R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 94 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|9795609|gb|AAF98427.1|AC021044_6 (AC021044) Unknown protein [Arabidopsis
thaliana]
Length = 259
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | | 259
0 50 100 150 200 250
Plus Strand HSPs:
Score = 203 (71.5 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 54/118 (45%), Positives = 68/118 (57%), Frame = +2
Query: 20 SSKSLPMDSISPKPQENNNNNNNNIPKPMTRSEPANSYPTTFVQADTTSFKQVVQMLTGS 199
S+ S M S S E+N TRSE N YPTTFVQADT+SFKQVVQMLTGS
Sbjct: 34 SNNSCGMSSSS----ESNKPPTTPTRHVTTRSESGNPYPTTFVQADTSSFKQVVQMLTGS 89
Query: 200 SETAKQAAAAAXAGCXSSSS--SKPXN-PIPPMKSIPNKKQXPHFS---KLYERRTNSLN 361
+E K ++ S P + IPP+K++PNKKQ + +LYERR + N
Sbjct: 90 AERPKHGSSLKPNPTHHQPDPRSTPSSFSIPPIKAVPNKKQSSSSASGFRLYERRNSMKN 149
Query: 362 LR 367
L+
Sbjct: 150 LK 151
>gi|6997176|gb|AAF34839.1| (AC023839) unknown protein [Arabidopsis thaliana]
>gi|9294257|dbj|BAB02159.1| (AP000413)
gb|AAF34839.1~gene_id:K7L4.10~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 219
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 153 (53.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 44/93 (47%), Positives = 58/93 (62%), Frame = +2
Query: 104 MTRSEPANSYPTTFVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCXSSSSSKPXNPIP 283
+TRS+ YPTTFVQAD++SFKQVVQMLTGSS + ++ S K IP
Sbjct: 29 ITRSD---HYPTTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPP----TTPSGKGNFVIP 81
Query: 284 PMKSIPNKKQXPHFSKLYERRTN---SLNLRNSXHI 382
P+K+ KK + KLYERR++ + NL+NS I
Sbjct: 82 PIKTAQPKKHSGN--KLYERRSHGGFNNNLKNSLMI 115
>gi|9759077|dbj|BAB09555.1| (AB017066) gb|AAF34839.1~gene_id:MGN6.22~similar to
unknown protein [Arabidopsis thaliana]
Length = 243
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 48/115 (41%), Positives = 61/115 (53%), Frame = +2
Query: 20 SSKSLPMDSISPKPQENNNNNNNNIPKPMTRSEP---ANSYPTTFVQADTTSFKQVVQML 190
S S P +P P ++ I P + +N YPTTFVQADT++FKQVVQML
Sbjct: 7 SMSSKPEQMQNPPPMISSPRFQPQIISPHHHDQHQHLSNPYPTTFVQADTSTFKQVVQML 66
Query: 191 TGSSE---TAKQAAAAAXAGCXSSSSSKPXNPIPPMKSIPNKKQXPHFSKLYERRTNSLN 361
TGSS T K A + + SS IPP+K + F KLYERR N+ N
Sbjct: 67 TGSSTDTTTGKHHEAPSPVNNNNKGSSFS---IPPIKKTNS------F-KLYERRQNNNN 116
Query: 362 L 364
+
Sbjct: 117 M 117
>gi|2253579|gb|AAC69144.1| (U78721) hypothetical protein [Arabidopsis thaliana]
Length = 204
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/84 (39%), Positives = 45/84 (53%), Frame = +2
Query: 107 TRSEPANSYPTTFVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCXSSSSSKPXNPIPP 286
TR + Y TTF++ D +SFKQVVQ+LTG + P + IPP
Sbjct: 26 TRYVKDDMYETTFIRTDPSSFKQVVQLLTGIPKNPTHQP---------DPRFPPFHSIPP 76
Query: 287 MKSIPNKKQXPHFSKLYERRTNSL 358
+K++ NKKQ F +L ERR NS+
Sbjct: 77 IKAVTNKKQSSSF-RLSERR-NSM 98
>gi|4731914|gb|AAD28549.1|AF111942_1 (AF111942) development protein DG1106
[Dictyostelium discoideum]
Length = 954
Frame 2 hits (HSPs): ______ ______
__________________________________________________
Database sequence: | | | | | | | | 954
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 34/102 (33%), Positives = 53/102 (51%), Frame = +2
Query: 68 NNNNNNNN-----IPKPMTRSEPANSYPTTFVQADTTSFKQVVQMLTGSSETAKQAAAAA 232
N+NNN+NN I M E NS PT+ Q ++S + T +S + + ++
Sbjct: 460 NSNNNSNNHQQQIINDQMEYLELGNSNPTSPAQHSSSSSSSI----TSTSSSTSSSTSSI 515
Query: 233 XAGCXSSSSSKPXNP-----IPPMKSIPNKKQXPHFSKLYERRTNSLNLRN 370
+ SSSSSK +P I + S+ NKK+ P L + NS+ + N
Sbjct: 516 SSSSSSSSSSKTSSPNSKGLIQQINSLMNKKK-P----LLQSIQNSIQVSN 561
Score = 52 (18.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +2
Query: 68 NNNNNNNNI 94
NNNNNNNNI
Sbjct: 226 NNNNNNNNI 234
Score = 52 (18.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +2
Query: 68 NNNNNNNNI 94
NNNNNNNNI
Sbjct: 237 NNNNNNNNI 245
Score = 48 (16.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 188 NNNNNNNN 195
Score = 48 (16.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 189 NNNNNNNN 196
Score = 48 (16.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 222 NNNNNNNN 229
Score = 48 (16.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 223 NNNNNNNN 230
Score = 48 (16.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 224 NNNNNNNN 231
Score = 48 (16.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 225 NNNNNNNN 232
Score = 46 (16.2 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 71 NNNNNNNI 94
NNNNNNNI
Sbjct: 178 NNNNNNNI 185
Score = 46 (16.2 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +2
Query: 68 NNNNNNNNI 94
NNNNNN NI
Sbjct: 191 NNNNNNENI 199
Score = 46 (16.2 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +2
Query: 68 NNNNNNNNI 94
NNNNN NNI
Sbjct: 213 NNNNNTNNI 221
Score = 43 (15.1 bits), Expect = 0.0030, Sum P(2) = 0.0030
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
+NNNNNNN
Sbjct: 187 SNNNNNNN 194
Score = 43 (15.1 bits), Expect = 0.0030, Sum P(2) = 0.0030
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
+NNNNNNN
Sbjct: 236 SNNNNNNN 243
Score = 42 (14.8 bits), Expect = 0.0038, Sum P(2) = 0.0038
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +2
Query: 68 NNNNNNN 88
NNNNNNN
Sbjct: 178 NNNNNNN 184
Score = 42 (14.8 bits), Expect = 0.0038, Sum P(2) = 0.0038
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +2
Query: 68 NNNNNNN 88
NNNNNNN
Sbjct: 211 NNNNNNN 217
Score = 42 (14.8 bits), Expect = 0.0038, Sum P(2) = 0.0038
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +2
Query: 71 NNNNNNN 91
NNNNNNN
Sbjct: 211 NNNNNNN 217
Score = 42 (14.8 bits), Expect = 0.0038, Sum P(2) = 0.0038
Identities = 7/9 (77%), Positives = 9/9 (100%), Frame = +2
Query: 68 NNNNNNNNI 94
+NN+NNNNI
Sbjct: 271 SNNSNNNNI 279
Score = 40 (14.1 bits), Expect = 0.0060, Sum P(2) = 0.0060
Identities = 9/18 (50%), Positives = 11/18 (61%), Frame = +2
Query: 47 ISPKPQENNNN--NNNNI 94
I+ NNNN NNNN+
Sbjct: 268 INNSNNSNNNNITNNNNL 285
Score = 39 (13.7 bits), Expect = 0.0076, Sum P(2) = 0.0076
Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNN N
Sbjct: 179 NNNNNNIN 186
Score = 39 (13.7 bits), Expect = 0.0076, Sum P(2) = 0.0076
Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +2
Query: 68 NNNNNNNN 91
NN NNNNN
Sbjct: 219 NNINNNNN 226
Score = 39 (13.7 bits), Expect = 0.0076, Sum P(2) = 0.0076
Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +2
Query: 68 NNNNNNNN 91
N NNNNNN
Sbjct: 220 NINNNNNN 227
Score = 39 (13.7 bits), Expect = 0.0076, Sum P(2) = 0.0076
Identities = 9/20 (45%), Positives = 12/20 (60%), Frame = +2
Query: 41 DSISPKPQENNNNN---NNN 91
++I+ NNNNN NNN
Sbjct: 183 NNINSNNNNNNNNNENINNN 202
Score = 38 (13.4 bits), Expect = 0.0096, Sum P(2) = 0.0095
Identities = 6/8 (75%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
N+NN+NNN
Sbjct: 270 NSNNSNNN 277
Score = 35 (12.3 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 8/11 (72%), Positives = 8/11 (72%), Frame = +2
Query: 68 NNNNNN---NN 91
NNNNNN NN
Sbjct: 191 NNNNNNENINN 201
>gi|7489903|pir||T18289 racGAP protein - slime mold (Dictyostelium discoideum)
