:
Score = 117 (41.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/80 (43%), Positives = 48/80 (60%), Frame = -2
Query: 273 SSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASS---SSFASLVVSSFGSSVVVTW 103
SS +S SS LS + SS+S F+SS TS +S +S+ +SS SSF+S SS SS +
Sbjct: 312 SSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSST 371
Query: 102 VAGCSGVVSSILVTSVASFS 43
V+ S SS L +S +S S
Sbjct: 372 VSSSSSTSSSTLTSSSSSSS 391
Score = 101 (35.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 37/93 (39%), Positives = 55/93 (59%), Frame = -2
Query: 282 SLVSSFNSSSSVLSGAGF---SSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVV 112
S SS+ SSSSV+S + SS+S TSS S +S+ ST +SSSS +S + SS SS
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTA 263
Query: 111 VTWVAGCSGVVSSILVTSVASFSVTVVGVCCATSTS 4
+ + S ++SS +S +S S T ++S+S
Sbjct: 264 SS-SSSSSSIISS---SSSSSSSPTSTSSTISSSSS 295
Score = 94 (33.1 bits), Expect = 0.011, Sum P(2) = 0.011
Identities = 33/93 (35%), Positives = 52/93 (55%), Frame = -2
Query: 282 SLVSSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVVVTW 103
S SS +S+SS LS + SST+ +SS +S+ S S+ +SS + S +SS SS +
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSS--SS 299
Query: 102 VAGCSGVVSSILVTSVASFSVTVVGVCCATSTS 4
S +SS +S +SFS T+ ++S+S
Sbjct: 300 PTSTSSTISSSSSSS-SSFSSTLSSSSMSSSSS 331
Score = 92 (32.4 bits), Expect = 0.014, Sum P(2) = 0.014
Identities = 34/88 (38%), Positives = 51/88 (57%), Frame = -2
Query: 282 SLVSSFNSSSS--VLSGAGFSSTSGFTSSVTSVASLVSTGASSSS-FASLVVSSF---GS 121
S++SS +SSSS + + SS+S +SS TS +S +S+ +SSSS F+S + SS S
Sbjct: 271 SIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS 330
Query: 120 SVVVTWVAGCSGVVSSILVTSVASFSVT 37
S + + S + SS S +SFS T
Sbjct: 331 SFSSSPTSSSSTISSSSSSPSSSSFSST 358
Score = 91 (32.0 bits), Expect = 0.036, Sum P(2) = 0.035
Identities = 31/90 (34%), Positives = 49/90 (54%), Frame = -2
Query: 273 SSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVVVTWVAG 94
SS +SSS S + SS+S +SS TS +S +S+ +SSSS + S+ SS + +
Sbjct: 259 SSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS--SS 316
Query: 93 CSGVVSSILVTSVASFSVTVVGVCCATSTS 4
S +SS ++S +SFS + S+S
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSSSSTISSS 346
Score = 91 (32.0 bits), Expect = 0.39, P = 0.32
Identities = 37/97 (38%), Positives = 50/97 (51%), Frame = -2
Query: 291 IRVSLVSSFNSSSSVLSGAGFSSTSGFTSSVT-SVASLVSTGASSSSFASLVVSSFGSSV 115
+ VS+ SS SSS L+ + FSS S TSS SV+S S+ SS++ S S SS
Sbjct: 155 VEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSS 214
Query: 114 VVTWVAGCSGVVSSILVTSVASFSVTVVGVCCATSTS 4
VV+ + S SS L +S S S ++STS
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTS 251
Score = 87 (30.6 bits), Expect = 0.092, Sum P(2) = 0.088
Identities = 32/90 (35%), Positives = 48/90 (53%), Frame = -2
Query: 273 SSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVVVTWVAG 94
S+ +SSSS S + FSST+ + S +S +S VS+ +S+SS ++L SS SS + +
Sbjct: 341 STISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSS-STLTSSSSSSSRPASSSSH 399
Query: 93 CSGVVSSILVTSVASFSVTVVGVCCATSTS 4
S + S +S S S V STS
Sbjct: 400 SSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429
Score = 87 (30.6 bits), Expect = 1.4, P = 0.75
Identities = 38/95 (40%), Positives = 52/95 (54%), Frame = -2
Query: 291 IRVSLVSSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVV 112
+ VS+ SS SSS L+ + FSS S TSS S S+ ST SSS+F+S +S SS +
Sbjct: 155 VEVSISSSSLSSSDPLTSSTFSSLSSSTSS--SQPSVSST--SSSTFSSAAPTSTSSSYL 210
Query: 111 VTWVAGCSGVVSSILVTSVASFSVTVVGVCCATST 7
+ S VVSS S +S S T+ +TS+
Sbjct: 211 SS-----SSVVSSSSSPSSSSSS-TLTSSSLSTSS 239
Score = 85 (29.9 bits), Expect = 0.29, Sum P(2) = 0.25
Identities = 36/93 (38%), Positives = 51/93 (54%), Frame = -2
Query: 282 SLVSSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVVVTW 103
+L SS S+SS+ S SS+S TSS S +S ST +SSSS +S++ SS SS T
Sbjct: 229 TLTSSSLSTSSIPST---SSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT- 284
Query: 102 VAGCSGVVSSILVTSVASFSVTVVGVCCATSTS 4
S +SS +S +S S T ++S+S
Sbjct: 285 --STSSTISS---SSSSSSSPTSTSSTISSSSS 312
Score = 79 (27.8 bits), Expect = 1.3, Sum P(2) = 0.71
Identities = 25/52 (48%), Positives = 33/52 (63%), Frame = -2
Query: 273 SSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSS 118
S+ +SSSS S + FSST TSS S +S ST +SSSS +S ++S SS
Sbjct: 341 STISSSSSSPSSSSFSST---TSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389
Score = 79 (27.8 bits), Expect = 1.3, Sum P(2) = 0.71
Identities = 23/55 (41%), Positives = 33/55 (60%), Frame = -2
Query: 282 SLVSSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSS 118
S+ SS + SSS S + S+S + S +S +S S+ SSSSF+S V SS +S
Sbjct: 325 SMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTS 379
Score = 78 (27.5 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 36/107 (33%), Positives = 54/107 (50%), Frame = -2
Query: 282 SLVSSFNSSSSVLSGAGF---SSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVV 112
S SS+ SSSSV+S + SS+S TSS S +S+ ST +SSSS +S + SS SS
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTA 263
Query: 111 VTWVAGCSGVVSSI------------LVTSVASFSVTVVGVCCATSTS 4
+ + S ++SS ++S +S S + S+S
Sbjct: 264 SS-SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSS 310
Score = 77 (27.1 bits), Expect = 2.4, Sum P(2) = 0.90
Identities = 36/104 (34%), Positives = 53/104 (50%), Frame = -2
Query: 273 SSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSS-FASLVVSSF---GSSVVVT 106
SS +SSS + + SS+S +SS TS +S +S+ +SSSS F+S + SS SS +
Sbjct: 276 SSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSS 335
Query: 105 WVAGCSGVVSSILVTSVASFSVTVVG----------VCCATSTS 4
+ S + SS S +SFS T V ++STS
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTS 379
Score = 76 (26.8 bits), Expect = 3.1, Sum P(2) = 0.96
Identities = 32/90 (35%), Positives = 50/90 (55%), Frame = -2
Query: 273 SSFNSSSSVLSGAGFSSTSGFTSSVTSVASLVSTGASSSSFASLVVSSFGSSVVVTWVAG 94
SS +SSS + + SS+S +SS +S S S+ +SSSSF+S SS S++ + +
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSS-SSMSSSSSFSSSPTSS-SSTISSSSSSP 350
Query: 93 CSGVVSSILVTSVASFSVTVVGVCCATSTS 4
S SS +S +S S + V ++STS
Sbjct: 351 SSSSFSSTTSSSKSSSSFSST-VSSSSSTS 379
Score = 44 (15.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/31 (38%), Positives = 19/31 (61%), Frame = -3
Query: 392 ASSLSQTRNCSVWVSSTVSAGLFSSGFCSST 300
+SSLS + + S SS+ S+ + SS SS+
Sbjct: 251 SSSLSSSSSSSTASSSSSSSSIISSSSSSSS 281
Score = 43 (15.1 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 14/36 (38%), Positives = 19/36 (52%), Frame = -3
Query: 407 IXGA*ASSLSQTRNCSVWVSSTVSAGLFSSGFCSST 300
I + +SS S T S SS+ S+ FSS SS+
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
Score = 42 (14.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 12/34 (35%), Positives = 19/34 (55%), Frame = -3
Query: 389 SSLSQTRNCSVWVSSTVSAGLFSSGFCSSTGAGF 288
SSLS + + S S+ S+ FSS +ST + +
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSY 209
Score = 37 (13.0 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 11/32 (34%), Positives = 17/32 (53%), Frame = -3
Query: 389 SSLSQTRNCSVWVSSTVSAGLFSSGFCSSTGA 294
SS S + + SST+S+ SS +ST +
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTSTSS 305
Score = 37 (13.0 bits), Expect = 0.47, Sum P(2) = 0.37
Identities = 12/32 (37%), Positives = 19/32 (59%), Frame = -3
Query: 392 ASSLSQTRNCSVWVSSTVSAGLFSSG--FCSS 303
+S++S + + S SST+S+ SS F SS
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFSSS 335
>gi|10835089 ref|NP_066554.1| neurofilament, heavy polypeptide (200kD);
Neurofilament, heavy polypeptide [Homo sapiens]
>gi|6470331|gb|AAF13722.1|AF203032_1 (AF203032) neurofilament
protein [Homo sapiens]
Length = 1026
Frame 2 hits (HSPs): ________ _____________
Frame 1 hits (HSPs): __ ___
__________________________________________________
Database sequence: | | | | | | | | 1026
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 34/91 (37%), Positives = 44/91 (48%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
++V + V E E +EE T E T+ T EE KE +E KEEE E E
Sbjct: 436 IKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAE 495
Query: 188 ATEVTEEVK-PEVEENPAPERTEEEELKEETK 280
E EE K P EE +PE+ + +KEE K
Sbjct: 496 GGE--EETKSPPAEEAASPEKEAKSPVKEEAK 525
Score = 103 (36.3 bits), Expect = 0.0071, P = 0.0071
Identities = 35/128 (27%), Positives = 54/128 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEAT--EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEE---- 166
E E A TP T + ++ E K E P+ + E+PKE + KEE E
Sbjct: 849 EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKK 908
Query: 167 APVETNEA---TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQL 337
P EA EV E+ KP+ + A + ++ + KE +K + + + +
Sbjct: 909 VPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKA 968
Query: 338 K-PLRKPK 358
K P KPK
Sbjct: 969 KKPEEKPK 976
Score = 93 (32.7 bits), Expect = 0.44, P = 0.36
Identities = 30/117 (25%), Positives = 55/117 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPA-TQVTTTEEPKEETTKEAKEEEEAPVETN 184
VE +++ + EA + K+ E PA +V +PKE+T KE ++A +
Sbjct: 888 VEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAK-- 945
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E KP ++ APE+ + +E K + E + + + + + +T +P KPK
Sbjct: 946 ------EPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEP-SKPK 996
Score = 89 (31.3 bits), Expect = 1.6, P = 0.80
Identities = 24/94 (25%), Positives = 46/94 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
+ EVA++ P E ++ + +E PE+ T+ ++P+E+ EAK +E+
Sbjct: 931 KTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKED------ 984
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+ T E KP+ E+ T++++ K K T
Sbjct: 985 DKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKAT 1018
Score = 88 (31.0 bits), Expect = 2.2, P = 0.89
Identities = 32/131 (24%), Positives = 60/131 (45%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE-EEEAPVETNEATEV 199
+ T E + K E +V + E+ K ++AK E+E P + + V
Sbjct: 771 EAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPV 830
Query: 200 TEEVKP-EVEENPAPERTEEEELK-----EETKETRIQHQWRNRSQR-RTNQLK-P-LRK 352
EE KP EV+ P++ EEE+ EE K+++ + + + + + + K P + K
Sbjct: 831 KEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEK 890
Query: 353 PKQNNFLFEKD 385
PK++ +K+
Sbjct: 891 PKESKVEAKKE 901
Score = 86 (30.3 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 30/96 (31%), Positives = 39/96 (40%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE-EPKEETTKEAKEEEEAPVET 181
E E ++ E E EE T PA + + E E K +EAK EA
Sbjct: 475 EKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE 534
Query: 182 NEATEVTEEVK-PEVEENPAPERTEEE-ELKEETKE 283
E + EVK PE ++PA E + E K KE
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKE 570
Score = 85 (29.9 bits), Expect = 5.5, Sum P(2) = 1.0
Identities = 23/70 (32%), Positives = 36/70 (51%), Frame = +2
Query: 71 IEETTPEQPA--TQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPE 244
+ E P+ P+ T + E K + +++++E E E T+VTEEV E E+ E
Sbjct: 422 LPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEE 481
Query: 245 RTEEEELKEE 274
+EEE EE
Sbjct: 482 EGKEEEGGEE 491
Score = 75 (26.4 bits), Expect = 5.8, Sum P(2) = 1.0
Identities = 24/89 (26%), Positives = 35/89 (39%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTE--EPKEETTKEAKEEEEAPVE 178
E E ++ E E E +PE+ A E P E + E KEE ++P E
Sbjct: 485 EEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPE-KEEAKSPAE 543
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELK 268
+ K E + P + E+EE K
Sbjct: 544 VKSPEKAKSPAKEEAKSPPEAKSPEKEEAK 573
Score = 49 (17.2 bits), Expect = 5.8, Sum P(2) = 1.0
Identities = 13/46 (28%), Positives = 22/46 (47%), Frame = +1
Query: 232 PST*ENRRRRIERGN*RN-PNPAPVEEQKPEENKPAETVEETQTEQ 366
P T E + + E + P P E+++P KP E+ E + E+
Sbjct: 857 PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEE 902
Score = 36 (12.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 7/26 (26%), Positives = 13/26 (50%), Frame = +1
Query: 289 NPAPVEEQKPEENKPAETVEETQTEQ 366
+P E + PE+ K E + + E+
Sbjct: 640 SPTKEEAKSPEKAKSPEKAKSPEKEE 665
>gi|501027|gb|AAA62273.1| (U01849) ORF2 [Trypanosoma brucei]
Length = 141
Frame -1 hits (HSPs): ___________________________________________
Frame -2 hits (HSPs): _____ _________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Minus Strand HSPs:
Score = 98 (34.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/80 (35%), Positives = 41/80 (51%), Frame = -1
Query: 259 FFFCSLRCWVLFYLRLHF-LCH-FCCLISLNWGFFFLFCFFGGFFLWFFGGSNLGSWLFW 86
+FFC + +LF +F LC +CC + FF +FC +FL +F L +LFW
Sbjct: 65 YFFCDVI--ILFIFFFYFVLCFLYCCFYLVCLVFFCIFCCVLCYFLIYF----LCCFLFW 118
Query: 85 GSFLNLGYLGCFIFCHSCWCLL 20
FL L + ++ C W LL
Sbjct: 119 VVFLFLFFFFVYV-CFYLWLLL 139
Score = 88 (31.0 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 24/52 (46%), Positives = 31/52 (59%), Frame = -1
Query: 274 FLFQFFF-FCSLRCWVLFYLR-LHFLCHFCCLISLNWGFFFLFCF-FGGFFLWFF 119
F+F F+F C L C FYL L F C FCC++ + +FL CF F FL+ F
Sbjct: 74 FIFFFYFVLCFLYC--CFYLVCLVFFCIFCCVLCY-FLIYFLCCFLFWVVFLFLF 125
Score = 82 (28.9 bits), Expect = 0.0012, Sum P(2) = 0.0012
Identities = 19/50 (38%), Positives = 27/50 (54%), Frame = -1
Query: 274 FLFQFFFFCSLRCWVLFYLRLHFLCHFCCLISLNWGFFFLFCFFGGFFLW 125
+L FFC + C VL Y ++FLC C L + + F F F + F+LW
Sbjct: 90 YLVCLVFFC-IFCCVLCYFLIYFLC--CFLFWVVFLFLFFFFVYVCFYLW 136
Score = 75 (26.4 bits), Expect = 4.1, P = 0.98
Identities = 31/90 (34%), Positives = 40/90 (44%), Frame = -1
Query: 286 GFFSFLFQFFFFCSLRCWVLFYLRLHFLCHFCC--LISLNWGF---FFLFCFFGGFFLWF 122
G F F F FC L WV F + +C F ++ W F + FC F++F
Sbjct: 19 GIFYCCF-VFCFCCLFVWVCFICFVIVVCFFLLFWVVIFYWCFDCIVYFFCDVIILFIFF 77
Query: 121 FGGSNLGSWLFWGSFLNLG-YLGCFIF-CHSCWCLLC 17
F F FL YL C +F C C C+LC
Sbjct: 78 F--------YFVLCFLYCCFYLVCLVFFCIFC-CVLC 105
Score = 48 (16.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 5/14 (35%), Positives = 11/14 (78%), Frame = -2
Query: 333 WFVLLWLLFLHWCW 292
+F+L W++ +WC+
Sbjct: 47 FFLLFWVVIFYWCF 60
Score = 37 (13.0 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 9/22 (40%), Positives = 12/22 (54%), Frame = -2
Query: 339 FSWFVLLWLLFLHWCWIRVSLV 274
F +F L FL+ C+ V LV
Sbjct: 74 FIFFFYFVLCFLYCCFYLVCLV 95
>gi|7489882|pir||T18283 hypothetical protein G5 - slime mold (Dictyostelium
discoideum) >gi|2702258|gb|AAC18634.1| (U00796) G5 ORF
[Dictyostelium discoideum]
Length = 325
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | | | 325
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/138 (30%), Positives = 67/138 (48%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
+ + P E E E + EE E+ + T +EE +EET ++EE+E E E T
Sbjct: 154 IINKLPEEEEEEEEEEEEEEEEEEQEEEVEKPTISEEEEEETPAVSEEEKEEEEEEEEET 213
Query: 194 E-VTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQ------RRTNQLKPLRK 352
V+EE K E E+ E+ +E++++E+T+ + + + N Q +TN KP K
Sbjct: 214 PAVSEEEKEEEEQEEDKEKDKEKKIEEDTETGKKKDEVMNERQDGIEISEKTND-KPTEK 272
Query: 353 PK-QNNFLFEKDWKLKPXG 406
K + N KD L G
Sbjct: 273 TKVKKNVSRVKDINLHKKG 291
Score = 107 (37.7 bits), Expect = 0.00018, P = 0.00018
Identities = 34/116 (29%), Positives = 56/116 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E+E+ ++ T E T TK ++ EE +EE +E +EEEE E
Sbjct: 126 EIEIFLESCTLC--KEITAQTKRNSYKKRNIINKLPEEEEEEEEEEEEEEEEEEQEEEVE 183
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKET-RIQHQWRNRSQRRTNQLKPLRK 352
+ T ++EE E EE PA E+EE +EE +ET + + + ++ ++ K K
Sbjct: 184 KPT-ISEE---EEEETPAVSEEEKEEEEEEEEETPAVSEEEKEEEEQEEDKEKDKEK 236
Score = 90 (31.7 bits), Expect = 0.27, P = 0.24
Identities = 35/127 (27%), Positives = 61/127 (48%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
E ++TP V+E E E + EE TP +EE KEE +E +E++ + E
Sbjct: 190 EEEEETPA-VSEEEKEEEEEEEEETP-------AVSEEEKEEEEQEEDKEKDKEKKIEED 241
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNNF 370
TE T + K EV ER + E+ E+T + + + + ++ +++K + K+ N
Sbjct: 242 TE-TGKKKDEVMN----ERQDGIEISEKTNDKPTE---KTKVKKNVSRVKDINLHKKGNP 293
Query: 371 LFEKDWK 391
+ K K
Sbjct: 294 ITPKKIK 300
>gi|9626029 ref|NP_040275.1| ORF 73~ECLF1 [Saimiriine herpesvirus 2]
>gi|266334|sp|Q01042|IE68_HSVSA IMMEDIATE-EARLY PROTEIN
>gi|73643|pir||EDBEQ3 immediate-early protein - saimiriine
herpesvirus 1 (strain 11) >gi|60394|emb|CAA45696.1| (X64346) ORF
73~ECLF1 [Saimiriine herpesvirus 2] >gi|243353|gb|AAB21116.1|
(S76368) ORF 5' of ECRF3 [herpesvirus saimiri HVS, host-squirrel
monkey, Peptide, 407 aa] [Saimiriine herpesvirus 2]
>gi|331002|gb|AAA46149.1| (M86409) first methionine codon in the
ECLF1 ORF [Saimiriine herpesvirus 2]
Length = 407
Frame 2 hits (HSPs): ___________________________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 407
0 150 300
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 41/117 (35%), Positives = 55/117 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E A++ E EA E EE E + A + E + E +EA+E EEA E
Sbjct: 142 EAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEA 201
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPL-RKP 355
EA E EE + E EE A E E EE +EE +E + + S R K + +KP
Sbjct: 202 EEAEEEAEEAEEEAEE--AEEAEEAEEAEEEAEEAEEEEEEAGPSTPRLPHYKVVGQKP 258
Score = 130 (45.8 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 38/97 (39%), Positives = 48/97 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE---EEAPV 175
E E A++ E EA E EE E+ A + EE +EE +EA+EE EEA
Sbjct: 107 EEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEE-EEAEEAEEEEAEEAEEEAEEEEAEE 165
Query: 176 ETNEATEVTEEVKPEVEENP--APERTEEEELKEETKE 283
E E E EE + E EE A E E EE +EE +E
Sbjct: 166 EAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEAEE 203
Score = 129 (45.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/91 (38%), Positives = 45/91 (49%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
E A++ E E E + EE E+ A + EE EE +EA+EEE E EA
Sbjct: 94 EEAEEEEAEEKEAEEEEAEEAEEEAEEEEAEEAEAEEEEAEE--EEAEEEEAEEAEEEEA 151
Query: 191 TEVTEEVKPEVEENPAPERTEE-EELKEETKE 283
E EE + E E A E EE EE +EE +E
Sbjct: 152 EEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEE 183
Score = 125 (44.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 39/117 (33%), Positives = 52/117 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
E E ++ E EA E + EE E+ + EE +EE +EA+E EEA E
Sbjct: 135 EEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAE-E 193
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
EA E EE + E EE A E EE E EE +E + + + P R P
Sbjct: 194 AEEAEEEAEEAEEEAEE--AEEEAEEAEEAEEAEEAEEEAEEAEEEEEEAGPSTP-RLP 249
Score = 117 (41.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 37/96 (38%), Positives = 47/96 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQP--ATQVTTTEEPKEETTKEAKEEEEAPVE 178
E E A+ E EA E + EE E+ A + EE +EE +EA+E EEA E
Sbjct: 122 EAEEAEAEEEEAEEEEAEE-EEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEE 180
Query: 179 TNEATEVTEEVKPEVE-ENPAPERTEE-EELKEETKE 283
E E EE + E E A E EE EE +EE +E
Sbjct: 181 AEEEAEEAEEAEEAEEAEEEAEEAEEEAEEAEEEAEE 217
Score = 116 (40.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 33/94 (35%), Positives = 42/94 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E + E EA E + E E+ A + EE +EE + + EEEA E
Sbjct: 127 EAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAE 186
Query: 185 EATEVTEEVKPEVEENPAPERTEE-EELKEETKE 283
EA E E + E E A E EE EE EE +E
Sbjct: 187 EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEE 220
Score = 112 (39.4 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 35/87 (40%), Positives = 42/87 (48%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE--EAPVETNEATE--VTEEV 211
E E E + E E+ A + EE EE +EA+EEE EA E EA E EE
Sbjct: 83 EGEGGEEGEGREEAEEEEAEEKEAEEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEEEE 142
Query: 212 KPEVEENPAPE---RTEEEELKEETKE 283
E EE A E EEEE +EE +E
Sbjct: 143 AEEAEEEEAEEAEEEAEEEEAEEEAEE 169
Score = 97 (34.1 bits), Expect = 0.0027, Sum P(2) = 0.0027
Identities = 33/98 (33%), Positives = 45/98 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKE-ETTKEAKEEE--EAPV 175
++ Q +TE + E + E E+ + E +E E +EA+EEE E
Sbjct: 47 DINTTHQQQAALTEEQRREEVEEEGEERERRGEEEREGEGGEEGEGREEAEEEEAEEKEA 106
Query: 176 ETNEATEVTEEVKPE-VEENPAPER-TEEEELKEETKE 283
E EA E EE + E EE A E EEEE +EE E
Sbjct: 107 EEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEEEEAE 144
Score = 90 (31.7 bits), Expect = 0.38, P = 0.32
Identities = 27/77 (35%), Positives = 35/77 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E A++ E EA E + EE E + A + E + E +EA+E EEA E
Sbjct: 173 EAEEAEEEAEEEAE-EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEA 231
Query: 182 NEATEVTEEVKPEVEENP 235
EA E EE P P
Sbjct: 232 EEAEEEEEEAGPSTPRLP 249
Score = 87 (30.6 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 27/71 (38%), Positives = 35/71 (49%), Frame = +2
Query: 80 TTPEQPA--TQVTTTEEPKEE-TTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERT 250
TT +Q A T+ EE +EE +E + EEE E E E EE + E E E
Sbjct: 50 TTHQQQAALTEEQRREEVEEEGEERERRGEEEREGEGGEEGEGREEAEEEEAEEKEAEEE 109
Query: 251 EEEELKEETKE 283
E EE +EE +E
Sbjct: 110 EAEEAEEEAEE 120
Score = 40 (14.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 9/21 (42%), Positives = 12/21 (57%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+ EE + AE EE E+
Sbjct: 164 EEEAEEEAEEAEEAEEEAEEE 184
Score = 40 (14.1 bits), Expect = 0.0027, Sum P(2) = 0.0027
Identities = 9/21 (42%), Positives = 14/21 (66%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE++ EE + AE EE + E+
Sbjct: 134 EEEEAEEEE-AEEAEEEEAEE 153
Score = 39 (13.7 bits), Expect = 0.16, Sum P(2) = 0.15
Identities = 8/21 (38%), Positives = 11/21 (52%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+ EE E EE + E+
Sbjct: 130 EEEAEEEEAEEEEAEEAEEEE 150
Score = 38 (13.4 bits), Expect = 0.0043, Sum P(2) = 0.0043
Identities = 9/23 (39%), Positives = 12/23 (52%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTE 363
A EE + E + AE EE + E
Sbjct: 158 AEEEEAEEEAEEEAEEAEEAEEE 180
>gi|228477|prf||1804350B ECLF2 upstream ORF [Saimiriine herpesvirus 1]
Length = 407
Frame 2 hits (HSPs): ___________________________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 407
0 150 300
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 41/117 (35%), Positives = 55/117 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E A++ E EA E EE E + A + E + E +EA+E EEA E
Sbjct: 142 EAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEA 201
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPL-RKP 355
EA E EE + E EE A E E EE +EE +E + + S R K + +KP
Sbjct: 202 EEAEEEAEEAEEEAEE--AEEAEEAEEAEEEAEEAEEEEEEAGPSTPRLPHYKVVGQKP 258
Score = 130 (45.8 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 38/97 (39%), Positives = 48/97 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE---EEAPV 175
E E A++ E EA E EE E+ A + EE +EE +EA+EE EEA
Sbjct: 107 EEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEE-EEAEEAEEEEAEEAEEEAEEEEAEE 165
Query: 176 ETNEATEVTEEVKPEVEENP--APERTEEEELKEETKE 283
E E E EE + E EE A E E EE +EE +E
Sbjct: 166 EAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEAEE 203
Score = 129 (45.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/91 (38%), Positives = 45/91 (49%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
E A++ E E E + EE E+ A + EE EE +EA+EEE E EA
Sbjct: 94 EEAEEEEAEEKEAEEEEAEEAEEEAEEEEAEEAEAEEEEAEE--EEAEEEEAEEAEEEEA 151
Query: 191 TEVTEEVKPEVEENPAPERTEE-EELKEETKE 283
E EE + E E A E EE EE +EE +E
