Human Mouse Comparison of Sequence
Flanking Polypyrimidine or Polypurine Tracts

ID	Human Sequence (Hs)*	Hs length	Mouse Sequence (Mm)*	Mm length	Dot Plot	Clustal
1	Hs_CENTA1_chr7_715735-722038	6304	Mmus_CENTA1_chr15_revcom_23822117-23822756	642		clustalw
2	Hs_CTNND2_chr5_11867210-11873078	5869	Mmus_CTNND2_chrX_revcom_94266548-94267246	701		clustalw
5	Hs_CD99L2_chrX_149660521-149666274	5754	Mmus_CD99L2_chr2_revcom_29717834-29718557	726		clustalw
8	Hs_DPEP1_chr16_88225935-88231641	5707	Mmus_DPEP1_chr15_41988528-41989036	511		clustalw
20	Hs_DSCAM_chr21_40911226-40916812	5587	Mmus_DSCAM_chr12_62434646-62434766	123		clustalw
21	Hs_LENG4_chr19_59374676-59380261	5586	Mmus_LENG4_chr7random_31793677-31794294	620		clustalw
22	Hs_SLC39A11int7_chr17_68167504-68173078	5575	Mmus_SLC39A11int7_chr11_112930940-112931322	385		clustalw
29	Hs_P2RY8chrXint1up_chrX_1674576-1680096	5521	Mmus_P2RY8chrXint1up_chr11_104418961-104419454	496		clustalw
30	Hs_P2RY8chrYint1up_chrY_1674576-1680096	5521	Mmus_P2RY8chrYint1up_chr11_104418961-104419454	496		clustalw
31	Hs_FLJ31810_chr9_28176712-28182223	5512	Mmus_FLJ31810_chr2_77359976-77360654	681		clustalw
36	Hs_FLJ10916_chr2_88317372-88322853	5482	Mmus_FLJ10916_chr6_revcom_71325820-71328486	2669		clustalw
40	Hs_FNDC3A_chr13_48530995-48536467	5473	Mmus_FNDC3A_chr17_revcom_9329123-9329828	708		clustalw
45	Hs_ETS1_chr11_127957443-127962897	5455	Mmus_ETS1_chr9_revcom_32621993-32623601	1611		clustalw
52	Hs_PCDH11X_chrX_91206421-91211864	5444	Mmus_PCDH11X_chrX_111895444-111896451	1010		clustalw
57	Hs_TMEM16E_chr11_22244789-22250222	5434	Mmus_TMEM16E_chr10_33672811-33673104	296		clustalw
62	Hs_PRDM15_chr21_42146561-42151991	5431	Mmus_PRDM15_chr4_119022578-119023255	680		clustalw
66	Hs_SORCS2_chr4_7566266-7571690	5425	Mmus_SORCS2_chr7_revcom_33307453-33309111	1661		clustalw
68	Hs_TRPM3_chr9_71262590-71268012	5423	Mmus_TRPM3_chr3_revcom_98767875-98768128	256		clustalw
70	Hs_PLXNA4_chr7_131290758-131296177	5420	Mmus_PLXNA4_chr1_37064026-37064627	604		clustalw
72	Hs_PRKCB1int3_chr16_23937291-23942707	5417	Mmus_PRKCB1int3_chrUnrandom_36257747-36258045	301		clustalw
73	Hs_LRBA_chr4_152081519-152086935	5417	Mmus_LRBA_chr17_31637790-31638155	368		clustalw
76	Hs_ALK_chr2_29962930-29968341	5412	Mmus_ALK_chrUnrandom_revcom_28846768-28847358	593		clustalw
77	Hs_MAML3_chr4_141345580-141350991	5412	Mmus_MAML3_chr15_revcom_80110273-80110897	627		clustalw
78	Hs_NOS1_chr12_116219924-116225334	5411	Mmus_NOS1_chrX_90991371-90991872	504		clustalw
79	Hs_CR749794_chr19_16746356-16751766	5411	Mmus_CR749794_chr11_revcom_85106054-85106619	568		clustalw
84	Hs_KIAA0934int2_chr10_511435-516838	5404	Mmus_KIAA0934int2_chr17_9329405-9329735	333		clustalw
85	Hs_PIR_chrX_15208861-15214264	5404	Mmus_PIR_chr13_revcom_114929158-114930000	845		clustalw
86	Hs_PRKCB1int2_chr16_23897879-23903281	5403	Mmus_PRKCB1int2_chr6_revcom_7898470-7898938	471		clustalw
91	Hs_ST3GAL3_chr1_43949784-43955180	5397	Mmus_ST3GAL3_chr2_revcom_139767557-139768361	807		clustalw
93	Hs_DCCint7dw_chr18_48864099-48869494	5396	Mmus_DCCint7dw_chrUnrandom_28846768-28847500	735		clustalw
