SNP linked to Gene <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=55909">BIN3</a>(geneID:55909) Via Contig Annotation

SNP linked to Gene BIN3(geneID:55909) Via Contig Annotation

Gene Model (mRNA alignment) information from genome sequence

Total gene model (contig mRNA transcript):				3
mrna	transcript	protein	mrna orientation	Contig	Contig Label	List SNP
NM_018688.4	minus strand	NP_061158.1	reverse	NT_023666.17	reference	<- currently shown
NM_018688.4	minus strand	NP_061158.1	reverse	NW_923907.1	Celera	View snp on GeneModel
NM_018688.4	minus strand	NP_061158.1	reverse	NW_001839127.1	HuRef	View snp on GeneModel

Include clinically associated

in gene region cSNP has frequency double hit

gene model (contig mRNA transcript):	Contig Label	Contig	mrna	protein	mrna orientation	transcript	snp count
gene model (contig mRNA transcript):	reference	NT_023666.17	NM_018688.4	NP_061158.1	reverse	minus strand	311, all

		Color Legend

Region	Contig position	mRNA pos	dbSNP rs# cluster id	Hetero- zygosity	3D	Function	dbSNP allele	Protein residue	Codon pos	Amino acid pos
3' near gene	850381		rs35049736	N.D.		3' near gene	-/G
	850586		rs6558169	0.205		3' near gene	A/G
	850702		rs17855313	N.D.		3' near gene	C/T
	851003		rs17855966	N.D.		3' near gene	C/G
	851059		rs7845453	N.D.		3' near gene	A/G
	851327		rs7825134	0.187		3' near gene	C/G
	851392		rs11277601	N.D.		3' near gene	-/GCAGTCC
	851398		rs11279546	N.D.		3' near gene	-/CGCAGTC
	851406		rs11277208	N.D.		3' near gene	-/GCAGTCC
	851445		rs56024925	N.D.		3' near gene	C/T
	851447		rs10551411	N.D.		3' near gene	-/CAT
	851449		rs10543261	N.D.		3' near gene	-/A/ATC
	851451		rs36011918	N.D.		3' near gene	-/CT
	851555		rs7846186	0.193		3' near gene	C/G
	851679		rs1059589	N.D.		3' near gene	G/T
	851886		rs59242668	N.D.		3' near gene	A/G
	851898		rs1869	0.441		3' near gene	A/G
	851986		rs1059590	N.D.		3' near gene	C/T
	852061		rs3087518	0.077		3' near gene	G/T
	852072		rs1064630	N.D.		3' near gene	A/C
	852091		rs1059592	0.459		3' near gene	C/T
	852113		rs1059594	N.D.		3' near gene	A/C
	852117		rs3208240	N.D.		3' near gene	C/T
	852120		rs1545837	0.335		3' near gene	A/G
	852169		rs1059599	N.D.		3' near gene	C/T

exon_9	852250	1857	rs35628429	N.D.		3' UTR	-/TTT
	852259	1848	rs60062081	N.D.		3' UTR	-/TTT
	852261	1846	rs33937830	N.D.		3' UTR	-/T
	852331	1776	rs13439542	0.208		3' UTR	C/T
	852379	1728	rs13439363	0.120		3' UTR	C/T
	852674	1433	rs13439369	N.D.		3' UTR	C/T
	852904	1203	rs7000993	N.D.		3' UTR	C/T
	852905	1202	rs7008429	0.224		3' UTR	A/G
	852998	1109	rs7001041	0.041		3' UTR	C/T

intron_8	853575		rs7835307	N.D.		intron	C/T
	853675		rs35439916	N.D.		intron	-/G
	853774		rs7846476	0.496		intron	C/T
	853781		rs7842260	N.D.		intron	A/G
	854247		rs56003328	N.D.		intron	A/G
	854301		rs11136093	N.D.		intron	C/G
	854316		rs10094324	N.D.		intron	C/T
	854494		rs3758045	0.298		intron	A/G
	854762		rs35822039	N.D.		intron	-/C
	854832		rs11780207	N.D.		intron	A/G
	855156		rs7830788	N.D.		intron	A/G
	855477		rs1871901	0.087		intron	C/G
	855571		rs56035330	N.D.		intron	A/G

exon_8	855762	691	rs1871900	0.499	Yes	synonymous	C	Phe [F]	3	198
						contig reference	T	Phe [F]	3	198
	855803	650	rs11550511	N.D.		missense	T	Cys [C]	1	185
						contig reference	C	Arg [R]	1	185