>gi|2190355|emb|CAA71241.1| (Y10159) racGAP [Dictyostelium
discoideum]
Length = 1335
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 1335
0 500 1000
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.00073, P = 0.00073
Identities = 32/114 (28%), Positives = 45/114 (39%), Frame = +2
Query: 20 SSKSLPMDSISPKPQENNNNNNNNIPKPMTRSEPANSYPTTFVQADTTSFKQVVQMLTGS 199
SS S+ DS NNNNNNNN P+ S + TT + + S +
Sbjct: 340 SSSSISTDSNLSSNNNNNNNNNNNNSTPILSSTSTTTTTTTTINNNNNSNNTFQPISVSK 399
Query: 200 SETAKQAAAAAXAGCXSSSSSKPXNPIPPMKSIPNK-KQXPHFSKLYERRTNSL 358
S + ++ + SSS+ NP P KS P +K+ R N L
Sbjct: 400 SSSFSKSTISTNPSSKSSSNLLISNPPPVNKSTTTATSSSPDITKIIGARPNKL 453
>gi|5032119 ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens] >gi|3005587|gb|AAC09321.1|
(AF048977) Ser/Arg-related nuclear matrix protein [Homo sapiens]
Length = 820
Frame 3 hits (HSPs): _________
Frame 2 hits (HSPs): ___ __
__________________________________________________
Database sequence: | | | | | | | 820
0 150 300 450 600 750
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0014, Sum P(2) = 0.0014
Identities = 23/69 (33%), Positives = 30/69 (43%), Frame = +3
Query: 108 RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP 287
R +P R + S +R P + P P+R+ + PPPPP A P PP P
Sbjct: 578 RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
Query: 288 *NPYPTRSS 314
P RSS
Sbjct: 638 --PPKQRSS 644
Score = 88 (31.0 bits), Expect = 0.0023, Sum P(2) = 0.0023
Identities = 28/74 (37%), Positives = 33/74 (44%), Frame = +3
Query: 99 SP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVP--RRQQSKPPPPPXPAAXPXPPRNLX 272
SP R +P R +Q K T PR + P P RR+ P PPP P PP
Sbjct: 522 SPSRSASPSPRKRQ---KETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRR 578
Query: 273 TRSHP*---NPYPTRSS 314
T S P +P P R S
Sbjct: 579 TPSPPPRRRSPSPRRYS 595
Score = 79 (27.8 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 19/56 (33%), Positives = 25/56 (44%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP 287
PR RT +R P + S P+ RR PPP A+ P PP+ + S P
Sbjct: 575 PRRRTPSPPPRRRSPSPRRYSP--PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP 628
Score = 37 (13.0 bits), Expect = 0.0014, Sum P(2) = 0.0014
Identities = 8/28 (28%), Positives = 12/28 (42%), Frame = +2
Query: 44 SISPKPQENNNNNNNNIPKPMTR-SEPA 124
S SP P +P+P + EP+
Sbjct: 207 SRSPSPAPEKKEKTPELPEPSVKVKEPS 234
Score = 36 (12.7 bits), Expect = 0.0018, Sum P(2) = 0.0018
Identities = 6/20 (30%), Positives = 10/20 (50%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNI 94
P SP PQ++N + +
Sbjct: 407 PKTRDSPTPQQSNRTRKSRV 426
>gi|12719884 ref|XP_010585.1| Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
Length = 899
Frame 3 hits (HSPs): _____ ________
Frame 2 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | | | 899
0 150 300 450 600 750
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0018, Sum P(2) = 0.0017
Identities = 23/69 (33%), Positives = 30/69 (43%), Frame = +3
Query: 108 RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP 287
R +P R + S +R P + P P+R+ + PPPPP A P PP P
Sbjct: 575 RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 634
Query: 288 *NPYPTRSS 314
P RSS
Sbjct: 635 --PPKQRSS 641
Score = 88 (31.0 bits), Expect = 0.0028, Sum P(2) = 0.0028
Identities = 28/74 (37%), Positives = 33/74 (44%), Frame = +3
Query: 99 SP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVP--RRQQSKPPPPPXPAAXPXPPRNLX 272
SP R +P R +Q K T PR + P P RR+ P PPP P PP
Sbjct: 519 SPSRSASPSPRKRQ---KETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRR 575
Query: 273 TRSHP*---NPYPTRSS 314
T S P +P P R S
Sbjct: 576 TPSPPPRRRSPSPRRYS 592
Score = 83 (29.2 bits), Expect = 1.4, P = 0.75
Identities = 24/76 (31%), Positives = 36/76 (47%), Frame = +3
Query: 96 RSP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPP--PPPXPAAXPXPPRNL 269
RSP + RT + R ++R P +S P RR + PP PPP P P ++
Sbjct: 363 RSPPKKPPKRTSSPPRKTRRLSPSAS------PPRRRHRPSPPATPPPKTRHSPTPQQSN 416
Query: 270 XTRSHP*NPYPTRSSXRI 323
TR + P R+S ++
Sbjct: 417 RTRKSRVSVSPGRTSGKV 434
Score = 79 (27.8 bits), Expect = 2.7, Sum P(2) = 0.93
Identities = 19/56 (33%), Positives = 25/56 (44%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP 287
PR RT +R P + S P+ RR PPP A+ P PP+ + S P
Sbjct: 572 PRRRTPSPPPRRRSPSPRRYSP--PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP 625
Score = 37 (13.0 bits), Expect = 0.0018, Sum P(2) = 0.0017
Identities = 8/28 (28%), Positives = 12/28 (42%), Frame = +2
Query: 44 SISPKPQENNNNNNNNIPKPMTR-SEPA 124
S SP P +P+P + EP+
Sbjct: 203 SRSPSPAPEKKEKTPELPEPSVKVKEPS 230
Score = 36 (12.7 bits), Expect = 0.0022, Sum P(2) = 0.0022
Identities = 6/20 (30%), Positives = 10/20 (50%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNI 94
P SP PQ++N + +
Sbjct: 404 PKTRHSPTPQQSNRTRKSRV 423
>gi|7949115 ref|NP_058079.1| Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101 [Mus musculus] >gi|3153821|gb|AAC17422.1|
(AF062655) plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | 897
0 150 300 450 600 750
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0028, Sum P(2) = 0.0028
Identities = 23/69 (33%), Positives = 32/69 (46%), Frame = +3
Query: 108 RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP 287
R +P R + S +R P + P P+R+ + PPPPP A P PP SH
Sbjct: 599 RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRV-SH- 656
Query: 288 *NPYPTRSS 314
+P P + S
Sbjct: 657 -SPPPKQRS 664
Score = 81 (28.5 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 28/90 (31%), Positives = 40/90 (44%), Frame = +3
Query: 96 RSP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXT 275
RSP PR RT +R P + S P+ RR PPP A+ P PP+
Sbjct: 590 RSP--TPPPRRRTPSPPPRRRSPSPRRYSP--PIQRRYSPSPPPKRRTASPPPPPKR--- 642
Query: 276 RSHP*NPYPTRSSXRIFLSXTSAEQTPXTS 365
R+ P +P P R R+ S +++P +
Sbjct: 643 RASP-SPPPKR---RVSHSPPPKQRSPTVT 668
Score = 77 (27.1 bits), Expect = 8.1, Sum P(2) = 1.0
Identities = 23/70 (32%), Positives = 31/70 (44%), Frame = +3
Query: 108 RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP 287
R Q+P T++ +R + P + + P P PPPPP P PP T S P
Sbjct: 547 RWQSPVTKSSRRRRSPSPPPARRRRS--PSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPP 604
Query: 288 *---NPYPTRSS 314
+P P R S
Sbjct: 605 PRRRSPSPRRYS 616
Score = 36 (12.7 bits), Expect = 0.0028, Sum P(2) = 0.0028
Identities = 6/20 (30%), Positives = 10/20 (50%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNI 94
P SP PQ++N + +
Sbjct: 407 PKTRHSPTPQQSNRTRKSRV 426
>gi|6649857|gb|AAF21601.1|AF009222_1 (AF009222) kexin-like serine endoprotease
[Pneumocystis carinii]
Length = 493
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 493
0 150 300 450
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.0033, Sum P(2) = 0.0033
Identities = 22/62 (35%), Positives = 29/62 (46%), Frame = +3
Query: 117 NPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPR-NLXTRSHP*N 293
+P ++ +S + P S+ S+ P P PPPPP PA P PPR L P
Sbjct: 320 DPSSQQDPDTSLSSNPTSTSSSE--PPPPSPPPPPPPPPAPAPAPAPPRPELEPEPEP-G 376
