Transcription

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component	K	Contig214	DehaBAV11231	COG4219	42	7e-05

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS	K	Contig214	DehaBAV10841	COG1594	34	0.010
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10059	COG1813	41	1e-05
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10092	COG1813	47	1e-06
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10101	COG1813	36	5e-04
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10299	COG1813	36	5e-04
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10315	COG1813	41	2e-05
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10524	COG1813	35	8e-04
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV10791	COG1813	36	0.002
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig214	DehaBAV11149	COG1813	38	2e-04
Transcription antiterminator	K	Contig214	DehaBAV10885	COG0250	175	2e-45
Transcription elongation factor	K	Contig214	DehaBAV10696	COG0782	125	4e-30
Transcription elongation factor	K	Contig214	DehaBAV10876	COG0195	158	6e-40
Transcription termination factor	K	Contig214	DehaBAV10536	COG1158	41	2e-04
Transcription termination factor	K	Contig214	DehaBAV10538	COG1158	45	9e-06
Transcription termination factor	K	Contig214	DehaBAV11089	COG0781	118	2e-28
Transcription termination factor	K	Contig214	DehaBAV11215	COG1158	564	1.0e-162

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV10295	COG2771	45	4e-06
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV10409	COG2771	61	9e-11
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV10632	COG2771	60	1e-10
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV10849	COG2771	45	5e-06
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV10945	COG2771	71	9e-14
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV10974	COG2771	57	9e-10
DNA-binding HTH domain-containing protein	K	Contig214	DehaBAV11162	COG2771	67	9e-13
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10106	COG3710	40	1e-04
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10124	COG3710	52	5e-08
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10176	COG3710	43	2e-05
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10235	COG3710	63	3e-11
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10274	COG3710	49	3e-07
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10286	COG3710	44	1e-05
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10937	COG3710	53	2e-08
DNA-binding winged-HTH domains	K	Contig214	DehaBAV10955	COG3710	65	5e-12

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig214	DehaBAV10479	COG0202	254	5e-69
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig214	DehaBAV10578	COG0085	1026	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig214	DehaBAV10579	COG0086	645	0.0
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig214	DehaBAV10526	COG0568	317	1e-87
DNA-directed RNA polymerase specialized sigma subunit	K	Contig214	DehaBAV10526	COG1191	123	3e-29
DNA-directed RNA polymerase specialized sigma subunit	K	Contig214	DehaBAV11159	COG1191	35	0.004
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig214	DehaBAV10135	COG1595	34	0.002
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig214	DehaBAV11159	COG1595	110	8e-26
DNA-directed RNA polymerase subunit E'	K	Contig214	DehaBAV10861	COG1095	36	0.010

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	Contig214	DehaBAV10370	COG1224	54	2e-08
DNA helicase TIP49 TBP-interacting protein	K	Contig214	DehaBAV10580	COG1224	44	1e-05
DNA helicase TIP49 TBP-interacting protein	K	Contig214	DehaBAV10877	COG1224	37	0.004
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV10169	COG1061	66	9e-12
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV10183	COG1061	49	1e-06
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV10316	COG1061	49	1e-06
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV10418	COG1061	56	6e-09
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV10514	COG1061	39	6e-04
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV10858	COG1061	45	1e-05
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV11044	COG1061	65	2e-11
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV11079	COG1061	65	2e-11
DNA or RNA helicase of superfamily II	K	Contig214	DehaBAV11092	COG1061	63	1e-10
dsRNA-specific ribonuclease	K	Contig214	DehaBAV10908	COG0571	229	1e-61
Exoribonuclease R	K	Contig214	DehaBAV10861	COG0557	42	2e-04
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig214	DehaBAV10005	COG0317	854	0.0
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig214	DehaBAV11016	COG0317	37	0.003
Histone acetyltransferase	K	Contig214	DehaBAV10108	COG1243	39	0.001
Histone acetyltransferase	K	Contig214	DehaBAV10279	COG1243	39	0.001
Histone acetyltransferase	K	Contig214	DehaBAV10586	COG1243	510	1.0e-146
Histone acetyltransferase	K	Contig214	DehaBAV10776	COG1243	48	9e-07
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig214	DehaBAV11239	COG0378	196	7e-52
Nucleosome binding factor SPN SPT16 subunit	K	Contig214	DehaBAV10650	COG5406	46	4e-06
Predicted nucleic-acid-binding protein implicated in transcription termination	K	Contig214	DehaBAV10875	COG2740	63	5e-12
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig214	DehaBAV11159	COG4941	38	6e-04