intron_6	856205		rs57676844	N.D.		intron	-/G
	856631		rs10108121	N.D.		intron	A/G
	856689		rs10091493	N.D.		intron	C/G
	856789		rs1075480	0.276		intron	C/T
	856866		rs10102801	N.D.		intron	C/T
	856879		rs10102804	N.D.		intron	C/G
	856925		rs35789919	N.D.		intron	-/CCTACTACC
	856926		rs58771275	N.D.		intron	-/TACTACCCC
	857041		rs876713	0.212		intron	G/T
	857112		rs876714	N.D.		intron	A/G
	857164		rs900268	N.D.		intron	G/T
	857424		rs2404653	0.172		intron	A/T
	857559		rs13271506	N.D.		intron	A/G
	857975		rs878052	0.500		intron	A/G
	858128		rs57427944	N.D.		intron	C/T
	858149		rs878051	0.476		intron	A/G
	858162		rs878053	N.D.		intron	A/G
	858461		rs3834374	N.D.		intron	-/TC
	858464		rs35287693	N.D.		intron	-/AG
	858569		rs58939356	N.D.		intron	C/G
	858581		rs10099266	0.436		intron	C/G
	858609		rs10110443	N.D.		intron	C/G
	858799		rs3779731	N.D.		intron	C/T
	858823		rs3779730	N.D.		intron	C/G
	859018		rs5890059	N.D.		intron	-/G
	859176		rs10546876	N.D.		intron	-/CACT
	859262		rs2404654	N.D.		intron	C/T
	859299		rs62492658	N.D.		intron	C/T
	859417		rs35154507	N.D.		intron	-/G
	859478		rs5890060	N.D.		intron	-/C
	859479		rs33914719	N.D.		intron	-/C
	859482		rs5890061	N.D.		intron	-/C
	859571		rs900267	0.459		intron	A/G
	859608		rs900266	N.D.		intron	A/T
	859688		rs7830206	0.402		intron	C/T
	860247		rs10113779	0.430		intron	C/G
	860676		rs34056737	N.D.		intron	-/A
	860716		rs7843758	0.230		intron	C/T
	860740		rs7830262	N.D.		intron	A/G
	860925		rs11785031	0.459		intron	A/G
	861264		rs3758042	0.459		intron	A/G
	861300		rs3758041	0.456		intron	C/T
	861400		rs3758040	0.458		intron	A/G
	861445		rs13258344	N.D.		intron	G/T
	861479		rs13273602	N.D.		intron	C/T
	861496		rs13264829	N.D.		intron	A/G
	861689		rs58587747	N.D.		intron	C/G
	861701		rs6558170	0.454		intron	C/G
	861735		rs6558171	0.464		intron	C/T

intron_4	862543		rs34841678	N.D.		intron	-/A
	863014		rs2128293	N.D.		intron	A/G
	863063		rs13269603	0.268		intron	C/T
	863252		rs1564595	0.469		intron	C/T
	863560		rs1038311	0.464		intron	A/G
	863583		rs1564594	0.075		intron	A/G
	863820		rs61692540	N.D.		intron	A/G
	863850		rs4872524	0.458		intron	C/T
	863979		rs60737484	N.D.		intron	A/G
	863991		rs7831119	0.456		intron	A/G
	864129		rs59571883	N.D.		intron	A/G
	864522		rs2404655	N.D.		intron	C/T
	864547		rs3060652	N.D.		intron	-/TT
	864548		rs35432489	N.D.		intron	-/TTT
	864550		rs56096466	N.D.		intron	A/G
	864922		rs4345551	N.D.		intron	C/T
	865113		rs4072394	N.D.		intron	C/T
	865593		rs5890062	N.D.		intron	-/T
	865599		rs5890063	N.D.		intron	-/GG
	865602		rs5890064	N.D.		intron	-/GG
	865710		rs1809452	0.269		intron	A/G
	865809		rs2009212	0.464		intron	C/T
	865831		rs2003908	0.438		intron	A/G
	865840		rs2003907	N.D.		intron	A/G
	865935		rs35952885	N.D.		intron	G/T
	866102		rs35109272	N.D.		intron	C/T
	866193		rs17088488	0.490		intron	A/G
	866293		rs17746902	0.477		intron	G/T
	866353		rs61457301	N.D.		intron	A/G
	866365		rs6558172	0.463		intron	A/G
	866392		rs11383600	N.D.		intron	-/A
	866393		rs34958408	N.D.		intron	-/A
	866404		rs57180459	N.D.		intron	G/T
	866416		rs6558173	0.438		intron	G/T
	866442		rs6558174	0.453		intron	A/G
	866456		rs7838146	0.488		intron	C/T
	866613		rs61224284	N.D.		intron	C/T
	866817		rs35591910	N.D.		intron	C/T
	867021		rs4872525	0.475		intron	A/C
	867424		rs58352223	N.D.		intron	C/T
	867437		rs11776549	0.343		intron	C/T
	867480		rs55825642	N.D.		intron	C/T
	867663		rs12676084	0.417		intron	C/T
	867712		rs17088501	0.098		intron	C/T
	868074		rs17088502	0.103		intron	A/G
	868205		rs3832562	N.D.		intron	-/AC
	868234		rs13263460	N.D.		intron	A/G
	868240		rs13272264	0.416		intron	C/T
	868249		rs13272269	N.D.		intron	A/T
	868257		rs13249628	N.D.		intron	C/G
	868258		rs13263485	N.D.		intron	A/G
	868291		rs3735899	0.072		intron	C/G

