proteins
| 45 proteins |
H | COG0746 | Molybdopterin-guanine dinucleotide biosynthesis protein A | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Methanosarcina acetivorans str.C2A (Methanosarcinales | Methanomicrobia) | ||||
| MA1977 | ||||
195 letters (r) 0
0 937 ||| 1 MA4332_2 (195) 3
1 181 | 2 MJ0786 (186)
-59
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MA4332_2
(195 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
MA4332_2 365 e-101
MJ0786 74 1e-13
STM3696 32 0.90
RC0428 31 1.3
FN0660 31 1.4
SMc00637 31 1.5
AGl2256 31 1.6
FN1429 31 2.0
HP0769 30 2.7
PAE1782 30 3.5
YPO3805 30 3.5
RSp1178 30 3.8
TM1138 30 3.8
SPAC17A5.15c 30 3.8
BS_yweB 30 4.0
MJ1268 30 4.1
aq_2001 29 5.7
FN0305 29 6.1
RC0024 29 6.3
STM4232 29 8.2
STM3097 28 8.3
TM0443 28 8.3
YGR180c 28 8.3
AGpA27 28 8.7
SPBC336.15 28 8.7
ECU10g0250 28 9.8
# >MA4332_2
# Length = 195
#
# Score = 365 bits (937), Expect = e-101
# Identities = 195/195 (100%), Positives = 195/195 (100%)
#
# Query: 1 GKKTIAVTPMYESLMGMCGIKDYFVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQHCD 60
# GKKTIAVTPMYESLMGMCGIKDYFVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQHCD
# Sbjct: 1 GKKTIAVTPMYESLMGMCGIKDYFVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQHCD 60
#
# Query: 61 GEILEVRSTTFDDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVK 120
# GEILEVRSTTFDDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVK
# Sbjct: 61 GEILEVRSTTFDDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVK 120
#
# Query: 121 PATDMVSRIVNDLNIRISTDGVLVAPDYGTSGKGVTIGKGAKILVPTHRTVEGDLLERIC 180
# PATDMVSRIVNDLNIRISTDGVLVAPDYGTSGKGVTIGKGAKILVPTHRTVEGDLLERIC
# Sbjct: 121 PATDMVSRIVNDLNIRISTDGVLVAPDYGTSGKGVTIGKGAKILVPTHRTVEGDLLERIC 180
#
# Query: 181 KKYDSILEGLKNFEE 195
# KKYDSILEGLKNFEE
# Sbjct: 181 KKYDSILEGLKNFEE 195
#
#
# >MJ0786
# Length = 186
#
# Score = 74.3 bits (181), Expect = 1e-13
# Identities = 56/196 (28%), Positives = 105/196 (53%), Gaps = 19/196 (9%)
#
# Query: 1 GKKTIAVTPMYESLMGMCGIKDYFVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQ-HC 59
# G I +T MY+ + + G+++Y + N Y ++ D L+++ GY + VK+ +
# Sbjct: 4 GTMKIGITKMYKEIADLIGLEEYEIVNPYNTK-------VDCDFLIISKGYKERVKKLNP 56
#
# Query: 60 DGEILEVRSTTFDDLIEAVSLLAEELPDEVNPK--TVEKTLQKIRETREKYVSSALLVER 117
# + EI EV+S TF DLI+++ EEL K ++K+++ ++ ++ +
# Sbjct: 57 ESEIFEVKSATFMDLIKSL----EELKKLGIGKEGKIDKSIEFLKNKEKEIKKLVKDLNV 112
#
# Query: 118 KVKPATDMVSRIVNDLNIRISTDGVLVAPDYGTSGKGVTIGKGAKILVPTHRTVEGDLLE 177
# KV P T+ + ++V DL + IS +G+L+ PDY GK + I++ TH G L+E
# Sbjct: 113 KVNPKTEFIRKVVEDLGLEISDNGILIIPDYLFDGKNIE----NIIILKTHNYDLG-LVE 167
#
# Query: 178 RICKKYDSILEGLKNF 193
# RI +Y I++ ++ +
# Sbjct: 168 RIEDRYLQIIQSIQKY 183
#
#
# >STM3696
# Length = 334
#
# Score = 32.0 bits (71), Expect = 0.90
# Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 11/76 (14%)