96	Hs_KIAA1889_chr8_56362129-56367522	5394	Mmus_KIAA1889_chr1_revcom_3469110-3469551	444		clustalw
100	Hs_A2BP1int4_chr16_7217228-7222619	5392	Mmus_A2BP1int4_chr19_36258604-36259112	511		clustalw
101	Hs_SLIT3_chr5_168436564-168441954	5391	Mmus_SLIT3_chr7_revcom_125967946-125968369	426		clustalw
102	Hs_MAP3K15_chrX_19227332-19232722	5391	Mmus_MAP3K15_chrX_revcom_150023208-150023452	247		clustalw
105	Hs_PCCA_chr13_99899558-99904945	5388	Mmus_PCCA_chr16_91545745-91546246	504		clustalw
110	Hs_TBXAS1_chr7_139016048-139021433	5386	Mmus_TBXAS1_chrX_revcom_90991501-90991994	496		clustalw
112	Hs_GRM8_chr7_126246408-126251792	5385	Mmus_GRM8_chr6_revcom_77644107-77644553	449		clustalw
114	Hs_ZNF536_chr19_35563842-35569224	5383	Mmus_ZNF536_chr7_revcom_26057437-26058107	673		clustalw
118	Hs_FLJ33534_chr2_11201582-11206963	5382	Mmus_FLJ33534_chr10_84946265-84947046	784		clustalw
125	Hs_KIRREL3_chr11_126295692-126301068	5377	Mmus_KIRREL3_chr15_revcom_88810207-88811007	803		clustalw
129	Hs_MDS1_chr3_170670391-170675762	5372	Mmus_MDS1_chr19_3449539-3449805	269		clustalw
134	Hs_C22orf1_chr22_42150536-42155903	5368	Mmus_C22orf1_chr6_98103245-98103987	745		clustalw
136	Hs_FLJ16008_chr2_127675572-127680936	5365	Mmus_FLJ16008_chrUnrandom_17286090-17286423	336		clustalw
137	Hs_AK092155_chr5_24178848-24184212	5365	Mmus_AK092155_chr5_revcom_116307755-116308168	416		clustalw
141	Hs_TNN_chr1_171823839-171829199	5361	Mmus_TNN_chr1_revcom_160117456-160119518	2065		clustalw
142	Hs_DLGAP1_chr18_3759592-3764952	5361	Mmus_DLGAP1_chr2random_revcom_46410458-46410850	395		clustalw
147	Hs_AY116215_chr13_39863254-39868611	5358	Mmus_AY116215_chrUnrandom_revcom_28846768-28846946	181		clustalw
149	Hs_BC045737_chr7__revcom_47861972-47867329	5358	Mmus_BC045737_chrUnrandom__revcom_36257765-36579318	321556	match sequence too long**
152	Hs_CRK7_chr17_34906148-34911504	5357	Mmus_CRK7_chr11_97895541-97895775	237		clustalw
154	Hs_C9orf111_chr9_137671224-137676580	5357	Mmus_C9orf111_chr2_139767609-139768400	794		clustalw
156	Hs_PCSK2_chr20_17273933-17279288	5356	Mmus_PCSK2_chr2_143430864-143434360	3499		clustalw
160	Hs_P2RY8chrXint1dw_chrX_1629060-1634413	5354	Mmus_P2RY8chrXint1dw_chr17_revcom_9329257-9329672	418		clustalw
161	Hs_P2RY8chrYint1dw_chrY_1629060-1634413	5354	Mmus_P2RY8chrYint1dw_chr17_revcom_9329257-9329672	418		clustalw
164	Hs_STARD13_chr13_32647341-32652693	5353	Mmus_STARD13_chr5_148572614-148574521	1910		clustalw
171	Hs_DRD3_chr3_115355753-115361101	5349	Mmus_DRD3_chr16_revcom_43678187-43679088	904		clustalw
172	Hs_Beta4GalNAcT4_chr11_362185-367532	5348	Mmus_Beta4GalNAcT4_chr1_43528861-43529632	774		clustalw
178	Hs_SDS_chr12_112294330-112299674	5345	Mmus_SDS_chr5_revcom_117973212-117975780	2571		clustalw
180	Hs_AK094992_chr4_109867917-109873261	5345	Mmus_AK094992_chr3_revcom_131330140-131330904	767		clustalw
187	Hs_AK130123_chr8_25507214-25512557	5344	Mmus_AK130123_chr14_revcom_59589995-59592404	2412		clustalw
188	Hs_SCNN1B_chr16__23281612-23286954	5343	Mmus_SCNN1B_chrUnrandom__17253613-17286392	32782	match sequence too long**