Query: 294 PYP 302
P P
Sbjct: 377 PEP 379
Score = 37 (13.0 bits), Expect = 0.0033, Sum P(2) = 0.0033
Identities = 12/28 (42%), Positives = 16/28 (57%), Frame = +2
Query: 41 DSISPK-PQENNNNNNNNIPKPMTRSEPA 124
D+ SP P N ++N P+P SEPA
Sbjct: 244 DATSPPDPDANLPPDSNADPQPP--SEPA 270
>gi|10178179|dbj|BAB11653.1| (AB013395) gene_id:MQN23.11~pir||T05009~similar to
unknown protein [Arabidopsis thaliana]
Length = 362
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 362
0 150 300
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0044, P = 0.0044
Identities = 28/86 (32%), Positives = 43/86 (50%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNIPKPMTRSEPANSYPTTFVQADTTSFKQVVQMLTGSSETAK 214
P+ S+ P ++N N P RS + PTT + DT++F+ +VQ TG+ T
Sbjct: 121 PICSV-PTDKKNGLATTRN---PKKRSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPF 176
Query: 215 QAAAAAXA-------GCXSSSSSKPXNPIP 283
+++ G SSSSS+P P P
Sbjct: 177 TGLSSSFPRSRFDLFGSSSSSSSRPMKPFP 206
>gi|8571115|gb|AAF76750.1|AF216972_1 (AF216972) p8 protein [Homo sapiens]
Length = 77
Frame 3 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.0072, P = 0.0071
Identities = 24/68 (35%), Positives = 33/68 (48%), Frame = +3
Query: 108 RDQNPRTRTQQRSSKRTQPRSSK*SKC*P--VPRRQQSKPPP--PPXPAAXPXPPRNLXT 275
R + PRTR R+ +P S ++ P VPR + + PPP PP P P PP
Sbjct: 6 RPRAPRTRYPTRAPSGPRPPSRSQAQTPPRSVPRLRPAPPPPSRPPQPRPGPAPPTPPAA 65
Query: 276 R-SHP*NP 296
R + P +P
Sbjct: 66 RPARPASP 73
>gi|12597289|gb|AAG60017.1| (AF288573) FasL isoform [Homo sapiens]
Length = 127
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.013, Sum P(2) = 0.013
Identities = 14/23 (60%), Positives = 15/23 (65%), Frame = +3
Query: 195 VPRRQ-QSKPPPPPXPAAXPXPP 260
VPRR Q +PPPPP P P PP
Sbjct: 36 VPRRPGQRRPPPPPPPPPLPPPP 58
Score = 65 (22.9 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 12/23 (52%), Positives = 12/23 (52%), Frame = +3
Query: 192 PVPRRQQSKPPPPPXPAAXPXPP 260
P RR PPPPP P P PP
Sbjct: 40 PGQRRPPPPPPPPPLPPPPPPPP 62
Score = 43 (15.1 bits), Expect = 0.013, Sum P(2) = 0.013
Identities = 9/23 (39%), Positives = 13/23 (56%), Frame = +2
Query: 266 PXNPIPPMKSIPNKKQXPHFSKL 334
P P+PP+ P KK+ H + L
Sbjct: 59 PPPPLPPLPLPPLKKRGNHSTGL 81
>gi|322747|pir||PQ0452 extensin-like protein - Persian tobacco (strain S2S3)
(fragment)
Length = 122
Frame 3 hits (HSPs): ____________________________
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 122
0 50 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 16/38 (42%), Positives = 21/38 (55%), Frame = +3
Query: 147 SKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPP 260
S + P+SS S+ P P+R+Q PPPP P PP
Sbjct: 24 SPKNSPKSSP-SRS-PPPKREQPSPPPPVKSPPPPSPP 59
Score = 69 (24.3 bits), Expect = 7.2, P = 1.0
Identities = 19/71 (26%), Positives = 30/71 (42%), Frame = +3
Query: 93 FRSP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLX 272
F+ P ++P+ + S+ P+ + S P P + PP PP P+ P PP
Sbjct: 16 FKWPFFGKSPKNSPKSSPSRSPPPKREQPS---PPPPVKSPPPPSPPPPSPSPPPPSPSP 72
Query: 273 TRSHP*NPYPT 305
P P P+
Sbjct: 73 PPPSPSPPPPS 83
Score = 38 (13.4 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 9/23 (39%), Positives = 10/23 (43%), Frame = +2
Query: 251 SSSSKPXNPIPPMKSIPNKKQXP 319
S S P +P PP S P P
Sbjct: 69 SPSPPPPSPSPPPPSPPADDMAP 91
>gi|728867|sp|P40602|APG_ARATH ANTER-SPECIFIC PROLINE-RICH PROTEIN APG
PRECURSOR >gi|99694|pir||S21961 proline-rich protein APG -
Arabidopsis thaliana >gi|22599|emb|CAA42925.1| (X60377) APG
[Arabidopsis thaliana]
Length = 534
Frame 3 hits (HSPs): ______
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 534
0 150 300 450
__________________
Annotated Domains:
DOMO DM00662: THR-PROREPEAT 18..70
DOMO DM00662: THR-PROREPEAT 71..124
Entrez active site: BY SIMILARITY. 211
Entrez active site: POTENTIAL. 511
PFAM Lipase_GDSL: Lipase/Acylhydrolase with G 204..361
PRODOM PD059631: APG_ARATH 1..67
PRODOM PD000540: H1(18) O76786(11) TONB(10) 69..195
PRODOM PD003514: 200..299
PRODOM PD108003: APG_ARATH 301..388
PRODOM PD003912: 390..524
PROSITE LIPASE_GDSL_SER: Lipolytic enzymes "G-D- 205..216
__________________
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.026, P = 0.026
Identities = 20/52 (38%), Positives = 25/52 (48%), Frame = +3
Query: 153 RTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXP-PRNLXTRSHP*NPYPT 305
+ QP+ C P P + Q KP PPP P P P P+ + S P P PT
Sbjct: 114 KPQPKPVPPPACPPTPPKPQPKPAPPPAPKPAPPPAPKPVPCPSPPKPPAPT 165
>gi|7508789|pir||T26069 hypothetical protein W02A11.3 - Caenorhabditis elegans
>gi|3880441|emb|CAB04890.1| (Z82062) contains similarity to Pfam
domain: PF00097 (Zinc finger, C3HC4 type (RING finger)),
Score=21.3, E-value=9.1e-06, N=1~cDNA EST EMBL:Z14742 comes from
this gene~cDNA EST yk82e10.3 comes from this gene~cDNA EST
yk117c5.3 comes from this gene~cDN>
Length = 489
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 489
0 150 300 450
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.030, P = 0.029
Identities = 30/121 (24%), Positives = 61/121 (50%), Frame = +2
Query: 32 LPMDSISPKPQENNNNNNNNI-PKPMTRSEP-ANSYPTTFVQADTTSFKQVVQMLTGSSE 205
+ ++ I P+PQ N+ + I P M R+ P A+++P + T V+ +L ++
Sbjct: 247 IQLNPIPPQPQTGPNSVSPTIAPGAMLRAHPLASTFP--YFSLPLTQNYPVMMVLPMAAV 304
Query: 206 TAKQAAAAAXAGCXSSSSSKPXNPIPPMKS-----IPNKKQXPHFSKLYERRTNSLNLRN 370
+ AAAAA +++++ P P PP + +P + Q ++ LY R + +N+
Sbjct: 305 AQQHAAAAAAVVAVAAAAAVPQPPPPPPQPTLHAPVPIRPQNNPYN-LYAFRNSPINVHA 363
Query: 371 SXHI 382
++
Sbjct: 364 PGYV 367
>gi|6942229|gb|AAF32367.1| (AF221552) proline-rich protein RiP-15 [Oryza
sativa]
Length = 170
Frame 3 hits (HSPs): ________________________________
Frame 2 hits (HSPs): _____________ ______ ______
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 0.034, Sum P(3) = 0.034
Identities = 13/54 (24%), Positives = 24/54 (44%), Frame = +3
Query: 102 P*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPR 263
P + P + + + + +P+ K P P+ ++ KP P P P P P+
Sbjct: 95 PYPEPKPEPKPEPKPEPKPEPKPEPEPK--PEPKPKKPKPEPKPLPKKKPEKPK 146
Score = 61 (21.5 bits), Expect = 6.9, Sum P(2) = 1.0
Identities = 14/54 (25%), Positives = 25/54 (46%), Frame = +3
Query: 96 RSP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXP 257
+ P + P+ + + + + +P+ K PVP+ + KP P P P P P
Sbjct: 41 KPPEPEPKPKPKPHPKPTPKPKPKPEPEPK--PVPK-PEPKPEPKPEPKPEPKP 91
Score = 47 (16.5 bits), Expect = 0.034, Sum P(3) = 0.034
Identities = 10/32 (31%), Positives = 14/32 (43%), Frame = +2
Query: 26 KSLPMDSISPKPQENNNNNNNNIPKPMTRSEP 121
K P +PKP+ +PKP + EP
Sbjct: 50 KPKPHPKPTPKPKPKPEPEPKPVPKPEPKPEP 81
Score = 42 (14.8 bits), Expect = 6.9, Sum P(2) = 1.0
Identities = 8/16 (50%), Positives = 9/16 (56%), Frame = +2
Query: 263 KPXNPIPPMKSIPNKK 310
KP P P K +P KK
Sbjct: 126 KPKKPKPEPKPLPKKK 141
Score = 39 (13.7 bits), Expect = 0.21, Sum P(3) = 0.19
Identities = 9/29 (31%), Positives = 11/29 (37%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNIPKPMTRSEP 121
P PKP PKP+ + EP
Sbjct: 49 PKPKPHPKPTPKPKPKPEPEPKPVPKPEP 77
Score = 38 (13.4 bits), Expect = 0.034, Sum P(3) = 0.034