Predicted transcriptional regulator containing CBS domains	K	Contig214	DehaBAV10695	COG4109	53	4e-08
Predicted transcriptional regulator containing CBS domains	K	Contig214	DehaBAV10821	COG4109	44	3e-06
Predicted transcriptional regulator containing CBS domains	K	Contig214	DehaBAV11233	COG4109	48	2e-06
Predicted transcriptional regulator	K	Contig214	DehaBAV10792	COG5340	32	0.007
Predicted transcriptional regulator	K	Contig214	DehaBAV10892	COG4189	46	6e-07
Predicted transcriptional regulator	K	Contig214	DehaBAV11060	COG4742	38	1e-04
Predicted transcriptional regulator	K	Contig214	DehaBAV11060	COG4189	45	1e-06
Predicted transcriptional regulator	K	Contig214	DehaBAV11331	COG4742	37	3e-04
Prophage antirepressor	K	Contig214	DehaBAV10057	COG3617	35	0.008
Rad3-related DNA helicase	K	Contig214	DehaBAV10169	COG1199	37	0.003
RecG-like helicase	K	Contig214	DehaBAV10169	COG1200	44	2e-05
RecG-like helicase	K	Contig214	DehaBAV10316	COG1200	67	5e-12
RecG-like helicase	K	Contig214	DehaBAV10418	COG1200	44	3e-05
RecG-like helicase	K	Contig214	DehaBAV11079	COG1200	749	0.0
RecG-like helicase	K	Contig214	DehaBAV11092	COG1200	349	5e-97
Regulator of competence-specific genes	K	Contig214	DehaBAV11058	COG3070	63	3e-12
Regulators of stationary/sporulation gene expression	K	Contig214	DehaBAV11227	COG2002	37	3e-04
Regulators of stationary/sporulation gene expression	K	Contig214	DehaBAV11362	COG2002	39	9e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10106	COG4567	47	9e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10124	COG4567	52	4e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10176	COG4567	47	1e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10235	COG4567	70	1e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10240	COG4567	37	4e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10241	COG4567	47	4e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10274	COG4567	47	9e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10286	COG4567	49	4e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10295	COG4567	40	2e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10409	COG4567	51	9e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10597	COG4567	74	2e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10632	COG4567	45	4e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10849	COG4567	37	0.001
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10903	COG4567	45	4e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10937	COG4567	58	5e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV10945	COG4567	52	4e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV11106	COG4567	58	3e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig214	DehaBAV11162	COG4567	41	5e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10106	COG3437	89	3e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10124	COG3437	75	3e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10176	COG3437	75	3e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10235	COG3437	90	1e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10240	COG3437	55	1e-09
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10241	COG3437	86	8e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10274	COG3437	81	7e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10286	COG3437	78	4e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10295	COG3437	43	1e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10409	COG3437	66	2e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10597	COG3437	242	2e-65
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10632	COG3437	60	1e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10849	COG3437	57	9e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10903	COG3437	68	5e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10937	COG3437	92	5e-20
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10945	COG3437	62	4e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV10974	COG3437	53	3e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV11106	COG3437	77	6e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV11162	COG3437	48	5e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV11191	COG3437	199	5e-52
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig214	DehaBAV11354	COG3437	39	8e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10106	COG2197	83	2e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10124	COG2197	80	9e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10176	COG2197	70	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10235	COG2197	80	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10240	COG2197	53	5e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10241	COG2197	76	7e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10274	COG2197	80	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10286	COG2197	82	3e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10295	COG2197	153	1e-38
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10409	COG2197	205	2e-54
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10597	COG2197	65	9e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10632	COG2197	206	9e-55
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10849	COG2197	170	6e-44