Sbjct: 152 EEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEE 183
Score = 125 (44.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 39/117 (33%), Positives = 52/117 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
E E ++ E EA E + EE E+ + EE +EE +EA+E EEA E
Sbjct: 135 EEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAE-E 193
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
EA E EE + E EE A E EE E EE +E + + + P R P
Sbjct: 194 AEEAEEEAEEAEEEAEE--AEEEAEEAEEAEEAEEAEEEAEEAEEEEEEAGPSTP-RLP 249
Score = 117 (41.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 37/96 (38%), Positives = 47/96 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQP--ATQVTTTEEPKEETTKEAKEEEEAPVE 178
E E A+ E EA E + EE E+ A + EE +EE +EA+E EEA E
Sbjct: 122 EAEEAEAEEEEAEEEEAEE-EEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEE 180
Query: 179 TNEATEVTEEVKPEVE-ENPAPERTEE-EELKEETKE 283
E E EE + E E A E EE EE +EE +E
Sbjct: 181 AEEEAEEAEEAEEAEEAEEEAEEAEEEAEEAEEEAEE 217
Score = 116 (40.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 33/94 (35%), Positives = 42/94 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E + E EA E + E E+ A + EE +EE + + EEEA E
Sbjct: 127 EAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAE 186
Query: 185 EATEVTEEVKPEVEENPAPERTEE-EELKEETKE 283
EA E E + E E A E EE EE EE +E
Sbjct: 187 EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEE 220
Score = 112 (39.4 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 35/87 (40%), Positives = 42/87 (48%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE--EAPVETNEATE--VTEEV 211
E E E + E E+ A + EE EE +EA+EEE EA E EA E EE
Sbjct: 83 EGEGGEEGEGREEAEEEEAEEKEAEEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEEEE 142
Query: 212 KPEVEENPAPE---RTEEEELKEETKE 283
E EE A E EEEE +EE +E
Sbjct: 143 AEEAEEEEAEEAEEEAEEEEAEEEAEE 169
Score = 97 (34.1 bits), Expect = 0.0027, Sum P(2) = 0.0027
Identities = 33/98 (33%), Positives = 45/98 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKE-ETTKEAKEEE--EAPV 175
++ Q +TE + E + E E+ + E +E E +EA+EEE E
Sbjct: 47 DINTTHQQQAALTEEQRREEVEEEGEERERRGEEEREGEGGEEGEGREEAEEEEAEEKEA 106
Query: 176 ETNEATEVTEEVKPE-VEENPAPER-TEEEELKEETKE 283
E EA E EE + E EE A E EEEE +EE E
Sbjct: 107 EEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEEEEAE 144
Score = 90 (31.7 bits), Expect = 0.38, P = 0.32
Identities = 27/77 (35%), Positives = 35/77 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E E A++ E EA E + EE E + A + E + E +EA+E EEA E
Sbjct: 173 EAEEAEEEAEEEAE-EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEA 231
Query: 182 NEATEVTEEVKPEVEENP 235
EA E EE P P
Sbjct: 232 EEAEEEEEEAGPSTPRLP 249
Score = 87 (30.6 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 27/71 (38%), Positives = 35/71 (49%), Frame = +2
Query: 80 TTPEQPA--TQVTTTEEPKEE-TTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERT 250
TT +Q A T+ EE +EE +E + EEE E E E EE + E E E
Sbjct: 50 TTHQQQAALTEEQRREEVEEEGEERERRGEEEREGEGGEEGEGREEAEEEEAEEKEAEEE 109
Query: 251 EEEELKEETKE 283
E EE +EE +E
Sbjct: 110 EAEEAEEEAEE 120
Score = 40 (14.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 9/21 (42%), Positives = 12/21 (57%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+ EE + AE EE E+
Sbjct: 164 EEEAEEEAEEAEEAEEEAEEE 184
Score = 40 (14.1 bits), Expect = 0.0027, Sum P(2) = 0.0027
Identities = 9/21 (42%), Positives = 14/21 (66%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE++ EE + AE EE + E+
Sbjct: 134 EEEEAEEEE-AEEAEEEEAEE 153
Score = 39 (13.7 bits), Expect = 0.16, Sum P(2) = 0.15
Identities = 8/21 (38%), Positives = 11/21 (52%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+ EE E EE + E+
Sbjct: 130 EEEAEEEEAEEEEAEEAEEEE 150
Score = 38 (13.4 bits), Expect = 0.0043, Sum P(2) = 0.0043
Identities = 9/23 (39%), Positives = 12/23 (52%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTE 363
A EE + E + AE EE + E
Sbjct: 158 AEEEEAEEEAEEEAEEAEEAEEE 180
>gi|6977825|emb|CAB43739.2| (AJ238577) titin [Drosophila melanogaster]
Length = 796
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ________ _______
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | 796
0 150 300 450 600 750
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 30/90 (33%), Positives = 49/90 (54%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTP--EQPATQVTTTEEPK-EETTKEAKEEEEAPVE 178
+EV + P V + E + + K + P E+P ++T + K EE +EAK ++ P +
Sbjct: 35 IEVKESQPEAVEDKEVS-LPKKKPKAPIVEEPEAEITLKPKAKSEEVQEEAKIVKKKPKK 93
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEE 274
+E V +E+ +VEE PE EEE+ EE
Sbjct: 94 IDEVA-VADELTVKVEEEVVPEPIVEEEVIEE 124
Score = 86 (30.3 bits), Expect = 0.053, Sum P(2) = 0.052
Identities = 29/92 (31%), Positives = 48/92 (52%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTK-IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
+V + ++ PT E E E+ + IEE E+PA V +E + E ++ +E P +
Sbjct: 2 KVTITEEIPT---EPEVQEIIEEIEEIEEEKPAEYVIEVKESQPEAVED--KEVSLPKKK 56
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETK 280
+A + EE PE E P + + EE++EE K
Sbjct: 57 PKAP-IVEE--PEAEITLKP-KAKSEEVQEEAK 85
Score = 81 (28.5 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 26/80 (32%), Positives = 42/80 (52%), Frame = +2
Query: 35 TVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTK-EAKEEEEAPVETNEATEVTEEV 211
T+ TEVT+ E + + + TEE ++T + + K++ + PVE EA + +
Sbjct: 163 TLKPKAKTEVTEEEFSVDVKLPKEKKVTEETSDQTVQLKKKKKPQKPVE--EAADELKLQ 220
Query: 212 KPEVEENPAPERTEEEELKEE 274
+ VEE P EEEE+ EE
Sbjct: 221 QTVVEERPV--EIEEEEIIEE 239
Score = 73 (25.7 bits), Expect = 3.1, Sum P(2) = 0.95
Identities = 33/109 (30%), Positives = 46/109 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENE-ATEVT-----KIEETTPEQPAT--QVTTTEEPKEETTKEAKEE 160
EV + + T VTE E + +V K+ E T +Q + ++P EE E K +
Sbjct: 161 EVTLKPKAKTEVTEEEFSVDVKLPKEKKVTEETSDQTVQLKKKKKPQKPVEEAADELKLQ 220
Query: 161 ----EEAPVETNEATEVTEEV----KPEVEENPAPERTEEEELKEETKE 283
EE PVE E + E V KP+ P E EE E K+
Sbjct: 221 QTVVEERPVEIEEEEIIEEAVVIRKKPKKPFEPTVEDLEETEFSLSFKK 269
Score = 52 (18.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 10/22 (45%), Positives = 18/22 (81%), Frame = +1
Query: 313 KPEEN-KPAETVEETQTEQFLV 375
KP+++ KPA +V++ + EQFL+
Sbjct: 464 KPKKHPKPAYSVQDEEEEQFLI 485
Score = 37 (13.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 7/18 (38%), Positives = 10/18 (55%), Frame = +3
Query: 348 GNPNRTISCLRKTGSLSP 401
GNP I+ R+T + P
Sbjct: 637 GNPRPQIAWFRETAIIKP 654
>gi|9558597|gb|AAF88160.1|AC026234_11 (AC026234) Contains weak similarity to an
unknown protein T23E18.5 gi|6573728 from Arabidopsis thaliana BAC
T23E18 gb|AC009978. EST gb|W43440 comes from this gene
Length = 409
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 409
0 150 300
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 35/120 (29%), Positives = 56/120 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 289 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 348
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQN 364
E E EE + E EE E EEEE +EE +E + + +++ +K +K +++
Sbjct: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKKRRS 408
Score = 130 (45.8 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 34/86 (39%), Positives = 43/86 (50%), Frame = +2
Query: 26 TPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTE 205
TP+ V E T V EE E+ + EE +EE +E +EEEE E E E E
Sbjct: 261 TPSMVHVGEGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 320
Query: 206 EVKPEVEENPAPERTEEEELKEETKE 283
E + E EE E EEEE +EE +E
Sbjct: 321 EEEEEEEEEEEEEEEEEEEEEEEEEE 346
Score = 130 (45.8 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 35/108 (32%), Positives = 51/108 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 301 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 360
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRT 328
E E EE + E EE E EEEE +EE +E + + + +RR+
Sbjct: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKKRRS 408
Score = 129 (45.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 34/118 (28%), Positives = 53/118 (44%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E E + EE E+ + EE +EE +E +EEEE E E E EE + E
Sbjct: 288 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 347
Query: 224 EENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNNFLFEKDWKLK 397
EE E EEEE +EE +E + + + + + + ++ ++ K K K
Sbjct: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKK 405
Score = 129 (45.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/119 (29%), Positives = 53/119 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 286 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 345
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQ 361
E E EE + E EE E EEEE +EE +E + + + + ++K K+
Sbjct: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKK 404
Score = 128 (45.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/92 (36%), Positives = 44/92 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
V V + T E E E + EE E+ + EE +EE +E +EEEE E E
Sbjct: 265 VHVGEGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 324
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E EE + E EE E EEEE +EE +E
Sbjct: 325 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 356
Score = 126 (44.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 35/119 (29%), Positives = 52/119 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 287 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 346
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQ 361
E E EE + E EE E EEEE +EE +E + + + + +K K+
Sbjct: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKKKK 405
Score = 125 (44.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/112 (30%), Positives = 49/112 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 284 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 343
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLK 340
E E EE + E EE E EEEE +EE +E + + + + K
Sbjct: 344 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKK 395
Score = 124 (43.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 35/119 (29%), Positives = 52/119 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 285 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 344
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQ 361
E E EE + E EE E EEEE +EE +E + + + + + K K+
Sbjct: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKK 403
Score = 122 (42.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 32/92 (34%), Positives = 44/92 (47%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
V+ ++ E E E + EE E+ + EE +EE +E +EEEE E E
Sbjct: 273 VQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 332
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E EE + E EE E EEEE +EE +E
Sbjct: 333 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 364
Score = 121 (42.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 33/93 (35%), Positives = 43/93 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E + Q E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 269 EGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 328
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E E EE + E EE E EEEE +EE +E
Sbjct: 329 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 361
Score = 121 (42.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 32/93 (34%), Positives = 44/93 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
+ E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 274 QAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 333
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E E EE + E EE E EEEE +EE +E
Sbjct: 334 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 366
>gi|7498774|pir||T32490 hypothetical protein F09G2.9 - Caenorhabditis elegans
>gi|2435616|gb|AAB71317.1| (AF026215) F09G2.9 gene product
[Caenorhabditis elegans]
Length = 415
Frame 2 hits (HSPs): ________________________
Frame 1 hits (HSPs): _____ ___
__________________________________________________
Database sequence: | | | | 415
0 150 300
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 38/93 (40%), Positives = 52/93 (55%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIE--ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
E +V+++ P T +E A +VT+ + E T + PA EP E + AKEE +
Sbjct: 61 EAKVSEE-PATTSETPAAQVTESQKDEKTDDAPA-------EPAEVAVEAAKEEPVVEEK 112
Query: 179 TNEATE--VTEEVKPEVEENPAPERTEEEEL--KEETKE 283
+A E VTEE K E E PAPE + EE+ EE KE
Sbjct: 113 KEDAPEPVVTEEKKSE--EAPAPEEKKSEEVVAAEEKKE 149
Score = 106 (37.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 39/95 (41%), Positives = 46/95 (48%), Frame = +2
Query: 41 TENEATEVTKIEE--TTPEQPATQVTTTE----------EPKEETTKEAKEEEEAPVETN 184
TE E EE TT E PA QVT ++ EP E + AKEE +
Sbjct: 55 TEEPVVEAKVSEEPATTSETPAAQVTESQKDEKTDDAPAEPAEVAVEAAKEEPVVEEKKE 114
Query: 185 EATE--VTEEVKPEVEENPAPERTEEEEL--KEETKE 283
+A E VTEE K E E PAPE + EE+ EE KE
Sbjct: 115 DAPEPVVTEEKKSE--EAPAPEEKKSEEVVAAEEKKE 149
Score = 88 (31.0 bits), Expect = 0.71, P = 0.51
Identities = 30/96 (31%), Positives = 47/96 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E + +++ P E ++ EV EE ++PA V +E E E K+EE AP +
Sbjct: 123 EEKKSEEAPAP-EEKKSEEVVAAEEK--KEPAAVVEEKKEVPETPVVEDKKEE-APASSE 178
Query: 185 EATE---VTEEVKPEVEENPAPERTEEEELKEETKETRI 292
E + V E K + E PA + E E +E+ ET +
Sbjct: 179 EKKDEPVVNTEEKKDAAEAPAADE-ESEAAEEKVAETTV 216
Score = 83 (29.2 bits), Expect = 0.77, Sum P(2) = 0.54
Identities = 30/86 (34%), Positives = 37/86 (43%), Frame = +2
Query: 17 AQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEE--APVETNEA 190
A P V A E +EE + P VT ++ +E E K+ EE A E E
Sbjct: 91 APAEPAEVAVEAAKEEPVVEEKKEDAPEPVVTEEKKSEEAPAPEEKKSEEVVAAEEKKEP 150
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEE 274
V EE K EV E P E + KEE
Sbjct: 151 AAVVEE-KKEVPETPVVE-----DKKEE 172
Score = 80 (28.2 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 35/96 (36%), Positives = 47/96 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E +A E+ A E+ +T E T + E+ EE EAK EE P T+
Sbjct: 19 EKVIADSLEAKKDESAAVEING--SSTHENGDTNI---EKKTEEPVVEAKVSEE-PATTS 72
Query: 185 E--ATEVTEEVKPE-VEENPA-P-----ERTEEEELKEETKE 283
E A +VTE K E ++ PA P E +EE + EE KE
Sbjct: 73 ETPAAQVTESQKDEKTDDAPAEPAEVAVEAAKEEPVVEEKKE 114
Score = 45 (15.8 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 13/32 (40%), Positives = 18/32 (56%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEETQTEQFLV*E 381
P P EE+K EE PA EE ++E+ + E
Sbjct: 117 PEPVVTEEKKSEE-APAP--EEKKSEEVVAAE 145
Score = 38 (13.4 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 9/17 (52%), Positives = 10/17 (58%), Frame = +1
Query: 292 PAPVEEQKPEENKPAET 342
PA EE + E K AET
Sbjct: 198 PAADEESEAAEEKVAET 214
Score = 38 (13.4 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 9/22 (40%), Positives = 15/22 (68%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
VEE+K + +P T EE ++E+
Sbjct: 109 VEEKKEDAPEPVVT-EEKKSEE 129
>gi|2367429|gb|AAB69643.1| (AF000402) Nlj21 [Lotus japonicus]
Length = 192
Frame 2 hits (HSPs): ____________________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 192
0 50 100 150
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 34/88 (38%), Positives = 43/88 (48%), Frame = +2
Query: 32 TTVTENEATEVT-KIEETTPE--QPATQVTTTEEPK--EETTKEAKEEEEAPVETNEATE 196
T +E E TE IE T E + VT T+EPK E+T EAK+E ET E+ +
Sbjct: 56 TEASEPEPTEDNPSIEAETTEVVEEVVTVTVTDEPKVEEKTDGEAKKEATETKETKESAD 115
Query: 197 VTEEVKPEVEENPAPERTEEEELKEETK 280
E PE E P +E+ KEE K
Sbjct: 116 PVEVQAPEAGEEPETVTLKEDASKEEEK 143
Score = 103 (36.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 32/94 (34%), Positives = 48/94 (51%), Frame = +2
Query: 26 TPTTVTENEATEVTKIEET-TPE-QPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
T ++ ++E ++ ET TPE +P ++ T E+ E + E+ P E TEV
Sbjct: 18 TKASLKDHEEKTTEQVVETQTPEPEPVSEKTKEEDSAVTEASEPEPTEDNPSIEAETTEV 77
Query: 200 TEEVKP-EVEENP-APERTEEEELKE--ETKETR 289
EEV V + P E+T+ E KE ETKET+
Sbjct: 78 VEEVVTVTVTDEPKVEEKTDGEAKKEATETKETK 111
Score = 96 (33.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 30/96 (31%), Positives = 47/96 (48%), Frame = +2
Query: 26 TPTTVTENEATEVTKIEET-TPE-QPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
T ++ ++E ++ ET TPE +P ++ T E+ E + E+ P E TEV
Sbjct: 18 TKASLKDHEEKTTEQVVETQTPEPEPVSEKTKEEDSAVTEASEPEPTEDNPSIEAETTEV 77
Query: 200 TEEV-------KPEVEENPAPERTEEEELKEETKET 286
EEV +P+VEE E +E +ETKE+
Sbjct: 78 VEEVVTVTVTDEPKVEEKTDGEAKKEATETKETKES 113
Score = 91 (32.0 bits), Expect = 0.065, P = 0.063
Identities = 33/110 (30%), Positives = 51/110 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEET------TKEAKEEEE 166
E E + VT T+ K+EE T + + T T+E KE EA EE E
Sbjct: 71 EAETTEVVEEVVTVT-VTDEPKVEEKTDGEAKKEATETKETKESADPVEVQAPEAGEEPE 129
Query: 167 APVETNEATEVTEEV-KPEVEEN----PAP-ERTEEEELKEETKETRIQHQ 301
+A++ E+V +PE +E AP E+ EEE+L E + + + +
Sbjct: 130 TVTLKEDASKEEEKVAEPEAKEEVVNTEAPDEKKEEEKLDTEGSDEKKEEE 180
Score = 83 (29.2 bits), Expect = 0.83, P = 0.57
Identities = 31/94 (32%), Positives = 47/94 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE--AKEEEE-APV 175
E +V ++T + EATE + +E+ EEP+ T KE +KEEE+ A
Sbjct: 89 EPKVEEKTDGEA-KKEATETKETKESADPVEVQAPEAGEEPETVTLKEDASKEEEKVAEP 147
Query: 176 ETNEA---TEVTEEVKPE--VEENPAPERTEEEEL 265
E E TE +E K E ++ + E+ EEEE+
Sbjct: 148 EAKEEVVNTEAPDEKKEEEKLDTEGSDEKKEEEEV 182
Score = 42 (14.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/16 (56%), Positives = 10/16 (62%), Frame = +1
Query: 298 PVEEQKPEENKPAETV 345
PVE Q PE + ETV
Sbjct: 116 PVEVQAPEAGEEPETV 131
>gi|9837385|gb|AAG00554.1|AF286475_1 (AF286475) retinitis pigmentosa GTPase
regulator-like protein [Takifugu rubripes]
Length = 791
Frame 2 hits (HSPs): ________________________________
Frame 1 hits (HSPs): ___ ___ ____
__________________________________________________
Database sequence: | | | | | | | 791
0 150 300 450 600 750
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 33/80 (41%), Positives = 41/80 (51%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPA-TQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPE 220
E E+ E + EE E+ T V EE +EET KE ++EEE ET + E EE
Sbjct: 612 EEESEEQNQEEEAEEEEDGETDVQEEEEEEEETEKEEEDEEE---ETEKEEEDEEEETDR 668
Query: 221 VEENPAPERTEEEELKEETKE 283
VEE E EEEE +E E
Sbjct: 669 VEEEEDAEENEEEEEEESNSE 689
Score = 116 (40.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/103 (30%), Positives = 51/103 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E + + E+E+ E EE ++ + +E +EE ++E +EEEA E +
Sbjct: 570 EKEESNEEEEEEEESESNEEESEEEDQKDEEEEETGEEDEEEEEESEEQNQEEEAEEEED 629
Query: 185 EATEVTEEVKPEVE----ENPAPERTEEEELKEETKETRIQHQ 301
T+V EE + E E E E TE+EE EE + R++ +
Sbjct: 630 GETDVQEEEEEEEETEKEEEDEEEETEKEEEDEEEETDRVEEE 672
Score = 116 (40.8 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 30/115 (26%), Positives = 56/115 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
+Q+ T E+ E + E + E+ + + +E +EET +E +EEEE E N+ E
Sbjct: 565 EQSSTEKEESNEEEEEEEESESNEEESEEEDQKDEEEEETGEEDEEEEEESEEQNQEEEA 624
Query: 200 TEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQN 364
EE E + E EE E +EE +E + + + + T++++ ++N
Sbjct: 625 EEEEDGETDVQEEEEEEEETEKEEEDEEEETEKEEEDEEEE-TDRVEEEEDAEEN 678
Score = 112 (39.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 31/94 (32%), Positives = 42/94 (44%), Frame = +2
Query: 2 HEVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
+E E ++ E E E + EE E+ + EE ET + +EEEE E
Sbjct: 587 NEEESEEEDQKDEEEEETGEEDEEEEEESEEQNQEEEAEEEEDGETDVQEEEEEEEETEK 646
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E E E K E +E +R EEEE EE +E
Sbjct: 647 EEEDEEEETEKEEEDEEEETDRVEEEEDAEENEE 680
Score = 111 (39.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 28/81 (34%), Positives = 41/81 (50%), Frame = +2
Query: 41 TENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPE 220
TE E + + T E+ + + + KEE+ +E +EEEE+ E+NE E+ K E
Sbjct: 542 TEKEESNEEEQSSTEKEEESNEEEQSSTEKEESNEEEEEEEES--ESNEEESEEEDQKDE 599
Query: 221 VEENPAPERTEEEELKEETKE 283
EE E EEEE EE +
Sbjct: 600 EEEETGEEDEEEEEESEEQNQ 620
Score = 111 (39.1 bits), Expect = 0.00024, P = 0.00024
Identities = 28/89 (31%), Positives = 48/89 (53%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E + + EE+ E+ + + +EE +EE E++ EEE E+ E EE + E
Sbjct: 682 EEEESNSEEDEESDGEEEEDEESDSEEDEEE---ESESEEEEGEESESEEEEGEESESEE 738
Query: 224 EENPAPERTEEEELKEETKETRIQHQWRN 310
EE +R EEEE+K++ + ++ Q R+
Sbjct: 739 EEGEESDREEEEEIKKKKRPVKLGRQHRS 767
Score = 109 (38.4 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 34/103 (33%), Positives = 49/103 (47%), Frame = +2
Query: 2 HEVEVAQQTPTTVTENEATEVTKIEETTPE-QPATQVT-TTEEPKEETTKEAKEEE-EAP 172
+E E + E E + K EE+ E Q +T+ + EE +EE E+ EEE E
Sbjct: 535 NEEEQSSTEKEESNEEEQSSTEKEEESNEEEQSSTEKEESNEEEEEEEESESNEEESEEE 594
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
+ +E E T E E EE + EEE +EE ET +Q +
Sbjct: 595 DQKDEEEEETGEEDEEEEEESEEQNQEEEAEEEEDGETDVQEE 637
Score = 109 (38.4 bits), Expect = 0.00040, P = 0.00040
Identities = 33/93 (35%), Positives = 43/93 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E + T V E E E +E E+ T+ EE +EE T +EEE+A E N
Sbjct: 623 EAEEEEDGETDVQEEEEEEEETEKEEEDEEEETE--KEEEDEEEETDRVEEEEDA--EEN 678
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E E E E EE+ E +EE EE +E
Sbjct: 679 EEEEEEESNSEEDEESDGEEEEDEESDSEEDEE 711
Score = 108 (38.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/94 (26%), Positives = 45/94 (47%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
Q+T V+E E VT+ + ++ + T P++E+ + ++EEE + E
Sbjct: 325 QKTSADVSEEEEENVTQSSDKASDEEKEGDSDTLHPEDESQSDVEDEEEGESRSEGQEEE 384
Query: 200 TEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
EE + E E + E E+E K E KE ++ +
Sbjct: 385 EEEEEEEEERSSTAESESEDEKKGERKERDVEEE 418
Score = 107 (37.7 bits), Expect = 0.00065, P = 0.00065
Identities = 30/93 (32%), Positives = 44/93 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E +Q E E T ++E E+ T+ EE +EE T++ +E+EE +
Sbjct: 612 EEESEEQNQEEEAEEEEDGETDVQEEEEEEEETE--KEEEDEEEETEKEEEDEEEETDRV 669
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E E EE + E EE E EE + +EE E
Sbjct: 670 EEEEDAEENEEEEEEESNSEEDEESDGEEEEDE 702
Score = 104 (36.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/112 (26%), Positives = 47/112 (41%), Frame = +2
Query: 2 HEVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVT--TTEEPKEETTKEAKEEEEAPV 175
+E E + E E + K E EQ +T+ + EE + T KE EEE
Sbjct: 495 NEEEQSSTEKEESNEEEQSSTEKEESNEEEQSSTEKEGESNEEEQSSTEKEESNEEEQS- 553
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
T + E EE + E+ + E EEEE E +E + ++ + T +
Sbjct: 554 STEKEEESNEEEQSSTEKEESNEEEEEEEESESNEEESEEEDQKDEEEEETGE 606
Score = 103 (36.3 bits), Expect = 0.0052, P = 0.0052
Identities = 32/117 (27%), Positives = 57/117 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E+E E ++EE E+ A + EE +EE+ E EE + E +
Sbjct: 647 EEEDEEEETEKEEEDEEEETDRVEE---EEDAEE--NEEEEEEESNSEEDEESDGEEEED 701
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ-LKPLRKP 355
E ++ +EE + E E+ E E E +EE +E+ + + S R + +K ++P
Sbjct: 702 EESD-SEEDEEEESESEEEEGEESESEEEEGEESESEEEEGEESDREEEEEIKKKKRP 758
Score = 102 (35.9 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 28/97 (28%), Positives = 46/97 (47%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E +TE + E EQ +T+ + E ++ +T++ +E E + E E EE + E