#
# Query: 67 RSTTFDDLIEAVSL------LAEELPDEVNPKTVEKTLQKIRETREKYVSSAL---LVER 117
# R+ T +D+ + L A P V PKTVEK +Q +R T Y+ +AL L R
# Sbjct: 8 RAPTLEDVARSAGLSPMTVSRALNSPQLVRPKTVEKVMQAVRVT--GYIPNALAGGLASR 65
#
# Query: 118 KVKPATDMVSRIVNDL 133
# + K +V +I N++
# Sbjct: 66 RSKLIAVVVPQINNNM 81
#
#
# >RC0428
# Length = 511
#
# Score = 31.2 bits (69), Expect = 1.3
# Identities = 28/101 (27%), Positives = 51/101 (49%), Gaps = 13/101 (12%)
#
# Query: 92 KTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIVNDLNIRISTDGVLVAPDYGTS 151
# K E+TL ++RE + + S ++ K TD ++R++ IR DG++ + Y T
# Sbjct: 320 KYTERTLTELREAQVQTAS----LKEKYNALTDSLNRVI----IRAPVDGIVNSLKYHTI 371
#
# Query: 152 GKGVTIGKGAKILVPTHR--TVEGDLLERICKKYDSILEGL 190
# G ++ G+ + PT+ +E + + K DS+ EGL
# Sbjct: 372 GGVISHGQPIMEISPTNDPLIIEAKVSQ---KNIDSVHEGL 409
#
#
# >FN0660
# Length = 335
#
# Score = 31.2 bits (69), Expect = 1.4
# Identities = 18/65 (27%), Positives = 38/65 (57%), Gaps = 6/65 (9%)
#
# Query: 80 LLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIVNDLNIRIST 139
# LL++E ++PKT + L+ I+E ++K+ + L++ ++ ++V I N + I +
# Sbjct: 159 LLSDEATSALDPKTTKSILELIKEIQQKFSLTVLMITHQM----EVVKEICN--KVAIMS 212
#
# Query: 140 DGVLV 144
# DG +V
# Sbjct: 213 DGRIV 217
#
#
# >SMc00637
# Length = 450
#
# Score = 31.2 bits (69), Expect = 1.5
# Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
#
# Query: 133 LNIRISTDGVLVAPDYGTSGKGVTIGKGAKILVPTHRTVEGDLLERICKKYDSILEGLKN 192
# LN+ G +V D+GT+G G+ +IL R +G + IC++++ + + LKN
# Sbjct: 323 LNVGGEQSGHIVLSDFGTTGDGLV--AALQILAVVKR--QGKTVSEICRRFEPVPQVLKN 378
#
#
# >AGl2256
# Length = 458
#
# Score = 31.2 bits (69), Expect = 1.6
# Identities = 17/62 (27%), Positives = 33/62 (52%), Gaps = 4/62 (6%)
#
# Query: 131 NDLNIRISTDGVLVAPDYGTSGKGVTIGKGAKILVPTHRTVEGDLLERICKKYDSILEGL 190
# ++ N+ G +V DYGT+G G+ ++L R+ G + +C+K++ + + L
# Sbjct: 329 HNFNVGGEQSGHIVLSDYGTTGDGLV--AALQVLAKVKRS--GLTVSEVCRKFEPVPQLL 384
#
# Query: 191 KN 192
# KN
# Sbjct: 385 KN 386
#
#
# >FN1429
# Length = 260
#
# Score = 30.8 bits (68), Expect = 2.0
# Identities = 16/51 (31%), Positives = 27/51 (52%)
#
# Query: 80 LLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIV 130
# LL +E +NPK E + I+ R+K+ + LL+E +K + R+V
# Sbjct: 177 LLLDEPAAGMNPKETEDLMNTIKLIRDKFGIAVLLIEHDMKLVLGICERLV 227
#
#
# >HP0769
# Length = 201
#
# Score = 30.4 bits (67), Expect = 2.7
# Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
#
# Query: 8 TPM--YESLMGMCGIKDYFVANAYRPSKE 34
# TP+ +ES+ +CGIK++ V A P+KE
# Sbjct: 105 TPLVSFESIKALCGIKNFSVTYAKSPTKE 133
#
#
# >PAE1782
# Length = 168
#
# Score = 30.0 bits (66), Expect = 3.5
# Identities = 16/34 (47%), Positives = 20/34 (58%)
#
# Query: 67 RSTTFDDLIEAVSLLAEELPDEVNPKTVEKTLQK 100
# R+T FD+ V L+A ELP EV PK + L K
# Sbjct: 134 RATRFDEQTVNVELVAVELPKEVLPKRYKLNLVK 167
#
#
# >YPO3805
# Length = 255
#
# Score = 30.0 bits (66), Expect = 3.5
# Identities = 16/50 (32%), Positives = 27/50 (54%)
#
# Query: 80 LLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRI 129
# L+ +E +NPK ++ Q I E R+++ S LL+E +K + RI
# Sbjct: 176 LMLDEPAAGLNPKETDELNQLIMELRDQHQVSVLLIEHDMKLVMGISDRI 225
#
#
# >RSp1178
# Length = 676
#
# Score = 29.6 bits (65), Expect = 3.8
# Identities = 12/35 (34%), Positives = 23/35 (65%)
#
# Query: 72 DDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETRE 106
# DDL++ ++L+ ++P E+ P + L++ RET E
# Sbjct: 353 DDLLDMSAILSGKVPLEIGPVDLADVLERARETIE 