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10903	COG2197	69	2e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10937	COG2197	85	4e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10945	COG2197	205	2e-54
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV10974	COG2197	171	4e-44
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV11106	COG2197	80	9e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig214	DehaBAV11162	COG2197	148	2e-37
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10106	COG4565	66	3e-12
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10124	COG4565	46	2e-06
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10176	COG4565	67	1e-12
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10235	COG4565	62	3e-11
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10240	COG4565	43	7e-06
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10241	COG4565	53	7e-09
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10274	COG4565	62	4e-11
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10286	COG4565	61	1e-10
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10295	COG4565	54	1e-08
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10409	COG4565	77	9e-16
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10597	COG4565	82	7e-17
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10632	COG4565	70	2e-13
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10849	COG4565	51	7e-08
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10903	COG4565	60	1e-09
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10937	COG4565	71	9e-14
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10945	COG4565	64	9e-12
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV10974	COG4565	49	2e-07
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV11106	COG4565	66	1e-12
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV11162	COG4565	36	0.002
Response regulator of citrate/malate metabolism	K	Contig214	DehaBAV11249	COG4565	34	0.004
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10106	COG3279	58	4e-10
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10124	COG3279	53	2e-08
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10176	COG3279	66	3e-12
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10235	COG3279	52	6e-08
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10240	COG3279	37	4e-04
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10241	COG3279	48	1e-07
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10274	COG3279	60	2e-10
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10286	COG3279	57	8e-10
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10295	COG3279	61	8e-11
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10409	COG3279	72	5e-14
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10597	COG3279	55	8e-09
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10632	COG3279	65	5e-12
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10849	COG3279	50	1e-07
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10903	COG3279	53	2e-07
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10937	COG3279	62	3e-11
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10945	COG3279	62	5e-11
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV10974	COG3279	65	6e-12
Response regulator of the LytR/AlgR family	K	Contig214	DehaBAV11106	COG3279	63	1e-11
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10106	COG0745	163	1e-41
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10124	COG0745	172	2e-44
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10176	COG0745	169	1e-43
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10235	COG0745	246	1e-66
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10240	COG0745	58	2e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10241	COG0745	105	1e-24
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10274	COG0745	178	2e-46
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10286	COG0745	193	1e-50
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10295	COG0745	52	5e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10409	COG0745	85	6e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10597	COG0745	83	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10632	COG0745	83	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10849	COG0745	77	1e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10903	COG0745	78	3e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10937	COG0745	227	6e-61
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10945	COG0745	74	9e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10955	COG0745	129	2e-31
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV10974	COG0745	46	3e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV11106	COG0745	79	2e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig214	DehaBAV11162	COG0745	60	1e-10
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig214	DehaBAV10077	COG1974	48	7e-07
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig214	DehaBAV10092	COG1974	35	0.004
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig214	DehaBAV10791	COG1974	36	0.002
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig214	DehaBAV11384	COG1974	146	1e-36
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV10169	COG0513	395	1.0e-111