Identities = 8/20 (40%), Positives = 9/20 (45%), Frame = +2
Query: 263 KPXNPIPPMKSIPNKKQXPH 322
+P P P K P K PH
Sbjct: 148 EPKAPKPKPKPKPKPKPKPH 167
Score = 37 (13.0 bits), Expect = 0.32, Sum P(3) = 0.27
Identities = 7/23 (30%), Positives = 11/23 (47%), Frame = +2
Query: 53 PKPQENNNNNNNNIPKPMTRSEP 121
P+P+ + PKP + EP
Sbjct: 45 PEPKPKPKPHPKPTPKPKPKPEP 67
Score = 37 (13.0 bits), Expect = 0.32, Sum P(3) = 0.27
Identities = 8/23 (34%), Positives = 10/23 (43%), Frame = +2
Query: 53 PKPQENNNNNNNNIPKPMTRSEP 121
PKP+ + PKP EP
Sbjct: 47 PKPKPKPHPKPTPKPKPKPEPEP 69
Score = 37 (13.0 bits), Expect = 0.32, Sum P(3) = 0.27
Identities = 9/29 (31%), Positives = 11/29 (37%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNIPKPMTRSEP 121
P PKP+ PKP + EP
Sbjct: 57 PTPKPKPKPEPEPKPVPKPEPKPEPKPEP 85
>gi|9759342|dbj|BAB09997.1| (AB006697) gb|AAF27124.1~gene_id:MAH20.4~similar to
unknown protein [Arabidopsis thaliana]
Length = 173
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.047, P = 0.046
Identities = 17/48 (35%), Positives = 27/48 (56%), Frame = +2
Query: 137 TTFVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCXSSSSSKPXNPI 280
TTFVQ DT +F+++VQ LTG +E AA ++ +P + +
Sbjct: 17 TTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAIQKRPTSKL 64
>gi|5410431|gb|AAD43054.1|AF134169_1 (AF134169) gag [Dictyostelium discoideum]
Length = 417
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 417
0 150 300
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.061, P = 0.060
Identities = 33/118 (27%), Positives = 51/118 (43%), Frame = +2
Query: 32 LPMDSISPKPQENNNNN-NNNIPKPMTRSEPANSYPTTFV-----QADTTSFKQVVQMLT 193
+ + S PKPQ+ NN NN K T+ + A S ++ QA++ S K T
Sbjct: 254 IAIKSSQPKPQQQTNNPANNKSDKQSTQEKKAQSKKSSQPLPPKNQAESQSVKPTTTTTT 313
Query: 194 GSSETAKQAAAAAXAGCXSSSSSKPXNP-IPPMKSIPNKKQXPHFSKLYERRTNSLNLRN 370
S+ K A SSS ++ P IPP S K + H + + + ++N N
Sbjct: 314 TSNAIQKDNANKTSTNIHSSSENREKTPNIPP--SHKRKNEEIHSNNEVTQLSPTINRSN 371
>gi|8778985|gb|AAF79900.1|AC022472_9 (AC022472) Contains a strong similarity to
Anther-specific proline-rich protein APG precursor from Arabidopsis
thaliana gi|728867 and contains a Lipase/Acylhydrolase domain with
GDSL-like motif PF|00657. ESTs gb|AV531882, gb|AV533240,
gb|AV534374, gb|>
Length = 1137
Frame 3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | | 1137
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.082, P = 0.079
Identities = 20/52 (38%), Positives = 25/52 (48%), Frame = +3
Query: 153 RTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXP-PRNLXTRSHP*NPYPT 305
+ QP+ C P P + Q KP PPP P P P P+ + S P P PT
Sbjct: 124 KPQPKPVPPPACPPTPPKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPPAPT 175
>gi|1730077|sp|P18160|KYK1_DICDI NON-RECEPTOR TYROSINE KINASE SPORE LYSIS A
(TYROSINE-PROTEIN KINASE 1) >gi|7489892|pir||T18276 non-receptor
tyrosine kinase - slime mold (Dictyostelium discoideum)
>gi|974334|gb|AAB41125.1| (U32174) non-receptor tyrosine kinase
[Dictyostelium discoideum]
Length = 1584
Frame 2 hits (HSPs): _____ _ ____
Annotated Domains: _________________ ________________________________
__________________________________________________
Database sequence: | | | | | 1584
0 500 1000 1500
__________________
Annotated Domains:
BLOCKS BL00107B: Protein kinases ATP-binding re 1364..1379
BLOCKS BL00107A: Protein kinases ATP-binding re 1407..1437
DOMO DM04937: 1..199
DOMO DM04937: 200..433
DOMO DM04937: 695..863
DOMO DM00004: PROTEINKINASEDOMAIN 1291..1551
Entrez Domain: POLY-ASN. 403..420
Entrez Domain: POLY-THR. 428..435
Entrez Domain: POLY-ASN. 449..480
Entrez Domain: POLY-ASN. 483..491
Entrez Domain: POLY-ASN. 494..508
Entrez Domain: POLY-ASN. 512..532
Entrez Domain: POLY-ASN. 596..600
Entrez Domain: POLY-PHE. 808..811
Entrez Domain: POLY-SER. 1026..1029
Entrez Domain: POLY-ASN. 1195..1210
Entrez Domain: POLY-GLN. 1215..1220
Entrez Domain: POLY-GLN. 1224..1233
Entrez Domain: POLY-PRO. 1266..1274
Entrez Domain: PROTEIN KINASE. 1289..1561
Entrez np-binding site: ATP (BY SIMILARITY). 1295..1303
Entrez binding site: ATP (BY SIMILARITY). 1316
Entrez active site: BY SIMILARITY. 1417
PFAM SPRY: SPRY domain 57..177
PFAM SPRY: SPRY domain 257..382
PFAM SPRY: SPRY domain 747..876
PFAM SAM: SAM domain (Sterile alpha motif) 906..970
PFAM pkinase: Eukaryotic protein kinase domai 1289..1559
PRODOM PD113282: KYK1_DICDI 1..93
PRODOM PD001178: KYK1(3) RYNR(3) P91905(2) 95..172
PRODOM PD113284: KYK1_DICDI 174..246
PRODOM PD001178: KYK1(3) RYNR(3) P91905(2) 248..366
PRODOM PD113281: KYK1_DICDI 368..401
PRODOM PD113290: KYK1_DICDI 576..748
PRODOM PD001178: KYK1(3) RYNR(3) P91905(2) 750..859
PRODOM PD113288: KYK1_DICDI 861..906
PRODOM PD009752: 908..961
PRODOM PD113286: KYK1_DICDI 963..995
PRODOM PD095339: KYK1_DICDI 1019..1193
PRODOM PD044893: KYK1_DICDI 1234..1255
PRODOM PD000001: KKIT(14) CC2(14) KPC1(13) 1290..1561
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.085, Sum P(2) = 0.081
Identities = 34/97 (35%), Positives = 42/97 (43%), Frame = +2
Query: 68 NNNNNNNNIPKPMTRSEPANSYPTTFVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCX 247
NNNNNNNNI K + + +SY Q+ T +Q + T +S T K
Sbjct: 1203 NNNNNNNNI-KANQQQQQQSSYQ----QSQTQQQQQHITS-TSTSTTNKWIDPFGGWETQ 1256
Query: 248 SSSSSKPXNPIPPMKSIPNKKQXPHFSKLYERRTNSL 358
SS S P P PP P Q P S+ YE N L
Sbjct: 1257 SSLSHPPSRPPPPP---PPPPQLPVRSE-YEIDFNEL 1289
Score = 55 (19.4 bits), Expect = 0.085, Sum P(2) = 0.081
Identities = 10/17 (58%), Positives = 11/17 (64%), Frame = +2
Query: 41 DSISPKPQENNNNNNNN 91
+ IS NNNNNNNN
Sbjct: 444 EDISSNNNNNNNNNNNN 460
Score = 53 (18.7 bits), Expect = 0.13, Sum P(2) = 0.13
Identities = 10/21 (47%), Positives = 13/21 (61%), Frame = +2
Query: 32 LPMDSISPKPQENNNNNNNNI 94
+P + + NNNNNNNNI
Sbjct: 401 VPNGNNNNNSNNNNNNNNNNI 421
Score = 53 (18.7 bits), Expect = 0.13, Sum P(2) = 0.13
Identities = 13/31 (41%), Positives = 17/31 (54%), Frame = +2
Query: 2 FFSLRLSSKSLPMDSIS-PKPQENNNNNNNN 91
F + L K++ SI P NNN+NNNN
Sbjct: 384 FSQVTLMLKNVNSTSILVPNGNNNNNSNNNN 414
Score = 52 (18.3 bits), Expect = 0.17, Sum P(2) = 0.16
Identities = 9/9 (100%), Positives = 9/9 (100%), Frame = +2
Query: 68 NNNNNNNNI 94
NNNNNNNNI
Sbjct: 525 NNNNNNNNI 533
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 449 NNNNNNNN 456
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 455 NNNNNNNN 462
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 456 NNNNNNNN 463
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 457 NNNNNNNN 464
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 458 NNNNNNNN 465
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 459 NNNNNNNN 466
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 460 NNNNNNNN 467
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 501 NNNNNNNN 508
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 521 NNNNNNNN 528
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 522 NNNNNNNN 529
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 523 NNNNNNNN 530
