Signal Transduction Mechanisms

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig41	dred0727	COG0834	166	1e-42
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig41	dred0743	COG0834	162	2e-41
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig41	dred0771	COG0834	158	5e-40
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig41	dred1377	COG0834	164	5e-42
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig41	dred2235	COG0834	119	2e-28
ACT domain-containing protein	T	Contig41	dred1671	COG3830	92	6e-21
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)	T	Contig41	dred1103	COG1366	68	2e-13
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig41	dred1104	COG2172	89	2e-19
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	T	Contig41	dred0698	COG0664	147	8e-37
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	T	Contig41	dred1262	COG0664	130	6e-32
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	T	Contig41	dred3227	COG0664	124	4e-30
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	T	Contig41	dred3232	COG0664	116	1e-27
Carbon starvation protein predicted membrane protein	T	Contig41	dred2956	COG1966	342	4e-95
Carbon storage regulator (could also regulate swarming and quorum sensing)	T	Contig41	dred2417	COG1551	64	2e-12
Carbon storage regulator (could also regulate swarming and quorum sensing)	T	Contig41	dred2430	COG1551	48	1e-07
CBS-domain-containing membrane protein	T	Contig41	dred1509	COG3448	54	6e-09
CBS-domain-containing membrane protein	T	Contig41	dred1607	COG3448	42	2e-05
CBS-domain-containing membrane protein	T	Contig41	dred1999	COG3448	42	2e-05
CBS-domain-containing membrane protein	T	Contig41	dred2943	COG3448	122	2e-29
Chemotaxis protein CheC inhibitor of MCP methylation	T	Contig41	dred1087	COG1776	101	8e-23
Chemotaxis protein CheC inhibitor of MCP methylation	T	Contig41	dred2380	COG1776	111	1e-25
Chemotaxis protein CheC inhibitor of MCP methylation	T	Contig41	dred2383	COG1776	130	7e-32
Chemotaxis protein histidine kinase and related kinases	T	Contig41	dred2440	COG0643	606	1.0e-174
Chemotaxis protein; stimulates methylation of MCP proteins	T	Contig41	dred2385	COG1871	180	6e-47
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig41	dred2439	COG2201	321	5e-89
Chemotaxis signal transduction protein	T	Contig41	dred2154	COG0835	123	4e-30
Chemotaxis signal transduction protein	T	Contig41	dred2441	COG0835	136	9e-34
DnaK suppressor protein	T	Contig41	dred1697	COG1734	76	2e-15
FOG: EAL domain	T	Contig41	dred0836	COG2200	153	1e-38
FOG: FHA domain	T	Contig41	dred1709	COG1716	65	4e-12
FOG: FHA domain	T	Contig41	dred1710	COG1716	63	1e-11
FOG: GGDEF domain	T	Contig41	dred0602	COG2199	58	2e-10
FOG: GGDEF domain	T	Contig41	dred0799	COG2199	141	2e-34
FOG: GGDEF domain	T	Contig41	dred1016	COG2199	85	5e-18
FOG: GGDEF domain	T	Contig41	dred2279	COG2199	152	6e-38
FOG: GGDEF domain	T	Contig41	dred2850	COG2199	132	1e-32
FOG: GGDEF domain	T	Contig41	dred3086	COG2199	125	7e-30
FOG: PAS/PAC domain	T	Contig41	dred1847	COG2202	48	1e-07
Growth inhibitor	T	Contig41	dred2894	COG2337	109	5e-26
Guanosine polyphosphate pyrophosphohydrolases/synthetases	T	Contig41	dred0733	COG0317	881	0.0
HD-GYP domain	T	Contig41	dred0009	COG2206	159	2e-40
HD-GYP domain	T	Contig41	dred0279	COG2206	203	1e-53
HD-GYP domain	T	Contig41	dred0383	COG2206	197	2e-51
HD-GYP domain	T	Contig41	dred0603	COG2206	120	3e-29
HD-GYP domain	T	Contig41	dred0640	COG2206	199	3e-52
HD-GYP domain	T	Contig41	dred0780	COG2206	187	2e-48
HD-GYP domain	T	Contig41	dred0910	COG2206	191	9e-50
HD-GYP domain	T	Contig41	dred0970	COG2206	106	1e-24
HD-GYP domain	T	Contig41	dred1451	COG2206	196	2e-51
HD-GYP domain	T	Contig41	dred1552	COG2206	205	9e-54
HD-GYP domain	T	Contig41	dred1668	COG2206	42	3e-05
HD-GYP domain	T	Contig41	dred2651	COG2206	206	3e-54
HD-GYP domain	T	Contig41	dred2727	COG2206	196	3e-51
HD-GYP domain	T	Contig41	dred2856	COG2206	208	4e-55