Sbjct: 524 EQSSTE-KEGESNEEEQSSTEKEESNEEEQSSTEKEEESNEEEQSSTEKEESNEEEEEEE 582
Query: 224 EENPAPERTEEEELK-EETKETRIQHQWRNRSQRRTNQ 334
E E +EEE+ K EE +ET + + NQ
Sbjct: 583 ESESNEEESEEEDQKDEEEEETGEEDEEEEEESEEQNQ 620
Score = 100 (35.2 bits), Expect = 0.0032, Sum P(2) = 0.0032
Identities = 27/87 (31%), Positives = 41/87 (47%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E + K E E+ + + EE EE ++ +EEEE E E E +EE E
Sbjct: 563 EEEQSSTEKEESNEEEEEEEESESNEEESEEEDQKDEEEEETGEEDEEEEEESEEQNQEE 622
Query: 224 E-ENPAPERTEEEELKEETKETRIQHQ 301
E E T+ +E +EE +ET + +
Sbjct: 623 EAEEEEDGETDVQEEEEEEEETEKEEE 649
Score = 97 (34.1 bits), Expect = 0.018, Sum P(2) = 0.018
Identities = 26/85 (30%), Positives = 44/85 (51%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTK---EAKEEEEAPVETNEATEVTEEVK 214
E E + K E EQ +T+ + E ++ +T+ E+ EEE++ E E+ E +
Sbjct: 496 EEEQSSTEKEESNEEEQSSTEKEESNEEEQSSTEKEGESNEEEQSSTEKEESNEEEQSST 555
Query: 215 PEVEENPAPER--TEEEELKEETKE 283
+ EE+ E+ TE+EE EE +E
Sbjct: 556 EKEEESNEEEQSSTEKEESNEEEEE 580
Score = 96 (33.8 bits), Expect = 0.12, P = 0.11
Identities = 31/93 (33%), Positives = 47/93 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E +V Q+ E E E + EET E+ + T +EE +E +EEEE E+N
Sbjct: 631 ETDV-QEEEEEEEETEKEEEDEEEETEKEEEDEEEETDRVEEEEDAEENEEEEEE--ESN 687
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
+E EE E EE+ + E+EE + E++E
Sbjct: 688 --SEEDEESDGEEEEDEESDSEEDEEEESESEE 718
Score = 95 (33.4 bits), Expect = 0.025, Sum P(2) = 0.025
Identities = 30/100 (30%), Positives = 51/100 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEE--TTKEAKEEEEAPVE 178
E E +Q +VT NE E I+ T E+ + E+ KEE T+ + EEEE V
Sbjct: 282 ETEGSQDKSESVTANEEDEKESIQGTEEEEEEEE-EEEEDQKEEQKTSADVSEEEEENV- 339
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETK-ETRIQHQ 301
T + + ++E K + PE + ++++E + E+R + Q
Sbjct: 340 TQSSDKASDEEKEGDSDTLHPEDESQSDVEDEEEGESRSEGQ 381
Score = 88 (31.0 bits), Expect = 1.6, P = 0.80
Identities = 31/125 (24%), Positives = 59/125 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAK--EEEEAPVE 178
E E ++ +++E E + E + + T+ EE + T KE + EEE++ E
Sbjct: 444 EEEGEEEEADSLSEEEEGDSKSDAEESDAESETEGEGAEEEQSSTEKEGESNEEEQSSTE 503
Query: 179 TNEATEVTEEVKPEVEENPAPER--TEEE-ELKEETKETRIQHQWRNRSQRRTNQLKPLR 349
E+ E E+ E EE+ E+ TE+E E EE + + + + Q T + +
Sbjct: 504 KEESNE-EEQSSTEKEESNEEEQSSTEKEGESNEEEQSSTEKEESNEEEQSSTEKEEESN 562
Query: 350 KPKQNN 367
+ +Q++
Sbjct: 563 EEEQSS 568
Score = 87 (30.6 bits), Expect = 0.79, Sum P(2) = 0.55
Identities = 29/91 (31%), Positives = 43/91 (47%), Frame = +2
Query: 41 TENEATEVTKIEETTPEQPATQVTTTEEPKEETT----KEAKEEEEAPVET----NEA-T 193
TE E E + EE E+ T +EE +E T K + EE+E +T +E+ +
Sbjct: 307 TEEEEEEEEEEEEDQKEEQKTSADVSEEEEENVTQSSDKASDEEKEGDSDTLHPEDESQS 366
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKET 286
+V +E + E E EEEE +EE T
Sbjct: 367 DVEDEEEGESRSEGQEEEEEEEEEEEERSST 397
Score = 87 (30.6 bits), Expect = 0.79, Sum P(2) = 0.55
Identities = 29/116 (25%), Positives = 52/116 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE-----PKEETTKEAKEEEEA 169
E EV + + E+E + ++ EE E+ A ++ EE EE+ E++ E E
Sbjct: 421 ESEVEESEEGSDHESERKKASESEEEGEEEEADSLSEEEEGDSKSDAEESDAESETEGEG 480
Query: 170 PVETNEATEVTEEVKPEVEENPAPERT-EEEELKEETKETRIQHQWRNRSQRRTNQ 334
E +TE E E + + E + EEE+ E +E+ + Q + +N+
Sbjct: 481 AEEEQSSTEKEGESNEEEQSSTEKEESNEEEQSSTEKEESNEEEQSSTEKEGESNE 536
Score = 86 (30.3 bits), Expect = 3.0, P = 0.95
Identities = 30/122 (24%), Positives = 58/122 (47%), Frame = +2
Query: 2 HEVE--VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPV 175
HE E A ++ E EA +++ EE + A + + + ET E EEE++
Sbjct: 433 HESERKKASESEEEGEEEEADSLSEEEEGDSKSDAEE----SDAESETEGEGAEEEQSST 488
Query: 176 ETNEATEVTEEVKPEVEENPAPER--TEEEELKEETKETRIQHQWRNRSQRRTNQLKPLR 349
E + E+ E EE+ E+ TE+EE EE + + + N ++ + + +
Sbjct: 489 EKEGESNEEEQSSTEKEESNEEEQSSTEKEESNEEEQSSTEKEGESNEEEQSSTEKEESN 548
Query: 350 KPKQNN 367
+ +Q++
Sbjct: 549 EEEQSS 554
Score = 84 (29.6 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 28/110 (25%), Positives = 52/110 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE-EAPVET 181
E EV + + E+E + ++ EE E+ A ++ EE + ++ +A+E + E+ E
Sbjct: 421 ESEVEESEEGSDHESERKKASESEEEGEEEEADSLS--EEEEGDSKSDAEESDAESETEG 478
Query: 182 NEATEVTEEVKPEVEENPAPER-TEEEELKEETKETRIQHQWRNRSQRRTNQ 334
A E + E E N + TE+EE EE + + + + Q T +
Sbjct: 479 EGAEEEQSSTEKEGESNEEEQSSTEKEESNEEEQSSTEKEESNEEEQSSTEK 530
Score = 83 (29.2 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 28/93 (30%), Positives = 47/93 (50%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTP--EQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
V + Q P + +E E ++ K E T E + TEE +EE E +EEE+ E
Sbjct: 270 VSINIQPPASPSETEGSQ-DKSESVTANEEDEKESIQGTEEEEEE---EEEEEEDQKEEQ 325
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+ +V+EE + V ++ ++ +EE KE +T
Sbjct: 326 KTSADVSEEEEENVTQSS--DKASDEE-KEGDSDT 357
Score = 80 (28.2 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 28/98 (28%), Positives = 49/98 (50%), Frame = +2
Query: 11 EVAQQTPTTVTEN--EATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
+V+++ VT++ +A++ K +T + +Q +E + E+ E +EEEE E
Sbjct: 330 DVSEEEEENVTQSSDKASDEEKEGDSDTLHPEDESQSDVEDEEEGESRSEGQEEEEEEEE 389
Query: 179 TNEATEVTEEVKPEVEEN-PAPER-TEEEELKEETKET 286
E T E + E E+ ER EEEE + E +E+
Sbjct: 390 EEEERSSTAESESEDEKKGERKERDVEEEEGESEVEES 427
Score = 44 (15.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/42 (28%), Positives = 20/42 (47%), Frame = +1
Query: 244 ENRRRRIERGN*RNPNPAPVEEQKPEENKPAETVEE-TQTEQ 366
EN E N + EE++ EE+ E EE +++E+
Sbjct: 677 ENEEEEEEESNSEEDEESDGEEEEDEESDSEEDEEEESESEE 718
Score = 41 (14.4 bits), Expect = 0.025, Sum P(2) = 0.025
Identities = 13/42 (30%), Positives = 21/42 (50%), Frame = +1
Query: 265 ERGN*RNPNPAPVEEQKPEENKPAETVEETQTEQFLV*ERLE 390
E G R+ EE++ EE + + T E +++E ER E
Sbjct: 372 EEGESRSEGQEEEEEEEEEEEERSSTAE-SESEDEKKGERKE 412
Score = 39 (13.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 9/21 (42%), Positives = 14/21 (66%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+ EEN+ E EE+ +E+
Sbjct: 671 EEEDAEENEEEEE-EESNSEE 690
Score = 39 (13.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/20 (45%), Positives = 12/20 (60%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTE 363
EE+ EE++ E EET E
Sbjct: 588 EEESEEEDQKDEEEEETGEE 607
Score = 37 (13.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 7/21 (33%), Positives = 13/21 (61%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE++ E+ E+ EE Q ++
Sbjct: 579 EEEEESESNEEESEEEDQKDE 599
>gi|3037018|gb|AAC38975.1| (AF041330) NADH dehydrogenase subunit 5 [Bodo
saltans]
Length = 212
Frame -1 hits (HSPs): _______________________________________________
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Minus Strand HSPs:
Score = 115 (40.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 51/129 (39%), Positives = 64/129 (49%), Frame = -1
Query: 361 LFGFPQRFQLVCSPLA-SVPPLVLDSGFFSFLFQF----------FFFCSL-RCWVLF-- 224
LFGF + LV LA V VL+ F FLF F FF C L +C+VL
Sbjct: 10 LFGFYSK-DLVLIFLALCVFLFVLEFFFVVFLFVFITFWYNYFLLFFLCFLFKCFVLLDL 68
Query: 223 -YLRLHF-LCHFCCLISLNWGFFFLFCFFGGFFLWF-FGGSN--LGSWLFWGSFLNLGYL 59
+L F LC CL + FF LFC FFL+F F G L LF+ SF + +L
Sbjct: 69 LFLLFDFELCLLYCLFLMFMCFFLLFCCLD-FFLYFVFLGFFYFLMYCLFFFSFFDFVFL 127
Query: 58 GCFIFCHSCWCLLC 17
C +FC C+ + C
Sbjct: 128 -CVVFC--CFFVFC 138
Score = 103 (36.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 31/80 (38%), Positives = 40/80 (50%), Frame = -1
Query: 283 FFSFLFQFFFFCSLRCWVLF-YLRLHFLCH-FCCLISLNWGFFFLFCFFGGFFLWFFGGS 110
F F+F FF+ + C F + FLC FCC FF+FCF+G F +FF
Sbjct: 100 FLYFVFLGFFYFLMYCLFFFSFFDFVFLCVVFCC--------FFVFCFYGCLFFYFF--- 148
Query: 109 NLGS-WLFWGSFLNLGYLGCFIF 44
NL +L W FL CF+F
Sbjct: 149 NLDCVYLCWRFFLC-----CFVF 166
Score = 96 (33.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/70 (37%), Positives = 35/70 (50%), Frame = -1
Query: 283 FFSFLFQFFFFCSLRCWVLF-YLRLHFLCH-FCCLISLNWGFFFLFCFFGGFFLWFFGGS 110
F F+F FF+ + C F + FLC FCC FF+FCF+G F +FF
Sbjct: 100 FLYFVFLGFFYFLMYCLFFFSFFDFVFLCVVFCC--------FFVFCFYGCLFFYFFNLD 151
Query: 109 NLGSWLFWGSFL 74
+ +L W FL
Sbjct: 152 CV--YLCWRFFL 161
Score = 95 (33.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 38/80 (47%), Frame = -1
Query: 283 FFSFLFQFFFFCSLRCWVLF-YLRLHFLCHFCCLISLNWGFFFLFCFFGGFFLWFFGGSN 107
F F+F FF+ + C F + FLC C FF+FCF+G F +FF N
Sbjct: 100 FLYFVFLGFFYFLMYCLFFFSFFDFVFLCVVFCC-------FFVFCFYGCLFFYFF---N 149
Query: 106 LGS-WLFWGSFLNLGYLGCFIF 44
L +L W FL CF+F
Sbjct: 150 LDCVYLCWRFFLC-----CFVF 166
Score = 89 (31.3 bits), Expect = 0.0027, Sum P(2) = 0.0027
Identities = 29/79 (36%), Positives = 39/79 (49%), Frame = -1
Query: 283 FFSFLFQFFFF---CSLRCWVLFYLRLHFLCHFCCLISLNWGFFFLFCFFGGFFLWFFGG 113
F+ LF F+FF C CW F+L F+ F L + W +FCFF GFF+
Sbjct: 139 FYGCLF-FYFFNLDCVYLCW-RFFLCC-FVFFFMLLFFVFW-VVLVFCFFVGFFVVV--- 191
Query: 112 SNLGSWLFWGSFLNLGYLGCFI 47
L++ +L LGY C I
Sbjct: 192 ------LWYRLYLKLGYFFCLI 207
Score = 44 (15.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 14/21 (66%), Positives = 14/21 (66%), Frame = -2
Query: 366 LFCLGFLNGFSWFVLLWLLFL 304
LF L FL F FVLL LLFL
Sbjct: 53 LFFLCFL--FKCFVLLDLLFL 71
Score = 44 (15.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 7/22 (31%), Positives = 16/22 (72%), Frame = -2
Query: 339 FSWFVLLWLLFLHWCWIRVSLV 274
+++F+L +L FL C++ + L+
Sbjct: 48 YNYFLLFFLCFLFKCFVLLDLL 69
>gi|6587836|gb|AAF18525.1|AC006551_11 (AC006551) Unknown protein [Arabidopsis
thaliana]
Length = 683
Frame 2 hits (HSPs): _______________________
Frame 1 hits (HSPs): ___ ___ __
__________________________________________________
Database sequence: | | | | | | 683
0 150 300 450 600
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/98 (37%), Positives = 43/98 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIE-ETTPEQPATQVTTTEE--PKEETTKEAKEEEEA-P 172
E+ A T+ E T V ET P P T EE P T E K EE+ P
Sbjct: 173 EILAAPAPIVAETKKEETPVAPAPVETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVP 232
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETR 289
VET A VT E K E + P T+EEE K ET+
Sbjct: 233 VETTPAAPVTTETKEEEKAAPVTTETKEEE-KAAPGETK 270
Score = 89 (31.3 bits), Expect = 0.054, Sum P(2) = 0.053
Identities = 33/94 (35%), Positives = 41/94 (43%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE----PKE---ETTKEAKEEEEA 169
E ++ TE ++ E EE PAT T EE P ET KE A
Sbjct: 136 ETEEKKEEVKTEEKSLEAETKEEEKSAAPATVETKKEEILAAPAPIVAETKKEETPVAPA 195
Query: 170 PVETNEATEVTEEVKPEVEENPAPERTEEEELKEE 274
PVET A V E K E E PA T E +++E+
Sbjct: 196 PVETKPAAPVVAETKKE-EILPAAPVTTETKVEEK 229
Score = 87 (30.6 bits), Expect = 1.9, P = 0.85
Identities = 37/113 (32%), Positives = 47/113 (41%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEA-PVETNE 187
E+ P T TE + E ETTP P T T EE T E KEEE+A P ET +
Sbjct: 213 EILPAAPVT-TETKVEEKVVPVETTPAAPVTTETKEEEKAAPVTTETKEEEKAAPGETKK 271
Query: 188 ---AT-----------------EVTEEVKPEVEENPAPERTEEEELKEETKETR 289
AT VT K + EE PA E+ ++ +ET+
Sbjct: 272 EEKATASTQVKRASKFIKDIFVSVTTSEKKKEEEKPAVVTIEKAFAADQEEETK 325
Score = 82 (28.9 bits), Expect = 2.9, Sum P(2) = 0.95
Identities = 35/99 (35%), Positives = 45/99 (45%), Frame = +2
Query: 17 AQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAP--VETNE- 187
A P + E E K EET E+ +V T E+ E TKE +E+ AP VET +
Sbjct: 116 APPPPPAPVKEEKVEEKKTEET--EEKKEEVKTEEKSLEAETKE-EEKSAAPATVETKKE 172
Query: 188 ------ATEVTEEVKPEVEENPAPERTEEEE-LKEETKETRI 292
A V E K E PAP T+ + ETK+ I
Sbjct: 173 EILAAPAPIVAETKKEETPVAPAPVETKPAAPVVAETKKEEI 214
Score = 79 (27.8 bits), Expect = 7.4, Sum P(2) = 1.0
Identities = 25/82 (30%), Positives = 36/82 (43%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E + +++E E + T P KE K EE+ +T E E EEVK E
Sbjct: 92 EAEKNALAELKELVREALNKREFTAPPPPPAPVKEEKVEEK---KTEETEEKKEEVKTEE 148
Query: 224 EENPAPERTEEEELKEETKETR 289
+ A + EE+ T ET+
Sbjct: 149 KSLEAETKEEEKSAAPATVETK 170
Score = 79 (27.8 bits), Expect = 7.4, Sum P(2) = 1.0
Identities = 26/87 (29%), Positives = 40/87 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATE-VTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E++ A++ + E + K E T P P V EE EE E EE++ V+T
Sbjct: 89 ELQEAEKNALAELKELVREALNKREFTAPPPPPAPVK--EEKVEEKKTEETEEKKEEVKT 146
Query: 182 NEATEVTEEVKPEVEENPAPERTEEEEL 265
E + E + E PA T++EE+
Sbjct: 147 EEKSLEAETKEEEKSAAPATVETKKEEI 174
Score = 70 (24.6 bits), Expect = 0.10, Sum P(2) = 0.098
Identities = 30/92 (32%), Positives = 39/92 (42%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE---PKEETTKEAKEEEEAPVETN 184
V ++TP V E E T+ P AT+ E P+ E T KEEE V T
Sbjct: 16 VKEETPAPVKEVEVPVTTEKAVAAPAPEATEEKVVSEVAVPETEVTA-VKEEE---VATG 71
Query: 185 EATEVTEEVKPE---VEENPAPERTEEEELKEETKE 283
+ +E K E E E+ ELKE +E
Sbjct: 72 KEILQSESFKEEGYLASELQEAEKNALAELKELVRE 107
Score = 69 (24.3 bits), Expect = 0.10, Sum P(2) = 0.098
Identities = 16/30 (53%), Positives = 20/30 (66%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVE---ETQTEQ 366
P PAPV+E+K EE K ET E E +TE+
Sbjct: 119 PPPAPVKEEKVEEKKTEETEEKKEEVKTEE 148
Score = 46 (16.2 bits), Expect = 0.054, Sum P(2) = 0.053
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTEQ 366
APV + EE K A ET+ E+
Sbjct: 239 APVTTETKEEEKAAPVTTETKEEE 262
Score = 39 (13.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/16 (56%), Positives = 12/16 (75%), Frame = +1
Query: 307 EQKPEENKPAE-TVEE 351
E+K EE KPA T+E+
Sbjct: 299 EKKKEEEKPAVVTIEK 314
Score = 38 (13.4 bits), Expect = 0.35, Sum P(2) = 0.29
Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +1
Query: 295 APVEEQKPEENK--PAETVEE 351
APV + EE K P ET +E
Sbjct: 252 APVTTETKEEEKAAPGETKKE 272
>gi|1170517|sp|P45386|IGA4_HAEIN IMMUNOGLOBULIN A1 PROTEASE PRECURSOR (IGA1
PROTEASE) >gi|148911|gb|AAA24968.1| (M87491) IgA1 protease
[Haemophilus influenzae]
Length = 1849
Frame 2 hits (HSPs): _____________
Frame 1 hits (HSPs): ____ __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 1849
0 500 1000 1500
__________________
Annotated Domains:
Entrez active site: PROBABLE. 299
PRINTS IGASERPTASE1: IgA-specific endopeptidase 33..53
PRINTS IGASERPTASE2: IgA-specific endopeptidase 165..185
PRINTS IGASERPTASE3: IgA-specific endopeptidase 297..315
PRINTS IGASERPTASE4: IgA-specific endopeptidase 653..670
PRINTS IGASERPTASE5: IgA-specific endopeptidase 677..699
PRINTS IGASERPTASE6: IgA-specific endopeptidase 700..722
PRINTS IGASERPTASE7: IgA-specific endopeptidase 742..756
PRINTS IGASERPTASE8: IgA-specific endopeptidase 798..817
PRINTS IGASERPTASE9: IgA-specific endopeptidase 975..989
PRODOM PD002581: IGA0(2) IGA2(2) IGA1(2) 7..571
PRODOM PD014536: 573..632
PRODOM PD002581: IGA0(2) IGA2(2) IGA1(2) 650..793
PRODOM PD008859: 795..839
PRODOM PD002475: PERT(3) 853..992
PRODOM PD013961: 994..1033
PRODOM PD000651: VL2(74) O18758(34) MUC2(10) 1055..1288
PRODOM PD127829: IGA4_HAEIN 1290..1351
PRODOM PD014026: IGA0(1) IGA2(1) IGA4(1) 1353..1469
PRODOM PD127830: IGA4_HAEIN 1486..1558
PRODOM PD007723: 1560..1848
__________________
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 29/92 (31%), Positives = 50/92 (54%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE--PKEETTK-EAKEEEEAPVETNEA 190
++T T T++E TE + E PE+ +Q T + KEE K E +E ++AP T++
Sbjct: 1155 EETQTAETKSEPTESVTVSENQPEKTVSQSTEDKVVVEKEEKAKVETEETQKAPQVTSK- 1213
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKETRI 292
E ++ +P EE P EE + ++T+ T +
Sbjct: 1214 -EPPKQAEPAPEEVPTDTNAEEAQALQQTQPTTV 1246
Score = 112 (39.4 bits), Expect = 0.00050, P = 0.00050
Identities = 38/132 (28%), Positives = 58/132 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E A T T + AT+ E+ P + +V E P +E AK E+EA T
Sbjct: 1067 ETNTANSTETAPKSDTATQTENPNSESVPSETTEKVA--ENPPQENETVAKNEQEATEPT 1124
Query: 182 NEATEVTEEVKPEVEENPAP-ERTEEEELKEETKETRIQHQWRNRSQRRTNQL-KPLRKP 355
+ EV +E +P VE N E T+ E EET+ + + NQ K + +
Sbjct: 1125 PQNGEVAKEDQPTVEANTQTNEATQSEGKTEETQTAETKSEPTESVTVSENQPEKTVSQS 1184
Query: 356 KQNNFLFEKDWKLK 397
++ + EK+ K K
Sbjct: 1185 TEDKVVVEKEEKAK 1198
Score = 107 (37.7 bits), Expect = 0.0017, P = 0.0017
Identities = 36/123 (29%), Positives = 61/123 (49%), Frame = +2
Query: 17 AQQTPTTV-TENEATEVTKIEETTPEQPATQVTTT--EEPKEETTKEAKEEEEAPVETNE 187
A+ P V T+ A E +++T P A TT+ +P EET + +++ PV T
Sbjct: 1219 AEPAPEEVPTDTNAEEAQALQQTQPTTVAAAETTSPNSKPAEETQQPSEKTNAEPV-TPV 1277
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKE-ETKETRIQHQWRNRSQRRTNQLKPLRKPKQN 364
+E T E EE E+ + +E+ + ++E+ Q Q + Q +T KP +P +
Sbjct: 1278 VSENTATQPTETEETAKVEKEKTQEVPQVASQESPKQEQPAAKPQAQT---KPQAEPARE 1334
Query: 365 NFLFEKD 385
N L K+
Sbjct: 1335 NVLTTKN 1341
Score = 105 (37.0 bits), Expect = 0.0028, P = 0.0028
Identities = 37/114 (32%), Positives = 54/114 (47%), Frame = +2
Query: 17 AQQTPTTV-TENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
A+ P V T+ A E +++T P A TT+ P +K A+E ++ +TN
Sbjct: 1219 AEPAPEEVPTDTNAEEAQALQQTQPTTVAAAETTS--PN---SKPAEETQQPSEKTN--- 1270
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E V P V EN A + TE EE + KE + Q + SQ Q +P KP+
Sbjct: 1271 --AEPVTPVVSENTATQPTETEETAKVEKE-KTQEVPQVASQESPKQEQPAAKPQ 1322
Score = 99 (34.8 bits), Expect = 0.0040, Sum P(2) = 0.0040
Identities = 29/92 (31%), Positives = 40/92 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E A T T + AT+ + T+ E P +E AK E+EA T
Sbjct: 1067 ETNTANSTETAPKSDTATQTENPNSESVPSETTE-KVAENPPQENETVAKNEQEATEPTP 1125
Query: 185 EATEVTEEVKPEVEENPAP-ERTEEEELKEETK 280
+ EV +E +P VE N E T+ E EET+
Sbjct: 1126 QNGEVAKEDQPTVEANTQTNEATQSEGKTEETQ 1158
Score = 97 (34.1 bits), Expect = 0.22, P = 0.20
Identities = 43/131 (32%), Positives = 61/131 (46%), Frame = +2
Query: 11 EVAQQTPT---TVTENE--ATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEA 169
+VA+ P TV +NE ATE T E +QP + T + E T E K EE
Sbjct: 1101 KVAENPPQENETVAKNEQEATEPTPQNGEVAKEDQPTVEANT--QTNEATQSEGKTEETQ 1158
Query: 170 PVET-NEATE-VT-EEVKPEVEENPAPERT----EEEELKEETKETRIQHQWRNRSQRRT 328
ET +E TE VT E +PE + + E +EE+ K ET+ET+ Q ++ +
Sbjct: 1159 TAETKSEPTESVTVSENQPEKTVSQSTEDKVVVEKEEKAKVETEETQKAPQVTSKEPPKQ 1218
Query: 329 NQLKPLRKPKQNN 367
+ P P N
Sbjct: 1219 AEPAPEEVPTDTN 1231
Score = 96 (33.8 bits), Expect = 0.30, P = 0.26
Identities = 40/124 (32%), Positives = 56/124 (45%), Frame = +2
Query: 20 QQTPTTV-TENEATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET-NE 187
Q+ T E EATE T E +QP + T + E T E K EE ET +E
Sbjct: 1108 QENETVAKNEQEATEPTPQNGEVAKEDQPTVEANT--QTNEATQSEGKTEETQTAETKSE 1165
Query: 188 ATE-VT-EEVKPEVEENPAPERT----EEEELKEETKETRIQHQWRNRSQRRTNQLKPLR 349
TE VT E +PE + + E +EE+ K ET+ET+ Q ++ + + P
Sbjct: 1166 PTESVTVSENQPEKTVSQSTEDKVVVEKEEKAKVETEETQKAPQVTSKEPPKQAEPAPEE 1225
Query: 350 KPKQNN 367
P N
Sbjct: 1226 VPTDTN 1231
Score = 90 (31.7 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 31/97 (31%), Positives = 48/97 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E V+Q T V E E K+E T Q A QVT+ E PK+ + A EE P +TN
Sbjct: 1178 EKTVSQSTEDKVVV-EKEEKAKVE-TEETQKAPQVTSKEPPKQ--AEPAPEE--VPTDTN 1231
Query: 185 -EATEVTEEVKPEV---EENPAPERTEEEELKEETKETRIQ 295
E + ++ +P E +P EE ++ +++T +
Sbjct: 1232 AEEAQALQQTQPTTVAAAETTSPNSKPAEETQQPSEKTNAE 1272
Score = 89 (31.3 bits), Expect = 3.1, P = 0.95
Identities = 27/112 (24%), Positives = 48/112 (42%), Frame = +2
Query: 17 AQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE-EAPVETNEAT 193
AQ P T E V+ + P+ + +TE+P +ET+ ++ E + T AT
Sbjct: 1376 AQAKPQTEPARE--NVSTVNTKEPQSQTSATVSTEQPAKETSSNVEQPAPENSINTGSAT 1433
Query: 194 EVTEEV----KPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKP 343
+TE KP++E +R E + ++S+RR + +P
Sbjct: 1434 TMTETAEKSDKPQMETVTENDRQPEANTVADNSVANNSESSESKSRRRRSVSQP 1487
Score = 88 (31.0 bits), Expect = 4.1, P = 0.98
Identities = 35/118 (29%), Positives = 49/118 (41%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
V++ T T TE E E K+E E T E P QV + E PK+E AK + + + A
Sbjct: 1278 VSENTATQPTETE--ETAKVEKEKTQEVP--QVASQESPKQEQPA-AKPQAQTKPQAEPA 1332
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNN 367
E K E P + + T ET + + Q Q KP +P + N
Sbjct: 1333 RENVLTTKNVGEPQPQAQPQTQSTAVPTTGETAANSKPAAKPQA---QAKPQTEPAREN 1388
Score = 83 (29.2 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 31/112 (27%), Positives = 46/112 (41%), Frame = +2
Query: 5 EVEVAQQTPTT---VTENEATEVTKIEETTPEQPATQVTT-TEEPKEETTKEAKEEE--E 166
E +A + P T T A E T +T P + T TE P E+ E+ E
Sbjct: 1045 ESAIASEQPETRPAETAQPAMEETNTANSTETAPKSDTATQTENPNSESVPSETTEKVAE 1104
Query: 167 APVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
P + NE E+ E E P P+ E + + T E Q +S+ +T +
Sbjct: 1105 NPPQENETVAKNEQ---EATE-PTPQNGEVAKEDQPTVEANTQTNEATQSEGKTEE 1156
Score = 49 (17.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = +1
Query: 283 NPNPAPVEE-QKPEENKPAETVEETQTE 363
+PN P EE Q+P E AE V +E
Sbjct: 1253 SPNSKPAEETQQPSEKTNAEPVTPVVSE 1280
Score = 46 (16.2 bits), Expect = 0.0080, Sum P(2) = 0.0080
Identities = 12/31 (38%), Positives = 18/31 (58%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTEQFLV*ERLE 390
P E EN+P +TV ++ TE +V E+ E
Sbjct: 1166 PTESVTVSENQPEKTVSQS-TEDKVVVEKEE 1195
Score = 36 (12.7 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 9/30 (30%), Positives = 13/30 (43%), Frame = +1
Query: 283 NPNPA--PVEEQKPEENKPAETVEETQTEQ 366
N PA P + KP+ E V T++
Sbjct: 1367 NSKPAAKPQAQAKPQTEPARENVSTVNTKE 1396
>gi|282110|pir||C41859 IgA-specific metalloendopeptidase (EC 3.4.24.13) type 1
precursor - Haemophilus influenzae (strain HK613)
>gi|248812|gb|AAB22073.1| type 1 immunoglobulin A1 protease, IgA1
protease [Haemophilus influenzae, strain HK61, Peptide, 1849 aa]
Length = 1849
Frame 2 hits (HSPs): _____________
Frame 1 hits (HSPs): ____ __
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 1849
0 500 1000 1500
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 1147..1154
__________________
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 29/92 (31%), Positives = 50/92 (54%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE--PKEETTK-EAKEEEEAPVETNEA 190
++T T T++E TE + E PE+ +Q T + KEE K E +E ++AP T++
Sbjct: 1155 EETQTAETKSEPTESVTVSENQPEKTVSQSTEDKVVVEKEEKAKVETEETQKAPQVTSK- 1213
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKETRI 292
E ++ +P EE P EE + ++T+ T +
Sbjct: 1214 -EPPKQAEPAPEEVPTDTNAEEAQALQQTQPTTV 1246
Score = 112 (39.4 bits), Expect = 0.00050, P = 0.00050
Identities = 38/132 (28%), Positives = 58/132 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
E A T T + AT+ E+ P + +V E P +E AK E+EA T
Sbjct: 1067 ETNTANSTETAPKSDTATQTENPNSESVPSETTEKVA--ENPPQENETVAKNEQEATEPT 1124
Query: 182 NEATEVTEEVKPEVEENPAP-ERTEEEELKEETKETRIQHQWRNRSQRRTNQL-KPLRKP 355
+ EV +E +P VE N E T+ E EET+ + + NQ K + +
Sbjct: 1125 PQNGEVAKEDQPTVEANTQTNEATQSEGKTEETQTAETKSEPTESVTVSENQPEKTVSQS 1184
Query: 356 KQNNFLFEKDWKLK 397
++ + EK+ K K
Sbjct: 1185 TEDKVVVEKEEKAK 1198
Score = 107 (37.7 bits), Expect = 0.0017, P = 0.0017
Identities = 36/123 (29%), Positives = 61/123 (49%), Frame = +2
Query: 17 AQQTPTTV-TENEATEVTKIEETTPEQPATQVTTT--EEPKEETTKEAKEEEEAPVETNE 187
A+ P V T+ A E +++T P A TT+ +P EET + +++ PV T
Sbjct: 1219 AEPAPEEVPTDTNAEEAQALQQTQPTTVAAAETTSPNSKPAEETQQPSEKTNAEPV-TPV 1277
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKE-ETKETRIQHQWRNRSQRRTNQLKPLRKPKQN 364
+E T E EE E+ + +E+ + ++E+ Q Q + Q +T KP +P +
Sbjct: 1278 VSENTATQPTETEETAKVEKEKTQEVPQVASQESPKQEQPAAKPQAQT---KPQAEPARE 1334
Query: 365 NFLFEKD 385
N L K+
Sbjct: 1335 NVLTTKN 1341
Score = 105 (37.0 bits), Expect = 0.0028, P = 0.0028
Identities = 37/114 (32%), Positives = 54/114 (47%), Frame = +2