Score = 48 (16.9 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
NNNNNNNN
Sbjct: 524 NNNNNNNN 531
Score = 43 (15.1 bits), Expect = 1.4, Sum P(2) = 0.75
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +2
Query: 68 NNNNNNNN 91
N+NNNNNN
Sbjct: 499 NSNNNNNN 506
Score = 42 (14.8 bits), Expect = 1.7, Sum P(2) = 0.82
Identities = 8/24 (33%), Positives = 15/24 (62%), Frame = +2
Query: 20 SSKSLPMDSISPKPQENNNNNNNN 91
+S + ++I+ NN+N+NNN
Sbjct: 480 NSSNTNNNNINNTTNNNNSNSNNN 503
Score = 41 (14.4 bits), Expect = 2.2, Sum P(2) = 0.89
Identities = 9/17 (52%), Positives = 10/17 (58%), Frame = +2
Query: 41 DSISPKPQENNNNNNNN 91
+S S N NNNNNN
Sbjct: 510 NSNSNSNNNNINNNNNN 526
Score = 37 (13.0 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 6/10 (60%), Positives = 7/10 (70%), Frame = +2
Query: 59 PQENNNNNNN 88
P + NNNNN
Sbjct: 591 PPSSTNNNNN 600
>gi|123705|sp|P15340|HSP_CHICK SPERM HISTONE (PROTAMINE) (GALLINE)
>gi|104836|pir||A34326 protamine - chicken
>gi|609436|gb|AAA58721.1| (L38713) protamine [Gallus gallus]
>gi|609437|gb|AAA78951.1| (M28100) protamine [Gallus gallus]
Length = 62
Frame 3 hits (HSPs): ____________________
Frame 1 hits (HSPs): ____________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
__________________
Annotated Domains:
DOMO DM01168: PROTAMINEP1 1..60
Entrez phosphorylation site: (POTENTIAL). 9
PFAM protamine_P1: Protamine P1 1..60
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..60
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 11/25 (44%), Positives = 17/25 (68%), Frame = +3
Query: 96 RSP*RDQNPRTRTQQR-SSKRTQPR 167
RS R ++PR+R ++R S +R PR
Sbjct: 6 RSRTRSRSPRSRRRRRRSGRRRSPR 30
Score = 40 (14.1 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 11/25 (44%), Positives = 15/25 (60%), Frame = +1
Query: 175 SSPNANRFLGDSK---ASRRRRRRR 240
S+ + R +G + SRRRRRRR
Sbjct: 37 SARRSRRSVGGRRRRYGSRRRRRRR 61
>gi|226743|prf||1604369A sulfated surface glycoprotein SSG185 [Volvox carteri]
Length = 453
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | || 453
0 150 300 450
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 18/44 (40%), Positives = 21/44 (47%), Frame = +3
Query: 192 PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP*NPYPTRSSXRI 323
P P PPPPP P P PPR + S P P P+ S+ I
Sbjct: 278 PPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPPVPPPPSPSAVTI 321
Score = 35 (12.3 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 10/34 (29%), Positives = 16/34 (47%), Frame = +2
Query: 38 MDSISPKPQENNNNNNNNIPKPMTRSEPANSYPT 139
++ I P P NN+ P+P S P + P+
Sbjct: 217 VNPIGPAP---NNSPLPPSPQPTASSRPPSPPPS 247
>gi|6730734|gb|AAF27124.1|AC018849_12 (AC018849) unknown protein; 73942-74475
[Arabidopsis thaliana]
Length = 177
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.20, P = 0.18
Identities = 25/89 (28%), Positives = 46/89 (51%), Frame = +2
Query: 104 MTRSEPAN--SYPTT-FVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCXSSSSSKPXN 274
M+ +P + + P T FVQAD ++F+ +VQ LTG+ ++ +A + ++ P
Sbjct: 1 MSHQQPPSYATEPNTMFVQADPSNFRNIVQKLTGAPPDISSSSFSAVS---AAHQKLPLT 57
Query: 275 PIPPMKSIPNKKQXPHFSKLYERRTNSLNLRN 370
P P + ++Q SK E + N++ N
Sbjct: 58 PKKPAFKLHERRQS---SKKMELKVNNITNPN 86
>gi|12003390|gb|AAG43552.1|AF211534_1 (AF211534) Avr9/Cf-9 rapidly elicited
protein 169 [Nicotiana tabacum]
Length = 124
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 124
0 50 100
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.21, P = 0.19
Identities = 15/32 (46%), Positives = 21/32 (65%), Frame = +2
Query: 137 TTFVQADTTSFKQVVQMLTGSSETAKQAAAAA 232
T +++ D +SFK VVQ LTG + T + AAA
Sbjct: 19 TQYIETDASSFKSVVQRLTGKNSTVEMEVAAA 50
>gi|9631099 ref|NP_047769.1| LdOrf-132 [Lymantria dispar nucleopolyhedrovirus]
>gi|7460681|pir||T30482 zink finger protein ORF132 - Lymantria
dispar nuclear polyhedrosis virus
>gi|3822367|gb|AAC70318.1|AAC70318 (AF081810) LdOrf-132 [Lymantria
dispar nucleopolyhedrovirus]
Length = 81
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.22, P = 0.20
Identities = 16/31 (51%), Positives = 18/31 (58%), Frame = +3
Query: 171 SK*SKC*PVPRRQQSKPPPPPXPAAXPXPPR 263
SK +C PV RRQ + PPPPP P PR
Sbjct: 28 SKLVRC-PVCRRQFAAPPPPPPRRPAPESPR 57
>gi|6759343|dbj|BAA90294.1| (AB035138) Fas ligand [Macaca fascicularis]
>gi|6759345|dbj|BAA90295.1| (AB035139) Fas ligand [Macaca mulatta]
>gi|6759347|dbj|BAA90296.1| (AB035140) Fas ligand [Macaca
nemestrina]
Length = 280
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 280
0 50 100 150 200 250
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.24, Sum P(2) = 0.21
Identities = 14/23 (60%), Positives = 15/23 (65%), Frame = +3
Query: 195 VPRRQ-QSKPPPPPXPAAXPXPP 260
VPRR Q +PPPPP P P PP
Sbjct: 36 VPRRPGQRRPPPPPPPPPLPPPP 58
Score = 46 (16.2 bits), Expect = 0.24, Sum P(2) = 0.21
Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = +2
Query: 266 PXNPIPPMKSIPNKKQXPHFSKL 334
P +P+PP+ P KK+ H + L
Sbjct: 58 PPSPLPPLPLPPLKKRGNHSTGL 80
>gi|1085374|pir||S52796 prpL2 protein - human (fragment)
Length = 403
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): _____ _____
__________________________________________________
Database sequence: | | | | 403
0 150 300
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.29, Sum P(2) = 0.25
Identities = 26/85 (30%), Positives = 36/85 (42%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPP-RNLXTRSHP*NP 296
P + + + Q S S P+P +S P PPP P+ P PP R+ RS P P
Sbjct: 232 PSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPVPSERPPPPVRDPPGRSGPLPP 291
Query: 297 YPTRS-SXRIFLSXTSAEQTPXTSG 368
P S + + + Q P SG
Sbjct: 292 PPPVSRNGSTSRALPATPQLPSRSG 316
Score = 44 (15.5 bits), Expect = 0.29, Sum P(2) = 0.25
Identities = 8/31 (25%), Positives = 15/31 (48%), Frame = +2
Query: 29 SLPMDSISPKPQENNNNNNNNIPKPMTRSEP 121
S+ +++ P P +NN + P+P P
Sbjct: 185 SIHREAVPPPPPQNNKPPVPSTPRPSAPHRP 215
Score = 37 (13.0 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 10/35 (28%), Positives = 20/35 (57%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNIPKPMTRSEPANSYPT 139
P+ S +P+P +++ +N + P P +P+ PT
Sbjct: 95 PVPS-TPRPIQSSLHNRGSPPVPGGPRQPSPG-PT 127
>gi|7271071|emb|CAB77657.1| (AJ390520) hypothetical protein [Candida albicans]
Length = 122
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 122
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.30, P = 0.26
Identities = 26/85 (30%), Positives = 37/85 (43%), Frame = +2
Query: 65 ENNNNNNNNIPKPMTRSEPANSYPT-TF----VQADTTSFKQVVQMLTGSSETAKQAAAA 229
E +NNNNN+ P T+S AN T V + TT K V SS + ++
Sbjct: 2 EKSNNNNNSKPSDSTKSTLANDETRKTLDPKGVGSTTTGDKDTVSSDKASSPIEDKESSP 61
Query: 230 AXAGCXSSSSSKPXNPIPPMKSIPN 304
+ AG +S+ S P K + N
Sbjct: 62 SLAGSSTSTPSGTDKKTSPKKLVTN 86
>gi|12322223|gb|AAG51144.1|AC079283_1 (AC079283) GT-like trihelix DNA-binding
protein, putative [Arabidopsis thaliana]
Length = 603
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ______ ___
__________________________________________________
Database sequence: | | | | || 603