HD-GYP domain	T	Contig41	dred3089	COG2206	205	4e-54
Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide	T	Contig41	dred0909	COG4512	53	2e-08
Methyl-accepting chemotaxis protein	T	Contig41	dred0035	COG0840	94	1e-20
Methyl-accepting chemotaxis protein	T	Contig41	dred0384	COG0840	182	5e-47
Methyl-accepting chemotaxis protein	T	Contig41	dred0385	COG0840	87	2e-18
Methyl-accepting chemotaxis protein	T	Contig41	dred0600	COG0840	94	9e-21
Methyl-accepting chemotaxis protein	T	Contig41	dred0620	COG0840	164	1e-41
Methyl-accepting chemotaxis protein	T	Contig41	dred0779	COG0840	82	3e-17
Methyl-accepting chemotaxis protein	T	Contig41	dred1176	COG0840	83	3e-17
Methyl-accepting chemotaxis protein	T	Contig41	dred1181	COG0840	181	1e-46
Methyl-accepting chemotaxis protein	T	Contig41	dred1430	COG0840	85	5e-18
Methyl-accepting chemotaxis protein	T	Contig41	dred1534	COG0840	107	8e-25
Methyl-accepting chemotaxis protein	T	Contig41	dred1557	COG0840	177	1e-45
Methyl-accepting chemotaxis protein	T	Contig41	dred1572	COG0840	82	5e-17
Methyl-accepting chemotaxis protein	T	Contig41	dred1693	COG0840	185	8e-48
Methyl-accepting chemotaxis protein	T	Contig41	dred2027	COG0840	84	8e-18
Methyl-accepting chemotaxis protein	T	Contig41	dred2120	COG0840	58	7e-10
Methyl-accepting chemotaxis protein	T	Contig41	dred2263	COG0840	150	3e-37
Methyl-accepting chemotaxis protein	T	Contig41	dred2461	COG0840	182	6e-47
Methyl-accepting chemotaxis protein	T	Contig41	dred2636	COG0840	133	2e-32
Methyl-accepting chemotaxis protein	T	Contig41	dred2726	COG0840	102	3e-23
Methyl-accepting chemotaxis protein	T	Contig41	dred2737	COG0840	183	2e-47
Methyl-accepting chemotaxis protein	T	Contig41	dred2760	COG0840	182	9e-47
Methyl-accepting chemotaxis protein	T	Contig41	dred2857	COG0840	167	1e-42
Methyl-accepting chemotaxis protein	T	Contig41	dred2872	COG0840	45	1e-06
Methyl-accepting chemotaxis protein	T	Contig41	dred3261	COG0840	32	0.009
Methylase of chemotaxis methyl-accepting proteins	T	Contig41	dred1268	COG1352	191	4e-50
Methylase of chemotaxis methyl-accepting proteins	T	Contig41	dred2384	COG1352	243	1e-65
Osmosensitive K+ channel histidine kinase	T	Contig41	dred1902	COG2205	191	1e-49
Phosphate starvation-inducible protein PhoH predicted ATPase	T	Contig41	dred2484	COG1702	358	1.0e-100
Phosphoinositide polyphosphatase (Sac family)	T	Contig41	dred1610	COG5329	37	0.002
Predicted ATPase related to phosphate starvation-inducible protein PhoH	T	Contig41	dred1250	COG1875	371	1.0e-104
Predicted membrane GTPase involved in stress response	T	Contig41	dred0472	COG1217	929	0.0
Predicted periplasmic ligand-binding sensor domain	T	Contig41	dred2638	COG3322	44	3e-06
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig41	dred1346	COG5001	352	9e-98
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig41	dred0447	COG2905	90	7e-20
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig41	dred1256	COG2905	69	2e-13
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig41	dred2471	COG2905	46	3e-06
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig41	dred3263	COG2972	158	6e-40
Predicted transmembrane sensor domain	T	Contig41	dred3090	COG4252	161	1e-40
Protein-tyrosine-phosphatase	T	Contig41	dred3164	COG0394	127	4e-31
Putative regulator of cell autolysis	T	Contig41	dred2958	COG3275	498	1.0e-142
Putative Ser protein kinase	T	Contig41	dred2006	COG2766	676	0.0
Regulator of polyketide synthase expression	T	Contig41	dred0388	COG2508	72	4e-14
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig41	dred0651	COG3706	171	1e-43
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig41	dred1554	COG3706	219	3e-58
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig41	dred2700	COG3706	159	3e-40
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig41	dred1840	COG3437	162	5e-41
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig41	dred0925	COG2197	93	4e-21