intron_3	868722		rs754787	N.D.		intron	A/G

intron_2	868926		rs17088504	0.041		intron	C/G
	869177		rs3837165	N.D.		intron	-/C
	869343		rs3779729	0.079		intron	C/T
	869440		rs3779728	0.074		intron	C/G
	869633		rs1014777	0.100		intron	G/T
	869637		rs59466839	N.D.		intron	C/T
	869649		rs17088510	0.070		intron	C/T
	869708		rs17088511	0.021		intron	A/G
	869799		rs5890065	N.D.		intron	-/A
	869822		rs1986182	0.068		intron	A/G
	869897		rs10605490	N.D.		intron	-/AG
	869898		rs34149197	N.D.		intron	-/G
	869899		rs35492541	N.D.		intron	-/A
	870279		rs4872526	0.471		intron	C/T
	870361		rs4872527	0.388		intron	A/G
	871044		rs12334545	0.078		intron	C/T
	871102		rs13268980	N.D.		intron	G/T
	871687		rs11388602	N.D.		intron	-/T
	871699		rs57895666	N.D.		intron	-/T
	871994		rs6993093	N.D.		intron	A/G
	872134		rs6558175	N.D.		intron	C/T
	872196		rs35170682	N.D.		intron	-/T
	872274		rs35973605	N.D.		intron	-/C
	872644		rs58788548	N.D.		intron	-/G
	872741		rs4872528	0.014		intron	A/G
	872783		rs3735898	N.D.		intron	A/C
	873324		rs35477079	0.032		intron	A/G
	873381		rs3779727	0.139		intron	A/G
	873467		rs3779726	0.064		intron	A/G
	873481		rs3779725	N.D.		intron	C/G
	873484		rs35347771	0.055		intron	G/T
	873714		rs17088513	0.066		intron	A/C
	873757		rs34633840	N.D.		intron	-/C
	873777		rs3735897	0.056		intron	A/C
	873963		rs7812678	N.D.		intron	C/G
	874060		rs10429308	0.033		intron	A/G
	874483		rs2170510	0.065		intron	C/T
	874524		rs1982708	0.010		intron	C/G
	874821		rs2170511	N.D.		intron	C/G
	874943		rs61044485	N.D.		intron	A/T
	874955		rs17088515	0.052		intron	A/T
	875159		rs34560197	N.D.		intron	-/C
	875172		rs35513451	N.D.		intron	-/T
	875242		rs7341676	0.281		intron	A/G
	875556		rs2404656	0.064		intron	A/G
	875578		rs6998477	N.D.		intron	A/G
	875646		rs749368	N.D.		intron	A/T
	875770		rs749367	0.065		intron	A/G
	875898		rs10429337	N.D.		intron	C/G
	875899		rs900265	N.D.		intron	A/G
	875906		rs62494260	N.D.		intron	C/T
	876041		rs749366	0.088		intron	A/T
	876143		rs4242434	0.342		intron	G/T
	876505		rs58174627	N.D.		intron	C/T
	876522		rs34656094	N.D.		intron	-/T