190	Hs_GRIK1_chr21_29851971-29857312	5342	Mmus_GRIK1_chr16_88346159-88354011	7855		clustalw
191	Hs_MGC26733_chr2_98252111-98257451	5341	Mmus_MGC26733_chrUnrandom_36257754-36258046	295		clustalw
193	Hs_OTOA_chr16_21630514-21635853	5340	Mmus_OTOA_chrUnrandom_36257750-36258046	299		clustalw
197	Hs_ADAMTSL2_chr9_133456333-133461670	5338	Mmus_ADAMTSL2_chr1_revcom_10445477-10446036	562		clustalw
198	Hs_PASD1_chrX_150490192-150495528	5337	Mmus_PASD1_chrUnrandom_28846768-28847500	735		clustalw
199	Hs_DNAI2_chr17_69807037-69812372	5336	Mmus_DNAI2_chr7_62495197-62496010	816		clustalw
201	Hs_BX645758_chr19__revcom_53463034-53468368	5335	Mmus_BX645758_chrUnrandom__revcom_36257747-36579098	321354	match sequence too long**
206	Hs_MGC11324_chr4_84854685-84860017	5333	Mmus_MGC11324_chr5_98216542-98219633	3094		clustalw
207	Hs_AK131489_chr19__10017722-10023053	5332	Mmus_AK131489_chrUnrandom__36257747-36579344	321600	match sequence too long**
212	Hs_STIM1_chr11_3870900-3876229	5330	Mmus_STIM1_chrUnrandom_28846768-28847350	585		clustalw
213	Hs_CR749421_chr8_94028491-94033820	5330	Mmus_CR749421_chr1_175620884-175621178	297		clustalw
214	Hs_RPGR_chrX_37899141-37904470	5330	Mmus_RPGR_chrX_8506793-8508647	1857		clustalw
217	Hs_KIAA0934int1_chr10_549859-555187	5329	Mmus_KIAA0934int1_chr7_revcom_78485562-78485853	294		clustalw
218	Hs_DNM2_chr19_10727415-10732743	5329	Mmus_DNM2_chrX_90991403-90991864	464		clustalw
219	Hs_C21orf127_chr21_29168809-29174137	5329	Mmus_C21orf127_chr5_revcom_45780971-45782448	1480		clustalw
222	Hs_ZNF560_chr19__revcom_9096369-9101696	5328	Mmus_ZNF560_chr9__revcom_18814137-19205334	391200	match sequence too long**
223	Hs_ITSN1_chr21_34167729-34173056	5328	Mmus_ITSN1_chrUnrandom_36257747-36258035	291		clustalw
238	Hs_PPP1R16B_chr20_36955324-36960647	5324	Mmus_PPP1R16B_chrX_132702571-132703007	439		clustalw
242	Hs_MARLIN1_chr4_6215766-6221088	5323	Mmus_MARLIN1_chrUnrandom_revcom_36257811-36258045	237		clustalw
255	Hs_KLK6_chr19_56152233-56157552	5320	Mmus_KLK6_chr4_140654157-140654761	607		clustalw
256	Hs_GLT8D2int1dw_chr12_102915550-102920868	5319	Mmus_GLT8D2int1dw_chr4_revcom_56616189-56616441	255		clustalw
261	Hs_STC2_chr5_172657963-172663281	5319	Mmus_STC2_chrX_18991597-18991987	393		clustalw
266	Hs_KCNJ6_chr21_38004126-38009443	5318	Mmus_KCNJ6_chr16_95550640-95556755	6118		clustalw
267	Hs_KIAA1277_chr7_139742121-139747438	5318	Mmus_KIAA1277_chrUnrandom_36257747-36258051	307		clustalw
268	Hs_GPR158_chr10_25567560-25572876	5317	Mmus_GPR158_chr2_revcom_119238592-119239154	565		clustalw
270	Hs_CLMN_chr14_94826695-94832011	5317	Mmus_CLMN_chr12_105817727-105818155	431		clustalw
272	Hs_IMP2_chr3_186863302-186868618	5317	Mmus_IMP2_chr8_revcom_126192997-126193739	745		clustalw
278	Hs_BC040903_chr6_25556427-25561741	5315	Mmus_BC040903_chr13_revcom_23534670-23535536	869		clustalw
286	Hs_AKAP6_chr14_31991076-31996388	5313	Mmus_AKAP6_chr12_105817722-105818167	448		clustalw
291	Hs_DKFZp761D221int3_chr1_66806006-66811317	5312	Mmus_DKFZp761D221int3_chr1_revcom_108797924-108798520	599		clustalw
293	Hs_ARPP21_chr3__35762218-35767529	5312	Mmus_ARPP21_chr13__89419210-89747083	327876	match sequence too long**