387
#
#
# >TM1138
# Length = 284
#
# Score = 29.6 bits (65), Expect = 3.8
# Identities = 14/51 (27%), Positives = 28/51 (54%)
#
# Query: 80 LLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIV 130
# +L +E +NPK E ++ I++ R+ + + LL+E +K + RI+
# Sbjct: 200 ILLDEPAAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERII 250
#
#
# >SPAC17A5.15c
# Length = 716
#
# Score = 29.6 bits (65), Expect = 3.8
# Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
#
# Query: 34 EEISRL-LEADVLVVTAGYLDTVKQHCDGEILEVRSTTFDDLIEAVSL-LAEELPDEVNP 91
# E+++ L ++ DV+ T+ YLDT+ Q+C I ++ D +E + E +P +
# Sbjct: 263 EDVALLGIKPDVVTYTSDYLDTIHQYCVDMIKSGQAYADDTDVETMRHERTEGIPSKHRD 322
#
# Query: 92 KTVEKTLQKIRE 103
# + +E++L+ + E
# Sbjct: 323 RPIEESLEILSE 334
#
#
# >BS_yweB
# Length = 424
#
# Score = 29.6 bits (65), Expect = 4.0
# Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 11/87 (12%)
#
# Query: 71 FDDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIV 130
# F D+I LL ++ D + P + +I + ++++VER P T ++I+
# Sbjct: 282 FTDVITNEELLEKDC-DILVPAAIS---NQITAKNAHNIQASIVVERANGPTTIDATKIL 337
#
# Query: 131 NDLNIRISTDGVLVAPDYGTSGKGVTI 157
# N+ GVL+ PD S GVT+
# Sbjct: 338 NE-------RGVLLVPDILASAGGVTV 357
#
#
# >MJ1268
# Length = 191
#
# Score = 29.6 bits (65), Expect = 4.1
# Identities = 16/50 (32%), Positives = 29/50 (58%)
#
# Query: 76 EAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDM 125
# +A L+ +E +++PK E +KI E R+ + + LLVE+ K A ++
# Sbjct: 105 DAEVLMLDEPTAQLSPKLAEVIFEKIIEMRDNFGLTILLVEQNAKRALEI 154
#
#
# >aq_2001
# Length = 441
#
# Score = 29.3 bits (64), Expect = 5.7
# Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
#
# Query: 61 GEILEVRSTTFDDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVK 120
# G+++E TF+++IE VS+ A+ + ++ + KIRE +V S V +VK
# Sbjct: 232 GDVIESAGNTFENVIEGVSISAKRA--GTSEVSISQDFSKIREFLNNFVKSYNEVVSQVK 289
#
# Query: 121 PAT 123
# T
# Sbjct: 290 SLT 292
#
#
# >FN0305
# Length = 336
#
# Score = 29.3 bits (64), Expect = 6.1
# Identities = 26/112 (23%), Positives = 55/112 (48%), Gaps = 7/112 (6%)
#
# Query: 2 KKTIAVTPMYESLMGMCGIKDYFVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQHCDG 61
# KK+ ++ + E M + FV N + + EE++ LL++D++VV D +++
# Sbjct: 56 KKSYEISMLKELAPNMKNVNSVFVDNNFNINYEELA-LLKSDIVVVWDYQNDAIEKLAKL 114
#
# Query: 62 EI--LEVRSTTFDDLIEAVSLLAEELPDEVNPKTVEKTLQKIRETREKYVSS 111
# +I + ++ T +D+ + + LL D +N + + L + KY +S
# Sbjct: 115 KIPAVAIKYGTLEDVQQGIKLLG----DILNRQEKAQKLINYHKDTNKYFAS 162
#
#
# >RC0024
# Length = 164
#
# Score = 28.9 bits (63), Expect = 6.3
# Identities = 24/90 (26%), Positives = 40/90 (43%)
#
# Query: 24 FVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQHCDGEILEVRSTTFDDLIEAVSLLAE 83
# F+ YRP+K+ I L+A +L V L K D +L + +E +
# Sbjct: 17 FLYLVYRPAKKAILNSLDAKILEVQEKVLQAEKLKEDAALLFKHTNAQIKKLETLRSQMI 76
#
# Query: 84 ELPDEVNPKTVEKTLQKIRETREKYVSSAL 113
# E +EV K +++ ++I E E S A+
# Sbjct: 77 EDSNEVTKKIIQEKTKEIEEFLEHKKSDAI 106
#
#
# >STM4232
# Length = 305
#
# Score = 28.9 bits (63), Expect = 8.2
# Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 6/72 (8%)