intron_1	876964		rs61350201	N.D.		intron	C/T
	877008		rs61368703	N.D.		intron	-/A
	877817		rs9802033	0.447		intron	G/T
	877935		rs35083320	N.D.		intron	-/A
	878750		rs58022632	N.D.		intron	C/T
	879406		rs7459660	0.447		intron	A/G
	879813		rs62494261	N.D.		intron	A/T
	879980		rs55869105	N.D.		intron	-/A
	880273		rs56715924	N.D.		intron	-/AAG
	880411		rs13264187	0.312		intron	C/T
	880521		rs58750709	N.D.		intron	A/G
	880721		rs7388243	0.473		intron	A/G
	880729		rs34525787	N.D.		intron	-/GTAT
	880731		rs35388502	N.D.		intron	-/ATGT
	880767		rs56065322	N.D.		intron	-/TGTA
	880768		rs34981796	N.D.		intron	-/TGTA
	880768		rs62494262	N.D.		intron	A/T
	880771		rs62494263	N.D.		intron	A/G
	880839		rs57927282	N.D.		intron	C/T
	881024		rs60449376	N.D.		intron	C/T
	881198		rs10578585	N.D.		intron	-/AAAGT
	881204		rs10576952	N.D.		intron	-/AAGTA
	881209		rs35597946	0.493		intron	-/AAGTA
	881676		rs35002969	N.D.		intron	C/T
	881677		rs60254873	N.D.		intron	-/TA
	881683		rs56674098	N.D.		intron	-/AC
	881683		rs58976304	N.D.		intron	-/ACCC
	881685		rs10217028	N.D.		intron	A/C
	881732		rs57371298	N.D.		intron	-/AT
	881797		rs59607596	N.D.		intron	-/CAT
	881843		rs58433789	N.D.		intron	A/G
	881855		rs10216729	0.168		intron	A/G
	881933		rs61641183	N.D.		intron	C/T
	881945		rs10217040	0.150		intron	C/T
	882000		rs56141704	N.D.		intron	C/T
	882527		rs7816531	0.051		intron	A/G
	882670		rs57864391	N.D.		intron	C/G
	882732		rs13257247	N.D.		intron	A/G
	883020		rs34552167	N.D.		intron	-/C
	883273		rs7012549	0.019		intron	A/G
	883791		rs10216447	0.232		intron	C/T
	883827		rs35335976	N.D.		intron	-/T
	884355		rs62494264	N.D.		intron	C/G
	884590		rs62494265	N.D.		intron	C/G
	884730		rs56979717	N.D.		intron	C/T
	884769		rs13257235	N.D.		intron	G/T
	884772		rs13257246	N.D.		intron	G/T
	884832		rs7840303	0.243		intron	C/T
	885291		rs57721542	N.D.		intron	A/T
	885331		rs7844417	0.014		intron	C/T
	885364		rs35661854	N.D.		intron	-/A
	885650		rs28696301	N.D.		intron	G/T
	886381		rs7826059	0.469		intron	C/T
	886593		rs59122143	N.D.		intron	-/G
	886679		rs61487751	N.D.		intron	C/G
	886720		rs59736882	N.D.		intron	A/G
	887076		rs57237427	N.D.		intron	A/T
	887131		rs58623241	N.D.		intron	-/T
	887253		rs60950717	N.D.		intron	C/T
	887647		rs60245180	N.D.		intron	A/T
	887659		rs4872529	0.444		intron	A/T
	888919		rs11784129	N.D.		intron	A/G
	889107		rs34058558	N.D.		intron	-/G
	889932		rs55968065	N.D.		intron	A/C
	891026		rs34279803	N.D.		intron	-/G
	891166		rs4451313	N.D.		intron	C/G
	891981		rs35293458	N.D.		intron	-/C
	892513		rs59027715	N.D.		intron	A/T
	893619		rs12675062	N.D.		intron	C/T
	893773		rs55663009	N.D.		intron	-/CCA
	893962		rs34948847	N.D.		intron	-/C
	894116		rs61124591	N.D.		intron	A/C
	894128		rs7005025	0.454		intron	A/C
	894995		rs4615566	N.D.		intron	A/G
	895034		rs34437288	N.D.		intron	-/GT
	895035		rs3220194	0.640		intron	(CA)10/11/12/13
	895056		rs35574110	N.D.		intron	-/TG
	895288		rs35060338	N.D.		intron	-/A
	895810		rs57473537	N.D.		intron	C/G
	896072		rs34858282	N.D.		intron	-/A
	896403		rs10098338	N.D.		intron	A/G
	896406		rs58571230	N.D.		intron	C/T
	896442		rs4424255	0.463		intron	C/T
	896460		rs62494266	N.D.		intron	A/G
	896682		rs55653131	N.D.		intron	C/T
	896815		rs6558176	0.451		intron	C/T
	897169		rs12544502	N.D.		intron	C/T
	897930		rs34474047	N.D.		intron	-/G
	898064		rs12544561	N.D.		intron	A/C
	898195		rs13256454	N.D.		intron	C/G
	898197		rs13256455	N.D.		intron	G/T
	898204		rs13256650	N.D.		intron	C/G
	898254		rs59560179	N.D.		intron	A/G
	898454		rs12541601	N.D.		intron	A/G
	899122		rs59546892	N.D.		intron	-/CTA
	899467		rs58508531	N.D.		intron	C/T
	899479		rs2280105	0.065		intron	C/T
	899609		rs1877671	N.D.		intron	C/T
	899848		rs34016774	N.D.		intron	-/A
	899922		rs10086255	0.119		intron	C/T
	900281		rs57291891	N.D.		intron	A/G
	900293		rs2280104	0.345		intron	A/G
	900295		rs2280103	N.D.		intron	A/G

exon_1	900872	103	rs17088526	N.D.		synonymous	T	Ser [S]	3	2
						contig reference	C	Ser [S]	3	2
	900972	3	rs28366067	N.D.		5' UTR	-/T
exon_1	900877	98				start codon				1

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Revised: May 25, 2006 1:38 PM .