294	Hs_LEPR_chr1__revcom_65663241-65668551	5311	Mmus_LEPR_chrUnrandom__revcom_8508093-8668648	160558	match sequence too long**
304	Hs_MRVI1_chr11_10655890-10661198	5309	Mmus_MRVI1_chr16_revcom_90950939-90951126	190		clustalw
310	Hs_SLC2A14_chr12_7868175-7873482	5308	Mmus_SLC2A14_chr6_123372989-123374260	1274		clustalw
311	Hs_PTPRO_chr12_15554703-15560010	5308	Mmus_PTPRO_chr6_137488743-137489389	649		clustalw
313	Hs_ACLY_chr17_37311394-37316700	5307	Mmus_ACLY_chr11_100183990-100187155	3168		clustalw
315	Hs_KCNH7_chr2_163192746-163198052	5307	Mmus_KCNH7_chr2_62783593-62784736	1146		clustalw
316	Hs_PLCB1_chr20_8555926-8561232	5307	Mmus_PLCB1_chr6_143997053-143997396	346		clustalw
320	Hs_RDHE2_chr8_57382687-57387993	5307	Mmus_RDHE2_chr10_61972821-61973223	405		clustalw
326	Hs_LRRC7_chr1_69956884-69962188	5305	Mmus_LRRC7_chrUnrandom_17286108-17286423	318		clustalw
328	Hs_KIAA1804_chr1_229779176-229784480	5305	Mmus_KIAA1804_chrX_revcom_63850770-63851483	716		clustalw
329	Hs_CTNNA3_chr10__revcom_67787853-67793157	5305	Mmus_CTNNA3_chrUnrandom__revcom_36257755-36579314	321562	match sequence too long**
331	Hs_CMYA4_chr17_30523513-30528817	5305	Mmus_CMYA4_chr11_82547160-82550269	3112		clustalw
335	Hs_DLG2_chr11_83888304-83893607	5304	Mmus_DLG2_chrUnrandom_17286088-17286422	337		clustalw
337	Hs_NMBR_chr6_142439264-142444567	5304	Mmus_NMBR_chr10_revcom_14480888-14481403	518		clustalw
339	Hs_C6orf102_chr6_39410220-39415522	5303	Mmus_C6orf102_chr17_40803267-40803532	268		clustalw
341	Hs_TNC_chr9_114908902-114914204	5303	Mmus_TNC_chr1_13603082-13603541	462		clustalw
342	Hs_CPNE8_chr12_37579724-37585025	5302	Mmus_CPNE8_chrUnrandom_36257794-36258044	253		clustalw
345	Hs_ADAMTSL3_chr15_82171894-82177195	5302	Mmus_ADAMTSL3_chr7_69530456-69531023	570		clustalw
349	Hs_CYLN2_chr7__revcom_73207345-73212645	5301	Mmus_CYLN2_chrUnrandom__revcom_36257749-36579236	321490	match sequence too long**
351	Hs_GRIA3_chrX_122320437-122325737	5301	Mmus_GRIA3_chrX_34002251-34003757	1509		clustalw
366	Hs_NPIP_chr16_14926667-14931963	5297	Mmus_NPIP_chr17_23175842-23176412	573		clustalw
371	Hs_A2BP1int3_chr16_6996116-7001411	5296	Mmus_A2BP1int3_chr16_6460741-6461739	1001		clustalw
372	Hs_SDK2_chr17_68893951-68899246	5296	Mmus_SDK2_chr11_113498149-113501231	3085		clustalw
379	Hs_UMOD_chr16_20261646-20266940	5295	Mmus_UMOD_chr7_106767941-106769163	1225		clustalw
381	Hs_HS3ST3B1_chr17_14170836-14176130	5295	Mmus_HS3ST3B1_chr11_revcom_63510795-63511289	497		clustalw
383	Hs_TIAM1_chr21_31502209-31507503	5295	Mmus_TIAM1_chr16_90290638-90293125	2490		clustalw
385	Hs_CDH12_chr5_21913799-21919093	5295	Mmus_CDH12_chr11_41138411-41139108	700		clustalw
390	Hs_HECW1_chr7__revcom_43146249-43151542	5294	Mmus_HECW1_chr11__revcom_113933949-114052635	118689	match sequence too long**
391	Hs_RPESP_chr8__revcom_74184903-74190196	5294	Mmus_RPESP_chr15__revcom_14291502-14625662	334163	match sequence too long**
393	Hs_GPRC5D_chr12_12986437-12991729	5293	Mmus_GPRC5D_chr6_135161011-135166923	5915		clustalw
396	Hs_FLJ43505_chr1_219300933-219306224	5292	Mmus_FLJ43505_chrUnrandom_36257747-36258047	303		clustalw