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig41	dred1086	COG2197	90	1e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig41	dred1864	COG2197	163	1e-41
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig41	dred2108	COG2197	217	4e-58
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred1312	COG2204	525	1.0e-150
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred1501	COG2204	420	1.0e-118
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred1510	COG2204	524	1.0e-150
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred2001	COG2204	529	1.0e-151
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred2274	COG2204	464	1.0e-132
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred2303	COG2204	40	6e-05
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred2891	COG2204	108	2e-25
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig41	dred3178	COG2204	108	1e-25
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig41	dred1293	COG4753	97	8e-22
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig41	dred2382	COG4753	106	6e-25
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig41	dred3262	COG4753	130	2e-31
Response regulator of the LytR/AlgR family	T	Contig41	dred2957	COG3279	169	1e-43
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred0323	COG0745	209	2e-55
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred0630	COG0745	234	3e-63
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred0707	COG0745	260	7e-71
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred0759	COG0745	232	1e-62
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred1555	COG0745	100	6e-23
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred1738	COG0745	56	2e-09
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred1845	COG0745	222	2e-59
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred1903	COG0745	240	6e-65
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred2641	COG0745	218	2e-58
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig41	dred2981	COG0745	242	1e-65
Response regulator with putative antiterminator output domain	T	Contig41	dred1289	COG3707	155	3e-39
Response regulator with putative antiterminator output domain	T	Contig41	dred2808	COG3707	130	7e-32
Response regulator with putative antiterminator output domain	T	Contig41	dred2811	COG3707	111	2e-26
Response regulator with putative antiterminator output domain	T	Contig41	dred2864	COG3707	106	7e-25
Serine phosphatase RsbU regulator of sigma subunit	T	Contig41	dred0124	COG2208	107	3e-24
Serine phosphatase RsbU regulator of sigma subunit	T	Contig41	dred1584	COG2208	44	1e-05
Serine phosphatase RsbU regulator of sigma subunit	T	Contig41	dred1841	COG2208	112	8e-26
Serine/threonine protein kinase	T	Contig41	dred0786	COG0515	98	8e-22
Serine/threonine protein kinase	T	Contig41	dred1714	COG0515	171	1e-43
Serine/threonine protein phosphatase	T	Contig41	dred1711	COG0631	216	1e-57
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig41	dred1631	COG4650	35	0.009
Signal transduction histidine kinase	T	Contig41	dred0324	COG5002	178	6e-46
Signal transduction histidine kinase	T	Contig41	dred0708	COG5002	284	9e-78
Signal transduction histidine kinase	T	Contig41	dred0760	COG0642	170	2e-43
Signal transduction histidine kinase	T	Contig41	dred1267	COG0642	156	7e-39
Signal transduction histidine kinase	T	Contig41	dred1292	COG3920	154	1e-38
Signal transduction histidine kinase	T	Contig41	dred1311	COG5002	160	2e-40
Signal transduction histidine kinase	T	Contig41	dred1556	COG5002	193	7e-50
Signal transduction histidine kinase	T	Contig41	dred1842	COG0642	156	2e-39
Signal transduction histidine kinase	T	Contig41	dred1863	COG4585	129	6e-31
Signal transduction histidine kinase	T	Contig41	dred2000	COG0642	160	3e-40
Signal transduction histidine kinase	T	Contig41	dred2107	COG4585	173	1e-44
Signal transduction histidine kinase	T	Contig41	dred2145	COG0642	173	1e-43
Signal transduction histidine kinase	T	Contig41	dred2304	COG0642	139	3e-34