Query: 17 AQQTPTTV-TENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
A+ P V T+ A E +++T P A TT+ P +K A+E ++ +TN
Sbjct: 1219 AEPAPEEVPTDTNAEEAQALQQTQPTTVAAAETTS--PN---SKPAEETQQPSEKTN--- 1270
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E V P V EN A + TE EE + KE + Q + SQ Q +P KP+
Sbjct: 1271 --AEPVTPVVSENTATQPTETEETAKVEKE-KTQEVPQVASQESPKQEQPAAKPQ 1322
Score = 99 (34.8 bits), Expect = 0.0040, Sum P(2) = 0.0040
Identities = 29/92 (31%), Positives = 40/92 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E A T T + AT+ + T+ E P +E AK E+EA T
Sbjct: 1067 ETNTANSTETAPKSDTATQTENPNSESVPSETTE-KVAENPPQENETVAKNEQEATEPTP 1125
Query: 185 EATEVTEEVKPEVEENPAP-ERTEEEELKEETK 280
+ EV +E +P VE N E T+ E EET+
Sbjct: 1126 QNGEVAKEDQPTVEANTQTNEATQSEGKTEETQ 1158
Score = 97 (34.1 bits), Expect = 0.22, P = 0.20
Identities = 43/131 (32%), Positives = 61/131 (46%), Frame = +2
Query: 11 EVAQQTPT---TVTENE--ATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEA 169
+VA+ P TV +NE ATE T E +QP + T + E T E K EE
Sbjct: 1101 KVAENPPQENETVAKNEQEATEPTPQNGEVAKEDQPTVEANT--QTNEATQSEGKTEETQ 1158
Query: 170 PVET-NEATE-VT-EEVKPEVEENPAPERT----EEEELKEETKETRIQHQWRNRSQRRT 328
ET +E TE VT E +PE + + E +EE+ K ET+ET+ Q ++ +
Sbjct: 1159 TAETKSEPTESVTVSENQPEKTVSQSTEDKVVVEKEEKAKVETEETQKAPQVTSKEPPKQ 1218
Query: 329 NQLKPLRKPKQNN 367
+ P P N
Sbjct: 1219 AEPAPEEVPTDTN 1231
Score = 96 (33.8 bits), Expect = 0.30, P = 0.26
Identities = 40/124 (32%), Positives = 56/124 (45%), Frame = +2
Query: 20 QQTPTTV-TENEATEVTKI--EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET-NE 187
Q+ T E EATE T E +QP + T + E T E K EE ET +E
Sbjct: 1108 QENETVAKNEQEATEPTPQNGEVAKEDQPTVEANT--QTNEATQSEGKTEETQTAETKSE 1165
Query: 188 ATE-VT-EEVKPEVEENPAPERT----EEEELKEETKETRIQHQWRNRSQRRTNQLKPLR 349
TE VT E +PE + + E +EE+ K ET+ET+ Q ++ + + P
Sbjct: 1166 PTESVTVSENQPEKTVSQSTEDKVVVEKEEKAKVETEETQKAPQVTSKEPPKQAEPAPEE 1225
Query: 350 KPKQNN 367
P N
Sbjct: 1226 VPTDTN 1231
Score = 90 (31.7 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 31/97 (31%), Positives = 48/97 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E V+Q T V E E K+E T Q A QVT+ E PK+ + A EE P +TN
Sbjct: 1178 EKTVSQSTEDKVVV-EKEEKAKVE-TEETQKAPQVTSKEPPKQ--AEPAPEE--VPTDTN 1231
Query: 185 -EATEVTEEVKPEV---EENPAPERTEEEELKEETKETRIQ 295
E + ++ +P E +P EE ++ +++T +
Sbjct: 1232 AEEAQALQQTQPTTVAAAETTSPNSKPAEETQQPSEKTNAE 1272
Score = 89 (31.3 bits), Expect = 3.1, P = 0.95
Identities = 27/112 (24%), Positives = 48/112 (42%), Frame = +2
Query: 17 AQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE-EAPVETNEAT 193
AQ P T E V+ + P+ + +TE+P +ET+ ++ E + T AT
Sbjct: 1376 AQAKPQTEPARE--NVSTVNTKEPQSQTSATVSTEQPAKETSSNVEQPAPENSINTGSAT 1433
Query: 194 EVTEEV----KPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKP 343
+TE KP++E +R E + ++S+RR + +P
Sbjct: 1434 TMTETAEKSDKPQMETVTENDRQPEANTVADNSVANNSESSESKSRRRRSVSQP 1487
Score = 88 (31.0 bits), Expect = 4.1, P = 0.98
Identities = 35/118 (29%), Positives = 49/118 (41%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
V++ T T TE E E K+E E T E P QV + E PK+E AK + + + A
Sbjct: 1278 VSENTATQPTETE--ETAKVEKEKTQEVP--QVASQESPKQEQPA-AKPQAQTKPQAEPA 1332
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNN 367
E K E P + + T ET + + Q Q KP +P + N
Sbjct: 1333 RENVLTTKNVGEPQPQAQPQTQSTAVPTTGETAANSKPAAKPQA---QAKPQTEPAREN 1388
Score = 83 (29.2 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 31/112 (27%), Positives = 46/112 (41%), Frame = +2
Query: 5 EVEVAQQTPTT---VTENEATEVTKIEETTPEQPATQVTT-TEEPKEETTKEAKEEE--E 166
E +A + P T T A E T +T P + T TE P E+ E+ E
Sbjct: 1045 ESAIASEQPETRPAETAQPAMEETNTANSTETAPKSDTATQTENPNSESVPSETTEKVAE 1104
Query: 167 APVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
P + NE E+ E E P P+ E + + T E Q +S+ +T +
Sbjct: 1105 NPPQENETVAKNEQ---EATE-PTPQNGEVAKEDQPTVEANTQTNEATQSEGKTEE 1156
Score = 49 (17.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = +1
Query: 283 NPNPAPVEE-QKPEENKPAETVEETQTE 363
+PN P EE Q+P E AE V +E
Sbjct: 1253 SPNSKPAEETQQPSEKTNAEPVTPVVSE 1280
Score = 46 (16.2 bits), Expect = 0.0080, Sum P(2) = 0.0080
Identities = 12/31 (38%), Positives = 18/31 (58%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTEQFLV*ERLE 390
P E EN+P +TV ++ TE +V E+ E
Sbjct: 1166 PTESVTVSENQPEKTVSQS-TEDKVVVEKEE 1195
Score = 36 (12.7 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 9/30 (30%), Positives = 13/30 (43%), Frame = +1
Query: 283 NPNPA--PVEEQKPEENKPAETVEETQTEQ 366
N PA P + KP+ E V T++
Sbjct: 1367 NSKPAAKPQAQAKPQTEPARENVSTVNTKE 1396
>gi|2292986|emb|CAA04133.1| (AJ000496) cyclic nucleotide-gated channel beta
subunit [Rattus norvegicus]
Length = 1339
Frame 2 hits (HSPs): ___ ___________
Frame 1 hits (HSPs): __ ____ _
__________________________________________________
Database sequence: | | | | 1339
0 500 1000
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 34/109 (31%), Positives = 53/109 (48%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
VE+ ++ P + E + E + EE E+ + EE KEE +E +EEE+ + E
Sbjct: 357 VEMPRELPQ-IQEQQEEENEEKEEEEEEKEEKEEKEEEEEKEE--EEKREEEKKKEKEEE 413
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
E EE E EE E EEEE KEE KE + + + + ++ +
Sbjct: 414 KKEKEEEENGEEEEKEEKEEKEEEEGKEE-KEEKEEKEEKEEEEKEEKE 461
Score = 112 (39.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 29/80 (36%), Positives = 40/80 (50%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E E K +E E+ + E +E+ KE KEEEE E E E E+ + E
Sbjct: 398 EEEKREEEKKKEKEEEKKEKEEEENGEEEEKEEKEEKEEEEGKEEKEEKEEKEEKEEEEK 457
Query: 224 EENPAPERTEEEELKEETKE 283
EE E+ E+EE +EE +E
Sbjct: 458 EEKEEEEKEEKEEEEEEEEE 477
Score = 112 (39.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 33/99 (33%), Positives = 46/99 (46%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPK-EETTKEAKEEEEAPVETNEATEVTE-EVKP 217
ENE E + E+ E+ + EE K EE K+ KEEE+ E E E E E K
Sbjct: 373 ENEEKEEEEEEKEEKEEKEEEEEKEEEEKREEEKKKEKEEEKKEKEEEENGEEEEKEEKE 432
Query: 218 EVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
E EE E EE+E KEE +E + + + + +
Sbjct: 433 EKEEEEGKEEKEEKEEKEEKEEEEKEEKEEEEKEEKEEE 471
Score = 112 (39.4 bits), Expect = 0.00035, P = 0.00035
Identities = 34/128 (26%), Positives = 61/128 (47%), Frame = +2
Query: 20 QQTPTT-VTENEATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
Q+T + E+E+ + ++ P+ Q + E+ +EE KE KEE+E E E
Sbjct: 341 QETELAPIYEDESEAMVEMPRELPQIQEQQEEENEEKEEEEEEKEEKEEKEEEEEKEEEE 400
Query: 194 EVTEEVKPEVEENPAPERTEE--EELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNN 367
+ EE K E EE + EE EE ++E KE + + + + + + + + + K+
Sbjct: 401 KREEEKKKEKEEEKKEKEEEENGEEEEKEEKEEKEEEEGKEEKEEKEEKEEKEEEEKEEK 460
Query: 368 FLFEKDWK 391
EK+ K
Sbjct: 461 EEEEKEEK 468
Score = 111 (39.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 32/83 (38%), Positives = 40/83 (48%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTE---EVK 214
E E E K +E E+ + E +E+ KE KEEEE E E E E E K
Sbjct: 398 EEEKREEEKKKEKEEEKKEKEEEENGEEEEKEEKEEKEEEEGKEEKEEKEEKEEKEEEEK 457
Query: 215 PEVEENPAPERTEEEELKEETKE 283
E EE E+ EEEE +EE +E
Sbjct: 458 EEKEEEEKEEKEEEEEEEEEEEE 480
Score = 105 (37.0 bits), Expect = 0.0020, P = 0.0020
Identities = 30/127 (23%), Positives = 60/127 (47%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
+ Q+ ++ E E + + E E E P ++ +E +EE +E +EEEE E E
Sbjct: 331 DTQQEDGASLQETELAPIYEDESEAMVEMPR-ELPQIQEQQEEENEEKEEEEEEKEEKEE 389
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNN 367
E E+ + E E + EEE+ ++E +E + + + ++ + K ++ K+
Sbjct: 390 KEEEEEKEEEEKREEEKKKEKEEEKKEKEEEENGEEEEKEEKEEKEEEEGKEEKEEKEEK 449
Query: 368 FLFEKDWK 391
E++ K
Sbjct: 450 EEKEEEEK 457
Score = 104 (36.6 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 31/99 (31%), Positives = 46/99 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE KE+ +E EEEE +
Sbjct: 376 EKEEEEEEKEEKEEKEEEEEKEEEEKREEEKKKE--KEEEKKEKEEEENGEEEEKEEKEE 433
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
+ E +E K E EE E E+EE +EE KE + + +
Sbjct: 434 KEEEEGKEEKEEKEEKEEKEEEEKEEKEEEEKEEKEEEE 472
Score = 95 (33.4 bits), Expect = 0.031, Sum P(2) = 0.030
Identities = 30/73 (41%), Positives = 35/73 (47%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT--EVTEEVKP 217
E E + K EE E+ + EE +EE KE KEE+E E E E EE K
Sbjct: 409 EKEEEKKEKEEEENGEEEEKE--EKEEKEEEEGKEEKEEKEEKEEKEEEEKEEKEEEEKE 466
Query: 218 EVEENPAPERTEEEE 262
E EE E EEEE
Sbjct: 467 EKEEEEEEEEEEEEE 481
Score = 94 (33.1 bits), Expect = 0.050, Sum P(2) = 0.049
Identities = 30/112 (26%), Positives = 46/112 (41%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKE---ETTKEAKEEEEAPVE 178
VE A+ + E T+ E+ Q E+ E E +E + +E E
Sbjct: 313 VEQAEHDLVLEDVDSCWEDTQQEDGASLQETELAPIYEDESEAMVEMPRELPQIQEQQEE 372
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
NE E EE K E EE E EEEE +EE K+ + + + + + +
Sbjct: 373 ENEEKEEEEEEKEEKEEKEEEEEKEEEEKREEEKKKEKEEEKKEKEEEENGE 424
Score = 90 (31.7 bits), Expect = 1.6, P = 0.80
Identities = 34/119 (28%), Positives = 52/119 (43%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVT------- 202
E E E K E+ E+ + EE +EE +E +EEEE P+ ++ V
Sbjct: 442 EKEEKE-EKEEKEEEEKEEKEEEEKEEKEEEEEEEEEEEEEEPIVLLDSCLVVQADVDQC 500
Query: 203 --EEVKPE---VEENPAPERTEEEELKEETKETRIQHQWRNRSQRR-----TNQLKPLRK 352
E +PE ++E P E +EEE KEE +E + + ++ TN P K
Sbjct: 501 QLERAQPETASIQELPEEEEEKEEEKKEEEEEKEEEEEKEEEEEKEEEGEATNSTVPATK 560
Score = 86 (30.3 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 25/69 (36%), Positives = 33/69 (47%), Frame = +2
Query: 68 KIEETTPEQPATQ-VTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPE 244
++E PE + Q + EE KEE KE +EE+E E E E EE E + P
Sbjct: 501 QLERAQPETASIQELPEEEEEKEEEKKEEEEEKEEEEEKEEEEEKEEE--GEATNSTVPA 558
Query: 245 RTEEEELKEE 274
E EL+ E
Sbjct: 559 TKEHPELQVE 568
Score = 85 (29.9 bits), Expect = 7.1, P = 1.0
Identities = 34/129 (26%), Positives = 55/129 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEAT--EVTKIEETTPEQPATQVTTTE-EPKEETTKEAKEEEEAPV 175
+V+ P E++ +V E T ++ + TE P E EA E P
Sbjct: 304 DVQTISILPVEQAEHDLVLEDVDSCWEDTQQEDGASLQETELAPIYEDESEAMVE--MPR 361
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
E + E EE E EE E EE+E KEE +E + + ++ + K ++
Sbjct: 362 ELPQIQEQQEEENEEKEEEE--EEKEEKEEKEEEEEKEEEEKREEEKKKEKEEEKKEKEE 419
Query: 356 KQNNFLFEKDWK 391
++N EK+ K
Sbjct: 420 EENGEEEEKEEK 431
Score = 84 (29.6 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 28/80 (35%), Positives = 38/80 (47%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E I+E E+ + EE +E+ +E KEEEE E EAT T P
Sbjct: 503 ERAQPETASIQELPEEEEEKEEEKKEEEEEKEEEEEKEEEEEKEEEGEATNSTV---PAT 559
Query: 224 EENPA--PERTEEEE---LKEET 277
+E+P E T+ E + EET
Sbjct: 560 KEHPELQVEDTDAEAGPLIPEET 582
Score = 77 (27.1 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 19/63 (30%), Positives = 25/63 (39%), Frame = +2
Query: 71 IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERT 250
++ P+ P T T E + E+K E E E E +PE E PAPE
Sbjct: 5 VQRVLPQPPGTPQKTEEGAGPQPETESKPEANPQPEPEVQPEPEPEPEPEPEPEPAPEEA 64
Query: 251 EEE 259
E
Sbjct: 65 APE 67
Score = 48 (16.9 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 12/22 (54%), Positives = 12/22 (54%), Frame = +1
Query: 274 N*RNPNPAPVEEQKPEENKPAE 339
N PNP PVE PEE AE
Sbjct: 234 NPSQPNPGPVE---PEEEPAAE 252
Score = 45 (15.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTEQ 366
P EE++ EE K E E+ + E+
Sbjct: 516 PEEEEEKEEEKKEEEEEKEEEEE 538
Score = 44 (15.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/21 (42%), Positives = 13/21 (61%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+K EE + E EE + E+
Sbjct: 523 EEEKKEEEEEKEEEEEKEEEE 543
Score = 43 (15.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 9/21 (42%), Positives = 13/21 (61%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE+K EE K E +E + E+
Sbjct: 519 EEEKEEEKKEEEEEKEEEEEK 539
Score = 42 (14.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 9/24 (37%), Positives = 15/24 (62%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQFLV 375
EE+K E+ + E EE + E+ +V
Sbjct: 462 EEEKEEKEEEEEEEEEEEEEEPIV 485
Score = 40 (14.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/20 (40%), Positives = 11/20 (55%), Frame = +1
Query: 265 ERGN*RNPNPAPVEEQKPEE 324
E G+ PAP E +P+E
Sbjct: 1260 EEGSGATDQPAPQEPSEPKE 1279
Score = 38 (13.4 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 8/20 (40%), Positives = 12/20 (60%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTE 363
EE++ EE + E EE + E
Sbjct: 529 EEEEKEEEEEKEEEEEKEEE 548
Score = 36 (12.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 8/19 (42%), Positives = 11/19 (57%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQT 360
EE+K EE + E E T +
Sbjct: 536 EEEKEEEEEKEEEGEATNS 554
>gi|7299453|gb|AAF54642.1| (AE003691) CG14703 gene product [Drosophila
melanogaster]
Length = 399
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 399
0 150 300
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 39/128 (30%), Positives = 66/128 (51%), Frame = +2
Query: 17 AQQTPTTVTENEATE-VTKIEETT-PEQPATQVTTTEEPKEETTK-EAKEEEEAPVETNE 187
A++TP V +A E + K+ T P++P + ++ KE T E+ EEE E+ E
Sbjct: 112 AKKTPEPVNTKKAPEPIKKVAPTVGPKKPVATTSALKKKKEPTPPPESSSEEE---ESEE 168
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEE--TKETRIQHQWRNRSQRRTNQLKPLRKPKQ 361
E EE + E EE+ +EEEE +EE T + ++ + +Q R + +KP+
Sbjct: 169 EEETEEETESEEEESEEESESEEEESEEEDTTVDEKVPEHVKKAAQLRPTTVN--KKPEP 226
Query: 362 NNFLFEKDWKLKP 400
+ L ++ KP
Sbjct: 227 ESELTQRFTMEKP 239
Score = 102 (35.9 bits), Expect = 0.0036, P = 0.0035
Identities = 36/133 (27%), Positives = 58/133 (43%), Frame = +2
Query: 41 TENEATEVTKIEETT-PEQPATQVTTTEEPKEETTK-EAKEEEEAPVETNEATEVTEEVK 214
T+ + K+ T P++P + ++ KE T E+ EEE E E E TE +
Sbjct: 121 TKKAPEPIKKVAPTVGPKKPVATTSALKKKKEPTPPPESSSEEEESEEEEETEEETESEE 180
Query: 215 PEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRR--TNQLKP-----------LRKP 355
E EE E E EE ++ T + ++ + +Q R T KP + KP
Sbjct: 181 EESEEESESEEEESEE-EDTTVDEKVPEHVKKAAQLRPTTVNKKPEPESELTQRFTMEKP 239
Query: 356 KQNNFLFEKDWKLK 397
K + + ++D LK
Sbjct: 240 KLRSVVVKRDKSLK 253
Score = 85 (29.9 bits), Expect = 1.7, P = 0.81
Identities = 30/104 (28%), Positives = 49/104 (47%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPE--------QPATQVTTTEEPKEE--TTKEAKEE 160
E A++T V ++ T + TPE +P +V T PK+ TT K++
Sbjct: 91 EPAKKTIEPVKKSSLATSTTAAKKTPEPVNTKKAPEPIKKVAPTVGPKKPVATTSALKKK 150
Query: 161 EEA--PVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
+E P E++ E +EE + EE + E EEE + E +E+
Sbjct: 151 KEPTPPPESSSEEEESEEEEETEEETESEEEESEEESESEEEES 194
Score = 79 (27.8 bits), Expect = 9.5, P = 1.0
Identities = 33/120 (27%), Positives = 52/120 (43%), Frame = +2
Query: 17 AQQTPTTVTENEAT-EVTK--IEETTPEQPATQVTTTEE-PKEETTKEAKE--EEEAP-V 175
A T T +T E K IE AT T ++ P+ TK+A E ++ AP V
Sbjct: 76 ATATTTAAARKTSTPEPAKKTIEPVKKSSLATSTTAAKKTPEPVNTKKAPEPIKKVAPTV 135
Query: 176 ETNEATEVTEEVKPEVEENPAPERT-------EEEELKEETKETRIQHQWRNRSQRRTNQ 334
+ T +K + E P PE + EEEE +EET+ + + + S+ ++
Sbjct: 136 GPKKPVATTSALKKKKEPTPPPESSSEEEESEEEEETEEETESEEEESEEESESEEEESE 195
>gi|8468621|gb|AAF75554.1|AF270648_1 (AF270648) mature parasite-infected
erythrocyte surface antigen [Plasmodium falciparum]
Length = 1323
Frame 2 hits (HSPs): ___________ ________
Frame 1 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | 1323
0 500 1000
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/130 (26%), Positives = 67/130 (51%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE--EEAPVETN 184
E +++ +E E+ E ++ E + ++ + EE +EE+ +E++EE EE+ E+
Sbjct: 1072 EESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESE 1131
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTN--QLKPLRKPK 358
E +E E + E E E EEE EE + + H+ + +++ N +L+ K K
Sbjct: 1132 EESEEESEEESEEESEEESEEESEEESDEEKNTSGLVHRRNCKKEKKYNNGELEEYYKEK 1191
Query: 359 QNNFLFEKDW 388
QN F++++
Sbjct: 1192 QNEEYFDEEY 1201
Score = 108 (38.0 bits), Expect = 0.00093, P = 0.00093
Identities = 35/130 (26%), Positives = 57/130 (43%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E E ++ E + ++ + EE +EE+ +E++EE E E E EE + E
Sbjct: 1059 EREVQEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEES 1118
Query: 224 EENPAPERTEE-EELKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNNFLFEKDWKLKP 400
EE E EE EE EE E + + S+ + + K + + ++ K K
Sbjct: 1119 EEESEEESEEESEEESEEESEEESEEESEEESEEESEEESDEEK-NTSGLVHRRNCK-KE 1176
Query: 401 XGYXIIELXEF 433
Y EL E+
Sbjct: 1177 KKYNNGELEEY 1187
Score = 99 (34.8 bits), Expect = 0.067, P = 0.065
Identities = 26/89 (29%), Positives = 45/89 (50%), Frame = +2
Query: 68 KIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPER 247
+++E + E+ ++ + EE +EE+ +E++EE E E E EE + E EE E
Sbjct: 1061 EVQEESEEE--SEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEES 1118
Query: 248 TEE-EELKEETKETRIQHQWRNRSQRRTNQ 334
EE EE EE E + + S+ + +
Sbjct: 1119 EEESEEESEEESEEESEEESEEESEEESEE 1148
Score = 97 (34.1 bits), Expect = 0.15, P = 0.14
Identities = 31/112 (27%), Positives = 52/112 (46%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTK-----IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE 178
V+++ T+N ++ K I++ E+ Q + EE +EE+ +E++EE E E
Sbjct: 1029 VSEEVNEKDTKNNDKKIGKRVKKPIDDCKKEREV-QEESEEESEEESEEESEEESEEESE 1087
Query: 179 TNEATEVTEEVKPEVEENPAPERTEE-EELKEETKETRIQHQWRNRSQRRTNQ 334
E EE + E EE E EE EE EE E + + S+ + +
Sbjct: 1088 EESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEE 1140
Score = 96 (33.8 bits), Expect = 0.21, P = 0.19
Identities = 25/82 (30%), Positives = 39/82 (47%), Frame = +2
Query: 92 QPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEE-EELK 268
Q ++ + EE +EE+ +E++EE E E E EE + E EE E EE EE
Sbjct: 1063 QEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEESEEES 1122
Query: 269 EETKETRIQHQWRNRSQRRTNQ 334
EE E + + S+ + +
Sbjct: 1123 EEESEEESEEESEEESEEESEE 1144
Score = 94 (33.1 bits), Expect = 0.43, P = 0.35
Identities = 34/119 (28%), Positives = 60/119 (50%), Frame = +2
Query: 32 TTVT-ENEATEVTKIEETTPEQPATQVTTTEEPKEET--TKEAKEEEE-APVETNEATEV 199
T +T E TE KI E + ++ +V+ E E + T E++E ++ A E NE ++
Sbjct: 340 TKITSEFRETENVKITEESKDREGNKVSGPYENSENSNVTSESEETKKLAEKEENEGEKL 399
Query: 200 TEEVKPEVEENPA-PERTEEEE---LKEETKETRIQHQWRNRSQRRTNQLKPLRKPKQNN 367
E V EN P++ E+E KE ++ET+ N +++ + K +K K++
Sbjct: 400 GENVNDGASENSEDPKKLPEQEENGTKESSEETKDDKPEEN--EKKADNKKKSKKKKKSF 457
Query: 368 F 370
F
Sbjct: 458 F 458
Score = 86 (30.3 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 32/94 (34%), Positives = 47/94 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E + +++T + +E+ E + +ET + + T E KE T E+KE E+ ET
Sbjct: 210 ETDESKETDESKETDESKETGESKETGESKETGESKETGESKE--TGESKETGESK-ETG 266
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKE--ETKET 286
E+ E T E K E E E E KE E+KET
Sbjct: 267 ESKE-TGESKETGESKETGESKETGESKETGESKET 301
Score = 84 (29.6 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 31/101 (30%), Positives = 50/101 (49%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E +++T + E+ E + +ET + + T E KE T E+KE E+ ET
Sbjct: 252 ETGESKETGESKETGESKETGESKETGESKETGESKETGESKE--TGESKETGESK-ETG 308
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWR 307
E+ E T E K E E+ ++ + EETK T+I ++R
Sbjct: 309 ESKE-TGESK-ETGESKETGESKVTRIYEETKYTKITSEFR 347
Score = 84 (29.6 bits), Expect = 9.7, P = 1.0
Identities = 23/82 (28%), Positives = 37/82 (45%), Frame = +2
Query: 38 VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKP 217
V E E E+ T ++P ++ KE + +EE+ E+ E +E E +
Sbjct: 1023 VIEQEIVSEEVNEKDTKNNDKKIGKRVKKPIDDCKKEREVQEESEEESEEESEEESEEES 1082
Query: 218 EVEENPAPERTEEEELKEETKE 283
E E E EEE +EE++E
Sbjct: 1083 EEESEEESEEESEEESEEESEE 1104
Score = 39 (13.7 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 10/26 (38%), Positives = 16/26 (61%), Frame = +1
Query: 289 NPAPVEEQKPEENKPAETVEETQTEQ 366
+P + EQ EEN E+ EET+ ++
Sbjct: 413 DPKKLPEQ--EENGTKESSEETKDDK 436
Score = 37 (13.0 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 7/22 (31%), Positives = 13/22 (59%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTE 363
P+++ K E E+ EE++ E
Sbjct: 1052 PIDDCKKEREVQEESEEESEEE 1073
>gi|7494315|pir||C71607 hypothetical protein PFB0745w - malaria parasite
(Plasmodium falciparum) >gi|3845266|gb|AAC71938.1| (AE001415)
hypothetical protein [Plasmodium falciparum]
Length = 1351
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 1351
0 500 1000
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Frame = +2
Query: 110 TTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETR 289
T EE KEE ++ KE+EE + E E E+ K E +E + E+E+ KE+ KE
Sbjct: 866 TVEEEEKEEEEEKEKEKEEEEEDEKEEEEDKEKEKEEEKEEEKDKEEEDEKDKEKEKEEE 925
Query: 290 IQHQWRNRSQRRTNQLKPLRKPKQNNF 370
IQ + + Q++ + + K+N +
Sbjct: 926 IQKKVKKEIQKKVKKENQKKVKKENQY 952
Score = 106 (37.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 31/106 (29%), Positives = 54/106 (50%), Frame = +2
Query: 77 ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEE 256
+T E+ + E+ KEE ++ KEEEE E + E EE E E+ E+ +E
Sbjct: 865 KTVEEEEKEEEEEKEKEKEEEEEDEKEEEEDK-EKEKEEEKEEEKDKEEEDEKDKEKEKE 923
Query: 257 EELKEETKETRIQHQWRNRSQRRT---NQLKPLRKPKQNNFLFEKDWK 391
EE++++ K+ IQ + + +Q++ NQ + +K N L W+
Sbjct: 924 EEIQKKVKK-EIQKKVKKENQKKVKKENQYEEKKKGGANKILPFYIWR 970
Score = 95 (33.4 bits), Expect = 0.32, P = 0.28
Identities = 27/103 (26%), Positives = 51/103 (49%), Frame = +2
Query: 35 TVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVK 214
TV E E E + E+ E+ + EE KE+ +E KEEE+ E +E + E+ K
Sbjct: 866 TVEEEEKEEEEEKEKEKEEEEEDE-KEEEEDKEKEKEEEKEEEKDKEEEDEKDK--EKEK 922
Query: 215 PEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKP 343
E + + +++ KE K+ + ++Q+ + + N++ P
Sbjct: 923 EEEIQKKVKKEIQKKVKKENQKKVKKENQYEEKKKGGANKILP 965
Score = 88 (31.0 bits), Expect = 0.91, Sum P(2) = 0.60
Identities = 30/96 (31%), Positives = 47/96 (48%), Frame = +2
Query: 110 TTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETR 289
T EE KEE ++ KE+EE + E E E+ K E +E + E+E+ KE+ KE
Sbjct: 866 TVEEEEKEEEEEKEKEKEEEEEDEKEEEEDKEKEKEEEKEEEKDKEEEDEKDKEKEKEEE 925
Query: 290 IQHQWRNRSQRRTNQLKPLRKPKQNNFLFEKDWKLK 397
IQ + + Q++ K+N +K K+K
Sbjct: 926 IQKKVKKEIQKKVK--------KEN----QK--KVK 947
Score = 84 (29.6 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 25/81 (30%), Positives = 37/81 (45%), Frame = +2
Query: 155 EEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
EEEE E + E EE + E EE E+ +EEE KEE K+ + + ++
Sbjct: 868 EEEEKEEEEEKEKEKEEEEEDEKEEEEDKEKEKEEE-KEEEKDKEEEDEKDKEKEKEEEI 926
Query: 335 LKPLRKPKQNNFLFEKDWKLK 397
K ++K Q E K+K
Sbjct: 927 QKKVKKEIQKKVKKENQKKVK 947
Score = 42 (14.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 11/31 (35%), Positives = 14/31 (45%), Frame = +1
Query: 16 CTTNTNNCDRK*SNRGNQD*GNYPRTTSYPG 108
C N+NN N N + NY +T Y G
Sbjct: 91 CVINSNNIYY---NNNNNNIINYDHSTKYNG 118
>gi|11357492|pir||T48398 hypothetical protein F17C15.130 - Arabidopsis thaliana
>gi|7340656|emb|CAB82936.1| (AL162506) putative protein
[Arabidopsis thaliana]
Length = 81
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 28/68 (41%), Positives = 37/68 (54%), Frame = +2
Query: 119 EEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQH 298
EE +EE +E +EEEE E E E EE + E EE E EEEE +EE +E +
Sbjct: 6 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 65
Query: 299 QWRNRSQR 322
+ R R +R
Sbjct: 66 EDREREER 73
Score = 102 (35.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/67 (37%), Positives = 34/67 (50%), Frame = +2