397	Hs_PRKG1_chr10_53055093-53060384	5292	Mmus_PRKG1_chr9_84468530-84468719	192		clustalw
400	Hs_ASB4_chr7_94786607-94791898	5292	Mmus_ASB4_chr6_5138152-5138633	484		clustalw
403	Hs_FAM20A_chr17_64078644-64083934	5291	Mmus_FAM20A_chr3_revcom_89970567-89970959	395		clustalw
404	Hs_TSSC1_chr2_4876320-4881610	5291	Mmus_TSSC1_chr7_revcom_38020605-38021140	538		clustalw
410	Hs_FLJ34658_chr5_36010231-36015520	5290	Mmus_FLJ34658_chr16_57988247-57990528	2284		clustalw
413	Hs_CACNA1A_chr19_13459923-13465211	5289	Mmus_CACNA1A_chr17_31637805-31638247	445		clustalw
420	Hs_EPHA8_chr1_22668897-22674183	5287	Mmus_EPHA8_chr4_revcom_135389062-135390516	1457		clustalw
423	Hs_CDH7_chr18_61597619-61602905	5287	Mmus_CDH7_chrUnrandom_28846768-28847495	730		clustalw
426	Hs_TRIM2_chr4_154520411-154525697	5287	Mmus_TRIM2_chr7_114531291-114531863	575		clustalw
428	Hs_CALN1_chr7_71113802-71124088	10287	Mmus_CALN1_chrX_90991415-90991864	452		clustalw
433	Hs_MGC10561_chr17_75488897-75494182	5286	Mmus_MGC10561_chr1_83111769-83112202	436		clustalw
436	Hs_TMPRSS4_chr11__revcom_117470212-117475496	5285	Mmus_TMPRSS4_chrUnrandom__revcom_8358977-8759342	400368	match sequence too long**
440	Hs_GPR155_chr2_175142354-175147638	5285	Mmus_GPR155_chr15_revcom_41988672-41988958	289		clustalw
442	Hs_ITGA9_chr3_37525951-37531235	5285	Mmus_ITGA9_chr9_118641389-118641849	463		clustalw
447	Hs_IL28RA_chr1__revcom_24231992-24237275	5284	Mmus_IL28RA_chrUnrandom__revcom_17253592-17286419	32830	match sequence too long**
448	Hs_SOX6_chr11_16107848-16113131	5284	Mmus_SOX6_chrUnrandom_64480372-64480523	154		clustalw
454	Hs_SASH1_chr6_148747739-148753022	5284	Mmus_SASH1_chrUnrandom_36257762-36258045	286		clustalw
455	Hs_WBSCR17_chr7_70587534-70592817	5284	Mmus_WBSCR17_chr1_revcom_43528663-43529626	966		clustalw
458	Hs_C10orf67_chr10_23657612-23662894	5283	Mmus_C10orf67_chr16_revcom_80712729-80713581	855		clustalw
466	Hs_KCNN3_chr1_151538510-151543791	5282	Mmus_KCNN3_chr15_revcom_80110442-80110896	457		clustalw
467	Hs_C10orf64_chr10_49663318-49668599	5282	Mmus_C10orf64_chr14_revcom_29148205-29150798	2596		clustalw
468	Hs_TRPM8_chr2_234615852-234621133	5282	Mmus_TRPM8_chr13_3632525-3632665	143		clustalw
469	Hs_CDH6_chr5_31336072-31341353	5282	Mmus_CDH6_chr15_revcom_12956502-12959240	2741		clustalw
471	Hs_KIAA1166_chrX_63929027-63934308	5282	Mmus_KIAA1166_chrUnrandom_28846768-28847495	730		clustalw
473	Hs_SLC39A11int5_chr17_68405191-68410471	5281	Mmus_SLC39A11int5_chrUnrandom_revcom_36257748-36258044	299		clustalw
474	Hs_CNTNAP5_chr2_125257593-125262873	5281	Mmus_CNTNAP5_chr1_14515532-14515914	385		clustalw
482	Hs_LOC348094_chr15_63028038-63033317	5280	Mmus_LOC348094_chr11_revcom_47372008-47372818	813		clustalw
483	Hs_LAF4_chr2_99698789-99704068	5280	Mmus_LAF4_chrUnrandom_28846776-28847491	718		clustalw
486	Hs_OACT1_chr6_20274264-20279543	5280	Mmus_OACT1_chr13_revcom_29553729-29554337	611		clustalw
488	Hs_ABCA13_chr7_48225328-48230607	5280	Mmus_ABCA13_chr11_9359686-9361399	1716		clustalw
489	Hs_OPHN1int3_chrX__67287420-67292699	5280	Mmus_OPHN1int3_chrUnrandom__17261634-17286395	24764	match sequence too long**