#
# Query: 93 TVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIVNDLNIRI-----STDGVLVAPD 147
# T EK LQ+ + + A V + D V+R D +++ S+ VLV P
# Sbjct: 163 TTEKDLQQTTTLLDPAKAYAKGVGNSIPDIPDPVARHTTDGVVKLKVKTNSSSSVLVGPL 222
#
# Query: 148 YGTSGKG-VTIG 158
# +G+SG G VT+G
# Sbjct: 223 FGSSGTGPVTVG 234
#
#
# >STM3097
# Length = 138
#
# Score = 28.5 bits (62), Expect = 8.3
# Identities = 21/59 (35%), Positives = 32/59 (53%), Gaps = 9/59 (15%)
#
# Query: 141 GVLVAPDYGTSGKGVTIGK---GAKILVPTHRTVEG----DLLERICKKY--DSILEGL 190
# G L+A D+GT GV IG+ G +P + +G L+ER+ K++ D I+ GL
# Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61
#
#
# >TM0443
# Length = 476
#
# Score = 28.5 bits (62), Expect = 8.3
# Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
#
# Query: 18 CGIKDYFVANAYRPSKEEISRLLEADVLVVTAGYLDTVKQHCDGEILEVRSTTFDDLIEA 77
# C IK Y V R EE+S L G ++ DGEILE+ +DL E
# Sbjct: 142 CSIKAYIVNKMTREFVEELS-------LASGTGMMNIHSLEWDGEILEITGVRKEDLPEI 194
#
# Query: 78 VS 79
# S
# Sbjct: 195 KS 196
#
#
# >YGR180c
# Length = 345
#
# Score = 28.5 bits (62), Expect = 8.3
# Identities = 14/38 (36%), Positives = 23/38 (59%)
#
# Query: 80 LLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVER 117
# LL L + NPK +EK + + E ++Y S++L VE+
# Sbjct: 229 LLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEK 266
#
#
# >AGpA27
# Length = 298
#
# Score = 28.5 bits (62), Expect = 8.7
# Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
#
# Query: 79 SLLAEELPDEVNPKTVEKTLQKIRETREKYVSSALLVERKVKPATDMVSRIVNDLNIR-- 136
# S +AE + D VNP V +RE + VSS +L E + T++ S ++ + +R
# Sbjct: 159 SEIAERIADAVNPGDVSLDDAGVREAVAEAVSS-VLSENETADITNLPSELIEECYVRTL 217
#
# Query: 137 -ISTDGVLVAPDYGTS 151
# +S +++A D G S
# Sbjct: 218 AMSAFNIIIA-DIGAS 232
#
#
# >SPBC336.15
# Length = 910
#
# Score = 28.5 bits (62), Expect = 8.7
# Identities = 20/68 (29%), Positives = 35/68 (51%)
#
# Query: 38 RLLEADVLVVTAGYLDTVKQHCDGEILEVRSTTFDDLIEAVSLLAEELPDEVNPKTVEKT 97
# +L EA V +G +TVK+ + T FDD ++ L +E + D++ K+ +
# Sbjct: 95 QLEEAAVEGYKSGESNTVKEPKELHTATNTETQFDDDRDSTKLSSEYVKDDIVNKSTKGG 154
#
# Query: 98 LQKIRETR 105
# + I+ETR
# Sbjct: 155 VSPIKETR 162
#
#
# >ECU10g0250
# Length = 1141
#
# Score = 28.5 bits (62), Expect = 9.8
# Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
#
# Query: 104 TREKYVSSALLVERKVKPATDMVSRIVNDLNIRISTDGVLVAPDYGTSGKGVTIGKGAKI 163
# T ++ +S + E KP+ V R+ N LN D L++P +G V IGK I
# Sbjct: 786 TDQESMSRPGVNEEFCKPSRGAVLRMKN-LNYNKLDDDGLISPGTRVTGDDVLIGKITPI 844
#
# Query: 164 LVPTHRTVE 172
# L P T E
# Sbjct: 845 LDPERSTKE 853
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.315 0.135 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,634,748
Number of Sequences: 192987
Number of extensions: 871955
Number of successful extensions: 2940
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2911
Number of HSP's gapped (non-prelim): 70
length of query: 195
length of database: 59,019,183
effective HSP length: 104
effective length of query: 91
effective length of database: 38,948,535
effective search space: 3544316685
effective search space used: 3544316685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
S2: 62 (28.5 bits)