0 150 300 450 600
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.31, Sum P(3) = 0.27
Identities = 20/67 (29%), Positives = 32/67 (47%), Frame = +2
Query: 56 KPQENNNNNNNN--------IPKPMTR---SEPANSYPTTFVQADTTSFKQVVQMLTGSS 202
+PQ+NNNNNNNN P P+T + P++S P Q + SF + +
Sbjct: 164 RPQQNNNNNNNNNNNSSIFSTPPPVTTVMPTLPSSSIPPYTQQINVPSFPNISGDFLSDN 223
Query: 203 ETAKQAA 223
T+ ++
Sbjct: 224 STSSSSS 230
Score = 47 (16.5 bits), Expect = 0.31, Sum P(3) = 0.27
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = +3
Query: 207 QQSKPPPPPXPAAXP 251
Q+S PP PP P P
Sbjct: 363 QRSPPPQPPAPLPQP 377
Score = 44 (15.5 bits), Expect = 0.61, Sum P(3) = 0.46
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = +3
Query: 210 QSKPPPPPXPAAXPXP 257
Q PPP P PA P P
Sbjct: 363 QRSPPPQP-PAPLPQP 377
Score = 36 (12.7 bits), Expect = 0.31, Sum P(3) = 0.27
Identities = 12/25 (48%), Positives = 16/25 (64%), Frame = +2
Query: 248 SSSSS---KPXNPIPPMKSIPNKKQXP 319
SSSSS KP N +P M + ++Q P
Sbjct: 510 SSSSSGLVKPDNSVPLM--VQPEQQWP 534
>gi|322749|pir||JQ1686 extensin-like protein precursor - Persian tobacco
(strain S6S6) >gi|258215|gb|AAB23813.1| (S48582) NaPRP3=putative
proline-rich protein [Nicotiana alata, style, Peptide, 151 aa]
Length = 151
Frame 3 hits (HSPs): ___________________
Annotated Domains: ____________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
DOMO DM05812: 1..61
Entrez domain: signal sequence 1..21
__________________
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.40, P = 0.33
Identities = 21/55 (38%), Positives = 28/55 (50%), Frame = +3
Query: 147 SKRTQPRSSK*SKC*PVPRRQQSKPPPP----PXPAAXPXPPRNLXTRSHP*NPYPT 305
S + P+SS S+ P P+R+Q PPPP P P+ P PP P P P+
Sbjct: 53 SPKNSPKSSP-SRS-PPPKREQPSPPPPVKSPPPPSPSPPPPSPPPPSPSPPPPSPS 107
Score = 71 (25.0 bits), Expect = 7.4, P = 1.0
Identities = 21/56 (37%), Positives = 28/56 (50%), Frame = +3
Query: 147 SKRTQPRSSK*SKC*PVPRRQQSKPPPP----PXPAAXPXPPRNL--XTRSHP*NPYP 302
S + P+SS S+ P P+R+Q PPPP P P+ P PP P +P P
Sbjct: 53 SPKNSPKSSP-SRS-PPPKREQPSPPPPVKSPPPPSPSPPPPSPPPPSPSPPPPSPSP 108
>gi|10727639|gb|AAG22283.1| (AE003826) CG18807 gene product [Drosophila
melanogaster]
Length = 94
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.45, P = 0.36
Identities = 19/39 (48%), Positives = 21/39 (53%), Frame = +3
Query: 192 PVPRRQQS-KPP-PPPXPAAXPXPPRNLXTRSHP*NP-YPTR 308
P PR Q +PP PPP P P PPR HP P +P R
Sbjct: 33 PPPRPPQPPRPPHPPPHPPRPPHPPRP----PHPPRPPHPPR 70
Score = 64 (22.5 bits), Expect = 7.8, P = 1.0
Identities = 19/57 (33%), Positives = 23/57 (40%), Frame = +3
Query: 138 QRSSKRTQP--RSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP*NPYP 302
+R +R QP R + P P R PP PP P P PP P P+P
Sbjct: 18 RRRGQRRQPFYRPYQPPPRPPQPPRPPHPPPHPPRPPHPPRPPHPPRPPHPPRPPHP 74
>gi|112945|sp|P14196|AAC2_DICDI AAC-RICH MRNA CLONE AAC11 PROTEIN
>gi|84120|pir||S05355 hypothetical protein (clone AAC11) - slime
mold (Dictyostelium discoideum) (fragment)
>gi|7174|emb|CAA34529.1| (X16522) coding region (AA 448)
[Dictyostelium discoideum]
Length = 448
Frame 2 hits (HSPs): ___ __________
Annotated Domains: ___ ____ ______________
__________________________________________________
Database sequence: | | | | 448
0 150 300
__________________
Annotated Domains:
Entrez Domain: GLN-RICH. 5..25
Entrez Domain: ASN-RICH. 115..144
Entrez Domain: ASN-RICH. 268..384
__________________
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 0.46, Sum P(2) = 0.37
Identities = 24/86 (27%), Positives = 33/86 (38%), Frame = +2
Query: 68 NNNNNNNNIPKPMTRSEPANSYPTTFVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCX 247
NN+NNNNN P + N+ T ++TT+ + + A G
Sbjct: 358 NNSNNNNN---PNNNNHQNNNNNNTSNNSNTTTATTTAPGGNNLTNSLNNAGNLGNLGRV 414
Query: 248 SS-SSSKPXNPIPPMKSIPNKKQXPHF 325
S SS P NP KS P+ F
Sbjct: 415 SGLHSSDPNNP-NAQKSFPDSTNTMDF 440
Score = 62 (21.8 bits), Expect = 0.46, Sum P(2) = 0.37
Identities = 12/23 (52%), Positives = 15/23 (65%), Frame = +2
Query: 23 SKSLPMDSISPKPQENNNNNNNN 91
S ++ S P+P NNNNNNNN
Sbjct: 101 SLAIQNQSSLPQPINNNNNNNNN 123
>gi|4557329 ref|NP_000630.1| apoptosis (APO-1) antigen ligand 1 [Homo sapiens]
>gi|11428080 ref|XP_002137.1| apoptosis (APO-1) antigen ligand 1
[Homo sapiens] >gi|1345957|sp|P48023|FASL_HUMAN FAS ANTIGEN LIGAND
(APOPTOSIS ANTIGEN LIGAND) (APTL) >gi|631138|pir||JC2340 Fas ligand
- human >gi|7512421|pir||I38707 Fas ligand - human
>gi|595431|gb|AAC50124.1| (U11821) Fas ligand [Homo sapiens]
>gi|624628|gb|AAC50071.1| (U08137) Fas ligand [Homo sapiens]
>gi|887456|emb|CAA61474.1| (X89102) Fasligand [Homo sapiens]
>gi|1369902|dbj|BAA07320.1| (D38122) Fas ligand [Homo sapiens]
>gi|2168140|emb|CAB09424.1| (Z96050) FAS [Homo sapiens]
Length = 281
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 281
0 50 100 150 200 250
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.48, Sum P(2) = 0.38
Identities = 14/23 (60%), Positives = 15/23 (65%), Frame = +3
Query: 195 VPRRQ-QSKPPPPPXPAAXPXPP 260
VPRR Q +PPPPP P P PP
Sbjct: 36 VPRRPGQRRPPPPPPPPPLPPPP 58
Score = 65 (22.9 bits), Expect = 7.0, Sum P(2) = 1.0
Identities = 12/23 (52%), Positives = 12/23 (52%), Frame = +3
Query: 192 PVPRRQQSKPPPPPXPAAXPXPP 260
P RR PPPPP P P PP
Sbjct: 40 PGQRRPPPPPPPPPLPPPPPPPP 62
Score = 43 (15.1 bits), Expect = 0.48, Sum P(2) = 0.38
Identities = 9/23 (39%), Positives = 13/23 (56%), Frame = +2
Query: 266 PXNPIPPMKSIPNKKQXPHFSKL 334
P P+PP+ P KK+ H + L
Sbjct: 59 PPPPLPPLPLPPLKKRGNHSTGL 81
>gi|2760483|emb|CAA60014.1| (X86019) SH3-domain interacting protein [Homo
sapiens]
Length = 494
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ____ ____
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.48, Sum P(2) = 0.38
Identities = 26/85 (30%), Positives = 36/85 (42%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPP-RNLXTRSHP*NP 296
P + + + Q S S P+P +S P PPP P+ P PP R+ RS P P
Sbjct: 323 PSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPVPSERPPPPVRDPPGRSGPLPP 382
Query: 297 YPTRS-SXRIFLSXTSAEQTPXTSG 368
P S + + + Q P SG
Sbjct: 383 PPPVSRNGSTSRALPATPQLPSRSG 407
Score = 44 (15.5 bits), Expect = 0.48, Sum P(2) = 0.38
Identities = 8/31 (25%), Positives = 15/31 (48%), Frame = +2
Query: 29 SLPMDSISPKPQENNNNNNNNIPKPMTRSEP 121
S+ +++ P P +NN + P+P P
Sbjct: 276 SIHREAVPPPPPQNNKPPVPSTPRPSAPHRP 306
Score = 37 (13.0 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 10/35 (28%), Positives = 20/35 (57%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNIPKPMTRSEPANSYPT 139
P+ S +P+P +++ +N + P P +P+ PT
Sbjct: 186 PVPS-TPRPIQSSLHNRGSPPVPGGPRQPSPG-PT 218
>gi|11358976|pir||T17456 cell surface protein DTFA - slime mold (Dictyostelium
discoideum) >gi|4063399|gb|AAC98306.1| (AF102575) cell surface
protein DTFA [Dictyostelium discoideum]
Length = 1402
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 1402
0 500 1000
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.58, Sum P(2) = 0.44
Identities = 15/44 (34%), Positives = 28/44 (63%), Frame = +3
Query: 108 RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXP 239