495	Hs_FLJ33167_chr4_185946644-185951922	5279	Mmus_FLJ33167_chrUnrandom_revcom_36257747-36258050	306		clustalw
496	Hs_RIMS1_chr6_72756309-72761587	5279	Mmus_RIMS1_chrUnrandom_revcom_36257747-36258044	300		clustalw
501	Hs_OPN3_chr1_238094385-238099662	5278	Mmus_OPN3_chr17_62807603-62807927	327		clustalw
502	Hs_C10orf39_chr10_133833940-133839217	5278	Mmus_C10orf39_chr14_revcom_109706102-109706406	307		clustalw
503	Hs_M55268_chr16_57000307-57005584	5278	Mmus_M55268_chrUnrandom_revcom_36257749-36258050	304		clustalw
512	Hs_BC069048_chr2_87378416-87383692	5277	Mmus_BC069048_chr12_50701644-50702017	376		clustalw
515	Hs_ZDHHC19_chr3_197422875-197428151	5277	Mmus_ZDHHC19_chrUnrandom_75046846-75048825	1982		clustalw
520	Hs_ANGPT1_chr8_108449039-108454315	5277	Mmus_ANGPT1_chrUnrandom_45835938-45836937	1002		clustalw
526	Hs_ACCN1int1down_chr17_29447779-29453054	5276	Mmus_ACCN1int1down_chr1_revcom_83112081-83112516	438		clustalw
533	Hs_SPATA16_chr3__174158857-174164131	5275	Mmus_SPATA16_chrUnrandom__36257938-36579314	321379	match sequence too long**
537	Hs_PIK3C2G_chr12_18344783-18350056	5274	Mmus_PIK3C2G_chrUnrandom_revcom_17286103-17286415	315		clustalw
540	Hs_RYBP_chr3_72560447-72565720	5274	Mmus_RYBP_chrUnrandom_revcom_36257754-36258045	294		clustalw
545	Hs_CNTNAP2_chr7_146357973-146363246	5274	Mmus_CNTNAP2_chr19_revcom_29552087-29552402	318		clustalw
546	Hs_BC030092_chr11_126652251-126657523	5273	Mmus_BC030092_chr2_revcom_102804908-102805121	216		clustalw
548	Hs_KDELR1_chr19__revcom_53581252-53586524	5273	Mmus_KDELR1_chr7__revcom_13085525-13737646	652124	match sequence too long**
552	Hs_FMOD_chr1_200016671-200021942	5272	Mmus_FMOD_chr6_revcom_98107294-98107713	422		clustalw
562	Hs_CRYBA4_chr22_25345309-25350579	5271	Mmus_CRYBA4_chr13_79457792-79458946	1157		clustalw
563	Hs_APBB2_chr4__revcom_40822631-40827901	5271	Mmus_APBB2_chrUnrandom__revcom_36257726-36579285	321562	match sequence too long**
566	Hs_OPHN1int2_chrX_67422843-67428113	5271	Mmus_OPHN1int2_chrX_90278153-90285462	7312		clustalw
569	Hs_ZIM3_chr19_62338499-62343768	5270	Mmus_ZIM3_chr11_54533005-54533399	397		clustalw
577	Hs_AK098809_chr1_153691397-153696665	5269	Mmus_AK098809_chr3_revcom_88242416-88247317	4904		clustalw
579	Hs_TAIP2_chr2_166346428-166351696	5269	Mmus_TAIP2_chr7_65896893-65899616	2726		clustalw
581	Hs_APXL_chrX_9598262-9603530	5269	Mmus_APXL_chr13_28673929-28674348	422		clustalw
582	Hs_KCNMA1_chr10_78368225-78373492	5268	Mmus_KCNMA1_chr14_19644868-19645835	970		clustalw
583	Hs_BC064553_chr12_11209567-11214834	5268	Mmus_BC064553_chrUnrandom_17286086-17286418	335		clustalw
585	Hs_AQP8_chr16_25132352-25137619	5268	Mmus_AQP8_chr11_33623689-33624171	485		clustalw
586	Hs_WWOX_chr16_77193553-77198820	5268	Mmus_WWOX_chr12_105817231-105818218	990		clustalw
587	Hs_G36737_chr17_30782947-30788214	5268	Mmus_G36737_chr18_86276607-86276887	283		clustalw
588	Hs_CDH22int3_chr20_44283151-44288418	5268	Mmus_CDH22int3_chr2_165216106-165219113	3010		clustalw
599	Hs_ALOXE3_chr17_7949354-7954620	5267	Mmus_ALOXE3_chr11_revcom_68746474-68748561	2090		clustalw