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV10183	COG0513	57	1e-08
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV10316	COG0513	42	2e-04
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV10418	COG0513	57	3e-09
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV10858	COG0513	80	7e-16
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV11079	COG0513	59	2e-09
Superfamily II DNA and RNA helicase	K	Contig214	DehaBAV11092	COG0513	74	5e-14
Superfamily II DNA/RNA helicase SNF2 family	K	Contig214	DehaBAV10169	COG0553	43	5e-05
Superfamily II DNA/RNA helicase SNF2 family	K	Contig214	DehaBAV10183	COG0553	44	9e-05
Transcriptional accessory protein	K	Contig214	DehaBAV10024	COG2183	42	3e-05
Transcriptional accessory protein	K	Contig214	DehaBAV10861	COG2183	76	1e-14
Transcriptional activator of acetoin/glycerol metabolism	K	Contig214	DehaBAV11220	COG3284	39	0.002
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	K	Contig214	DehaBAV10251	COG4977	61	5e-11
Transcriptional regulator effector-binding domain/component	K	Contig214	DehaBAV11290	COG4978	41	6e-05

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV10295	COG2909	45	4e-06
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV10409	COG2909	61	6e-11
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV10525	COG2909	41	4e-04
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV10632	COG2909	70	1e-13
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV10945	COG2909	53	1e-08
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV10974	COG2909	60	1e-10
ATP-dependent transcriptional regulator	K	Contig214	DehaBAV11162	COG2909	62	4e-11
Mn-dependent transcriptional regulator	K	Contig214	DehaBAV11289	COG1321	37	0.001
Predicted transcriptional regulator consists of a Zn-ribbon and ATP-cone domains	K	Contig214	DehaBAV10323	COG1327	190	6e-50
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen	K	Contig214	DehaBAV10792	COG2865	33	0.004
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig214	DehaBAV10695	COG2524	59	6e-10
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig214	DehaBAV10730	COG2524	36	7e-04
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig214	DehaBAV11233	COG2524	45	1e-05
Predicted transcriptional regulator	K	Contig214	DehaBAV10059	COG3636	33	0.004
Predicted transcriptional regulator	K	Contig214	DehaBAV10059	COG1709	32	0.008
Predicted transcriptional regulator	K	Contig214	DehaBAV10059	COG3655	37	2e-04
Predicted transcriptional regulator	K	Contig214	DehaBAV10077	COG2932	52	3e-08
Predicted transcriptional regulator	K	Contig214	DehaBAV10092	COG2932	44	7e-06
Predicted transcriptional regulator	K	Contig214	DehaBAV10092	COG1395	37	0.001
Predicted transcriptional regulator	K	Contig214	DehaBAV10092	COG3423	35	0.005
Predicted transcriptional regulator	K	Contig214	DehaBAV10214	COG1709	34	0.003
Predicted transcriptional regulator	K	Contig214	DehaBAV10524	COG2944	35	0.002
Predicted transcriptional regulator	K	Contig214	DehaBAV10524	COG1395	34	0.003
Predicted transcriptional regulator	K	Contig214	DehaBAV10730	COG1497	32	0.008
Predicted transcriptional regulator	K	Contig214	DehaBAV10789	COG2345	33	0.009
Predicted transcriptional regulator	K	Contig214	DehaBAV10792	COG2345	36	6e-04
Predicted transcriptional regulator	K	Contig214	DehaBAV10792	COG1497	36	5e-04
Predicted transcriptional regulator	K	Contig214	DehaBAV10792	COG2378	35	0.001
Predicted transcriptional regulator	K	Contig214	DehaBAV10892	COG3355	34	0.002
Predicted transcriptional regulator	K	Contig214	DehaBAV11003	COG2932	35	0.004
Predicted transcriptional regulator	K	Contig214	DehaBAV11106	COG3311	35	0.003
Predicted transcriptional regulator	K	Contig214	DehaBAV11149	COG1395	35	9e-04
Predicted transcriptional regulator	K	Contig214	DehaBAV11187	COG3432	52	9e-09
Predicted transcriptional regulator	K	Contig214	DehaBAV11249	COG2345	33	0.007
Predicted transcriptional regulator	K	Contig214	DehaBAV11249	COG2378	34	0.005
Predicted transcriptional regulator	K	Contig214	DehaBAV11289	COG1497	215	3e-57
Predicted transcriptional regulator	K	Contig214	DehaBAV11341	COG1959	135	2e-33
Predicted transcriptional regulator	K	Contig214	DehaBAV11384	COG2932	54	9e-09
Predicted transcriptional regulators	K	Contig214	DehaBAV10059	COG1396	33	0.005
Predicted transcriptional regulators	K	Contig214	DehaBAV10059	COG1476	46	8e-07
Predicted transcriptional regulators	K	Contig214	DehaBAV10077	COG1396	54	6e-09
Predicted transcriptional regulators	K	Contig214	DehaBAV10077	COG1476	43	1e-05
Predicted transcriptional regulators	K	Contig214	DehaBAV10092	COG1396	47	1e-06
Predicted transcriptional regulators	K	Contig214	DehaBAV10092	COG1476	63	2e-11
Predicted transcriptional regulators	K	Contig214	DehaBAV10101	COG1396	33	0.003
Predicted transcriptional regulators	K	Contig214	DehaBAV10101	COG1476	49	6e-08
Predicted transcriptional regulators	K	Contig214	DehaBAV10214	COG1396	47	6e-07
Predicted transcriptional regulators	K	Contig214	DehaBAV10299	COG1396	33	0.003
Predicted transcriptional regulators	K	Contig214	DehaBAV10299	COG1476	49	6e-08
Predicted transcriptional regulators	K	Contig214	DehaBAV10315	COG1396	38	3e-04
Predicted transcriptional regulators	K	Contig214	DehaBAV10524	COG1476	83	3e-18
Predicted transcriptional regulators	K	Contig214	DehaBAV10730	COG1695	53	5e-09
Predicted transcriptional regulators	K	Contig214	DehaBAV10791	COG1396	51	8e-08