+ Q+ +++ QQ+ S ++ + + SK P ++QQ +PPPPP P
Sbjct: 209 KKQSSQSQLQQQLSSQSLQQIQQKSKQPPPQQQQQQQPPPPPIP 252
Score = 53 (18.7 bits), Expect = 0.58, Sum P(2) = 0.44
Identities = 10/19 (52%), Positives = 12/19 (63%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNN 91
P S +P P NNNN+N N
Sbjct: 111 PSLSSTPSPLPNNNNSNEN 129
Score = 49 (17.2 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 11/25 (44%), Positives = 16/25 (64%), Frame = +2
Query: 17 LSSKSLPMDSISPKPQENNNNNNNN 91
L++ SL + SP P NN+N N+N
Sbjct: 108 LNTPSLS-STPSPLPNNNNSNENDN 131
>gi|6630699|dbj|BAA88545.1| (AP000969) hypothetical protein [Oryza sativa]
>gi|6721536|dbj|BAA89566.1| (AP001073) hypothetical protein [Oryza
sativa]
Length = 114
Frame -1 hits (HSPs): _____________________
Frame -3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 0.59, Sum P(2) = 0.45
Identities = 20/48 (41%), Positives = 26/48 (54%), Frame = -1
Query: 232 GGGGGLLCCLRGTG*HLDYLLERG--CVRLDERCWVRVRGF*SRHGLRNI 89
G GGG G G D L++RG C+R ++ W+R RG RHG I
Sbjct: 39 GSGGGCEGIAYGVGDGFDSLIDRGVSCIR--KQRWLR-RGV-GRHGEEGI 84
Score = 37 (13.0 bits), Expect = 0.59, Sum P(2) = 0.45
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = -3
Query: 356 GSLFCARXA*KNAAAASCWVWISWVGSG 273
GSL CA + + +S WV VGSG
Sbjct: 17 GSLGCAPSSGSSDRFSSSWVN---VGSG 41
>gi|1711527|sp|P52172|SRP_DROME BOX A-BINDING FACTOR (ABF) (SERPENT PROTEIN)
(GATA-BINDING FACTOR-B) (TRANSCRIPTION FACTOR GATA-B) (DGATA-B)
>gi|542546|pir||S40382 box A-binding factor - fruit fly (Drosophila
melanogaster) >gi|441492|emb|CAA53807.1| (X76217) a box binding
factor (ABF), also called dGATA-b [Drosophila melanogaster]
Length = 779
Frame 2 hits (HSPs): _____ ___
Annotated Domains: ______________ _____________________ _____________
__________________________________________________
Database sequence: | | | | | | | 779
0 150 300 450 600 750
__________________
Annotated Domains:
DOMO DM00122: GATA-TYPEZINCFINGERDOMAIN 312..368
Entrez Zinc finger region: GATA-TYPE. 319..343
Entrez Domain: POLY-ALA. 52..55
Entrez Domain: POLY-ALA. 62..71
Entrez Domain: POLY-GLN. 81..86
Entrez Domain: POLY-GLY. 132..137
Entrez Domain: POLY-ALA. 206..215
Entrez Domain: POLY-GLY. 254..257
Entrez Domain: POLY-GLN. 439..445
Entrez Domain: POLY-GLN. 482..487
Entrez Domain: POLY-ASN. 539..545
Entrez Domain: POLY-ASN. 550..557
Entrez Domain: POLY-SER. 578..585
Entrez Domain: POLY-ALA. 602..614
Entrez Domain: POLY-GLN. 700..714
Entrez Domain: POLY-GLN. 739..744
PFAM GATA: GATA zinc finger 315..354
PRINTS GATAZNFINGER1: GATA-binding transcriptio 315..332
PRINTS GATAZNFINGER2: GATA-binding transcriptio 333..350
PRODOM PD048754: SRP_DROME 1..40
PRODOM PD000540: H1(18) O76786(11) TONB(10) 45..110
PRODOM PD029385: Q94884(1) SRP(1) 113..204
PRODOM PD028522: Q94884(1) SRP(1) 242..316
PRODOM PD000513: GAT3(10) GAT2(8) GAT6(8) 318..346
PRODOM PD006622: GAT3(5) GAT1(4) GAT2(4) 348..383
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 400..487
PRODOM PD034362: Q94884(1) SRP(1) 489..537
PRODOM PD032671: Q94884(1) SRP(1) 615..651
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 653..747
PRODOM PD188651: Q94884(1) SRP(1) 749..778
PROSITE CYTOCHROME_C: Cytochrome c family heme-b 319..324
PROSITE GATA_ZN_FINGER: GATA-type zinc finger do 319..343
PROSITE LECTIN_LEGUME_BETA: Legume lectins beta- 402..408
PROSITE RECEPTOR_CYTOKINES_1: Growth factor and 18..30
__________________
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.60, Sum P(2) = 0.45
Identities = 23/62 (37%), Positives = 32/62 (51%), Frame = +2
Query: 68 NNNNNNNNIPKPMTRSEPANSYP-----TTFVQADTTSFKQVVQMLTGSSETAKQAAAAA 232
NNNNNNNN ++ Y ++ +D+TS Q++ L +S TA AAAAA
Sbjct: 550 NNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSDSTSDHQLLAQLLPNSITAAAAAAAA 609
Query: 233 XA 238
A
Sbjct: 610 AA 611
Score = 47 (16.5 bits), Expect = 0.60, Sum P(2) = 0.45
Identities = 10/39 (25%), Positives = 15/39 (38%), Frame = +2
Query: 263 KPXNPIPPMKSIPNKKQXPHFSKLYERRTNSLNLRNSXH 379
KP P PP P + + P K+ E + + H
Sbjct: 672 KPTRPSPPYYLTPEEDEQPALIKMEEMDQSQQQQQQQQH 710
>gi|7485016|pir||A71415 hypothetical protein - Arabidopsis thaliana
>gi|2244869|emb|CAB10291.1| (Z97337) hypothetical protein
[Arabidopsis thaliana] >gi|7268258|emb|CAB78554.1| (AL161540)
hypothetical protein [Arabidopsis thaliana]
Length = 193
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.79, P = 0.55
Identities = 26/99 (26%), Positives = 45/99 (45%), Frame = +2
Query: 80 NNNNIPKPMTR-SEPANSYPTTFVQADTTSFKQVVQMLTGSSETAKQAAAAAXAGCXSSS 256
+N + KP R S + PTT DT +F+ +VQ TG +A ++ +G S +
Sbjct: 42 DNRRVAKPTRRRSRASRRTPTTLFNTDTANFRAMVQQFTGGP-SAVAFGSSPSSG-FSLT 99
Query: 257 SSKPXNPIP--PMKSIPNKKQXPHFSKLYERRTNSLNLRNS 373
SS P + P + + Q H + ++R + N+
Sbjct: 100 SSDPTAGVSSSPWQYANLQNQMAHNELMQQQRPYMFSSSNN 140
>gi|5852187|emb|CAB55425.1| (AL117265) zhb0017.1 [Oryza sativa]
Length = 202
Frame 2 hits (HSPs): _________ _______
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.85, Sum P(2) = 0.57
Identities = 18/33 (54%), Positives = 23/33 (69%), Frame = +2
Query: 137 TTFVQADTTSFKQVVQMLTGS--SETAKQAAAA 229
TTFVQAD +F+ +VQ LTG+ S +K A AA
Sbjct: 33 TTFVQADPATFRALVQKLTGAPGSGGSKPAPAA 65
Score = 38 (13.4 bits), Expect = 0.85, Sum P(2) = 0.57
Identities = 8/26 (30%), Positives = 14/26 (53%), Frame = +2
Query: 218 AAAAAXAGCXSSSSSKPXNPIPPMKS 295
A++++ + SSS +P PP S
Sbjct: 116 ASSSSSSSSSLPSSSSSLSPSPPASS 141
>gi|11281679|pir||T47695 hypothetical protein T22E16.220 - Arabidopsis thaliana
>gi|7076799|emb|CAB75914.1| (AL132975) putative protein
[Arabidopsis thaliana]
Length = 310
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.88, P = 0.59
Identities = 26/99 (26%), Positives = 44/99 (44%), Frame = +2
Query: 35 PMDSISPKPQENNNNNNNNIPKPMTRSEPA--NSYPTTFVQADTTSFKQVVQMLTGSSET 208
P+ S +P N+NNNN P MTRS+P + + T + T + + + +
Sbjct: 18 PVTSSAPSLHHRNSNNNN--PPTMTRSDPRLDHDFTTNNSGSPNTQTQSQEEQNSRDEQP 75
Query: 209 AKQAAAAAXA------GCXSSSSSKPXNPIPPMKSIPNKKQ 313
A + + + + G S +KP +P+ K PN Q
Sbjct: 76 AVEPGSGSGSTGRRPRGRPPGSKNKPKSPVVVTKESPNSLQ 116
>gi|4138732|emb|CAA76742.1| (Y17332) proline-rich protein [Zea mays]
>gi|7838273|emb|CAB91647.1| (AJ130830) cell wall protein, putative
[Zea mays]
Length = 378
Frame 3 hits (HSPs): ______________________________
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 378
0 150 300
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 0.92, Sum P(2) = 0.60
Identities = 16/61 (26%), Positives = 25/61 (40%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPR-RQQSKPPPPPXPAAXPXPPRNLXTRSHP*NP 296
P+ + + + + +P+ K P P + + KP P P P P P R P P
Sbjct: 191 PQPKPEPKPEPKPEPKPEPQPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPRPEP-KP 249
Query: 297 YP 302
P
Sbjct: 250 EP 251
Score = 61 (21.5 bits), Expect = 1.7, Sum P(2) = 0.82
Identities = 16/61 (26%), Positives = 25/61 (40%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPRRQ-QSKPPPPPXPAAXPXPPRNLXTRSHP*NP 296
P + + + + +P+ K P P+ + Q KP P P P P P + P P