601	Hs_RBMS3_chr3_29878801-29884067	5267	Mmus_RBMS3_chr1_43528728-43529297	572		clustalw
610	Hs_AJ420566_chr6_2358893-2364158	5266	Mmus_AJ420566_chrUnrandom_28846768-28847495	730		clustalw
614	Hs_MATN2_chr8_99072934-99078199	5266	Mmus_MATN2_chrUnrandom_revcom_36257754-36258053	302		clustalw
626	Hs_AK124660_chrX_148313216-148318480	5265	Mmus_AK124660_chrUnrandom_revcom_36257747-36258042	298		clustalw
628	Hs_RGS13_chr1_189339419-189344682	5264	Mmus_RGS13_chr1_revcom_184893113-184893286	176		clustalw
632	Hs_MARCO_chr2_119457824-119463087	5264	Mmus_MARCO_chr2_118299194-118299627	436		clustalw
636	Hs_KIAA0746_chr4__25465968-25471231	5264	Mmus_KIAA0746_chr5__51772774-51875431	102660	match sequence too long**
641	Hs_CACNG3_chr16_24181589-24186851	5263	Mmus_CACNG3_chr5_revcom_116307741-116308201	463		clustalw
644	Hs_CDH22int9_chr20_44241122-44246384	5263	Mmus_CDH22int9_chr2_165181152-165184201	3052		clustalw
645	Hs_FLJ45139_chr21_39207974-39213236	5263	Mmus_FLJ45139_chr4_revcom_119022836-119023100	267		clustalw
649	Hs_AK095548_chr6__revcom_43978204-43983466	5263	Mmus_AK095548_chrUnrandom__revcom_10074945-10473320	398378	match sequence too long**
658	Hs_CAMK1D_chr10_12906708-12911969	5262	Mmus_CAMK1D_chr2random_49334895-49338037	3145		clustalw
662	Hs_AK001558_chr2_12241436-12246697	5262	Mmus_AK001558_chr13_revcom_35136550-35136878	331		clustalw
663	Hs_U72209_chr2_217265010-217270271	5262	Mmus_U72209_chrUnrandom_36257747-36258055	311		clustalw
668	Hs_SRPK2_chr7_104402681-104407942	5262	Mmus_SRPK2_chrUnrandom_36257764-36258056	295		clustalw
669	Hs_CPA6_chr8__revcom_68547976-68553237	5262	Mmus_CPA6_chrUnrandom__revcom_36257754-36579311	321560	match sequence too long**
672	Hs_MGC39827_chr12_118353829-118359089	5261	Mmus_MGC39827_chr5_revcom_113627083-113632306	5226		clustalw
674	Hs_BX648178_chr5_167286048-167291308	5261	Mmus_BX648178_chr11_revcom_36002433-36006130	3700		clustalw
681	Hs_EMR3_chr19__revcom_14605296-14610555	5260	Mmus_EMR3_chrUnrandom__revcom_17261655-17286419	24767	match sequence too long**
690	Hs_AK127997_chr8_38530742-38536001	5260	Mmus_AK127997_chr1_revcom_153156517-153156759	245		clustalw
691	Hs_ATP6V0D2_chr8_87224006-87229265	5260	Mmus_ATP6V0D2_chr9_5253278-5253466	191		clustalw
698	Hs_L3MBTL4_chr18__6059133-6064391	5259	Mmus_L3MBTL4_chrUnrandom__17253716-17286421	32708	match sequence too long**
699	Hs_MY01F_chr19__revcom_8542900-8548158	5259	Mmus_MY01F_chrUnrandom__revcom_36257747-36579309	321565	match sequence too long**
714	Hs_CTNNA2_chr2_80179248-80184505	5258	Mmus_CTNNA2_chr6_revcom_77720874-77723028	2157		clustalw
719	Hs_GLT8D2int3_chr12__102910377-102915633	5257	Mmus_GLT8D2int3_chr11__86381305-86612986	231684	match sequence too long**
723	Hs_OFCC1_chr6_9900862-9906118	5257	Mmus_OFCC1_chr13_39608050-39608911	864		clustalw
727	Hs_FMR2_chrX_147399126-147404382	5257	Mmus_FMR2_chrX_61049746-61052867	3124		clustalw
729	Hs_BC080568_chr1_69892962-69898217	5256	Mmus_BC080568_chr3_revcom_159039054-159039546	495		clustalw
731	Hs_SLC25A21_chr14_36576651-36581906	5256	Mmus_SLC25A21_chr12_52284432-52288775	4346		clustalw