Query: 89 EQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELK 268
E+ + EE +EE +E +EEEE E E E EE + E EE E EEEE +
Sbjct: 7 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 66
Query: 269 EETKETR 289
+ +E R
Sbjct: 67 DREREER 73
Score = 100 (35.2 bits), Expect = 0.00019, P = 0.00019
Identities = 25/67 (37%), Positives = 33/67 (49%), Frame = +2
Query: 74 EETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTE 253
EE E+ + EE +EE +E +EEEE E E E EE + E EE E E
Sbjct: 6 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 65
Query: 254 EEELKEE 274
E+ +EE
Sbjct: 66 EDREREE 72
Score = 92 (32.4 bits), Expect = 0.0013, P = 0.0013
Identities = 30/86 (34%), Positives = 39/86 (45%), Frame = +2
Query: 119 EEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQH 298
EE +EE +E +EEEE E E E EE + E EE E EEEE +EE +E +
Sbjct: 6 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 65
Query: 299 QWRNRSQRRTNQLKPLRKPKQNNFLF 376
+ R R +R F F
Sbjct: 66 EDREREERA--------------FAF 77
Score = 90 (31.7 bits), Expect = 0.0021, P = 0.0021
Identities = 24/68 (35%), Positives = 32/68 (47%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E E + EE E+ + EE +EE +E +EEEE E E E EE + E
Sbjct: 6 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 65
Query: 224 EENPAPER 247
E+ ER
Sbjct: 66 EDREREER 73
Score = 70 (24.6 bits), Expect = 0.40, P = 0.33
Identities = 21/67 (31%), Positives = 29/67 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
E E ++ E E E + EE E+ + EE +EE +E +EEEE E
Sbjct: 6 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 65
Query: 185 EATEVTE 205
E E E
Sbjct: 66 EDREREE 72
>gi|2981173|gb|AAC06245.1| (AF053711) neurofilament medium subunit [Serinus
canaria]
Length = 487
Frame 2 hits (HSPs): _______________ ____________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 29/89 (32%), Positives = 40/89 (44%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
+A++ E E E K EE E+ A E+ EE KE +E EE ++A
Sbjct: 102 IAEEMAAKAQEEEQEE-EKAEEEAVEEEAVSEKAAEQAAEEEEKEEEEAEEEEAAKSDAA 160
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETK 280
E K E+EE E EEEE + + K
Sbjct: 161 EEGGSEKEEIEEKEEGEEAEEEEAEAKGK 189
Score = 94 (33.1 bits), Expect = 0.13, P = 0.12
Identities = 33/114 (28%), Positives = 51/114 (44%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
+A++ E E E K EE E+ A E+ EE E KEEEEA E +
Sbjct: 102 IAEEMAAKAQEEEQEE-EKAEEEAVEEEAVSEKAAEQAAEE---EEKEEEEAEEEEAAKS 157
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
+ EE E EE E+ E EE +EE E + +++ +++ ++ P
Sbjct: 158 DAAEEGGSEKEE--IEEKEEGEEAEEEEAEAK------GKAEEAGAKVEKVKSP 203
Score = 90 (31.7 bits), Expect = 0.18, Sum P(2) = 0.16
Identities = 29/81 (35%), Positives = 35/81 (43%), Frame = +2
Query: 50 EATEVTKIEETTPEQPATQVTTTEE----PKEETTKEAKEEEEAPVETNEATEVTEEVKP 217
E E TK+E+ E EE +EE +E K EEEA VE +E E
Sbjct: 81 EIIEETKVEDEKSEMEDALSAIAEEMAAKAQEEEQEEEKAEEEA-VEEEAVSEKAAEQAA 139
Query: 218 EVEENPAPERTEEEELKEETKE 283
E EE E EEE K + E
Sbjct: 140 EEEEKEEEEAEEEEAAKSDAAE 161
Score = 85 (29.9 bits), Expect = 2.2, P = 0.89
Identities = 28/104 (26%), Positives = 45/104 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATE--VTKIEETTPEQPAT-QVTTTEEPKEETTKEAKEEEEAPV 175
E + + P T + + E T + TPE+PAT + + E K+ K E +
Sbjct: 301 EKPASPEKPRTPEKPASPEKPATPEKPRTPEKPATLEKPRSPEKPSSPLKDEKAVVEESI 360
Query: 176 ETNEATEVTEEVK--PEVEENPAPERTEEEELKEETKETRIQHQ 301
+ T+VT EV+ E + E EE K+E KE + +
Sbjct: 361 TVTKVTKVTAEVEVSKEARKEDIAVNGEVEEKKDEAKEKEAEEE 404
Score = 83 (29.2 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 25/84 (29%), Positives = 39/84 (46%), Frame = +2
Query: 35 TVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE-ATEVTEEV 211
T E+E +E+ E+ A + E+ +E+ +EA EEE + E A E E+
Sbjct: 86 TKVEDEKSEMEDALSAIAEEMAAKAQEEEQEEEKAEEEAVEEEAVSEKAAEQAAEEEEKE 145
Query: 212 KPEVEENPAPERTEEEELKEETKE 283
+ E EE A + EE E +E
Sbjct: 146 EEEAEEEEAAKSDAAEEGGSEKEE 169
Score = 83 (29.2 bits), Expect = 3.9, P = 0.98
Identities = 24/90 (26%), Positives = 42/90 (46%), Frame = +2
Query: 65 TKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV-EENPAP 241
TKI++T E P +V + EE +E K E+E + + + EE+ + EE
Sbjct: 60 TKIQKTKIEPPKLKVQ--HKFVEEIIEETKVEDEKSEMEDALSAIAEEMAAKAQEEEQEE 117
Query: 242 ERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
E+ EEE ++EE + Q ++ +
Sbjct: 118 EKAEEEAVEEEAVSEKAAEQAAEEEEKEEEE 148
Score = 82 (28.9 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 28/78 (35%), Positives = 36/78 (46%), Frame = +2
Query: 50 EATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEE 229
E E TK+E+ E EE + +E +EEE+A EA E EE V E
Sbjct: 81 EIIEETKVEDEKSEMEDALSAIAEEMAAKAQEEEQEEEKAE---EEAVE--EEA---VSE 132
Query: 230 NPAPERTEEEELKEETKE 283
A + EEEE +EE E
Sbjct: 133 KAAEQAAEEEEKEEEEAE 150
Score = 36 (12.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 9/26 (34%), Positives = 13/26 (50%), Frame = +1
Query: 280 RNPNPAPVEEQKPEENKPAETVEETQ 357
++P +PV EQ K A V + Q
Sbjct: 210 KSPPKSPVTEQAKAVQKAAAEVGKDQ 235
>gi|11496167|gb|AAG22857.1| (AY008297) RPGR-interacting protein [Mus musculus]
Length = 1331
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 1331
0 500 1000
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 35/88 (39%), Positives = 41/88 (46%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
Q + E E E EE E+ + EE +EE KE KEEEE E E E
Sbjct: 900 QMSEAEKPEGEEKEEEGGEEEVKEEEVEE-EEEEEEEEEEVKEEKEEEEE--EEREEEEE 956
Query: 200 TEEVKPEVEENPAPERTEEEELKEETKE 283
EE K E EE E EEEE +EE +E
Sbjct: 957 KEEEKEEEEEEDEKEEEEEEEEEEEEEE 984
Score = 111 (39.1 bits), Expect = 0.00045, P = 0.00045
Identities = 32/91 (35%), Positives = 45/91 (49%), Frame = +2
Query: 119 EEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQH 298
EE +EE +E +EEE E E E EEVK E EE ER EEEE KEE KE +
Sbjct: 910 EEKEEEGGEEEVKEEEVEEEEEEEEE-EEEVKEEKEEEEEEEREEEEE-KEEEKEEEEEE 967
Query: 299 QWRNRSQRRTNQLKPLRKPKQNNFL---FEKDW 388
+ + + + + + + L F ++W
Sbjct: 968 DEKEEEEEEEEEEEEEEEDENKDVLEASFTEEW 1000
Score = 107 (37.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/87 (34%), Positives = 40/87 (45%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV 223
E E E EE E+ +V +E KEE +E +EEEE E E E +E K E
Sbjct: 918 EEEVKEEEVEEEEEEEEEEEEV---KEEKEEEEEEEREEEEEKEEEKEEEEEEDE-KEEE 973
Query: 224 EENPAPERTEEEELKEETKETRIQHQW 304
EE E EEE+ ++ E +W
Sbjct: 974 EEEEEEEEEEEEDENKDVLEASFTEEW 1000
Score = 105 (37.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 30/93 (32%), Positives = 46/93 (49%), Frame = +2
Query: 50 EATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVEE 229
E ++++ E+ E+ + EE KEE +E +EEEE E E E EE + E EE
Sbjct: 897 EGFQMSEAEKPEGEEKEEE-GGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEE 955
Query: 230 NPAPERTEEEEL--KEETKETRIQHQWRNRSQRR 325
E+ EEEE KEE +E + + + +
Sbjct: 956 EKEEEKEEEEEEDEKEEEEEEEEEEEEEEEDENK 989
Score = 40 (14.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 9/23 (39%), Positives = 13/23 (56%), Frame = +1
Query: 298 PVEE-QKPEENKPAETVEETQTE 363
P+E Q PE+ KP E+ + E
Sbjct: 1015 PIEAGQYPEKRKPPVIAEKKERE 1037
Score = 40 (14.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 7/23 (30%), Positives = 17/23 (73%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQFL 372
EE++ EE++ + +E + TE+++
Sbjct: 979 EEEEEEEDENKDVLEASFTEEWV 1001
>gi|86388|pir||A27040 neurofilament triplet M protein - chicken (fragment)
>gi|63686|emb|CAA29073.1| (X05558) NF-M c-terminus [Gallus gallus]
Length = 509
Frame 2 hits (HSPs): _________________ ___________
Frame 1 hits (HSPs): ____
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 509
0 150 300 450
__________________
Annotated Domains:
PROSITE IF: Intermediate filaments signature. 44..52
__________________
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 29/89 (32%), Positives = 40/89 (44%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
+A++ E E E K EE E+ A E+ EE KE +E EE ++A
Sbjct: 124 IAEEMAAKAQEEEQEE-EKAEEEAVEEEAVSEKAAEQAAEEEEKEEEEAEEEEAAKSDAA 182
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETK 280
E K E+EE E EEEE + + K
Sbjct: 183 EEGGSKKEEIEEKEEREEAEEEEAEAKGK 211
Score = 90 (31.7 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 29/81 (35%), Positives = 35/81 (43%), Frame = +2
Query: 50 EATEVTKIEETTPEQPATQVTTTEE----PKEETTKEAKEEEEAPVETNEATEVTEEVKP 217
E E TK+E+ E EE +EE +E K EEEA VE +E E
Sbjct: 103 EIIEETKVEDEKSEMEDALSAIAEEMAAKAQEEEQEEEKAEEEA-VEEEAVSEKAAEQAA 161
Query: 218 EVEENPAPERTEEEELKEETKE 283
E EE E EEE K + E
Sbjct: 162 EEEEKEEEEAEEEEAAKSDAAE 183
Score = 85 (29.9 bits), Expect = 2.3, P = 0.90
Identities = 28/104 (26%), Positives = 45/104 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATE--VTKIEETTPEQPAT-QVTTTEEPKEETTKEAKEEEEAPV 175
E + + P T + + E T + TPE+PAT + + E K+ K E +
Sbjct: 323 EKPASPEKPRTPEKPASPEKPATPEKPRTPEKPATPEKPRSPEKPSSPLKDEKAVVEESI 382
Query: 176 ETNEATEVTEEVK--PEVEENPAPERTEEEELKEETKETRIQHQ 301
+ T+VT EV+ E + E EE K+E KE + +
Sbjct: 383 TVTKVTKVTAEVEVSKEARKEDIAVNGEVEEKKDEAKEKEAEEE 426
Score = 84 (29.6 bits), Expect = 1.5, Sum P(2) = 0.78
Identities = 25/68 (36%), Positives = 33/68 (48%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEE--PKEETTKEAKEEEEAPVETNEATEVTEEVKP 217
E A E K EE E+ A + EE K+E +E +E EEA E EA EE
Sbjct: 158 EQAAEEEEKEEEEAEEEEAAKSDAAEEGGSKKEEIEEKEEREEAEEEEAEAKGKAEEAGA 217
Query: 218 EVEENPAP 241
+VE+ +P
Sbjct: 218 KVEKVKSP 225
Score = 84 (29.6 bits), Expect = 1.5, Sum P(2) = 0.78
Identities = 27/87 (31%), Positives = 41/87 (47%), Frame = +2
Query: 35 TVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE-ATEVTEEV 211
T E+E +E+ E+ A + E+ +E+ +EA EEE + E A E E+
Sbjct: 108 TKVEDEKSEMEDALSAIAEEMAAKAQEEEQEEEKAEEEAVEEEAVSEKAAEQAAEEEEKE 167
Query: 212 KPEVEENPAPERTEEEE---LKEETKE 283
+ E EE A + EE KEE +E
Sbjct: 168 EEEAEEEEAAKSDAAEEGGSKKEEIEE 194
Score = 83 (29.2 bits), Expect = 4.2, P = 0.98
Identities = 24/90 (26%), Positives = 42/90 (46%), Frame = +2
Query: 65 TKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEV-EENPAP 241
TKI++T E P +V + EE +E K E+E + + + EE+ + EE
Sbjct: 82 TKIQKTKIEPPKLKVQ--HKFVEEIIEETKVEDEKSEMEDALSAIAEEMAAKAQEEEQEE 139
Query: 242 ERTEEEELKEETKETRIQHQWRNRSQRRTNQ 334
E+ EEE ++EE + Q ++ +
Sbjct: 140 EKAEEEAVEEEAVSEKAAEQAAEEEEKEEEE 170
Score = 80 (28.2 bits), Expect = 10., P = 1.0
Identities = 29/87 (33%), Positives = 40/87 (45%), Frame = +2
Query: 44 ENEATEVTKIEETTPEQPATQVTTTEE--PKEETTKEAKEEEEAPVETNEATEVTEEVKP 217
E A E K EE E+ A + EE K+E +E +E EEA E EA EE
Sbjct: 158 EQAAEEEEKEEEEAEEEEAAKSDAAEEGGSKKEEIEEKEEREEAEEEEAEAKGKAEEAGA 217
Query: 218 EVEE---NPA---PERTEEEELKEETK 280
+VE+ PA P+ + + E+ K
Sbjct: 218 KVEKVKSPPAKSPPKSPPKSPVTEQAK 244
Score = 36 (12.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 9/26 (34%), Positives = 13/26 (50%), Frame = +1
Query: 280 RNPNPAPVEEQKPEENKPAETVEETQ 357
++P +PV EQ K A V + Q
Sbjct: 232 KSPPKSPVTEQAKAVQKAAAEVGKDQ 257
>gi|1170515|sp|P45384|IGA2_HAEIN IMMUNOGLOBULIN A1 PROTEASE PRECURSOR (IGA1
PROTEASE) >gi|282108|pir||A41859 IgA-specific metalloendopeptidase
(EC 3.4.24.13) type 1 precursor - Haemophilus influenzae (strain
HK715) >gi|148907|gb|AAA24966.1| (M87489) IgA1 protease
[Haemophilus influenzae] >gi|248810|gb|AAB22071.1| type 1
immunoglobulin A1 protease, IgA1 protease [Haemophilus influenzae,
strain HK715, Peptide, 1702 aa]
Length = 1702
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 1702
0 500 1000 1500
__________________
Annotated Domains:
Entrez active site: PROBABLE. 288
Entrez Domain: 2 X 8 AA TANDEM REPEATS OF A-K-V 1109..1124
Entrez Repetitive region: 1. 1109..1116
Entrez Repetitive region: 2. 1117..1124
PRINTS IGASERPTASE1: IgA-specific endopeptidase 33..53
PRINTS IGASERPTASE2: IgA-specific endopeptidase 164..184
PRINTS IGASERPTASE3: IgA-specific endopeptidase 286..304
PRINTS IGASERPTASE4: IgA-specific endopeptidase 648..665
PRINTS IGASERPTASE5: IgA-specific endopeptidase 670..692
PRINTS IGASERPTASE6: IgA-specific endopeptidase 693..715
PRINTS IGASERPTASE7: IgA-specific endopeptidase 735..749
PRINTS IGASERPTASE8: IgA-specific endopeptidase 791..810
PRINTS IGASERPTASE9: IgA-specific endopeptidase 968..982
PRODOM PD002581: IGA0(2) IGA2(2) IGA1(2) 7..565
PRODOM PD014536: 567..627
PRODOM PD002581: IGA0(2) IGA2(2) IGA1(2) 645..783
PRODOM PD008859: 785..833
PRODOM PD002475: PERT(3) 847..985
PRODOM PD013961: 987..1026
PRODOM PD151477: IGA0(1) IGA2(1) 1028..1107
PRODOM PD000422: CORO(2) O17406(2) ERF2(2) 1134..1228
PRODOM PD014026: IGA0(1) IGA2(1) IGA4(1) 1230..1410
PRODOM PD007723: 1412..1701
__________________
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 0.00014, P = 0.00014
Identities = 35/126 (27%), Positives = 61/126 (48%), Frame = +2
Query: 11 EVAQQTPTTVTENEAT-EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EVA++ +V N T EV + T E T++ T + ++E + ++EE+A VE +E
Sbjct: 1072 EVAEEAKPSVKANTQTNEVAQSGSETEETQTTEIKETAKVEKEEKAKVEKEEKAKVEKDE 1131
Query: 188 ---ATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
A ++ E P+ + PAP+ + EET + + Q Q ++ + P KP
Sbjct: 1132 IQEAPQMASETSPK-QAKPAPKEVSTDTKVEET-QVQAQPQTQSTTVAAAEATSPNSKPA 1189
Query: 359 QNNFLFEK 382
+ EK
Sbjct: 1190 EETQPSEK 1197
Score = 109 (38.4 bits), Expect = 0.00096, P = 0.00096
Identities = 38/119 (31%), Positives = 55/119 (46%), Frame = +2
Query: 17 AQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATE 196
A TP+ TE A E +K E T E+ T T E +EAK +A +TNE +
Sbjct: 1034 APATPSETTETVA-ENSKQESKTVEKNEQDATETTAQNGEVAEEAKPSVKANTQTNEVAQ 1092
Query: 197 V---TEEVKP-EVEENPAPERTE----EEELKEETKETRIQHQWRNRSQRRTNQLKPLRK 352
TEE + E++E E+ E E+E K + ++ IQ + S+ Q KP K
Sbjct: 1093 SGSETEETQTTEIKETAKVEKEEKAKVEKEEKAKVEKDEIQEAPQMASETSPKQAKPAPK 1152
Score = 107 (37.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 31/93 (33%), Positives = 47/93 (50%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQ-PATQVTTTEEPKEETTKEAKEEEEAPVETNEA 190
+ P+ + NE E+ ++E P PAT TTE E + +E+K E+ + E
Sbjct: 1009 IQADVPSVPSNNE--EIARVETPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET 1066
Query: 191 T----EVTEEVKPEVEENPAPERTEEEELKEETKETR 289
T EV EE KP V+ N + E + ET+ET+
Sbjct: 1067 TAQNGEVAEEAKPSVKANT--QTNEVAQSGSETEETQ 1101
Score = 107 (37.7 bits), Expect = 0.0016, P = 0.0016
Identities = 34/97 (35%), Positives = 49/97 (50%), Frame = +2
Query: 50 EATEVTKIEETTPE-QPATQVTTTEEPKEETTKEAKEEEEA-PVETNEATEVTEEVKPEV 223
E + TK+EET + QP TQ +TT E T+ +K EE P E A VT V
Sbjct: 1153 EVSTDTKVEETQVQAQPQTQ-STTVAAAEATSPNSKPAEETQPSEKTNAEPVTPVVSKNQ 1211
Query: 224 EENPAPERTEEEEL-KEETKETRIQHQWRNRSQRRTNQ 334
EN + TE E+ K ET++T+ Q +++ + Q
Sbjct: 1212 TENTTDQPTEREKTAKVETEKTQEPPQVASQASPKQEQ 1249
Score = 87 (30.6 bits), Expect = 5.3, P = 0.99
Identities = 32/127 (25%), Positives = 55/127 (43%), Frame = +2
Query: 5 EVEVAQQTP-TTVTENEAT-------EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE 160
+V+ QT TTV EAT E T+ E T +P T V + + + T + + E
Sbjct: 1164 QVQAQPQTQSTTVAAAEATSPNSKPAEETQPSEKTNAEPVTPVVSKNQTENTTDQPTERE 1223
Query: 161 EEAPVETNEATE---VTEEVKPEVEENPA--PERT-EEEELKEETKETRIQHQWRNRSQR 322
+ A VET + E V + P+ E++ P+ E E + +Q Q + ++
Sbjct: 1224 KTAKVETEKTQEPPQVASQASPKQEQSETVQPQAVLESENVPTVNNAEEVQAQLQTQTSA 1283
Query: 323 RTNQLKP 343
+ +P
Sbjct: 1284 TVSTKQP 1290
Score = 52 (18.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 13/31 (41%), Positives = 16/31 (51%), Frame = +1
Query: 283 NPNPAPVEEQKPEENKPAE----TVEETQTE 363
+PN P EE +P E AE V + QTE
Sbjct: 1183 SPNSKPAEETQPSEKTNAEPVTPVVSKNQTE 1213
Score = 38 (13.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 9/27 (33%), Positives = 14/27 (51%), Frame = +1
Query: 292 PAPVEEQKPEENKPA--ETVEETQTEQ 366
P E P++ KPA E +T+ E+
Sbjct: 1136 PQMASETSPKQAKPAPKEVSTDTKVEE 1162
>gi|84211|pir||S00485 gene 11-1 protein precursor - malaria parasite
(Plasmodium falciparum) (fragments)
Length = 1948
Frame 2 hits (HSPs): _____________________________________
Frame 1 hits (HSPs): _____________ __________________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 1948
0 500 1000 1500
__________________
Annotated Domains:
Entrez domain: signal sequence 1..71
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 34/99 (34%), Positives = 47/99 (47%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE--EEAPVETN 184
EV ++ P + E E +EE PE+ +V + E +E +E EE E VE
Sbjct: 840 EVVEEVPEEIVEEVVPEEL-VEEMKPEEVFEEVISEELVEEMKPEEVVEEVTPEKVVEEV 898
Query: 185 EATEVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQ 301
E+ EE+KPE V E PE EE + EE E I +
Sbjct: 899 VPEELVEEMKPEEVVEEVVPEELVEEVIPEEVVEEIIPEE 938
Score = 104 (36.6 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 34/103 (33%), Positives = 48/103 (46%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE--EEAPVETN 184
EV ++ P + E E +EE PE+ +V + E +E +E EE E VE
Sbjct: 840 EVVEEVPEEIVEEVVPEEL-VEEMKPEEVFEEVISEELVEEMKPEEVVEEVTPEKVVEEV 898
Query: 185 EATEVTEEVKPE-VEENPAPERTEEEELKEETKET----RIQHQ 301
E+ EE+KPE V E PE EE + EE E + H+
Sbjct: 899 VPEELVEEMKPEEVVEEVVPEELVEEVIPEEVVEEIIPEEVVHE 942
Score = 103 (36.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/97 (34%), Positives = 43/97 (44%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE--EEAPVETNE 187
V + P V E E V +EE PE+ +V E +E +E EE E +E
Sbjct: 1079 VEEVVPVEVLE-EVVPVEVLEEVIPEEVVEEVIPVEVLEEVIPEEVVEEVIPEEFIEEMI 1137
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
E+ EEV PEV E PE EE + E E I +
Sbjct: 1138 PEEIVEEVVPEVVEEVIPEELVEEVVPVELLEEVISEE 1175
Score = 103 (36.3 bits), Expect = 0.015, P = 0.014
Identities = 35/97 (36%), Positives = 45/97 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
EVE+ + P + E TE IEE PE+ +V EE EE E EE P
Sbjct: 1847 EVEIEEILPEELIEELVTEEV-IEEVIPEEVIEEVIP-EELVEEVIPELLVEEVVPEVVE 1904
Query: 185 EATE-VTEEVKPE-VEENPAPERTEEEELKEETKETRIQ 295
E E + EE PE V + PE EE + EE E ++
Sbjct: 1905 EVQEPLVEEFIPEEVVKELVPEELVEEVIPEEIVEEVVE 1943
Score = 102 (35.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 34/86 (39%), Positives = 42/86 (48%), Frame = +2
Query: 38 VTENEATEVTK--IEETTPEQPATQVTTTEEPKEETTKEAKEE---EEAPVETNEATEVT 202
+TE A EV +EE PE+ +V E KE +E EE EE E E E+
Sbjct: 793 ITEKPAEEVIPELVEEVIPEEIVEEVLPEEVVKEVIPEEVVEEVIPEEVVEEVPE--EIV 850
Query: 203 EEVKPE-VEENPAPERTEEEELKEETKE 283
EEV PE + E PE EE + EE E
Sbjct: 851 EEVVPEELVEEMKPEEVFEEVISEELVE 878
Score = 101 (35.6 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 38/101 (37%), Positives = 45/101 (44%), Frame = +2
Query: 2 HEVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVET 181
HE V + P V E ++EE PE+ +V EE EE EE PVE
Sbjct: 1040 HEEIVEEIIPEEVVEEVVP--AEVEEMIPEKIVEEVIP-EELVEEVVPVEVLEEVVPVEV 1096
Query: 182 NEAT---EVTEEVKP-EVEENPAPERTEEEELKEETKETRIQHQ 301
E EV EEV P EV E PE EE + EE E I +
Sbjct: 1097 LEEVIPEEVVEEVIPVEVLEEVIPEEVVEEVIPEEFIEEMIPEE 1140
Score = 100 (35.2 bits), Expect = 0.0017, Sum P(2) = 0.0017
Identities = 36/99 (36%), Positives = 46/99 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTK---IEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPV 175
EVEV + P + E EV IEE PE+ +V EE EE E +E P
Sbjct: 955 EVEVEEIIPKELVEVIPEEVLPEELIEEVIPEEIIEEVVIPEEVVEEVIPEEIVQEVIP- 1013
Query: 176 ETNEATEVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQ 301
++ EEV PE + E PE EEE+ EE E I +
Sbjct: 1014 -----EDLMEEVVPEEIIEEKIPEEIVEEEIHEEIVEEIIPEE 1051
Score = 100 (35.2 bits), Expect = 0.0017, Sum P(2) = 0.0017
Identities = 37/109 (33%), Positives = 48/109 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPE------QPATQVTTTEEPKEETTKEAKEEEE 166
EV V ++ P + E E+ +EE PE + + EE EE E EE
Sbjct: 1228 EVLVEEEVPEELVEEVIPELL-VEEVVPEVVEEVQEQLVEEFIPEEVVEELVPEELVEEV 1286
Query: 167 APVETNEAT--EVTEEVKPE--VEE-NPAPERTEEEELKEETKETRIQHQ 301
P E E EV EE+ PE +EE P PE EE + EE E I +
Sbjct: 1287 IPEEIVEEVVEEVVEEIIPEEVIEEVRPGPEELVEEVIPEELVEEVIPEE 1336
Score = 99 (34.8 bits), Expect = 0.014, Sum P(2) = 0.014
Identities = 34/93 (36%), Positives = 44/93 (47%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P + E E E ++ E PE+ +V EE EE E EE P E E
Sbjct: 1750 EVVEEVIPKEIVEEEVPE--ELVEVVPEELVEEVVP-EELVEEVVPEELVEEVVPEELVE 1806
Query: 188 AT---EVTEEVKPE-VEENPAPERTEEEELKEETKE 283
E+ EEV PE + E PE EE + EE E
Sbjct: 1807 EVVPEELVEEVVPEELVEEVVPEELVEEVVPEEVVE 1842
Score = 97 (34.1 bits), Expect = 0.0098, Sum P(2) = 0.0097
Identities = 34/91 (37%), Positives = 43/91 (47%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + P + E EV +EE PE+ +V EE EE E EEE P E E
Sbjct: 1347 VEEVIPEELVEEVVPEV--VEEVVPEELVEEVIP-EELVEEVIPEVLVEEEVPEELVEEV 1403
Query: 194 ---EVTEEVKPE-VEENPAPERTEEEELKEETKE 283
E+ EE+ PE + E PE EE + EE E
Sbjct: 1404 IPEELVEEMLPEELIEVVVPEELVEEVVPEELVE 1437
Score = 97 (34.1 bits), Expect = 0.23, P = 0.21
Identities = 37/101 (36%), Positives = 47/101 (46%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
EVE+ + P + E TE IEE PE+ +V EE EE E EE P
Sbjct: 1847 EVEIEEILPEELIEELVTEEV-IEEVIPEEVIEEVIP-EELVEEVIPELLVEEVVPEVVE 1904
Query: 185 EATE-VTEEVKPE--VEENPAPERTEE---EELKEETKETRIQ 295
E E + EE PE V+E E EE EE+ EE E ++
Sbjct: 1905 EVQEPLVEEFIPEEVVKELVPEELVEEVIPEEIVEEVVEEVVE 1947
Score = 96 (33.8 bits), Expect = 0.014, Sum P(2) = 0.014
Identities = 31/89 (34%), Positives = 45/89 (50%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P + E +E +EE P++ A +V + + +E KE EEE P E E
Sbjct: 1515 EVVEEVIPKEIVEEVVSEEV-VEEVIPKEIAEEVLSAQVFEEVIPKEIVEEE-VPEELVE 1572
Query: 188 AT--EVTEEVKPE-VEENPAPERTEEEELKE 271
E+ EEV PE + E PE EE + E
Sbjct: 1573 VAPEELVEEVVPEELSEEVVPEELVEEVVPE 1603
Score = 96 (33.8 bits), Expect = 0.014, Sum P(2) = 0.014
Identities = 31/93 (33%), Positives = 44/93 (47%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + T + E EV +IEE P++ +V E+ E +E EE + VE
Sbjct: 693 VEEVTAEEIVEEFVVEV-EIEEKIPKELVEEVMPEEDVDEVVPEELVEEPDEVVEEVTTE 751
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKETRI 292
E+TEEV PE E+ EEEL E+ +I
Sbjct: 752 ELTEEVIPE----ELIEKVVEEELVEKVVAQKI 780
Score = 95 (33.4 bits), Expect = 0.54, Sum P(2) = 0.42
Identities = 32/92 (34%), Positives = 41/92 (44%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + P + E E +EE PE+ +V E +E +E EE E VE E
Sbjct: 1796 VEEVVPEELVEEVVPEEL-VEEVVPEELVEEVVPEELVEEVVPEEVVEEVEEEVEIEEIL 1854
Query: 194 --EVTEE-VKPEVEENPAPERTEEEELKEETKE 283
E+ EE V EV E PE EE + EE E
Sbjct: 1855 PEELIEELVTEEVIEEVIPEEVIEEVIPEELVE 1887
Score = 94 (33.1 bits), Expect = 0.034, Sum P(2) = 0.034
Identities = 34/93 (36%), Positives = 45/93 (48%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE-EEAPVET 181
EV V + P + E EV +EE PE+ +V E EE E EE +E VE
Sbjct: 1210 EVLVEEVIPEELVEEVIPEVL-VEEEVPEELVEEVIP-ELLVEEVVPEVVEEVQEQLVEE 1267
Query: 182 NEATEVTEEVKPE-VEENPAPERTEEEELKEETKE 283
EV EE+ PE + E PE EE ++E +E
Sbjct: 1268 FIPEEVVEELVPEELVEEVIPEEIVEEVVEEVVEE 1302
Score = 94 (33.1 bits), Expect = 0.034, Sum P(2) = 0.034
Identities = 35/105 (33%), Positives = 54/105 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTT-TEEPK----EETTKEAK-EEEE 166
++ + ++ T ++ + EV + E+ E+ T+ TEE K E+ T+E K E+E
Sbjct: 514 KIGIEKKELETFVQDVSDEVLQDEQLIEEEKLTEEEKLTEEEKLTEEEKLTEEEKLTEDE 573
Query: 167 APVETNEATE---VTEEVKPEVEENPAPER--TEEEELKEETKET 286
+E + TE +TEE K EE E TEEE+L EE K T
Sbjct: 574 QLIEEEKLTEEEKLTEEEKLTEEEKLTEEEKLTEEEKLTEEEKLT 618
Score = 94 (33.1 bits), Expect = 0.034, Sum P(2) = 0.034
Identities = 36/107 (33%), Positives = 47/107 (43%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE----PK---EETTKEAKEEEEAP 172
+ ++ P + E E E +EE PE+ +V E P+ EE E EE P
Sbjct: 1026 IEEKIPEEIVEEEIHEEI-VEEIIPEEVVEEVVPAEVEEMIPEKIVEEVIPEELVEEVVP 1084