Signal transduction histidine kinase	T	Contig41	dred2640	COG0642	169	4e-43
Signal transduction histidine kinase	T	Contig41	dred2970	COG0642	88	1e-18
Signal transduction histidine kinase	T	Contig41	dred2980	COG5002	198	7e-52
Signal transduction histidine kinase	T	Contig41	dred3094	COG0642	108	3e-25
Signal transduction histidine kinase nitrate/nitrite-specific	T	Contig41	dred1535	COG3850	41	5e-05
Signal transduction histidine kinase nitrogen specific	T	Contig41	dred1139	COG3852	162	5e-41
Signal transduction histidine kinase nitrogen specific	T	Contig41	dred1269	COG3852	126	2e-30
Signal transduction histidine kinase nitrogen specific	T	Contig41	dred1525	COG3852	141	1e-34
Signal transduction histidine kinase nitrogen specific	T	Contig41	dred1745	COG3852	154	1e-38
Signal transduction histidine kinase nitrogen specific	T	Contig41	dred2293	COG3852	139	8e-34
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	Contig41	dred1500	COG4191	158	1e-39
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	Contig41	dred1511	COG4191	155	6e-39
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	Contig41	dred2275	COG4191	163	3e-41
Signal transduction histidine kinase regulating citrate/malate metabolism	T	Contig41	dred2533	COG3290	66	1e-12
Signal transduction histidine kinase regulating citrate/malate metabolism	T	Contig41	dred2851	COG3290	39	3e-04
SOS-response transcriptional repressors (RecA-mediated autopeptidases)	T	Contig41	dred1183	COG1974	107	7e-25
SOS-response transcriptional repressors (RecA-mediated autopeptidases)	T	Contig41	dred1873	COG1974	188	2e-49
SOS-response transcriptional repressors (RecA-mediated autopeptidases)	T	Contig41	dred2624	COG1974	69	3e-13
Sugar diacid utilization regulator	T	Contig41	dred2904	COG3835	75	5e-15

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Putative stress-responsive transcriptional regulator	T	Contig41	dred1339	COG1983	66	3e-13
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred0258	COG3829	378	1.0e-106
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred0346	COG3829	460	1.0e-130
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred0399	COG3829	477	1.0e-136
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred0580	COG3829	427	1.0e-121
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred0663	COG3829	437	1.0e-123
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1494	COG3829	463	1.0e-131
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1544	COG3829	429	1.0e-121
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1719	COG3829	464	1.0e-132
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1725	COG3829	449	1.0e-127
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1763	COG3829	485	1.0e-138
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1776	COG3829	483	1.0e-137
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred1865	COG3829	41	1e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	Contig41	dred2835	COG3829	422	1.0e-119

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Uncharacterized proteins involved in stress response homologs of TerZ and putative cAMP-binding protein CABP1	T	Contig41	dred0334	COG2310	55	1e-09
Uncharacterized proteins involved in stress response homologs of TerZ and putative cAMP-binding protein CABP1	T	Contig41	dred0336	COG2310	236	8e-64
Uncharacterized proteins involved in stress response homologs of TerZ and putative cAMP-binding protein CABP1	T	Contig41	dred0337	COG2310	216	1e-57
Uncharacterized proteins involved in stress response homologs of TerZ and putative cAMP-binding protein CABP1	T	Contig41	dred0338	COG2310	221	3e-59
Universal stress protein UspA and related nucleotide-binding proteins	T	Contig41	dred1860	COG0589	40	7e-05
Universal stress protein UspA and related nucleotide-binding proteins	T	Contig41	dred2171	COG0589	96	1e-21

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