Sbjct: 139 PEPKPEPKPEHKPEPKPEPKPKPKPEPKPEPQPKPEPKPEPKPEPKPEPKPEPQPKP-EP 197
Query: 297 YP 302
P
Sbjct: 198 KP 199
Score = 58 (20.4 bits), Expect = 0.92, Sum P(2) = 0.60
Identities = 13/38 (34%), Positives = 18/38 (47%), Frame = +2
Query: 26 KSLPMDSISPKPQENNNNNNNNIPKPMTRSEPANSYPT 139
K +P P+PQ N +PKP +S+P PT
Sbjct: 78 KPMPHPEPKPEPQPKPNPEPQPMPKPQPKSKP-EPLPT 114
Score = 57 (20.1 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 16/61 (26%), Positives = 22/61 (36%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPR-RQQSKPPPPPXPAAXPXPPRNLXTRSHP*NP 296
P+ + + P+ K P P + + KP P P P P P R P P
Sbjct: 247 PKPEPKPEPKPKPDPKPEPQPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPRPEP-EP 305
Query: 297 YP 302
P
Sbjct: 306 KP 307
Score = 56 (19.7 bits), Expect = 6.8, Sum P(2) = 1.0
Identities = 12/47 (25%), Positives = 21/47 (44%), Frame = +3
Query: 120 PRTRTQQRSSKRTQPRSSK*SKC*PVPRRQ-QSKPPPPPXPAAXPXP 257
P+ + + + +P+ + P P+ + Q KP P P P P P
Sbjct: 313 PKPKPEPEPQPKPEPKPDPKPEPKPEPKPEPQPKPEPKPEPKPQPEP 359
>gi|1556394|emb|CAA68943.1| (Y07662) GATA factor [Drosophila melanogaster]
Length = 949
Frame 2 hits (HSPs): _____ ___
__________________________________________________
Database sequence: | | | | | | | | 949
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.92, Sum P(2) = 0.60
Identities = 23/62 (37%), Positives = 32/62 (51%), Frame = +2
Query: 68 NNNNNNNNIPKPMTRSEPANSYP-----TTFVQADTTSFKQVVQMLTGSSETAKQAAAAA 232
NNNNNNNN ++ Y ++ +D+TS Q++ L +S TA AAAAA
Sbjct: 720 NNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSDSTSDHQLLAQLLPNSITAAAAAAAA 779
Query: 233 XA 238
A
Sbjct: 780 AA 781
Score = 47 (16.5 bits), Expect = 0.92, Sum P(2) = 0.60
Identities = 10/39 (25%), Positives = 15/39 (38%), Frame = +2
Query: 263 KPXNPIPPMKSIPNKKQXPHFSKLYERRTNSLNLRNSXH 379
KP P PP P + + P K+ E + + H
Sbjct: 842 KPTRPSPPYYLTPEEDEQPALIKMEEMDQSQQQQQQQQH 880
>gi|102984|pir||S10120 Balbiani ring protein 1-beta (clone 18-1) - midge
(Chironomus pallidivittatus) (fragment) >gi|683543|emb|CAA31446.1|
(X13032) giant secretory protein [Chironomus pallidivittatus]
Length = 85
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 0.94, P = 0.61
Identities = 18/61 (29%), Positives = 29/61 (47%), Frame = +3
Query: 114 QNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPA-AXPXPPRNLXTRSHP* 290
+N R + + SK + P+ + SK P P + + P P P+ + P P R +R P
Sbjct: 24 KNCRCTSANKPSK-SGPKPERPSKSGPKPEKPSNSGPKPEKPSKSGPKPERPSKSRPKPS 82
Query: 291 NP 296
P
Sbjct: 83 RP 84
>gi|19917|emb|CAA78392.1| (Z14014) Pistil extensin like protein, partial CDS
only [Nicotiana tabacum]
Length = 109
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 1.1, P = 0.68
Identities = 17/38 (44%), Positives = 17/38 (44%), Frame = +3
Query: 192 PVPR-RQQSKPPPPPXPAAXPXPPRNLXTRSHP*NPYP 302
P PR R PPPPP P P PP R P P P
Sbjct: 72 PRPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPPPP 109
Score = 69 (24.3 bits), Expect = 3.8, P = 0.98
Identities = 16/37 (43%), Positives = 17/37 (45%), Frame = +3
Query: 153 RTQPRSSK*SKC*PVPR-RQQSKPPPPPXPAAXPXPP 260
R +PR P PR R PPPPP P P PP
Sbjct: 71 RPRPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRPSPP 107
>gi|1914851|gb|AAC53191.1| (U92454) WW domain binding protein 5; WBP5 [Mus
musculus]
Length = 61
Frame 3 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.2, P = 0.70
Identities = 12/23 (52%), Positives = 13/23 (56%), Frame = +3
Query: 219 PPPPPXPAAXPXPPRNLXTRSHP 287
PPPPP P P PPR L + P
Sbjct: 11 PPPPPPPPPPPLPPRFLEIIAFP 33
Score = 57 (20.1 bits), Expect = 8.0, P = 1.0
Identities = 11/20 (55%), Positives = 11/20 (55%), Frame = +3
Query: 219 PPPPPXPAAXPXPPRNLXTR 278
PPPPP P P PP L R
Sbjct: 6 PPPPPPPPPPPPPPPPLPPR 25
>gi|102985|pir||S10119 Balbiani ring protein 1-beta (clone 16-5) - midge
(Chironomus pallidivittatus) (fragment) >gi|683542|emb|CAA31445.1|
(X13031) giant secretory protein [Chironomus pallidivittatus]
Length = 85
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.2, P = 0.70
Identities = 18/61 (29%), Positives = 28/61 (45%), Frame = +3
Query: 114 QNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPA-AXPXPPRNLXTRSHP* 290
+N R + + SK + P+ + SK P P + P P P+ + P P R +R P
Sbjct: 24 KNCRCTSANKPSK-SGPKPERPSKSGPKPEKPSKSGPKPERPSKSGPKPERPSKSRPKPS 82
Query: 291 NP 296
P
Sbjct: 83 RP 84
>gi|7488996|pir||T07030 extensin - tomato (fragment) >gi|575950|emb|CAA86660.1|
(Z46675) extensin [Lycopersicon esculentum]
Length = 42
Frame 3 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | 42
0 20 40
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.2, P = 0.70
Identities = 17/36 (47%), Positives = 17/36 (47%), Frame = +3
Query: 192 PVPRRQQSKPPPPPXPAA-XPXPPRNLXTRSHP*NPY 299
P P K PPPP PA P PP L T P PY
Sbjct: 6 PPPPTPIYKSPPPPTPAYNSPPPPYYLYTSPPP--PY 40
>gi|7507260|pir||T33525 hypothetical protein T06A4.2 - Caenorhabditis elegans
>gi|3786501|gb|AAC67472.1| (AF098994) contains similarity to the
REL/dorsal family [Caenorhabditis elegans]
Length = 197
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.3, P = 0.73
Identities = 18/67 (26%), Positives = 33/67 (49%), Frame = +3
Query: 81 IIIIFRSP*RDQNPRTRTQQRSSKRTQPRSSK*SKC*PVPRRQQSKPPPPPXPAAXPXPP 260
I+ +S + + P+ +T++ + R++ SK S P+++ S PP P P + P P
Sbjct: 44 IVKYIKSKKQQKQPKKKTKKSTKSRSKSLKSKQSAV--TPKKRASPIPPQPAPPSSPKPT 101
Query: 261 RNLXTRS 281
T S
Sbjct: 102 EESATPS 108
>gi|6580645|emb|CAB63180.1| (AL133469) putative secreted proline-rich protein
[Streptomyces coelicolor A3(2)]
Length = 203
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.4, P = 0.75
Identities = 19/55 (34%), Positives = 22/55 (40%), Frame = +3
Query: 192 PVPRRQQSKPPPPPXPAAXPXPPRNLXTRSHP*NPYPTRSSXRIFLSXTSAEQTP 356
P P+ +P PPP PA P PPR S P PT R + TP
Sbjct: 96 PPPKPPAPEPEPPPPPAPRPAPPRPAPEPSPTPTPAPTPPPVRPAAPAPAPSVTP 150
WARNING: HSPs involving 94 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.82
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.334 0.142 0.468
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.306 0.120 0.332 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.513
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.168 0.635
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.145 0.450
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.344 0.146 0.519
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 126 118 10. 71 3 12 22 0.095 33
29 0.10 35
+2 0 127 122 10. 71 3 12 23 0.12 33
29 0.11 35
+1 0 127 121 10. 71 3 12 22 0.098 33
29 0.11 35
-1 0 127 119 10. 71 3 12 22 0.096 33
29 0.11 35
-2 0 127 118 10. 71 3 12 22 0.095 33
29 0.10 35
-3 0 126 120 10. 71 3 12 22 0.097 33
29 0.11 35
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 144
No. of states in DFA: 584 (58 KB)
Total size of DFA: 152 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 160.68u 1.32s 162.00t Elapsed: 00:00:28
Total cpu time: 160.73u 1.36s 162.09t Elapsed: 00:00:28
Start: Wed Jan 30 19:54:35 2002 End: Wed Jan 30 19:55:03 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000