Query: 173 VETNEAT---EVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQW 304
VE E EV EEV PE V E P EE + EE E I ++
Sbjct: 1085 VEVLEEVVPVEVLEEVIPEEVVEEVIPVEVLEEVIPEEVVEEVIPEEF 1132
Score = 93 (32.7 bits), Expect = 0.049, Sum P(2) = 0.047
Identities = 34/86 (39%), Positives = 42/86 (48%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEE--EAPVETNEATEVT 202
P V E E ++E PE +V E +E+ +E EEE E VE EV
Sbjct: 995 PEEVVEEVIPEEI-VQEVIPEDLMEEVVPEEIIEEKIPEEIVEEEIHEEIVEEIIPEEVV 1053
Query: 203 EEVKP-EVEENPAPERTEEEELKEETKE 283
EEV P EVEE PE+ EE + EE E
Sbjct: 1054 EEVVPAEVEEM-IPEKIVEEVIPEELVE 1080
Score = 93 (32.7 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 33/89 (37%), Positives = 43/89 (48%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE-- 187
V ++ P + E E+ +EE PE+ + +V EE EE E EE P E
Sbjct: 1562 VEEEVPEELVEVAPEEL--VEEVVPEELSEEVVP-EELVEEVVPEGLVEEVVPEELVVFL 1618
Query: 188 ATEVTEEVKPEVEENPAPERTEE---EELKEE 274
E+ EEV PEV E E EE EE+ EE
Sbjct: 1619 PEELVEEVVPEVVEEVEEELVEEFIPEEVVEE 1650
Score = 92 (32.4 bits), Expect = 0.069, Sum P(2) = 0.066
Identities = 36/99 (36%), Positives = 44/99 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
EV V ++ P + E E +EE PE+ +V EE EE E EE P
Sbjct: 1388 EVLVEEEVPEELVEEVIPEEL-VEEMLPEE-LIEVVVPEELVEEVVPEELVEEVVP---- 1441
Query: 185 EATEVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQ 301
EV EEV PE + E PE EE L EE E I +
Sbjct: 1442 --EEVVEEVIPEELIEELVPEVEIEEILPEELIEELIPEE 1479
Score = 92 (32.4 bits), Expect = 1.3, P = 0.72
Identities = 34/99 (34%), Positives = 44/99 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
EVE+ + P + E TE IEE PE+ +V EE EE E EE P
Sbjct: 1847 EVEIEEILPEELIEELVTEEV-IEEVIPEEVIEEVIP-EELVEEVIPELLVEEVVP---- 1900
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
EV EEV+ + E PE +E + EE E I +
Sbjct: 1901 ---EVVEEVQEPLVEEFIPEEVVKELVPEELVEEVIPEE 1936
Score = 91 (32.0 bits), Expect = 0.11, Sum P(2) = 0.10
Identities = 34/92 (36%), Positives = 41/92 (44%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + P V E +E +EE PE+ +VT E+ EE E EE P E E
Sbjct: 859 VEEMKPEEVFEEVISEEL-VEEMKPEEVVEEVTP-EKVVEEVVPEELVEEMKPEEVVEEV 916
Query: 194 ---EVTEEVKPE-VEENPAPERTEEEELKEETKE 283
E+ EEV PE V E PE E EE E
Sbjct: 917 VPEELVEEVIPEEVVEEIIPEEVVHEAKHEELFE 950
Score = 91 (32.0 bits), Expect = 0.11, Sum P(2) = 0.10
Identities = 34/95 (35%), Positives = 42/95 (44%), Frame = +2
Query: 8 VEVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
VEV ++ P V E E IEE PE+ +V E EE E EE PVE
Sbjct: 1112 VEVLEEVIPEEVVEEVIPEEF-IEEMIPEEIVEEVVP--EVVEEVIPEELVEEVVPVELL 1168
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKETRI 292
E ++EE+ EV E EEL EE K +
Sbjct: 1169 EEV-ISEELLEEVIPEELVEEVVPEELVEEMKPEEV 1203
Score = 91 (32.0 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 37/91 (40%), Positives = 44/91 (48%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + P V E E E +IEE PE+ ++ T EE EE E EE P E E
Sbjct: 1832 VEEVVPEEVVE-EVEEEVEIEEILPEELIEELVT-EEVIEEVIPEEVIEEVIPEELVEEV 1889
Query: 194 --EV-TEEVKPEVEENPAPERTEEEELKEET-KE 283
E+ EEV PEV E E EE + EE KE
Sbjct: 1890 IPELLVEEVVPEVVEE-VQEPLVEEFIPEEVVKE 1922
Score = 90 (31.7 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 32/94 (34%), Positives = 39/94 (41%), Frame = +2
Query: 11 EVAQQTPTTVTENEATEVTKIEETTP-EQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
E+ ++ V E E IEE P + + EE EE E E P E E
Sbjct: 1290 EIVEEVVEEVVEEIIPEEV-IEEVRPGPEELVEEVIPEELVEEVIPEELVAEVIPEELVE 1348
Query: 188 AT---EVTEEVKPEVEENPAPERTEEEELKEETKE 283
E+ EEV PEV E PE EE + EE E
Sbjct: 1349 EVIPEELVEEVVPEVVEEVVPEELVEEVIPEELVE 1383
Score = 89 (31.3 bits), Expect = 0.81, Sum P(2) = 0.56
Identities = 34/94 (36%), Positives = 43/94 (45%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P V E E +EE PE+ +V EE E E EE P E E
Sbjct: 1678 EVVKEVIPEEVVEEVLPEEL-VEEVVPEELVEEVIP-EELIAEVVSEQLVEEVLPEEVVE 1735
Query: 188 ATE---VTEEVKPE-VEENPAPERTEEEELKEETKE 283
+ + EEV PE V E P+ EEE+ EE E
Sbjct: 1736 GSNPKGMLEEVIPEEVVEEVIPKEIVEEEVPEELVE 1771
Score = 89 (31.3 bits), Expect = 0.81, Sum P(2) = 0.56
Identities = 44/128 (34%), Positives = 56/128 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATE---VTKIEETTPEQPATQVTTTEEPKEETTKEAKEE----- 160
E + ++ V E E E KI E PE+ +V T E+P EE E EE
Sbjct: 755 EEVIPEELIEKVVEEELVEKVVAQKIVEVIPEELIEEVIT-EKPAEEVIPELVEEVIPEE 813
Query: 161 --EEA-PVETNEAT---EVTEEVKPE--VEENPAP--ERTEEEELKEETKETRIQHQWRN 310
EE P E + EV EEV PE VEE P E EEL EE K + +
Sbjct: 814 IVEEVLPEEVVKEVIPEEVVEEVIPEEVVEEVPEEIVEEVVPEELVEEMKPEEVFEEVI- 872
Query: 311 RSQRRTNQLKP 343
S+ ++KP
Sbjct: 873 -SEELVEEMKP 882
Score = 88 (31.0 bits), Expect = 0.30, Sum P(2) = 0.26
Identities = 35/94 (37%), Positives = 43/94 (45%), Frame = +2
Query: 8 VEVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
VEV ++ P V E E V +EE PE+ +V EE EE E EE P
Sbjct: 1094 VEVLEEVIPEEVVE-EVIPVEVLEEVIPEEVVEEVIP-EEFIEEMIPEEIVEEVVPEVVE 1151
Query: 185 EAT--EVTEEVKP-EVEENPAPERTEEEELKEETKE 283
E E+ EEV P E+ E E EE + EE E
Sbjct: 1152 EVIPEELVEEVVPVELLEEVISEELLEEVIPEELVE 1187
Score = 88 (31.0 bits), Expect = 1.2, Sum P(2) = 0.70
Identities = 32/91 (35%), Positives = 42/91 (46%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P + E E E ++ E PE+ +V EE EE E EE P
Sbjct: 1750 EVVEEVIPKEIVEEEVPE--ELVEVVPEELVEEVVP-EELVEEVVPEELVEEVVP----- 1801
Query: 188 ATEVTEEVKPE-VEENPAPERTEEEELKEETKE 283
E+ EEV PE + E PE EE + EE E
Sbjct: 1802 -EELVEEVVPEELVEEVVPEELVEEVVPEELVE 1833
Score = 87 (30.6 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 36/93 (38%), Positives = 43/93 (46%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTT-TEEPKEETTKEAKEEEEAPVE-TNE 187
V + P + E EV +EE PE+ +V EE EE E EE P E E
Sbjct: 1283 VEEVIPEEIVEEVVEEV--VEEIIPEEVIEEVRPGPEELVEEVIPEELVEEVIPEELVAE 1340
Query: 188 AT--EVTEEVKPE-VEENPAPERTEE---EELKEE 274
E+ EEV PE + E PE EE EEL EE
Sbjct: 1341 VIPEELVEEVIPEELVEEVVPEVVEEVVPEELVEE 1375
Score = 87 (30.6 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 36/94 (38%), Positives = 44/94 (46%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P + E E V +EE E+ +V EE EE E EE P E E
Sbjct: 1148 EVVEEVIPEELVE-EVVPVELLEEVISEELLEEVIP-EELVEEVVPEELVEEMKPEEVLE 1205
Query: 188 AT--EV-TEEVKPE-VEENPAPERTEEEELKEETKE 283
EV EEV PE + E PE EEE+ EE E
Sbjct: 1206 EVIPEVLVEEVIPEELVEEVIPEVLVEEEVPEELVE 1241
Score = 86 (30.3 bits), Expect = 0.56, Sum P(2) = 0.43
Identities = 36/100 (36%), Positives = 46/100 (46%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE-- 187
VA+ P + E E +EE PE+ +V +E EE E EE P E E
Sbjct: 1490 VAEVIPGEIVEEVVPEEL-VEEVVPEEVVEEVIP-KEIVEEVVSEEVVEEVIPKEIAEEV 1547
Query: 188 -ATEVTEEVKPE--VEEN-P------APERTEEEELKEETKE 283
+ +V EEV P+ VEE P APE EE + EE E
Sbjct: 1548 LSAQVFEEVIPKEIVEEEVPEELVEVAPEELVEEVVPEELSE 1589
Score = 86 (30.3 bits), Expect = 0.56, Sum P(2) = 0.43
Identities = 31/101 (30%), Positives = 46/101 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQ----P--ATQVTTTEEPKEETTKEA---KE 157
EVE+ ++ P + E E ++E PE+ P + TTEE EE E K
Sbjct: 708 EVEIEEKIPKELVEEVMPE-EDVDEVVPEELVEEPDEVVEEVTTEELTEEVIPEELIEKV 766
Query: 158 EEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
EE VE A ++ E + E+ E E+ EE + E +E
Sbjct: 767 VEEELVEKVVAQKIVEVIPEELIEEVITEKPAEEVIPELVEE 808
Score = 85 (29.9 bits), Expect = 0.81, Sum P(2) = 0.56
Identities = 30/91 (32%), Positives = 43/91 (47%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P + E +E +EE P++ A +V + + +E KE EEE P E
Sbjct: 1515 EVVEEVIPKEIVEEVVSEEV-VEEVIPKEIAEEVLSAQVFEEVIPKEIVEEE-VP---EE 1569
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
EV E E+ E PE EE + EE E
Sbjct: 1570 LVEVAPE---ELVEEVVPEELSEEVVPEELVE 1598
Score = 85 (29.9 bits), Expect = 0.81, Sum P(2) = 0.56
Identities = 33/94 (35%), Positives = 41/94 (43%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
EV ++ P + E E +EE PE + EE EE E EE P E E
Sbjct: 1362 EVVEEVVPEELVEEVIPEEL-VEEVIPEV-LVEEEVPEELVEEVIPEELVEEMLPEELIE 1419
Query: 188 AT---EVTEEVKPE-VEENPAPERTEEEELKEETKE 283
E+ EEV PE + E PE EE + EE E
Sbjct: 1420 VVVPEELVEEVVPEELVEEVVPEEVVEEVIPEELIE 1455
Score = 82 (28.9 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 30/84 (35%), Positives = 42/84 (50%), Frame = +2
Query: 38 VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATE---VTEE 208
+TE E ++T+ E+ T E+ T+ E ++ +E EEE E + TE +TEE
Sbjct: 545 LTEEE--KLTEEEKLTEEEKLTEEEKLTEDEQLIEEEKLTEEEKLTEEEKLTEEEKLTEE 602
Query: 209 VKPEVEENPAPER--TEEEELKEETK 280
K EE E TEEE EE K
Sbjct: 603 EKLTEEEKLTEEEKLTEEEIFIEEDK 628
Score = 82 (28.9 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 35/88 (39%), Positives = 39/88 (44%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEA--TE 196
+ P V E TE EE PE+ +V EE E K E P E E TE
Sbjct: 739 EEPDEVVEEVTTEELT-EEVIPEELIEKVV--EEELVEKVVAQKIVEVIPEELIEEVITE 795
Query: 197 V-TEEVKPEVEENPAPERTEEEELKEET-KE 283
EEV PE+ E PE EE L EE KE
Sbjct: 796 KPAEEVIPELVEEVIPEEIVEEVLPEEVVKE 826
Score = 82 (28.9 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 26/90 (28%), Positives = 38/90 (42%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
+ + P + E +EE PE+ +V E+ EE E EE+ P E
Sbjct: 980 IEEVIPEEIIEEVVIPEEVVEEVIPEEIVQEVIP-EDLMEEVVPEEIIEEKIPEEI---- 1034
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKE 283
V EE+ E+ E PE EE + E +E
Sbjct: 1035 -VEEEIHEEIVEEIIPEEVVEEVVPAEVEE 1063
Score = 81 (28.5 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 33/87 (37%), Positives = 40/87 (45%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + P + E E +EE PE +V EE EE E EEE P
Sbjct: 1186 VEEVVPEELVEEMKPEEV-LEEVIPEVLVEEVIP-EELVEEVIPEVLVEEEVP------E 1237
Query: 194 EVTEEVKPEV-EENPAPERTEE--EELKEE 274
E+ EEV PE+ E PE EE E+L EE
Sbjct: 1238 ELVEEVIPELLVEEVVPEVVEEVQEQLVEE 1267
Score = 81 (28.5 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 33/98 (33%), Positives = 42/98 (42%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE-TNEA 190
V + P V E E IEE PE ++ EE EE E EE P E E
Sbjct: 1436 VEEVVPEEVVEEVIPEEL-IEELVPEVEIEEILP-EELIEELIPEEIIEEVIPEELVAEV 1493
Query: 191 T--EVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQ 301
E+ EEV PE + E PE EE + +E E + +
Sbjct: 1494 IPGEIVEEVVPEELVEEVVPEEVVEEVIPKEIVEEVVSEE 1533
Score = 81 (28.5 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 33/99 (33%), Positives = 42/99 (42%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETN 184
EVE+ + P + E E IEE PE+ +V E EE E EE P
Sbjct: 1460 EVEIEEILPEELIEELIPEEI-IEEVIPEELVAEVIPGEIV-EEVVPEELVEEVVP---- 1513
Query: 185 EATEVTEEVKP-EVEENPAPERTEEEELKEETKETRIQHQ 301
EV EEV P E+ E E EE + +E E + Q
Sbjct: 1514 --EEVVEEVIPKEIVEEVVSEEVVEEVIPKEIAEEVLSAQ 1551
Score = 81 (28.5 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 36/104 (34%), Positives = 47/104 (45%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTT---TEEPKEETTKEAKE---EEE 166
EV V + P + E EV +EE PE+ +V EE E +E +E EE
Sbjct: 1210 EVLVEEVIPEELVEEVIPEVL-VEEEVPEELVEEVIPELLVEEVVPEVVEEVQEQLVEEF 1268
Query: 167 APVETNEAT---EVTEEVKPE-VEENPAPERTEE---EELKEETK 280
P E E E+ EEV PE + E E EE EE+ EE +
Sbjct: 1269 IPEEVVEELVPEELVEEVIPEEIVEEVVEEVVEEIIPEEVIEEVR 1313
Score = 80 (28.2 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 32/96 (33%), Positives = 39/96 (40%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
VA+ P + E E +EE PE + EE EE E EE P E
Sbjct: 1338 VAEVIPEELVEEVIPEEL-VEEVVPE--VVEEVVPEELVEEVIPEELVEEVIP----EVL 1390
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKETRIQHQ 301
V EEV E+ E PE EE L EE E + +
Sbjct: 1391 -VEEEVPEELVEEVIPEELVEEMLPEELIEVVVPEE 1425
Score = 79 (27.8 bits), Expect = 5.3, Sum P(2) = 0.99
Identities = 31/85 (36%), Positives = 39/85 (45%), Frame = +2
Query: 38 VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT---EVTEE 208
V E + EV +EE TPE+ +V EE EE E EE P E E EV EE
Sbjct: 877 VEEMKPEEV--VEEVTPEKVVEEVVP-EELVEEMKPEEVVEEVVPEELVEEVIPEEVVEE 933
Query: 209 VKPEVEENPAPERTEEEELKEETKETRI 292
+ PE + A E+L E + I
Sbjct: 934 IIPEEVVHEAKHEELFEKLVPEVEVEEI 961
Score = 79 (27.8 bits), Expect = 5.3, Sum P(2) = 0.99
Identities = 28/90 (31%), Positives = 41/90 (45%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
V + T + E EV +IEE P++ +V E+ E +E EE + VE
Sbjct: 693 VEEVTAEEIVEEFVVEV-EIEEKIPKELVEEVMPEEDVDEVVPEELVEEPDEVVEEVTTE 751
Query: 194 EVTEEVKPEVEENPAPERTEEEELKEETKE 283
E+TEEV PE E+ ++EE E
Sbjct: 752 ELTEEV--------IPEELIEKVVEEELVE 773
Score = 79 (27.8 bits), Expect = 5.3, Sum P(2) = 0.99
Identities = 32/99 (32%), Positives = 42/99 (42%), Frame = +2
Query: 11 EVAQQT-PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
E+ Q+ P + E E IEE PE+ + EE EE E EE P E E
Sbjct: 1006 EIVQEVIPEDLMEEVVPEEI-IEEKIPEE-IVEEEIHEEIVEEIIPEEVVEEVVPAEVEE 1063
Query: 188 AT--EVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQ 301
++ EEV PE + E P EE + E E I +
Sbjct: 1064 MIPEKIVEEVIPEELVEEVVPVEVLEEVVPVEVLEEVIPEE 1104
Score = 77 (27.1 bits), Expect = 9.7, Sum P(2) = 1.0
Identities = 31/93 (33%), Positives = 40/93 (43%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVT--TTEEP-KEETTKEAKEEEEAPVETN 184
V + P V E E +EE PE+ +V EE EE +E + E VE
Sbjct: 1265 VEEFIPEEVVEELVPEEL-VEEVIPEEIVEEVVEEVVEEIIPEEVIEEVRPGPEELVEEV 1323
Query: 185 EATEVTEEVKPE-VEENPAPERTEEEELKEETKE 283
E+ EEV PE + PE EE + EE E
Sbjct: 1324 IPEELVEEVIPEELVAEVIPEELVEEVIPEELVE 1357
Score = 77 (27.1 bits), Expect = 9.7, Sum P(2) = 1.0
Identities = 30/96 (31%), Positives = 40/96 (41%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT 193
+ + P + E EV +EE PE+ +V E EE E EE P
Sbjct: 1133 IEEMIPEEIVEEVVPEV--VEEVIPEELVEEVVPVEL-LEEVISEELLEEVIP------E 1183
Query: 194 EVTEEVKPE-VEENPAPERTEEEELKEETKETRIQHQ 301
E+ EEV PE + E PE EE + E E I +
Sbjct: 1184 ELVEEVVPEELVEEMKPEEVLEEVIPEVLVEEVIPEE 1220
Score = 50 (17.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/29 (51%), Positives = 18/29 (62%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFLV*ERL 387
VEE+ EE P E VEE E+ LV E+L
Sbjct: 1634 VEEELVEEFIPEEVVEELVPEE-LVPEKL 1661
Score = 49 (17.2 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 11/24 (45%), Positives = 14/24 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE KP E VEE E+ +
Sbjct: 899 VPEELVEEMKPEEVVEEVVPEELV 922
Score = 49 (17.2 bits), Expect = 0.043, Sum P(2) = 0.042
Identities = 12/24 (50%), Positives = 15/24 (62%), Frame = +1
Query: 301 VEEQKPEE--NKPAETVEETQTEQ 366
V+E PEE +P E VEE TE+
Sbjct: 729 VDEVVPEELVEEPDEVVEEVTTEE 752
Score = 48 (16.9 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
+ E+ EE KP E VEE E+
Sbjct: 872 ISEELVEEMKPEEVVEEVTPEK 893
Score = 45 (15.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 11/24 (45%), Positives = 14/24 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V+EQ EE P E VEE E+ +
Sbjct: 1260 VQEQLVEEFIPEEVVEELVPEELV 1283
Score = 44 (15.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/23 (43%), Positives = 14/23 (60%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQFL 372
EE + EE P E +EE TE+ +
Sbjct: 1846 EEVEIEEILPEELIEELVTEEVI 1868
Score = 44 (15.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/27 (37%), Positives = 14/27 (51%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTEQFL 372
P + E PEE P E +EE E+ +
Sbjct: 963 PKELVEVIPEEVLPEELIEEVIPEEII 989
Score = 43 (15.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 10/24 (41%), Positives = 14/24 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
+ E+ EE P E VEE + E+ L
Sbjct: 1181 IPEELVEEVVPEELVEEMKPEEVL 1204
Score = 43 (15.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/24 (37%), Positives = 14/24 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
VEE PEE P + +E+ E+ +
Sbjct: 1648 VEELVPEELVPEKLIEDVVPEEIV 1671
Score = 43 (15.1 bits), Expect = 0.0029, Sum P(2) = 0.0029
Identities = 13/26 (50%), Positives = 14/26 (53%), Frame = +1
Query: 301 VEEQKPEENK----PAETVEETQTEQ 366
VEE KPEE P E VEE E+
Sbjct: 904 VEEMKPEEVVEEVVPEELVEEVIPEE 929
Score = 43 (15.1 bits), Expect = 0.0029, Sum P(2) = 0.0029
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = +1
Query: 301 VEEQKPEEN----KPAETVEETQTEQFL 372
VEE KPEE P + VEE E+ +
Sbjct: 877 VEEMKPEEVVEEVTPEKVVEEVVPEELV 904
Score = 42 (14.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTE 363
V E+ EE P E VEE + E
Sbjct: 1827 VPEELVEEVVPEEVVEEVEEE 1847
Score = 42 (14.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 14/37 (37%), Positives = 18/37 (48%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTEQFLV*ERLEA*AP 402
PA VEE PE+ E + E E+ + E LE P
Sbjct: 1058 PAEVEEMIPEKIVE-EVIPEELVEEVVPVEVLEEVVP 1093
Score = 41 (14.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/24 (37%), Positives = 14/24 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
+ E+ EE P E +EE +E+ L
Sbjct: 1154 IPEELVEEVVPVELLEEVISEELL 1177
Score = 41 (14.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1431 VPEELVEEVVPEEVVEEVIPEELI 1454
Score = 41 (14.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/28 (46%), Positives = 15/28 (53%), Frame = +1
Query: 301 VEEQKP----EENKPAETVEETQTEQFL 372
VEE P EE P E VEE E+F+
Sbjct: 1106 VEEVIPVEVLEEVIPEEVVEEVIPEEFI 1133
Score = 41 (14.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 14/34 (41%), Positives = 17/34 (50%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFLV*ERLEA*AP 402
VEE PE E VEE E+F+ E +E P
Sbjct: 1623 VEEVVPEV---VEEVEEELVEEFIPEEVVEELVP 1653
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E+ EE P E VEE +E+
Sbjct: 1512 VPEEVVEEVIPKEIVEEVVSEE 1533
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1773 VPEELVEEVVPEELVEEVVPEELV 1796
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1782 VPEELVEEVVPEELVEEVVPEELV 1805
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1791 VPEELVEEVVPEELVEEVVPEELV 1814
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1800 VPEELVEEVVPEELVEEVVPEELV 1823
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1809 VPEELVEEVVPEELVEEVVPEELV 1832
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = +1
Query: 301 VEEQKPEENK----PAETVEETQTEQFL 372
VEE+ PEE P E VEE E+ +
Sbjct: 1391 VEEEVPEELVEEVIPEELVEEMLPEELI 1418
Score = 40 (14.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 14/34 (41%), Positives = 17/34 (50%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFLV*ERLEA*AP 402
VEE PEE E V E + E+ L E +E P
Sbjct: 1445 VEEVIPEE-LIEELVPEVEIEEILPEELIEELIP 1477
Score = 40 (14.1 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E+ EE P E VEE + E+
Sbjct: 845 VPEEIVEEVVPEELVEEMKPEE 866
Score = 40 (14.1 bits), Expect = 0.35, Sum P(2) = 0.30
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E + EE P E VEE E+
Sbjct: 706 VVEVEIEEKIPKELVEEVMPEE 727
Score = 39 (13.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E+ EE P E VEE E+
Sbjct: 1422 VPEELVEEVVPEELVEEVVPEE 1443
Score = 39 (13.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E+ EE P E VEE E+
Sbjct: 1818 VPEELVEEVVPEELVEEVVPEE 1839
Score = 39 (13.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
+ E+ EE P E VEE E+ +
Sbjct: 1684 IPEEVVEEVLPEELVEEVVPEELV 1707
Score = 39 (13.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 13/29 (44%), Positives = 15/29 (51%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFLV*ERL 387
+ E EE P E VEE E+ LV E L
Sbjct: 1386 IPEVLVEEEVPEELVEEVIPEE-LVEEML 1413
Score = 38 (13.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 10/21 (47%), Positives = 11/21 (52%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTE 363
V E+ EE P E VEE E
Sbjct: 1583 VPEELSEEVVPEELVEEVVPE 1603
Score = 38 (13.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
+ E+ EE P E VEE E+ +
Sbjct: 1172 ISEELLEEVIPEELVEEVVPEELV 1195
Score = 38 (13.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
+ E+ EE P E VEE E+ +
Sbjct: 1269 IPEEVVEELVPEELVEEVIPEEIV 1292
Score = 38 (13.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = +1
Query: 298 PVEEQKPEENKPAETVEETQTEQFL 372
P E+ EE P E VEE E+ +
Sbjct: 1314 PGPEELVEEVIPEELVEEVIPEELV 1338
Score = 38 (13.4 bits), Expect = 0.0093, Sum P(2) = 0.0093
Identities = 12/26 (46%), Positives = 14/26 (53%), Frame = +1
Query: 301 VEEQKPE----ENKPAETVEETQTEQ 366
VEE PE E P E VEE + E+
Sbjct: 886 VEEVTPEKVVEEVVPEELVEEMKPEE 911
Score = 38 (13.4 bits), Expect = 0.0093, Sum P(2) = 0.0093
Identities = 11/37 (29%), Positives = 17/37 (45%), Frame = +1
Query: 262 IERGN*RNPNPAPVEEQKPEENKPAETVEETQTEQFL 372
+E N + + E+ EE P E VEE E+ +
Sbjct: 1734 VEGSNPKGMLEEVIPEEVVEEVIPKEIVEEEVPEELV 1770
Score = 37 (13.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 9/22 (40%), Positives = 12/22 (54%), Frame = +1
Query: 307 EQKPEENKPAETVEETQTEQFL 372
E+ EE P E VEE E+ +
Sbjct: 1695 EELVEEVVPEELVEEVIPEELI 1716
Score = 37 (13.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E VEE E+ +
Sbjct: 1021 VPEEIIEEKIPEEIVEEEIHEEIV 1044
Score = 37 (13.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E+ EE P E +EE E+ +
Sbjct: 1863 VTEEVIEEVIPEEVIEEVIPEELV 1886
Score = 37 (13.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFLV 375
V E+ EE P VEE E+ +V
Sbjct: 1592 VPEELVEEVVPEGLVEEVVPEELVV 1616
Score = 37 (13.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 12/27 (44%), Positives = 14/27 (51%), Frame = +1
Query: 301 VEEQKPE---ENKPAETVEETQTEQFL 372
VEE PE E P E VEE E+ +
Sbjct: 1356 VEEVVPEVVEEVVPEELVEEVIPEELV 1382
Score = 37 (13.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 12/28 (42%), Positives = 14/28 (50%), Frame = +1
Query: 301 VEEQKPEENK----PAETVEETQTEQFL 372
VEE PEE P E VEE E+ +
Sbjct: 1671 VEEVLPEEVVKEVIPEEVVEEVLPEELV 1698
Score = 37 (13.0 bits), Expect = 0.012, Sum P(2) = 0.012
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V E+ EE P E VEE E+
Sbjct: 917 VPEELVEEVIPEEVVEEIIPEE 938
Score = 37 (13.0 bits), Expect = 0.30, Sum P(2) = 0.26
Identities = 9/21 (42%), Positives = 11/21 (52%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTE 363
+ E+ EE P E VEE E
Sbjct: 828 IPEEVVEEVIPEEVVEEVPEE 848
Score = 36 (12.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 9/17 (52%), Positives = 10/17 (58%), Frame = +1
Query: 301 VEEQKPEENKPAETVEE 351
V E+ EE P E VEE
Sbjct: 1503 VPEELVEEVVPEEVVEE 1519
Score = 36 (12.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/21 (47%), Positives = 11/21 (52%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTE 363
V E+ EE P E VEE E
Sbjct: 1278 VPEELVEEVIPEEIVEEVVEE 1298
Score = 36 (12.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/21 (47%), Positives = 11/21 (52%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTE 363
V E+ EE P E VEE E
Sbjct: 1924 VPEELVEEVIPEEIVEEVVEE 1944
Score = 36 (12.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQFL 372
V E + EE P E +EE E+ +
Sbjct: 1458 VPEVEIEEILPEELIEELIPEEII 1481
Score = 36 (12.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/28 (46%), Positives = 13/28 (46%), Frame = +1
Query: 292 PAPVEEQKPEENK----PAETVEETQTE 363
P VEE PEE P E VEE E
Sbjct: 1361 PEVVEEVVPEELVEEVIPEELVEEVIPE 1388
Score = 36 (12.7 bits), Expect = 0.37, Sum P(2) = 0.31
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = +1
Query: 301 VEEQKPEENKPAETVEETQTEQ 366
V QK E P E +EE TE+
Sbjct: 775 VVAQKIVEVIPEELIEEVITEK 796
>gi|12644358|sp|P80544|MRSP_STAAU METHICILLIN-RESISTANT SURFACE PROTEIN
PRECURSOR >gi|4185565|gb|AAD09131.1| (AF115379) surface protein Pls
[Staphylococcus aureus]
Length = 1637
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): _ __ __ __
__________________________________________________
Database sequence: | | | | | 1637
0 500 1000 1500
Plus Strand HSPs:
Score = 118 (41.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 38/101 (37%), Positives = 51/101 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVT---TTEE-PK-EETTKEAKEE--- 160
E A++T TE EA + + ++ T E P T+ T TTEE P EET+K A EE
Sbjct: 141 EAPKAEETDKATTE-EAPKAEETDKATEEAPKTEETDKATTEEAPAAEETSKAATEEAPK 199
Query: 161 --EEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKEETK 280
E + T EA + E K EE P E T++ E +E K
Sbjct: 200 AEETSKAATEEAPKAEETEKTATEEAPKTEETDKVETEEAPK 241
Score = 115 (40.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 39/93 (41%), Positives = 47/93 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTT---TEE-PKEETTKEAKEEEEAP 172
E A++T E TE T + TT E PA + T+ TEE PK E T +A EE
Sbjct: 155 EAPKAEETDKATEEAPKTEETD-KATTEEAPAAEETSKAATEEAPKAEETSKAATEEAPK 213
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
E E T TEE P+ EE E TEE EET +
Sbjct: 214 AEETEKT-ATEEA-PKTEETDKVE-TEEAPKAEETSK 247
Score = 115 (40.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 36/94 (38%), Positives = 48/94 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTEN--EATEVTKIE-ETTPEQPATQVTTTEE-PKEETTKEAKEEEEAP 172
E A++T TE +A E +K E P+ T+ T TEE PK E T + E EEAP
Sbjct: 182 EAPAAEETSKAATEEAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDKV-ETEEAP 240
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
+ E ++ E P+ EE E TEE EET +
Sbjct: 241 -KAEETSKAATEKAPKAEETNKVE-TEEAPAAEETNK 275
Score = 115 (40.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 40/110 (36%), Positives = 49/110 (44%), Frame = +2
Query: 5 EVEVAQQTPTTVTEN----EATEVTKIEETTPEQPATQVTTTEEPK-EETTKEAKE---- 157
E A++T TE E TE T EE + +V T E PK EET+K A E
Sbjct: 196 EAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDKVETEEAPKAEETSKAATEKAPK 255
Query: 158 -EEEAPVETNEATEVTEEVKPEVEENPAPERTEEEELKE----ETKETRI 292
EE VET EA E K EE PA E T + ET+ T++
Sbjct: 256 AEETNKVETEEAPAAEETNKAATEETPAVEDTNAKSNSNAQPSETERTQV 305
Score = 114 (40.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 38/97 (39%), Positives = 45/97 (46%), Frame = +2
Query: 11 EVAQQTPTTVTENEA--TEVTKIEETTPEQPATQVTTTEEPK-EETTKEAKEEEEAPVET 181
E A T TE +A TE EE + +V T E PK EET K EE ET
Sbjct: 103 EKANTTEQASTEEKADTTEQATTEEAPKAEGTDKVETEEAPKAEETDKATTEEAPKAEET 162
Query: 182 NEATEV---TEEV-KPEVEENPAPERTEEEELKEETK 280
++ATE TEE K EE PA E T + +E K
Sbjct: 163 DKATEEAPKTEETDKATTEEAPAAEETSKAATEEAPK 199
Score = 112 (39.4 bits), Expect = 0.00044, P = 0.00044
Identities = 42/118 (35%), Positives = 51/118 (43%), Frame = +2
Query: 11 EVAQQTPTTVTENEA--TEVTKIEETTPEQPATQVTTTEEPK-EETTKEAKEEEEAPVET 181
E A T TE +A TE EE + +V T E PK EET K EE ET
Sbjct: 103 EKANTTEQASTEEKADTTEQATTEEAPKAEGTDKVETEEAPKAEETDKATTEEAPKAEET 162
Query: 182 NEATEV---TEEV-KPEVEENPAPERT-----EEEELKEETKETRIQHQWRNRSQRRT 328
++ATE TEE K EE PA E T EE EET + + + +T
Sbjct: 163 DKATEEAPKTEETDKATTEEAPAAEETSKAATEEAPKAEETSKAATEEAPKAEETEKT 220
Score = 108 (38.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 36/91 (39%), Positives = 48/91 (52%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEE-PKEETTKEAKEEEEAPV-- 175
+V+V + T + E T+ T + T+ TTEE PK E T + E EEAP
Sbjct: 88 QVDVTKDTTEQASTEEKANTTEQASTEEKADTTEQATTEEAPKAEGTDKV-ETEEAPKAE 146
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEEELKEET 277
ET++AT TEE P+ EE + TEE EET
Sbjct: 147 ETDKAT--TEEA-PKAEETD--KATEEAPKTEET 175
Score = 108 (38.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 39/94 (41%), Positives = 51/94 (54%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEE-TTPEQPATQVT---TTEEPK-EETTKEAKEEEEA 169
E A+ T TE EA + + ++ TT E P + T T E PK EET K EE A
Sbjct: 127 EAPKAEGTDKVETE-EAPKAEETDKATTEEAPKAEETDKATEEAPKTEETDKATTEEAPA 185
Query: 170 PVETNEATEVTEEVKPEVEENPAPERTEEEELKEETKET 286
ET++A TEE P+ EE + TEE EET++T
Sbjct: 186 AEETSKAA--TEEA-PKAEET-SKAATEEAPKAEETEKT 220
Score = 105 (37.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 36/106 (33%), Positives = 53/106 (50%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQ--VTTTE----EPKEETTKEAKEEEEA 169
V+ +Q+ E++ E + + T EQ +T+ TTE E K +TT++A EE A
Sbjct: 70 VQTIEQSSANSNESDIPEQVDVTKDTTEQASTEEKANTTEQASTEEKADTTEQATTEE-A 128
Query: 170 P-------VETNEATEVTEEVKPEVEENPAPERTEEE-ELKEETKET 286
P VET EA + E K EE P E T++ E +T+ET
Sbjct: 129 PKAEGTDKVETEEAPKAEETDKATTEEAPKAEETDKATEEAPKTEET 175
Score = 92 (32.4 bits), Expect = 0.49, Sum P(2) = 0.39
Identities = 24/91 (26%), Positives = 42/91 (46%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
V+ +Q+ E++ E + + T EQ +T+ + T ++A E+A E
Sbjct: 70 VQTIEQSSANSNESDIPEQVDVTKDTTEQASTEEKANTTEQASTEEKADTTEQATTEEAP 129
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETK 280
E T++V E EE P E T++ +E K
Sbjct: 130 KAEGTDKV--ETEEAPKAEETDKATTEEAPK 158
Score = 85 (29.9 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Frame = +2
Query: 5 EVEVAQQTPTTVTEN--EATEVTKIE-ETTPEQPATQVTTTEE-PKEETTKEAKEEEEAP 172
E A++T TE +A E K+E E P T TEE P E T P
Sbjct: 238 EAPKAEETSKAATEKAPKAEETNKVETEEAPAAEETNKAATEETPAVEDTNAKSNSNAQP 297
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKE 271
ET E T+V + V ++ + E+ E+++
Sbjct: 298 SET-ERTQVVDTVAKDLYKKSEVTEAEKAEIEK 329
Score = 40 (14.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 9/26 (34%), Positives = 13/26 (50%), Frame = +1
Query: 283 NPNPAPVEEQKPEENKPAETVEETQT 360
NP+ P EE+ +E + E T T
Sbjct: 806 NPDLKPGEEKVTQEGQTGEKTTTTPT 831
Score = 40 (14.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 9/26 (34%), Positives = 13/26 (50%), Frame = +1
Query: 283 NPNPAPVEEQKPEENKPAETVEETQT 360
NP+ P EE+ +E + E T T
Sbjct: 934 NPDLKPGEEKVTQEGQTGEKTTTTPT 959
Score = 40 (14.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 9/26 (34%), Positives = 13/26 (50%), Frame = +1
Query: 283 NPNPAPVEEQKPEENKPAETVEETQT 360
NP+ P EE+ +E + E T T
Sbjct: 1062 NPDLKPGEEKVTQEGQTGEKTTTTPT 1087
Score = 38 (13.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 9/27 (33%), Positives = 12/27 (44%), Frame = +1
Query: 286 PNPAPVEEQKPEENKPAETVEETQTEQ 366
P + EE AE E+T TE+
Sbjct: 198 PKAEETSKAATEEAPKAEETEKTATEE 224
Score = 36 (12.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 9/24 (37%), Positives = 12/24 (50%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTEQ 366
A E K EE + T E +TE+
Sbjct: 207 ATEEAPKAEETEKTATEEAPKTEE 230
>gi|128127|sp|P19246|NFH_MOUSE NEUROFILAMENT TRIPLET H PROTEIN (200 KDA
NEUROFILAMENT PROTEIN) (NEUROFILAMENT HEAVY POLYPEPTIDE) (NF-H)
>gi|71550|pir||QFMSH neurofilament triplet H protein - mouse
>gi|387493|gb|AAA39813.1| (M24496) neurofilament largest subunit
[Mus musculus]
Length = 1087
Frame 2 hits (HSPs): _____ _____________
Frame 1 hits (HSPs): __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | | 1087
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
DOMO DM00061: INTERMEDIATEFILAMENTS 63..427
DOMO DM04498: 429..715
DOMO DM04498: 716..1085
Entrez Domain: HEAD. 1..97
Entrez Domain: ROD. 98..408
Entrez Domain: TAIL. 409..1087
Entrez Domain: GLU-RICH (ACIDIC). 436..517
Entrez Domain: 50 X 6 AA TANDEM REPEATS OF K-S- 519..886
Entrez Domain: GLU/LYS-RICH. 887..1087
Entrez Domain: COIL 1A. 98..129
Entrez Domain: LINKER 1. 130..141
Entrez Domain: COIL 1B. 142..239
Entrez Domain: LINKER 12. 240..261
Entrez Domain: COIL 2A. 262..283
Entrez Domain: LINKER 2. 284..287
Entrez Domain: COIL 2B. 288..408
PFAM filament: Intermediate filament proteins 93..407
PRODOM PD020183: NFH(2) O35482(1) 1..43
PRODOM PD002961: NFL(7) NFM(4) AINX(3) 45..109
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 111..344
PRODOM PD005641: NFM(4) AINX(2) NFH(2) 346..382
PRODOM PD000194: DESM(8) VIME(8) NFL(7) 384..415
PRODOM PD151880: NFH(2) O35482(1) 417..451
PRODOM PD019053: NFH(4) O35482(1) P71492(1) 496..546
PRODOM PD000540: H1(18) O76786(11) TONB(10) 548..734
PRODOM PD019053: NFH(4) O35482(1) P71492(1) 737..768
PRODOM PD000540: H1(18) O76786(11) TONB(10) 789..998
PRODOM PD189088: NFH(1) O35482(1) 1011..1086
__________________
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 29/91 (31%), Positives = 41/91 (45%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
++V + V E E +E T E T+ T EE KE +E +E EE E E
Sbjct: 431 IKVKSEEMIKVVEKSEKETVIVEGQTEEIRVTEGVTEEEDKEAQGQEGEEAEEG--EEKE 488
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETK 280
E+ P EE +PE+ + +KEE K
Sbjct: 489 EEELAAATSPPAEEAASPEKETKSRVKEEAK 519
Score = 104 (36.6 bits), Expect = 0.0040, P = 0.0040
Identities = 44/148 (29%), Positives = 62/148 (41%), Frame = +2
Query: 5 EVEVAQQTPTT-VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE------- 160
E E TP T E++ E K E P+ + T TE+PK+ T + KEE
Sbjct: 901 EEEKTLPTPKTEAKESKKDEAPK-EAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKA 959
Query: 161 ----EEAPVETN---EAT--EVTEEVKPEVEENPAPERTEEEELKEETKETR--IQHQWR 307
EE P + EA E TE K E E+ A E ++ E ++ KE +
Sbjct: 960 VASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKD 1019
Query: 308 NRSQRRTNQLKPLRKPKQNNFLFEKDWKL 394
+ ++ T KP KPK + E D L
Sbjct: 1020 TKEEKTTESRKPEEKPKMEAKVKEDDKSL 1048
Score = 100 (35.2 bits), Expect = 0.037, P = 0.036
Identities = 35/124 (28%), Positives = 55/124 (44%), Frame = +2
Query: 59 EVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAP----VETNEAT-----EVTEEV 211
+V E TP Q V T P E+ AKE+ ++P +T+E EV V
Sbjct: 828 DVKSPEAQTPVQEEATVPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPV 887
Query: 212 KPEVEENPAPERTEEEEL----KEETKETRIQHQWRNRSQRRTNQLK--PLRKPKQNNFL 373
K EV+ P++ EEE+ K E KE++ + + + + K P KPK +
Sbjct: 888 KEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAE 947
Query: 374 FEKD 385
+K+
Sbjct: 948 AKKE 951
Score = 100 (35.2 bits), Expect = 0.037, P = 0.036
Identities = 38/128 (29%), Positives = 64/128 (50%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEE-------TTPEQPATQVTTTEEPK-EETTKEAKEE 160
+VE ++TPT ++ E K E + E+ ++ EE K +E T+ K E
Sbjct: 929 KVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTE 988
Query: 161 EEAPVETNEATEVTEEVKPEVEENPA-PER--TEEEELKEETK-ETRIQHQWRNRSQRRT 328
E + E ++ TE KP+ EE PA PE+ T+EE+ E K E + + + + + ++
Sbjct: 989 AE-DTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKS 1047
Query: 329 NQLKPLRKPK 358
+P KPK
Sbjct: 1048 LSKEP-SKPK 1056
Score = 97 (34.1 bits), Expect = 0.12, P = 0.11
Identities = 32/104 (30%), Positives = 48/104 (46%), Frame = +2
Query: 5 EVEVAQQTPTT-VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEE---EEAP 172
E E TP T E++ E K E P+ + T TE+PK+ T + KEE ++
Sbjct: 901 EEEKTLPTPKTEAKESKKDEAPK-EAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKA 959
Query: 173 VETNEATE----VTEEVKPEVEENPAPERTEEEELKEETKETRIQ 295
V + E T V EE KP+ + E+ + KE +K T +
Sbjct: 960 VASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETE 1004
Score = 97 (34.1 bits), Expect = 0.12, P = 0.11
Identities = 35/126 (27%), Positives = 56/126 (44%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEAT----- 193
P V EA + E T P T + E+ K ++AK E+ +T+E
Sbjct: 826 PLDVKSPEAQTPVQEEATVP----TDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 881
Query: 194 EVTEEVKPEVEENPAPERTEEEEL----KEETKETRIQHQWRNRSQRRTNQLK--PLRKP 355
EV VK EV+ P++ EEE+ K E KE++ + + + + K P KP
Sbjct: 882 EVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKP 941
Query: 356 KQNNFLFEKD 385
K + +K+
Sbjct: 942 KDSTAEAKKE 951
Score = 92 (32.4 bits), Expect = 0.68, P = 0.49
Identities = 29/78 (37%), Positives = 41/78 (52%), Frame = +2
Query: 50 EATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKPEVE 226
E TE TK E E T + ++ T TE+PK+E A E+++ E + TE KPE
Sbjct: 980 EKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEE-----KTTESRKPE-- 1032
Query: 227 ENPAPERTEEEELKEETKE 283
E P E +E+ K +KE
Sbjct: 1033 EKPKMEAKVKEDDKSLSKE 1051
Score = 89 (31.3 bits), Expect = 1.7, P = 0.82
Identities = 33/119 (27%), Positives = 61/119 (51%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEA--TEVTKIEETTPEQPATQVTTTE-EPKEETTKEAKEEEEAPV 175
EV+ A++ P V E + T T+ +E+ ++ + + E K+ET E ++ A
Sbjct: 890 EVK-AKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEA 948
Query: 176 ETNEATEVTEEVKPEVEENPAPERTEEE-ELKEETKETRIQHQWRNRSQRRTNQLKPLRK 352
+ EA E + V E EE PA +EE + KE+T+ T+ + + + + ++ K
Sbjct: 949 KKEEAGEKKKAVASE-EETPAKLGVKEEAKPKEKTETTKTEAE--DTKAKEPSKPTETEK 1005
Query: 353 PKQ 361
PK+
Sbjct: 1006 PKK 1008
Score = 88 (31.0 bits), Expect = 2.3, P = 0.90
Identities = 31/104 (29%), Positives = 50/104 (48%), Frame = +2
Query: 50 EATEVTKIE-ETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVE-TNEATEVTEEVKPE- 220
E TE TK E E T + ++ T TE+PK+E A E+++ E T E+ + E+ K E
Sbjct: 980 EKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEA 1039
Query: 221 -VEEN-------PAPERTEEEELKEETKETRIQHQWRNRSQRRT 328
V+E+ P+ +TE+ E T + Q + + T
Sbjct: 1040 KVKEDDKSLSKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKAT 1083
Score = 40 (14.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 12/27 (44%), Positives = 17/27 (62%), Frame = +1
Query: 292 PAP-VEEQK--PEENKPAETVEETQTEQ 366
P P VEE+K P E KP ++ E + E+
Sbjct: 926 PKPKVEEKKETPTE-KPKDSTAEAKKEE 952
>gi|12720074 ref|XP_001738.2| megakaryocyte stimulating factor [Homo sapiens]
Length = 1404
Frame 2 hits (HSPs): _____________________
Frame 1 hits (HSPs): ____ ___________
__________________________________________________
Database sequence: | | | | 1404
0 500 1000
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 34/88 (38%), Positives = 42/88 (47%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT E T TK TTP++PA TTT+EP T KE +E AP T A
Sbjct: 372 KSAPTTPKEPAPT-TTKSAPTTPKEPAP--TTTKEPAPTTPKEPAPTTTKEPAPTTTKSA 428
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKE 283
+E P + PAP T +E KE
Sbjct: 429 PTTPKEPAPTTPKKPAPT-TPKEPAPTTPKE 458
Score = 110 (38.7 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 33/92 (35%), Positives = 46/92 (50%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEE---TTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVE 178
+A+ TP T + +T +E TTP++PA+ TT +EP T K A +E AP
Sbjct: 328 LAKPTPKAETTTKGPALTTPKEPTPTTPKEPAS--TTPKEPTPTTIKSAPTTPKEPAPTT 385
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
T A +E P + PAP T +E TKE
Sbjct: 386 TKSAPTTPKEPAPTTTKEPAPT-TPKEPAPTTTKE 419
Score = 108 (38.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 34/88 (38%), Positives = 43/88 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE---EEEAPVETNEA 190
+ PTT E T K TTP++PA TT +EP TTKE +E AP T A
Sbjct: 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAPTTTKEPSPTTPKEPAPTTTKSA 530
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKE 283
T+E P ++ AP T +E TKE
Sbjct: 531 PTTTKEPAPTTTKS-APT-TPKEPSPTTTKE 559
Score = 108 (38.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 33/88 (37%), Positives = 44/88 (50%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT + T + TTP++PA TTT++P T KE +E AP +
Sbjct: 567 EPAPTTPKKPAPTTPKEPAPTTPKEPAP--TTTKKPAPTTPKEPAPTTPKETAPTTPKKL 624
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T T E++ P E PAP T EEL T E
Sbjct: 625 TPTTPEKLAPTTPEKPAP--TTPEELAPTTPE 654
Score = 107 (37.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 33/89 (37%), Positives = 44/89 (49%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT T+ A TK TTP++P+ TTT+EP T KE ++ AP E
Sbjct: 528 KSAPTT-TKEPAPTTTKSAPTTPKEPSP--TTTKEPAPTTPKEPAPTTPKKPAPTTPKEP 584
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKET 286
T +E P + PAP T +E KET
Sbjct: 585 APTTPKEPAPTTTKKPAPT-TPKEPAPTTPKET 616
Score = 106 (37.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 33/95 (34%), Positives = 43/95 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVT-----TTEEPKEETTKEAKE--EEEAPVE 178
+ PTT E T + TTP++PA T TT+EP TTK A +E +P
Sbjct: 497 EPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTT 556
Query: 179 TNEATEVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T E T +E P + PAP T +E KE
Sbjct: 557 TKEPAPTTPKEPAPTTPKKPAPT-TPKEPAPTTPKE 591
Score = 104 (36.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 32/88 (36%), Positives = 42/88 (47%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVETNEAT 193
+ PTT E T + TTP++PA TTT+EP TTK A +E AP +
Sbjct: 387 KSAPTTPKEPAPTTTKEPAPTTPKEPAP--TTTKEPAPTTTKSAPTTPKEPAPTTPKKPA 444
Query: 194 EVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T +E P + P P T +E TKE
Sbjct: 445 PTTPKEPAPTTPKEPTP--TTPKEPAPTTKE 473
Score = 102 (35.9 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 29/80 (36%), Positives = 36/80 (45%), Frame = +2
Query: 29 PTTVTENEATEVT-KIEETTPEQPATQVT-----TTEEPKEETTKE---AKEEEEAPVET 181
P + T E T T K TTP++PA T T +EP TTKE +E AP T
Sbjct: 358 PASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTT 417
Query: 182 NEATEVTEEVKPEVEENPAP 241
E T + P + PAP
Sbjct: 418 KEPAPTTTKSAPTTPKEPAP 437
Score = 100 (35.2 bits), Expect = 0.0045, Sum P(2) = 0.0044
Identities = 27/74 (36%), Positives = 36/74 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT T+ A TK TTP++PA TT ++P T KE +E P E
Sbjct: 411 EPAPTT-TKEPAPTTTKSAPTTPKEPAP--TTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 467
Query: 191 TEVTEEVKPEVEENPAP 241
T+E P + PAP
Sbjct: 468 APTTKEPAPTTPKEPAP 484
Score = 99 (34.8 bits), Expect = 0.0091, Sum P(2) = 0.0091
Identities = 32/88 (36%), Positives = 41/88 (46%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVETNE-A 190
+ PTT E T K TTP++PA TT +EP T KE +E AP E A
Sbjct: 426 KSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTPTTPKEPAPTTKEPAPTTPKEPA 483
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKE 283
++ P + PAP T +E TKE
Sbjct: 484 PTAPKKPAPTTPKEPAPT-TPKEPAPTTTKE 513
Score = 97 (34.1 bits), Expect = 0.025, Sum P(2) = 0.025
Identities = 27/76 (35%), Positives = 36/76 (47%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVETNEATEVT 202
PTT E T + TT ++P+ TT +EP TTK A +E AP T A
Sbjct: 492 PTTPKEPAPTTPKEPAPTTTKEPSP--TTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTP 549
Query: 203 EEVKPEVEENPAPERTEE 256
+E P + PAP +E
Sbjct: 550 KEPSPTTTKEPAPTTPKE 567
Score = 97 (34.1 bits), Expect = 0.051, Sum P(2) = 0.050
Identities = 30/91 (32%), Positives = 38/91 (41%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ TPTT E T TP++PA TT +EP T KE +E AP
Sbjct: 655 EPTPTTPEEPAPTTPKAAAPNTPKEPAP--TTPKEPAPTTPKEPAPTTPKETAPTTPKGT 712
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKET 286
T +E P + PAP+ KE T T
Sbjct: 713 APTTLKEPAPTTPKKPAPKELAPTTTKEPTSTT 745
Score = 96 (33.8 bits), Expect = 0.037, Sum P(2) = 0.037
Identities = 27/78 (34%), Positives = 35/78 (44%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
+ PTT E T K TTP++PA TT +EP TTKE +P E
Sbjct: 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAPTTTKEP-----SPTTPKEPAPT 525
Query: 200 TEEVKPEVEENPAPERTE 253
T + P + PAP T+
Sbjct: 526 TTKSAPTTTKEPAPTTTK 543
Score = 96 (33.8 bits), Expect = 0.037, Sum P(2) = 0.037
Identities = 33/90 (36%), Positives = 41/90 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT + T K+ TTPE+PA TT EE T +E EE AP A
Sbjct: 615 ETAPTTPKKLTPTTPEKLAPTTPEKPAP--TTPEELAPTTPEEPTPTTPEEPAPTTPKAA 672
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKET 286
T +E P + PAP T +E KET
Sbjct: 673 APNTPKEPAPTTPKEPAPT-TPKEPAPTTPKET 704
Score = 95 (33.4 bits), Expect = 0.054, Sum P(2) = 0.053
Identities = 28/79 (35%), Positives = 39/79 (49%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
+ PTT T+ A TK TTP++P+ TTT+EP T KE AP +
Sbjct: 528 KSAPTT-TKEPAPTTTKSAPTTPKEPSP--TTTKEPAPTTPKEP-----APTTPKKPAPT 579
Query: 200 T-EEVKPEVEENPAPERTEE 256
T +E P + PAP T++
Sbjct: 580 TPKEPAPTTPKEPAPTTTKK 599
Score = 95 (33.4 bits), Expect = 0.054, Sum P(2) = 0.053
Identities = 32/95 (33%), Positives = 41/95 (43%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQV------TTTEEPKEETTKE---AKEEEEAP 172
+ PTT T+ A TK TTP++PA TT +EP T KE +E AP
Sbjct: 411 EPAPTT-TKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAP 469
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
A +E P + PAP T +E KE
Sbjct: 470 TTKEPAPTTPKEPAPTAPKKPAPT-TPKEPAPTTPKE 505
Score = 93 (32.7 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 29/85 (34%), Positives = 37/85 (43%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQP-ATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVT- 202
P T E T +ET P P T TT +EP T K+ +E AP T E T T
Sbjct: 688 PAPTTPKEPAPTTP-KETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTC 746
Query: 203 EEVKPEVEENPAPERTEEEELKEETKE 283
++ P + AP T +E KE
Sbjct: 747 DKPAPTTPKGTAPT-TPKEPAPTTPKE 772
Score = 92 (32.4 bits), Expect = 0.18, Sum P(2) = 0.16
Identities = 28/81 (34%), Positives = 36/81 (44%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT E T K TTP++PA TT +E T K+ E+ AP +
Sbjct: 583 EPAPTTPKEPAPTTTKKPAPTTPKEPAP--TTPKETAPTTPKKLTPTTPEKLAPTTPEKP 640
Query: 191 TEVT-EEVKPEVEENPAPERTEE 256
T EE+ P E P P EE
Sbjct: 641 APTTPEELAPTTPEEPTPTTPEE 663
Score = 90 (31.7 bits), Expect = 0.38, Sum P(2) = 0.32
Identities = 31/88 (35%), Positives = 40/88 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE----AKE------EEEA 169
+ PTT E T K TTP++PA TT +EP T KE KE +E A
Sbjct: 426 KSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTPTTPKEPAPTTKEPAPTTPKEPA 483
Query: 170 PVETNEATEVT-EEVKPEVEENPAPERTEE 256
P + T +E P + PAP T+E
Sbjct: 484 PTAPKKPAPTTPKEPAPTTPKEPAPTTTKE 513
Score = 89 (31.3 bits), Expect = 0.52, Sum P(2) = 0.41
Identities = 31/88 (35%), Positives = 43/88 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEA-----KE------EEE 166
+ PTT T+ A TK TTP++P+ TTT+EP T KE K+ +E
Sbjct: 528 KSAPTT-TKEPAPTTTKSAPTTPKEPSP--TTTKEPAPTTPKEPAPTTPKKPAPTTPKEP 584
Query: 167 APVETNE-ATEVTEEVKPEVEENPAPERTEE 256
AP E A T++ P + PAP +E
Sbjct: 585 APTTPKEPAPTTTKKPAPTTPKEPAPTTPKE 615
Score = 87 (30.6 bits), Expect = 1.1, Sum P(2) = 0.66
Identities = 29/88 (32%), Positives = 41/88 (46%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT E T + TTP++PA TT ++P T KE +E AP T +
Sbjct: 543 KSAPTTPKEPSPTTTKEPAPTTPKEPAP--TTPKKPAPTTPKEPAPTTPKEPAPTTTKKP 600
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T +E P + AP T ++L T E
Sbjct: 601 APTTPKEPAPTTPKETAP--TTPKKLTPTTPE 630
Score = 87 (30.6 bits), Expect = 4.3, P = 0.99
Identities = 35/121 (28%), Positives = 52/121 (42%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQV---TTTEEPKEETT-KEAKE--EEEAPVET 181
+ PTT T + + TTP++PA + TTT+ P T+ K A +E AP
Sbjct: 772 EPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTP 831
Query: 182 NEATEVT-EEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E T ++ P E P P T E TKE H+ + S + +P K
Sbjct: 832 KEPAPTTPKKPAPTTPETPPPT-TSEVSTPTTTKEPTTIHKSPDESTPELSA-EPTPKAL 889
Query: 359 QNN 367
+N+
Sbjct: 890 ENS 892
Score = 86 (30.3 bits), Expect = 1.4, Sum P(2) = 0.76
Identities = 29/84 (34%), Positives = 39/84 (46%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEATEV 199
PTT E T + TTP++PA TT+EP T KE ++ AP E
Sbjct: 445 PTTPKEPAPTTPKEPTPTTPKEPAP---TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPT 501
Query: 200 T-EEVKPEVEENPAPERTEEEELKEETK 280
T +E P + P+P T +E TK
Sbjct: 502 TPKEPAPTTTKEPSPT-TPKEPAPTTTK 528
Score = 43 (15.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 11/25 (44%), Positives = 13/25 (52%), Frame = +1
Query: 292 PAPVEEQKP--EENKPAETVEETQT 360
PAP +KP +E P T E T T
Sbjct: 720 PAPTTPKKPAPKELAPTTTKEPTST 744
Score = 42 (14.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 482 PAPTAPKKPAPTTPKEPAPTTPKE 505
Score = 42 (14.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 568 PAPTTPKKPAPTTPKEPAPTTPKE 591
Score = 42 (14.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 592 PAPTTTKKPAPTTPKEPAPTTPKE 615