733	Hs_AF289584_chr16_49075093-49080348	5256	Mmus_AF289584_chr15_revcom_34048387-34049067	683		clustalw
734	Hs_AK096990int3dw_chr2_113309968-113315223	5256	Mmus_AK096990int3dw_chrUnrandom_36257747-36258057	313		clustalw
739	Hs_PCDH19_chrX_99391644-99396899	5256	Mmus_PCDH19_chrX_123625063-123625319	259		clustalw
742	Hs_DKFZp761D221int8_chr1_66835221-66840475	5255	Mmus_DKFZp761D221int8_chr5_55216599-55216888	292		clustalw
743	Hs_MCTP2_chr15_92640542-92645796	5255	Mmus_MCTP2_chr7_revcom_59290421-59291068	650		clustalw
745	Hs_CREB3L3_chr19__revcom_4115833-4121087	5255	Mmus_CREB3L3_chrUnrandom__revcom_36257770-36579310	321543	match sequence too long**
748	Hs_PTPRT_chr20_41127501-41132755	5255	Mmus_PTPRT_chr2_162604224-162607541	3320		clustalw
753	Hs_DKFZp434G0625_chr7_131700607-131710861	10255	Mmus_DKFZp434G0625_chr17_73036930-73038040	1113		clustalw
756	Hs_TMEM16A_chr11_69616458-69621711	5254	Mmus_TMEM16A_chrUnrandom_17286097-17286412	318		clustalw
757	Hs_AY358206_chr16__revcom_27895954-27901207	5254	Mmus_AY358206_chrUnrandom__revcom_36257757-36629616	371862	match sequence too long**
761	Hs_AK128329_chr20_61148361-61153614	5254	Mmus_AK128329_chr5_revcom_87254469-87254742	276		clustalw
765	Hs_GLRA1_chr5_151206349-151211602	5254	Mmus_GLRA1_chr18_revcom_38802490-38803711	1224		clustalw
778	Hs_CSTA_chr3_123532545-123537797	5253	Mmus_CSTA_chrUnrandom_36257747-36258047	303		clustalw
779	Hs_SIM1_chr6_100964633-100969885	5253	Mmus_SIM1_chr1_revcom_132059456-132059895	442		clustalw
781	Hs_CAV1_chr7_115786945-115792197	5253	Mmus_CAV1_chrUnrandom_revcom_18027224-18027375	154		clustalw
784	Hs_INO80_chr15_39108398-39113649	5252	Mmus_INO80_chrUnrandom_revcom_8144896-8147460	2567		clustalw
786	Hs_AK096990int3up_chr2_113191120-113196371	5252	Mmus_AK096990int3up_chr10_30574596-30574828	235		clustalw
788	Hs_VEPH1_chr3_158470221-158475472	5252	Mmus_VEPH1_chrUnrandom_2447394-2447837	446		clustalw
791	Hs_UNQ9217_chr5_79867440-79872691	5252	Mmus_UNQ9217_chrUnrandom_12219090-12219742	655		clustalw
796	Hs_PRG2_chr11_56924961-56930211	5251	Mmus_PRG2_chr12_29925508-29925913	408		clustalw
799	Hs_LRFN5_chr14_41317942-41323192	5251	Mmus_LRFN5_chr2_106498050-106498535	488		clustalw
804	Hs_PCDH7_chr4_30731757-30737007	5251	Mmus_PCDH7_chr5_56686098-56686617	522		clustalw
806	Hs_BC041325_chr5_148955519-148960769	5251	Mmus_BC041325_chr7_63919405-63919793	391		clustalw
809	Hs_EMID2_chr7__revcom_100697897-100703147	5251	Mmus_EMID2_chrUnrandom__revcom_17216840-17286392	69555	match sequence too long**
813	Hs_ATRX_chrX_76695981-76701231	5251	Mmus_ATRX_chrX_97251032-97252144	1115		clustalw
814	Hs_COL4A5_chrX_107573413-107578663	5251	Mmus_COL4A5_chr6_revcom_140833777-140834090	316		clustalw
815	Hs_NUP54_chr4_77401496-77406725	5230	Mmus_NUP54_chr16_revcom_33435163-33435565	405		clustalw

* Sequences are in FASTA format and downloaded from genome.ucsc.edu. Repeats denoted by the UC Santa Cruz group from RepeatMasker and Tandem Repeats Finder (with a period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case.

** Threshold = 20Kb

revcom is an abbreviation for reverse complement