Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss11494515	WI_SSAHASNP|chr2.NT_005403.13_20731452		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	07/03/03	04/07/04	116	Genomic			unknown
ss19439919	CSHL-HAPMAP|CSHL-HuDD-200402.chr2.NT_005403.14_20781531		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	02/20/04	03/04/04	120	Genomic			unknown
ss23942512	PERLEGEN|afd4002689		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	08/10/04	09/13/04	123	Genomic			unknown
ss41715956	ABI|hCV2916083		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	07/17/05	07/17/05	126	Genomic			unknown
ss66395802	AFFY|SNP_A-2078209		fwd/B	G/T	accagtgctaggaccc	ctgtgacccactgtac	10/29/06	03/31/08	127	Genomic			unknown
ss66818506	ILLUMINA|HumanHap300v1.1_rs7590594		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	11/09/06	11/09/06	127	Genomic			unknown
ss67803324	ILLUMINA|HumanHap550v1.1_rs7590594		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	11/14/06	11/14/06	127	Genomic			unknown
ss67974353	ILLUMINA|HumanHap650Yv1.0_rs7590594		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	11/14/06	11/15/06	127	Genomic			unknown
ss70936100	ILLUMINA|HumanHap550v3.0__rs7590594		rev/T	A/C	ggtccccgactaatgtacagtgggtcacag	gggtcctagcactggtagatactggtgcag	04/20/07	03/31/08	130	Genomic			unknown
ss71538861	ILLUMINA|HumanHap650Yv3.0_rs7590594		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	04/23/07	04/23/07	127	Genomic			unknown
ss75821901	ILLUMINA|ILMN_Human_1M_rs7590594		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	08/28/07	08/29/07	129	Genomic			unknown
ss76140584	AFFY|AFFY_6_1M_SNP_A-2078209		fwd/B	G/T	accagtgctaggaccc	ctgtgacccactgtac	08/28/07	08/30/07	129	Genomic			unknown
ss79262066	ILLUMINA|HumanHap300v2.0_rs7590594		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	04/18/07	11/18/07	130	Genomic			unknown
ss84685687	KRIBB_YJKIM|KHS779296		fwd/B	G/T	ctgcaccagtatctaccagtgctaggaccc	ctgtgacccactgtacattagtcggggacc	12/04/07	12/07/07	130	Genomic			unknown

Fasta sequence   (Legend)

 GGTTTTTGTT TTACTGTAAT TTAAAACCAT TTGGGGGTCA GCCTTtgtcg tgttcagtgt
 caggttccag cccaactgag ggctgaggga gtgggtggat gtggggcagg gagctggaag
 aacactcgag agacaccagg tagatgagac atggccttat tcagcagccc ccacacctgc
 agctgcatgg ccagctctcc cttggcttca gggtcagtag cttaactgtt tctctgggca
 caagtgagcc aagctgtgtc ctggctcccc caccgtctgt ctgcaaagga cggctctgac
 tctctctccc agtgcaccag cacaacgtca acagggcaat catacatttt acagacaata
 gtggcataga gccaactgat ggccttccca tgtatggcta catggctgtg ataacaagtg
 gagttatatg cctgcgctct aaacctgctg agtcacacag gatgtaaaca tcctacctcg
 gcctatcctt aaccaaagca cagccatgtt ccttacaCTC CACCCCCTAG GCCAAGGGAG
 ACATAGGCCT TGGATACAGG TTATATGCAT AAGCTTTGGG TACATAGGCT TGATATACAC
 ACACAAGGCC TTATACATAA GTTTTGGGCA CACGAGTTTG ATAAACAGGC TTGGCACACA
 GGCCTTACAT tccaccccct ggaatgaggg agttctttta gtggggatcc atgcacatag
 ggcagcaccc tgaactcata ggtcacaaca acaatacaga gaacaacaac ctactataaa
 tattcctgtt acgttaccta tgattattag agcccagcat agggtagtgc ccagaggcac
 ccactgtctc tgcagagggt catcagtaag gtgctcaata gccttaatct cctgtgacac
 cccttgtaaa gctaccatta tgttctagtg gatgtcaggg ataaatgtac aaaattgtgt
 ccctccaagg gcacaggtgc caccctgagc aactgtgact atgtttaagg ccatccgatt
 ttgcagcacc accttcctga tctgatcaac ctcatcagtt agcaaaagga gagcaactcg
 ggtgtaattc agggcccgag ctgtgtgctc tgcaagggct gtaacttgca tttctatagt
 aacgacacct gctccaggga tagttattgc taaggggtgg agccaccaga gggtggcaaa