Score = 42 (14.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 435 PAPTTPKKPAPTTPKEPAPTTPKE 458
Score = 41 (14.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 8/21 (38%), Positives = 10/21 (47%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEET 354
PAP ++P P ET T
Sbjct: 600 PAPTTPKEPAPTTPKETAPTT 620
Score = 41 (14.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 8/21 (38%), Positives = 10/21 (47%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEET 354
PAP ++P P ET T
Sbjct: 688 PAPTTPKEPAPTTPKETAPTT 708
Score = 40 (14.1 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 10/24 (41%), Positives = 12/24 (50%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P ET T +E
Sbjct: 834 PAPTTPKKPAPTTP-ETPPPTTSE 856
Score = 38 (13.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 7/21 (33%), Positives = 10/21 (47%), Frame = +1
Query: 280 RNPNPAPVEEQKPEENKPAET 342
+ P P +E P +PA T
Sbjct: 457 KEPTPTTPKEPAPTTKEPAPT 477
Score = 38 (13.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P E T E
Sbjct: 490 PAPTTPKEPAPTTPKEPAPTTTKE 513
Score = 38 (13.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P E T E
Sbjct: 680 PAPTTPKEPAPTTPKEPAPTTPKE 703
Score = 38 (13.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P E T E
Sbjct: 443 PAPTTPKEPAPTTPKEPTPTTPKE 466
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 7/21 (33%), Positives = 9/21 (42%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEET 354
PAP ++P P E T
Sbjct: 506 PAPTTTKEPSPTTPKEPAPTT 526
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 7/22 (31%), Positives = 10/22 (45%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQ 357
PAP ++P P E T+
Sbjct: 451 PAPTTPKEPTPTTPKEPAPTTK 472
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/23 (34%), Positives = 9/23 (39%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTE 363
AP +KP P E T E
Sbjct: 633 APTTPEKPAPTTPEELAPTTPEE 655
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P T T E
Sbjct: 765 PAPTTPKEPAPTTPKGTAPTTLKE 788
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/24 (33%), Positives = 8/24 (33%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
P KP P ET T E
Sbjct: 810 PTSTTSDKPAPTTPKETAPTTPKE 833
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 10/25 (40%), Positives = 12/25 (48%), Frame = +1
Query: 292 PAPVEEQKP--EENKPAETVEETQT 360
PAP +KP +E P T T T
Sbjct: 789 PAPTTPKKPAPKELAPTTTKGPTST 813
>gi|5031925 ref|NP_005798.1| megakaryocyte stimulating factor [Homo sapiens]
>gi|1572721|gb|AAB09089.1| (U70136) megakaryocyte stimulating
factor; MSF [Homo sapiens]
Length = 1404
Frame 2 hits (HSPs): _____________________
Frame 1 hits (HSPs): ____ ___________
__________________________________________________
Database sequence: | | | | 1404
0 500 1000
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 34/88 (38%), Positives = 42/88 (47%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT E T TK TTP++PA TTT+EP T KE +E AP T A
Sbjct: 372 KSAPTTPKEPAPT-TTKSAPTTPKEPAP--TTTKEPAPTTPKEPAPTTTKEPAPTTTKSA 428
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKE 283
+E P + PAP T +E KE
Sbjct: 429 PTTPKEPAPTTPKKPAPT-TPKEPAPTTPKE 458
Score = 110 (38.7 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 33/92 (35%), Positives = 46/92 (50%), Frame = +2
Query: 14 VAQQTPTTVTENEATEVTKIEE---TTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVE 178
+A+ TP T + +T +E TTP++PA+ TT +EP T K A +E AP
Sbjct: 328 LAKPTPKAETTTKGPALTTPKEPTPTTPKEPAS--TTPKEPTPTTIKSAPTTPKEPAPTT 385
Query: 179 TNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
T A +E P + PAP T +E TKE
Sbjct: 386 TKSAPTTPKEPAPTTTKEPAPT-TPKEPAPTTTKE 419
Score = 108 (38.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 34/88 (38%), Positives = 43/88 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE---EEEAPVETNEA 190
+ PTT E T K TTP++PA TT +EP TTKE +E AP T A
Sbjct: 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAPTTTKEPSPTTPKEPAPTTTKSA 530
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKE 283
T+E P ++ AP T +E TKE
Sbjct: 531 PTTTKEPAPTTTKS-APT-TPKEPSPTTTKE 559
Score = 106 (37.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 33/95 (34%), Positives = 43/95 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVT-----TTEEPKEETTKEAKE--EEEAPVE 178
+ PTT E T + TTP++PA T TT+EP TTK A +E +P
Sbjct: 497 EPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTT 556
Query: 179 TNEATEVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T E T +E P + PAP T +E KE
Sbjct: 557 TKEPAPTTPKEPAPTTPKKPAPT-TPKEPAPTTPKE 591
Score = 104 (36.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 32/88 (36%), Positives = 42/88 (47%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVETNEAT 193
+ PTT E T + TTP++PA TTT+EP TTK A +E AP +
Sbjct: 387 KSAPTTPKEPAPTTTKEPAPTTPKEPAP--TTTKEPAPTTTKSAPTTPKEPAPTTPKKPA 444
Query: 194 EVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T +E P + P P T +E TKE
Sbjct: 445 PTTPKEPAPTTPKEPTP--TTPKEPAPTTKE 473
Score = 104 (36.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 37/96 (38%), Positives = 46/96 (47%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEA-----KE------EEE 166
+ PTT E T K TTP++PA TT +EP TTK+ KE +E
Sbjct: 559 EPAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPAPTTTKKPAPTAPKEPAPTTPKET 616
Query: 167 APVETNEATEVT-EEVKPEVEENPAPERTEEEELKEETKE 283
AP + T T E++ P E PAP T EEL T E
Sbjct: 617 APTTPKKLTPTTPEKLAPTTPEKPAP--TTPEELAPTTPE 654
Score = 103 (36.3 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 32/88 (36%), Positives = 43/88 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT + T + TTP++PA TTT++P KE +E AP +
Sbjct: 567 EPAPTTPKKPAPTTPKEPAPTTPKEPAP--TTTKKPAPTAPKEPAPTTPKETAPTTPKKL 624
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKE 283
T T E++ P E PAP T EEL T E
Sbjct: 625 TPTTPEKLAPTTPEKPAP--TTPEELAPTTPE 654
Score = 102 (35.9 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 29/80 (36%), Positives = 36/80 (45%), Frame = +2
Query: 29 PTTVTENEATEVT-KIEETTPEQPATQVT-----TTEEPKEETTKE---AKEEEEAPVET 181
P + T E T T K TTP++PA T T +EP TTKE +E AP T
Sbjct: 358 PASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTT 417
Query: 182 NEATEVTEEVKPEVEENPAP 241
E T + P + PAP
Sbjct: 418 KEPAPTTTKSAPTTPKEPAP 437
Score = 102 (35.9 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 32/89 (35%), Positives = 43/89 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT T+ A TK TTP++P+ TTT+EP T KE ++ AP E
Sbjct: 528 KSAPTT-TKEPAPTTTKSAPTTPKEPSP--TTTKEPAPTTPKEPAPTTPKKPAPTTPKEP 584
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKET 286
T +E P + PAP +E KET
Sbjct: 585 APTTPKEPAPTTTKKPAPT-APKEPAPTTPKET 616
Score = 100 (35.2 bits), Expect = 0.0045, Sum P(2) = 0.0044
Identities = 27/74 (36%), Positives = 36/74 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT T+ A TK TTP++PA TT ++P T KE +E P E
Sbjct: 411 EPAPTT-TKEPAPTTTKSAPTTPKEPAP--TTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 467
Query: 191 TEVTEEVKPEVEENPAP 241
T+E P + PAP
Sbjct: 468 APTTKEPAPTTPKEPAP 484
Score = 99 (34.8 bits), Expect = 0.0091, Sum P(2) = 0.0091
Identities = 32/88 (36%), Positives = 41/88 (46%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVETNE-A 190
+ PTT E T K TTP++PA TT +EP T KE +E AP E A
Sbjct: 426 KSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTPTTPKEPAPTTKEPAPTTPKEPA 483
Query: 191 TEVTEEVKPEVEENPAPERTEEEELKEETKE 283
++ P + PAP T +E TKE
Sbjct: 484 PTAPKKPAPTTPKEPAPT-TPKEPAPTTTKE 513
Score = 97 (34.1 bits), Expect = 0.025, Sum P(2) = 0.025
Identities = 27/76 (35%), Positives = 36/76 (47%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKE--EEEAPVETNEATEVT 202
PTT E T + TT ++P+ TT +EP TTK A +E AP T A
Sbjct: 492 PTTPKEPAPTTPKEPAPTTTKEPSP--TTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTP 549
Query: 203 EEVKPEVEENPAPERTEE 256
+E P + PAP +E
Sbjct: 550 KEPSPTTTKEPAPTTPKE 567
Score = 97 (34.1 bits), Expect = 0.051, Sum P(2) = 0.050
Identities = 30/91 (32%), Positives = 38/91 (41%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ TPTT E T TP++PA TT +EP T KE +E AP
Sbjct: 655 EPTPTTPEEPAPTTPKAAAPNTPKEPAP--TTPKEPAPTTPKEPAPTTPKETAPTTPKGT 712
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKET 286
T +E P + PAP+ KE T T
Sbjct: 713 APTTLKEPAPTTPKKPAPKELAPTTTKEPTSTT 745
Score = 96 (33.8 bits), Expect = 0.037, Sum P(2) = 0.037
Identities = 27/78 (34%), Positives = 35/78 (44%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
+ PTT E T K TTP++PA TT +EP TTKE +P E
Sbjct: 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAPTTTKEP-----SPTTPKEPAPT 525
Query: 200 TEEVKPEVEENPAPERTE 253
T + P + PAP T+
Sbjct: 526 TTKSAPTTTKEPAPTTTK 543
Score = 96 (33.8 bits), Expect = 0.037, Sum P(2) = 0.037
Identities = 33/90 (36%), Positives = 41/90 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT + T K+ TTPE+PA TT EE T +E EE AP A
Sbjct: 615 ETAPTTPKKLTPTTPEKLAPTTPEKPAP--TTPEELAPTTPEEPTPTTPEEPAPTTPKAA 672
Query: 191 TEVT-EEVKPEVEENPAPERTEEEELKEETKET 286
T +E P + PAP T +E KET
Sbjct: 673 APNTPKEPAPTTPKEPAPT-TPKEPAPTTPKET 704
Score = 95 (33.4 bits), Expect = 0.054, Sum P(2) = 0.053
Identities = 28/79 (35%), Positives = 39/79 (49%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEV 199
+ PTT T+ A TK TTP++P+ TTT+EP T KE AP +
Sbjct: 528 KSAPTT-TKEPAPTTTKSAPTTPKEPSP--TTTKEPAPTTPKEP-----APTTPKKPAPT 579
Query: 200 T-EEVKPEVEENPAPERTEE 256
T +E P + PAP T++
Sbjct: 580 TPKEPAPTTPKEPAPTTTKK 599
Score = 95 (33.4 bits), Expect = 0.054, Sum P(2) = 0.053
Identities = 32/95 (33%), Positives = 41/95 (43%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQV------TTTEEPKEETTKE---AKEEEEAP 172
+ PTT T+ A TK TTP++PA TT +EP T KE +E AP
Sbjct: 411 EPAPTT-TKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAP 469
Query: 173 VETNEATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
A +E P + PAP T +E KE
Sbjct: 470 TTKEPAPTTPKEPAPTAPKKPAPT-TPKEPAPTTPKE 505
Score = 93 (32.7 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 29/85 (34%), Positives = 37/85 (43%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQP-ATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVT- 202
P T E T +ET P P T TT +EP T K+ +E AP T E T T
Sbjct: 688 PAPTTPKEPAPTTP-KETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTS 746
Query: 203 EEVKPEVEENPAPERTEEEELKEETKE 283
++ P + AP T +E KE
Sbjct: 747 DKPAPTTPKGTAPT-TPKEPAPTTPKE 772
Score = 91 (32.0 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 30/89 (33%), Positives = 38/89 (42%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT E T K+ TTPE+ A TT E+P T +E EE P E
Sbjct: 607 EPAPTTPKETAPTTPKKLTPTTPEKLAP--TTPEKPAPTTPEELAPTTPEEPTPTTPEEP 664
Query: 191 TEVTEEVK-PEVEENPAPERTEEEELKEETKE 283
T + P + PAP T +E KE
Sbjct: 665 APTTPKAAAPNTPKEPAPT-TPKEPAPTTPKE 695
Score = 90 (31.7 bits), Expect = 0.38, Sum P(2) = 0.32
Identities = 31/88 (35%), Positives = 40/88 (45%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE----AKE------EEEA 169
+ PTT E T K TTP++PA TT +EP T KE KE +E A
Sbjct: 426 KSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTPTTPKEPAPTTKEPAPTTPKEPA 483
Query: 170 PVETNEATEVT-EEVKPEVEENPAPERTEE 256
P + T +E P + PAP T+E
Sbjct: 484 PTAPKKPAPTTPKEPAPTTPKEPAPTTTKE 513
Score = 89 (31.3 bits), Expect = 0.52, Sum P(2) = 0.41
Identities = 31/88 (35%), Positives = 43/88 (48%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEA-----KE------EEE 166
+ PTT T+ A TK TTP++P+ TTT+EP T KE K+ +E
Sbjct: 528 KSAPTT-TKEPAPTTTKSAPTTPKEPSP--TTTKEPAPTTPKEPAPTTPKKPAPTTPKEP 584
Query: 167 APVETNE-ATEVTEEVKPEVEENPAPERTEE 256
AP E A T++ P + PAP +E
Sbjct: 585 APTTPKEPAPTTTKKPAPTAPKEPAPTTPKE 615
Score = 87 (30.6 bits), Expect = 1.1, Sum P(2) = 0.66
Identities = 27/81 (33%), Positives = 35/81 (43%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEA 190
+ PTT E T K T P++PA TT +E T K+ E+ AP +
Sbjct: 583 EPAPTTPKEPAPTTTKKPAPTAPKEPAP--TTPKETAPTTPKKLTPTTPEKLAPTTPEKP 640
Query: 191 TEVT-EEVKPEVEENPAPERTEE 256
T EE+ P E P P EE
Sbjct: 641 APTTPEELAPTTPEEPTPTTPEE 663
Score = 87 (30.6 bits), Expect = 4.3, P = 0.99
Identities = 35/121 (28%), Positives = 52/121 (42%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQV---TTTEEPKEETT-KEAKE--EEEAPVET 181
+ PTT T + + TTP++PA + TTT+ P T+ K A +E AP
Sbjct: 772 EPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTP 831
Query: 182 NEATEVT-EEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E T ++ P E P P T E TKE H+ + S + +P K
Sbjct: 832 KEPAPTTPKKPAPTTPETPPPT-TSEVSTPTTTKEPTTIHKSPDESTPELSA-EPTPKAL 889
Query: 359 QNN 367
+N+
Sbjct: 890 ENS 892
Score = 86 (30.3 bits), Expect = 1.4, Sum P(2) = 0.76
Identities = 29/84 (34%), Positives = 39/84 (46%), Frame = +2
Query: 29 PTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNEATEV 199
PTT E T + TTP++PA TT+EP T KE ++ AP E
Sbjct: 445 PTTPKEPAPTTPKEPTPTTPKEPAP---TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPT 501
Query: 200 T-EEVKPEVEENPAPERTEEEELKEETK 280
T +E P + P+P T +E TK
Sbjct: 502 TPKEPAPTTTKEPSPT-TPKEPAPTTTK 528
Score = 85 (29.9 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 29/88 (32%), Positives = 41/88 (46%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKE---AKEEEEAPVETNE- 187
+ PTT E T + TTP++PA TT ++P T KE +E AP T +
Sbjct: 543 KSAPTTPKEPSPTTTKEPAPTTPKEPAP--TTPKKPAPTTPKEPAPTTPKEPAPTTTKKP 600
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETKE 283
A +E P + AP T ++L T E
Sbjct: 601 APTAPKEPAPTTPKETAP--TTPKKLTPTTPE 630
Score = 43 (15.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 11/25 (44%), Positives = 13/25 (52%), Frame = +1
Query: 292 PAPVEEQKP--EENKPAETVEETQT 360
PAP +KP +E P T E T T
Sbjct: 720 PAPTTPKKPAPKELAPTTTKEPTST 744
Score = 42 (14.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 482 PAPTAPKKPAPTTPKEPAPTTPKE 505
Score = 42 (14.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 568 PAPTTPKKPAPTTPKEPAPTTPKE 591
Score = 42 (14.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 592 PAPTTTKKPAPTAPKEPAPTTPKE 615
Score = 42 (14.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P E T E
Sbjct: 435 PAPTTPKKPAPTTPKEPAPTTPKE 458
Score = 41 (14.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 8/21 (38%), Positives = 10/21 (47%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEET 354
PAP ++P P ET T
Sbjct: 600 PAPTAPKEPAPTTPKETAPTT 620
Score = 41 (14.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 8/21 (38%), Positives = 10/21 (47%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEET 354
PAP ++P P ET T
Sbjct: 688 PAPTTPKEPAPTTPKETAPTT 708
Score = 40 (14.1 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 10/24 (41%), Positives = 12/24 (50%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP +KP P ET T +E
Sbjct: 834 PAPTTPKKPAPTTP-ETPPPTTSE 856
Score = 38 (13.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 7/21 (33%), Positives = 10/21 (47%), Frame = +1
Query: 280 RNPNPAPVEEQKPEENKPAET 342
+ P P +E P +PA T
Sbjct: 457 KEPTPTTPKEPAPTTKEPAPT 477
Score = 38 (13.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P E T E
Sbjct: 490 PAPTTPKEPAPTTPKEPAPTTTKE 513
Score = 38 (13.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P E T E
Sbjct: 680 PAPTTPKEPAPTTPKEPAPTTPKE 703
Score = 38 (13.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P E T E
Sbjct: 443 PAPTTPKEPAPTTPKEPTPTTPKE 466
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 7/21 (33%), Positives = 9/21 (42%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEET 354
PAP ++P P E T
Sbjct: 506 PAPTTTKEPSPTTPKEPAPTT 526
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 7/22 (31%), Positives = 10/22 (45%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQ 357
PAP ++P P E T+
Sbjct: 451 PAPTTPKEPTPTTPKEPAPTTK 472
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/23 (34%), Positives = 9/23 (39%), Frame = +1
Query: 295 APVEEQKPEENKPAETVEETQTE 363
AP +KP P E T E
Sbjct: 633 APTTPEKPAPTTPEELAPTTPEE 655
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/24 (33%), Positives = 10/24 (41%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
PAP ++P P T T E
Sbjct: 765 PAPTTPKEPAPTTPKGTAPTTLKE 788
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/24 (33%), Positives = 8/24 (33%), Frame = +1
Query: 292 PAPVEEQKPEENKPAETVEETQTE 363
P KP P ET T E
Sbjct: 810 PTSTTSDKPAPTTPKETAPTTPKE 833
Score = 36 (12.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 10/25 (40%), Positives = 12/25 (48%), Frame = +1
Query: 292 PAPVEEQKP--EENKPAETVEETQT 360
PAP +KP +E P T T T
Sbjct: 789 PAPTTPKKPAPKELAPTTTKGPTST 813
>gi|92538|pir||S02003 neurofilament triplet H protein - rat (fragment)
>gi|57829|emb|CAA32038.1| (X13804) heavy neurofilament polypeptide
(854 AA) [Rattus sp.] >gi|205682|gb|AAA41693.1| (M37227) heavy
neurofilament polypeptide [Rattus norvegicus]
>gi|226233|prf||1502228A heavy neurofilament protein NF H [Rattus
norvegicus]
Length = 854
Frame 2 hits (HSPs): ______ _____________
Frame 1 hits (HSPs): __ _______
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | | 854
0 150 300 450 600 750
__________________
Annotated Domains:
PROSITE IF: Intermediate filaments signature. 166..174
__________________
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 31/91 (34%), Positives = 41/91 (45%), Frame = +2
Query: 8 VEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNE 187
++V + V E E +EE T E + TEE EE KEA+ EEE E E
Sbjct: 203 IKVKSEEKIKVVEKSEKETVIVEEQTEE-----IQVTEEVTEEEDKEAQGEEEE--EAEE 255
Query: 188 ATEVTEEVKPEVEENPAPERTEEEELKEETK 280
E P EE +PE+ + +KEE K
Sbjct: 256 GGEEAATTSPPAEEAASPEKETKSPVKEEAK 286
Score = 107 (37.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 29/80 (36%), Positives = 40/80 (50%), Frame = +2
Query: 41 TENEATEVTKIEETTP--EQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVK 214
+E + V K E+ T E+ ++ TEE EE KEA+ EEE E E E
Sbjct: 207 SEEKIKVVEKSEKETVIVEEQTEEIQVTEEVTEEEDKEAQGEEEE--EAEEGGEEAATTS 264
Query: 215 PEVEENPAPERTEEEELKEETK 280
P EE +PE+ + +KEE K
Sbjct: 265 PPAEEAASPEKETKSPVKEEAK 286
Score = 104 (36.6 bits), Expect = 0.0030, P = 0.0030
Identities = 35/117 (29%), Positives = 59/117 (50%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAP-VETNEATE 196
++ P T ++ K EE ++ A T K +EAK +E+A + E ++
Sbjct: 685 EKEPLTEKPKDSPGEAKKEEAKEKKAAAPEEETPA-KLGVKEEAKPKEKAEDAKAKEPSK 743
Query: 197 VTEEVKPEVEENPA-PERTE-EEELKEETKETRIQHQWRNRSQRRTNQL-KPLRKPKQ 361
+E+ KP+ EE PA PE+ + +EE E+K+ + + R +RRT K L P+Q
Sbjct: 744 PSEKEKPKKEEVPAAPEKKDTKEEKTTESKKREEKPKMEPRPRRRTRAFPKSLANPRQ 801
Score = 100 (35.2 bits), Expect = 0.028, P = 0.028
Identities = 36/113 (31%), Positives = 55/113 (48%), Frame = +2
Query: 38 VTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEAPVETNEATEVTEEVKP 217
V EA K EE ++PA + + E+ K +EAK E+ T + EEVK
Sbjct: 584 VKSPEAKPPAK-EEA--KRPA-DIRSPEQVKSPAKEEAKSPEKEETRTEKVAPKKEEVKS 639
Query: 218 EVEENPA---PERTEEEEL----KEETKETRIQHQWRNRSQRRTNQLKPL-RKPKQN 364
VEE A P++ EEE+ K E KE++ + + + + +PL KPK +
Sbjct: 640 PVEEVKAKEPPKKVEEEKTPATPKTEVKESKKDEAPKEAQKPKAEEKEPLTEKPKDS 696
Score = 93 (32.7 bits), Expect = 0.36, P = 0.30
Identities = 35/118 (29%), Positives = 52/118 (44%), Frame = +2
Query: 20 QQTPTTVTENEATEVTKI--EETTPEQPATQVTTTEEPKEETTKEA---KEEEEAPVETN 184
++ + V E +A E K EE TP P T+V E K+E KEA K EE+ P+
Sbjct: 635 EEVKSPVEEVKAKEPPKKVEEEKTPATPKTEVK--ESKKDEAPKEAQKPKAEEKEPLTEK 692
Query: 185 EATEVTEEVKPEVEENPAPERTEEEELKEETKE-TRIQHQWRNRSQRRTNQLKPLRKPKQ 361
E K E +E A EE K KE + + + + + ++ KPK+
Sbjct: 693 PKDSPGEAKKEEAKEKKAAAPEEETPAKLGVKEEAKPKEKAEDAKAKEPSKPSEKEKPKK 752
Score = 92 (32.4 bits), Expect = 0.51, P = 0.40
Identities = 28/112 (25%), Positives = 47/112 (41%), Frame = +2
Query: 23 QTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEETTKEAKEEEEA-PVETNEATEV 199
Q P + TE K ++ + P+EET + +EEA P E E +
Sbjct: 679 QKPKAEEKEPLTEKPKDSPGEAKKEEAKEKKAAAPEEETPAKLGVKEEAKPKEKAEDAKA 738
Query: 200 TEEVKPEVEENPAPERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKPK 358
E KP +E P E K++TKE + + R ++ + +P R+ +
Sbjct: 739 KEPSKPSEKEKPKKEEVPAAPEKKDTKEEKTTES-KKREEKPKMEPRPRRRTR 790
Score = 90 (31.7 bits), Expect = 0.98, P = 0.62
Identities = 42/127 (33%), Positives = 61/127 (48%), Frame = +2
Query: 5 EVEVAQQTPTT-VTENEATEVTKIEETTPEQPATQVTTTEEPKE---ETTKE-AKEEEEA 169
E E TP T V E++ E K E P+ + TE+PK+ E KE AKE++ A
Sbjct: 654 EEEKTPATPKTEVKESKKDEAPK-EAQKPKAEEKE-PLTEKPKDSPGEAKKEEAKEKKAA 711
Query: 170 -PVETNEAT-EVTEEVKPE--VEENPAPERTEEEELKEETKETRIQ---HQWRNRSQRRT 328
P E A V EE KP+ E+ A E ++ E KE+ K+ + + + ++ T
Sbjct: 712 APEEETPAKLGVKEEAKPKEKAEDAKAKEPSKPSE-KEKPKKEEVPAAPEKKDTKEEKTT 770
Query: 329 NQLKPLRKPK 358
K KPK
Sbjct: 771 ESKKREEKPK 780
Score = 87 (30.6 bits), Expect = 0.93, Sum P(2) = 0.61
Identities = 31/95 (32%), Positives = 45/95 (47%), Frame = +2
Query: 5 EVEVAQQTPTTVTENEATEVTKIEETTPEQPATQVTTTEEPKEET-TKEA-KEEEEAPVE 178
++ +Q + E EA K EET E+ A + + P EE KE K+ EE
Sbjct: 602 DIRSPEQVKSPAKE-EAKSPEK-EETRTEKVAPKKEEVKSPVEEVKAKEPPKKVEEEKTP 659
Query: 179 TNEATEVTEEVKPEV-EENPAPERTEEEELKEETKET 286
TEV E K E +E P+ E+E L E+ K++
Sbjct: 660 ATPKTEVKESKKDEAPKEAQKPKAEEKEPLTEKPKDS 696
Score = 86 (30.3 bits), Expect = 3.2, P = 0.96
Identities = 33/93 (35%), Positives = 47/93 (50%), Frame = +2
Query: 83 TPEQ---PATQVTTTEEPKEETTKEA----KEEEEAPVETNEATEVTEEVKPEVEENPAP 241
+PEQ PA + + E KEET E KEE ++PVE +A E ++V E E+ PA
Sbjct: 605 SPEQVKSPAKEEAKSPE-KEETRTEKVAPKKEEVKSPVEEVKAKEPPKKV--EEEKTPAT 661
Query: 242 ERTEEEELKEETKETRIQHQWRNRSQRRTNQLKPLRKP 355
+TE +E K++ Q + T KP P
Sbjct: 662 PKTEVKESKKDEAPKEAQKPKAEEKEPLTE--KPKDSP 697
Score = 39 (13.7 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Frame = +1
Query: 253 RRRIERGN*RNPNPAPVEEQKPE-ENKPA-----ETVEETQTE 363
+ + E + P+ P E++KP+ E PA +T EE TE
Sbjct: 730 KEKAEDAKAKEPSK-PSEKEKPKKEEVPAAPEKKDTKEEKTTE 771
Score = 37 (13.0 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 7/21 (33%), Positives = 13/21 (61%), Frame = +1
Query: 304 EEQKPEENKPAETVEETQTEQ 366
EE++P KP ++ E + E+
Sbjct: 684 EEKEPLTEKPKDSPGEAKKEE 704
Score = 36 (12.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 8/18 (44%), Positives = 11/18 (61%), Frame = +1
Query: 295 APVEEQKPEENKPAETVE 348
+PVE + P E K TV+
Sbjct: 413 SPVEAKSPAEVKSPVTVK 430
WARNING: HSPs involving 2060 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.86
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.349 0.153 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.299 0.120 0.323 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.358 0.162 0.582
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.158 0.626
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.321 0.128 0.391
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.357 0.162 0.590
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 145 143 10. 73 3 12 22 0.12 33
30 0.11 36
+2 0 146 143 10. 73 3 12 24 0.10 35
30 0.11 36
+1 0 146 144 10. 73 3 12 22 0.12 33
30 0.11 36
-1 0 146 144 10. 73 3 12 22 0.12 33
30 0.11 36
-2 0 146 143 10. 73 3 12 22 0.12 33
30 0.11 36
-3 0 145 142 10. 73 3 12 22 0.12 33
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 2110
No. of states in DFA: 588 (58 KB)
Total size of DFA: 174 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 209.67u 1.15s 210.82t Elapsed: 00:00:42
Total cpu time: 209.93u 1.18s 211.11t Elapsed: 00:00:43
Start: Wed Oct 3 10:29:15 2001 End: Wed Oct 3 10:29:58 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000