Predicted transcriptional regulators	K	Contig214	DehaBAV10791	COG1476	34	0.009
Predicted transcriptional regulators	K	Contig214	DehaBAV10892	COG0640	61	3e-11
Predicted transcriptional regulators	K	Contig214	DehaBAV10892	COG1777	49	1e-07
Predicted transcriptional regulators	K	Contig214	DehaBAV10982	COG1695	73	9e-15
Predicted transcriptional regulators	K	Contig214	DehaBAV11060	COG0640	54	2e-09
Predicted transcriptional regulators	K	Contig214	DehaBAV11060	COG1777	37	2e-04
Predicted transcriptional regulators	K	Contig214	DehaBAV11098	COG0789	78	7e-16
Predicted transcriptional regulators	K	Contig214	DehaBAV11149	COG1396	35	0.002
Predicted transcriptional regulators	K	Contig214	DehaBAV11149	COG1476	81	2e-17
Predicted transcriptional regulators	K	Contig214	DehaBAV11161	COG0789	33	0.006
Predicted transcriptional regulators	K	Contig214	DehaBAV11219	COG0789	51	2e-08
Predicted transcriptional regulators	K	Contig214	DehaBAV11249	COG0789	35	0.001
Predicted transcriptional regulators	K	Contig214	DehaBAV11295	COG1695	37	7e-04
Predicted transcriptional regulators	K	Contig214	DehaBAV11311	COG0789	59	4e-10
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10059	COG3620	37	3e-04
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10092	COG3620	37	0.001
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10101	COG3620	45	2e-06
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10299	COG3620	45	2e-06
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10315	COG3620	33	0.008
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10524	COG3620	41	2e-05
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10695	COG3620	43	4e-05
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10791	COG3620	36	0.002
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig214	DehaBAV10833	COG3620	38	5e-04
Putative transcriptional regulator homolog of Bvg accessory factor	K	Contig214	DehaBAV10405	COG1521	226	1e-60
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10114	COG3829	38	6e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10234	COG3829	48	2e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10290	COG3829	40	7e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10408	COG3829	42	7e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10598	COG3829	48	4e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10877	COG3829	40	6e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10903	COG3829	42	3e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig214	DehaBAV10946	COG3829	50	1e-06
Transcriptional regulator	K	Contig214	DehaBAV10252	COG1309	58	6e-10
Transcriptional regulator	K	Contig214	DehaBAV11060	COG1414	33	0.004
Transcriptional regulator	K	Contig214	DehaBAV11244	COG1309	64	6e-12
Transcriptional regulator	K	Contig214	DehaBAV11327	COG1309	67	9e-13
Transcriptional regulator of aromatic amino acids metabolism	K	Contig214	DehaBAV10234	COG3283	38	0.003
Transcriptional regulator of heat shock gene	K	Contig214	DehaBAV11210	COG1420	217	1e-57
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig214	DehaBAV10413	COG1167	36	0.005
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig214	DehaBAV10549	COG1167	128	5e-31
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig214	DehaBAV10625	COG1167	84	2e-17
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig214	DehaBAV10669	COG1167	168	6e-43
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig214	DehaBAV10762	COG1167	91	1e-19
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig214	DehaBAV11153	COG1167	151	9e-38
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig214	DehaBAV10370	COG1221	37	0.003
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig214	DehaBAV10877	COG1221	52	1e-07
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig214	DehaBAV11119	COG1221	41	2e-04
Transcriptional regulators	K	Contig214	DehaBAV10146	COG1737	76	2e-15
Transcriptional regulators	K	Contig214	DehaBAV10485	COG1737	43	5e-05
Transcriptional regulators	K	Contig214	DehaBAV10507	COG1737	65	2e-11
Transcriptional regulators	K	Contig214	DehaBAV10789	COG1846	68	5e-13
Transcriptional regulators	K	Contig214	DehaBAV10792	COG1522	35	0.002
Transcriptional regulators	K	Contig214	DehaBAV10983	COG1846	55	2e-09
Transcriptional regulators	K	Contig214	DehaBAV10987	COG1846	48	3e-07
Transcriptional regulators	K	Contig214	DehaBAV11060	COG1522	32	0.008
Transcriptional regulators	K	Contig214	DehaBAV11082	COG1522	39	7e-05
Transcriptional regulators	K	Contig214	DehaBAV11152	COG1522	88	3e-19
Transcriptional regulators	K	Contig214	DehaBAV11286	COG1846	38	2e-04
Transcriptional regulator/sugar kinase	K	Contig214	DehaBAV10046	COG1940	206	2e-54

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription-repair coupling factor (superfamily II helicase)	K	Contig214	DehaBAV10169	COG1197	39	0.001
Transcription-repair coupling factor (superfamily II helicase)	K	Contig214	DehaBAV10316	COG1197	73	6e-14
Transcription-repair coupling factor (superfamily II helicase)	K	Contig214	DehaBAV10418	COG1197	139	7e-34
Transcription-repair coupling factor (superfamily II helicase)	K	Contig214	DehaBAV11079	COG1197	363	1.0e-101
Transcription-repair coupling factor (superfamily II helicase)	K	Contig214	DehaBAV11092	COG1197	1092	0.0

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