 aactgggaac gcagtgcctc ccagttattc gggcaactag gcaatgtggg aagcacagtg
 gcaggcacag aaaaccaccc ccaagtaaaa catccagtcc aattggctgg tagatatcgc
 catttggttt atgggcccca cagacccata aactctcagg gggcacaaag tccattggag
 cccagccttg gtaaggccgc ttgttccaca acacccttgg tgtggtgaca tgttatgttt
 gcacaaacct cagcaggcca ccatcccaca gtgacttcac cccagtgctg ctctatgcat
 cgtggtacct gcgatggggg caccacgtgt tctcccatta gccagcccca cccatcatag
 acactacgag tcagccaggg ggcaggcttg ccatgggttt tgcgacaccc cctgtccaaa
 gcctgccgtg ttgcatccca ccaattgtct gtggaaccac aagtttctag tcgtgtccag
 tttttcacag aagctgggtg catgtgccag ggcaagccat ccacagctgc tgctggaagg
 gtagtacaga tccaacagtt ggagacattg gtcacctcag cgtaggtgtg ggcccagtcc
 acaatgcagt tggagcatgc caacctacgg ccagaatgac aaagtaggca cagatactaa
 caagggtaaa tcatgtccct taggccaaat gcaagccaac ttttatctct agataacaat
 gtagctgcca agggcttctg ccctgggtga tggtaccaca ccttatcagc tgcttgtggt
 tcttttgggt cctgtatcca tgccaaagtc acaagggagc tcataatagg ccacacagac
 agtacatatg ttccccccac cagaggaggg ttcctttcct ggctattccc ctacgaacag
 tcaatcatgg aggccacaca ttaaataccc agggaataac atataagtca tactgcagac
 cctcccccaa gggggctatg atagccaacc atctgcagtg aggggcttgg agggtccatg
 gctaacacca ggttttgttt gtttgtttgt ttccctacct ttaggggcat tggggcaggc
 aataacagat tgccgtttgt ccccatacct ggttggagag ggtcatcctt CCtctcatag
 atctggccac atggcctggc cctacatggg ctggtgacta actaattctg taactttcag
 gtaattaacc acaatgttaa gcgttgataa actgcccagc attggtgtag attaccatgg
 gtgtcacctc cttggtgatc ctcatccgtg ttgccctgag ctcaacttat tagctacttt
 gcccactctt ggtatcaaac catataatgt cagtagtagg ctggactgca gcagcaatcc
 aggcagcagc agtactctgg ctagacctgt ctatatatta tgcctcatca ggaatggggc
 cgggggtgcc tcaggctcca tggccttatc ttgcatgagg actacaggcc ctaagacctc
 ttgtaactct gctgctaagg gacttgtatt cagtgtactt cactgctcta agtaggtgcc
 ccactttgat aaagtgctgt cccagtctgt gctgtcccag tctggaaggg tcgctaccca
 tgaacgtagc agccatcctg ctattgggta agtcatctgc atgatgactg tagcctgttc
 tgccatgctc ttatgagtct gaagggcagc atatgcagtt actaactgct tcccagtcca
 gggggtcatt atccatgaac atacccatcc tgctattact aactgcttct ctatcaataa
 agacaagctc agctccatag ttggggccaa aagcctactg gcatactcaa gcactccgtg
 cactgctata ggccctaact gaaactatct gtggtcacat gcacatctag cctaaatggg
 cacctctgat caactaccca tagggcttgt gcctgctaaa tagcctgctt gagatagcca
 ggacagctgt ctcaacctca ccatccaatc ccaggcaaga ggggcattgt cgctttcaaa
 tctgcaagat aatcggaggt taatatgaca ttatcaataa aacgatgaca catggtgggg
 ctatgcatct agccctgcag caacactgtg aaagtccatt gtcatcctcc catgaaggca
 agctgttcgt ggctctctgg agcaatgtca gtggagaaga atgcattatt cacattcatc
 acagagtagt actgtcccag ttccgttgtc aagcggttca tcaaatccat gatggagggt
 acagctgcat gctgagaggg tgttacttta ttcagttccc gataatccac tggtattcgc
 ccagttccat caggctttct gactggccat accagggaat tgtaggggct atgggtgcca
 tgcactattt gcacctcctc taacttctga atagtctcag ttatggctgt atgcccccct
 gacaaacagt attgatgagt ggaggtatcc tgttggggtt gtggcagagc ttgggctggt
 gatgtgtatt gtccctgcag tatcagcttt actgcactaa ctcagagcct gaattctcca
 gccatggtgt gcaagtccag accatgcaaa atgtccactg ccagaatata ttcaggtatg
 agagagacat acacagtgta taggcggaga gccaagtggc tgatgccaag ataaagagac
 acaggtttca ctttcactga ccagctttca tagctggtaa taaatgcagc tctgccagaa
 aacttatccg ggttcccata aactaggctg cagtctgcac cagtatctac cagtgctagg
 accc
 K
 ctgtgaccca ctgtacatta gtcggggacc agcggattac tagcaccaca tacagcctct
 ggttgtctgg ttccccacac cgagctgcat atctcagcca gttccctaat caaacaagaa
 aggctccata tctccgcctg tctgcaaaca gtccttgagt tgcggtgtcc aggcgggagt
 gggttgaaca acattgcttc accccccatt taagcattct ccggaattgc tgctctgggg
