Handout
NAR 2006 Paper
NAR 2002 Paper
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM44239
Query DataSets for GSM44239
Status
Public on Apr 04, 2005
Title
DLBCL-IB-4
Sample type
RNA
Source Name
Diffuse large B cell lymphoma
Organism(s)
Homo sapiens
Extracted molecule
total RNA
Description
Diffuse Large B cell lymphoma biopsy. The frozen tissue was homogeneized in Trizol reagent and RNA was purified following manufacturer instructions. Targets were produced starting from 5 ug of total RNA following standard Affymetrix protocol.
Submission date
Feb 28, 2005
Contact name
Katia Basso
E-mail(s)
kb451@columbia.edu
Phone
212-8515269
Fax
212-8515256
Organization name
Columbia University
Department
Institute for Cancer Genetics
Street address
1150 St. Nicholas Avenue
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL91
Series (1)
GSE2350
Normal and transformed human mature B cells
Data table header descriptions
ID_REF
Probeset ID of Affymatrix chip
VALUE
'signal' a meature of the abundance of a transcript (obtained using GCOS1.2)
ABS_CALL
the call in an absolute analysis that indicates if the transcript was presenct(P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
5
A
0.5
AFFX-MurIL10_at
19
A
0.52976
AFFX-MurIL4_at
0.9
A
0.997444
AFFX-MurFAS_at
24.3
A
0.262827
AFFX-BioB-5_at
179
P
0.001102
AFFX-BioB-M_at
211.2
P
0.000127
AFFX-BioB-3_at
200.1
P
0.001796
AFFX-BioC-5_at
691.8
P
0.000052
AFFX-BioC-3_at
675.2
P
0.000052
AFFX-BioDn-5_at
1306.8
P
0.000044
AFFX-BioDn-3_at
3762.5
P
0.000078
AFFX-CreX-5_at
5437.1
P
0.000066
AFFX-CreX-3_at
5064.5
P
0.000066
AFFX-BioB-5_st
24
A
0.368438
AFFX-BioB-M_st
9.8
A
0.824672
AFFX-BioB-3_st
10.7
A
0.868639
AFFX-BioC-5_st
3.2
A
0.941556
AFFX-BioC-3_st
4.2
A
0.544587
AFFX-BioDn-5_st
89.7
A
0.156732
AFFX-BioDn-3_st
77.2
P
0.01667
Total number of rows:
12600
Table truncated, full table size
310 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM44239.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Raw data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Section 508
|