 acagttgcct ccaaagagcc aagagcattc cattgggttg cctgttagtt ttctccggag
 caaccccagc tgcaagtaaa tcaatccaca tctgcatgca ggtcacctgc caggctgctt
 tttatcacat gggatggtta tctgcggagg gggcaccttc cccttctttc tggcacgggt
 tccccggtcc agctgatgcc ttctgcctcc cccaggactg ccataacagt agtcacttca
 tgtatgtggc accccacata tggggtgaga acagcagcta gagagtcaaa agcactcggg
 ggcaatgagc ccagcacaag actcctcatg tgcgaggtaa agtgttcatc atctggtccc
 cgggtgttta gatcaaacag cctgctgcat acccagctct cagagtatct gcaccaaatt
 agtatatgac tgccatttac tcacagtttc tggtatcttt ctggcgtcat tccaaacagt
 ccatatggct gccattagcc actcgattaa cgtgtggtca tcctgccctt gtgctaactg
 tccacacagc tgcagctgct gatgaaggga gggatgagtt gtgatagaat ccagcttctc
 cctctcagag gcagagcaag aaatgctgtc agttccctag gatactgccg acactgttta
 cctaattcct gcaactcagt gggggtataa acactataag aggtgtgttc caccactgtg
 tggccagggg ataggggtgg gggtccctgg gctctcccct ggggtcccat cagctgctca
 tggtctatct tctgatggat cacagggcga gcccgcagca gagaagctgc ctcctcctca
 gcatcagacc caatgggagt gtccggccag gaggactggc tgaaggtcgc gctgacagct
 gttgctaact cctgttccag gttgtttatc tgggcctcta agcgccctgc ttgcacatgg
 aggtccctct ccacacaccc caccccccca ccccgcccca ggttttgctc caagctgtgc
 atttgggctc ccgggcactg ggcttgtgcc tgaaagtccc ttacctgtgc tgtgtcctgc
 agggactgag catgaaactc agtttctgac tgaatcagaa acgcccatcc gactctgccg
 gcaaaggtca ttccttcttg gtgctgtgag cttccagatg cttctccaca ctcatgggag
 acccattcac tgcctcccac gtttccactg gggcctaccc gagcagcatc tctgccacgg
 ggtaccacag cccatgctgt ggccacatag ccaacccggg agcctcaggg gctgaagacc
 tactcacctc atcctgctga ctaCACCAAG TATgctcagg gttaggttcc agccccagct
 gagggctgag gggagtgggt ggatgtgggg caggaaactg gaagaacact agagagacag
 caggtagatg agacatggct ttattcagca gcccccacac ctgcagctGC Atggccgtct
 gcaaagacag acagctctga ctctgtcttt ctctgggtgc cagcatgcct gcacagtgtc
 aacagggcat ttatagcttt tacagacaat agtggcgtag agccaagtga tggccttccc
 gtgttttgac tacatggctg tgataacaag tggagttata cgcctgtgct ctaaactcac
 tgagtcacac aggatgtaaa catcctactt tggcctatcc ttgaccaaaa tgcagccata
 tttcttacaG CCTTGTTTGC CATTTCTTAT CATATTAGAT TGTAGACTTG AACTTTACAT
 ATTGCTTAGT TTTCTTGTCT TTGAGGTAAT TTCCTTATCt ggcacgatat tggctcaccg
 caacctctgc ctctggggtt caaacgattc tcctgcctca acctcccaag taggtgggat
 tacaggcatg caccaccgtg cctggctaat tttttttatt tttagtagag acatggtctc
 tccatgttgg tcaggctggt cttaaactcc caacctgaag tgatccaccc gcctaggcct
 cccaaattgc tgggattaca ggcatgaccc accatgcctg gccTATTTTT ATTTTCATAA
 CTCTCCTCTG ACCTACTCAC AGGTCCTCTC TGACCTTCAA AATTGTCCCT GAACCAGACA
 AAGTACTGTA TGCAAGGGTC

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_005403->NM_144711 sv function
Celera	NW_921585->NM_144711 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	T/T	HWP	G	T
ss11494515	HapMap-CEU	European	120	IG	0.817	0.150	0.033	0.100	0.892	0.108
	HapMap-HCB	Asian	90	IG	0.600	0.356	0.044	1.000	0.778	0.222
	HapMap-JPT	Asian	88	IG	0.432	0.523	0.045	0.150	0.693	0.307
	HapMap-YRI	Sub-Saharan African	120	IG	0.483	0.467	0.050	0.251	0.717	0.283
ss23942512	AFD_EUR_PANEL	European	44	IG	0.727	0.273		0.479	0.864	0.136
	AFD_AFR_PANEL	African American	42	IG	0.619	0.333	0.048	1.000	0.786	0.214
	AFD_CHN_PANEL	Asian	48	IG	0.583	0.375	0.042	1.000	0.771	0.229
ss66395802	HapMap-CEU	European	118	GF	0.831	0.153	0.017		0.907	0.093
	HapMap-HCB	Asian	90	GF	0.600	0.356	0.044		0.778	0.222
	HapMap-JPT	Asian	90	GF	0.444	0.511	0.044		0.700	0.300
	HapMap-YRI	Sub-Saharan African	120	GF	0.483	0.467	0.050		0.717	0.283

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN