27
proteins |
T |
COG1716 |
FHA-domain-containing proteins |
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26 hits to 9 species
283 letters
1458 = slr1102_1 (283) =
424 = slr1103_1 (240) =
271 = slr1104_1 (140) =
221 = sll1895_1 (230) =
185 = slr1951 (157) =
100 _ slr1710 (749) COG0744
82 = sll0778_1 (225) =
79 _ ZftsA (420) COG0849
79 _ ftsA (420) COG0849
79 = Rv1747_1 (325) =
74 = ML0022_2 (91) =
74 BH3881 (398)
74 = Rv0020c_2 (92) =
71 _ DR2417m (579) COG0595
70 _ YFL053w (591) COG2376
70 YDR170c (2009)
67 = slr1991_1 (126) =
66 _ Rv2291 (284) COG2897
66 _ APE0621 (257) COG1646
65 _ Rv2163c (679) COG0768
65 _ YDL101c (513) COG0515
65 = CT664_2 (469) =
64 BH3497 (628)
64 = Rv1827 (162) =
64 _ DR1227_1 (229) COG2202
63 VNG2165H (251)
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= slr1102_1
(283 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
slr1102_1 566 e-161
slr1103_1 167 1e-41
slr1104_1 108 6e-24
sll1895_1 90 4e-18
slr1951 76 6e-14
slr1710 43 4e-04
sll0778_1 36 0.050
ZftsA 35 0.11
ftsA 35 0.11
Rv1747_1 35 0.11
ML0022_2 33 0.42
BH3881 33 0.42
Rv0020c_2 33 0.42
DR2417m 32 0.94
YFL053w 32 1.2
YDR170c 32 1.2
slr1991_1 30 2.7
Rv2291 30 3.6
APE0621 30 3.6
Rv2163c 30 4.6
YDL101c 30 4.6
CT664_2 30 4.6
BH3497 29 6.1
Rv1827 29 6.1
DR1227_1 29 6.1
VNG2165H 29 7.9
# >slr1102_1
# Length = 283
#
# Score = 566 bits (1458), Expect = e-161
# Identities = 283/283 (100%), Positives = 283/283 (100%)
#
# Query: 1 MPSMSNDSIVRHVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVN 60
# MPSMSNDSIVRHVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVN
# Sbjct: 1 MPSMSNDSIVRHVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVN 60
#
# Query: 61 DYQNHQYTYRLIDGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNLTT 120
# DYQNHQYTYRLIDGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNLTT
# Sbjct: 61 DYQNHQYTYRLIDGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNLTT 120
#
# Query: 121 ESEEQPYGAEPVSVVANPIMGETYVDPLNFAMADHGYGEGAGFDHEAVEVEEDSSFSTAV 180
# ESEEQPYGAEPVSVVANPIMGETYVDPLNFAMADHGYGEGAGFDHEAVEVEEDSSFSTAV
# Sbjct: 121 ESEEQPYGAEPVSVVANPIMGETYVDPLNFAMADHGYGEGAGFDHEAVEVEEDSSFSTAV 180
#
# Query: 181 VYNDEIPDVSRSAPLPSHRPPASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQA 240
# VYNDEIPDVSRSAPLPSHRPPASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQA
# Sbjct: 181 VYNDEIPDVSRSAPLPSHRPPASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQA 240
#
# Query: 241 QHPLIQGLSNLSLTREGLQLERDIAIGQQIFHQRIFLGPDRSR 283
# QHPLIQGLSNLSLTREGLQLERDIAIGQQIFHQRIFLGPDRSR
# Sbjct: 241 QHPLIQGLSNLSLTREGLQLERDIAIGQQIFHQRIFLGPDRSR 283
#
#
# >slr1103_1
# Length = 240
#
# Score = 167 bits (424), Expect = 1e-41
# Identities = 99/270 (36%), Positives = 153/270 (56%), Gaps = 33/270 (12%)
#
# Query: 4 MSNDSIVRHVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDY- 62
# M+N RH+ VIEDQK+RRI+SL+E TY IGR+ S+ I IYD+ VSRHHATLIR+
# Sbjct: 1 MTNLPEFRHIFVIEDQKARRIISLDEPTYSIGRESSNDIVIYDQVVSRHHATLIRIKPTS 60
#
# Query: 63 QNHQYTYRLIDGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNLTTES 122
# QN Y+YR++DG+L+G RSTNG+++NGQ SH+L+HGDVI FG+QSKASY+I++ + E
# Sbjct: 61 QNEGYSYRILDGDLEGNRSTNGLIINGQDSESHDLQHGDVILFGSQSKASYYIVSTSLE- 119
#
# Query: 123 EEQPYGAEPVSVVANPIMGETYVDPLNFAMADHGYGEGAGFDHEAVEVEEDSSFSTAVVY 182
# + NP+ + D ++ ++ S + +
# Sbjct: 120 ----------IAMFNPLEAMSLEDLSRQSLGEY--------------------TSKSTII 149
#
# Query: 183 NDEIPDVSRSAPLPSHRPP-ASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQAQ 241
# N++ + SR AP + +S +E S IVE+ G+++Y N F ++ +
# Sbjct: 150 NEQEQEASRLAPSSADLVRFSSFAELSPHPIVEIDFNGKIVYLNPPASIKFRDINDLGVS 209
#
# Query: 242 HPLIQGLSNLSLTREGLQLERDIAIGQQIF 271
# HP+++GL N + G L R++ G + +
# Sbjct: 210 HPILEGLLNQAQNVRGNLLLREVKSGDECY 239
#
#
# >slr1104_1
# Length = 140
#
# Score = 108 bits (271), Expect = 6e-24
# Identities = 54/117 (46%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
#
# Query: 11 RHVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYR 70
# +H+LV+ED RR + L+E Y IGR ++I I+ RQ SRHHATL+R + + ++ +
# Sbjct: 3 QHILVLEDANQRRTIILDEQQYSIGRHSGTSIQIHSRQASRHHATLMRKTNSKTNEECFW 62
#
# Query: 71 LIDGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNL-TTESEEQP 126
# +IDG+L+G +S NGV VNG+ L HEL++GD+I FG ASYH+ ES QP
# Sbjct: 63 IIDGDLEGNKSQNGVFVNGEKRLIHELKNGDLINFGCSINASYHVTGEGFGESSSQP 119
#
#
# >sll1895_1
# Length = 230
#
# Score = 89.7 bits (221), Expect = 4e-18
# Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 34/235 (14%)
#
# Query: 14 LVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLID 73
# LV++ ++++ L+ + Y IGR PS+ I I Q+SR HATLI+ + N ++ +ID
# Sbjct: 5 LVVDSPSFKKVIRLQNSCYSIGRHPSNTIVIPSPQISRRHATLIKKIN-PNLDISFHIID 63
#
# Query: 74 GNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNLTTESEEQPYGAEPVS 133
# G+L+G RS NGV VNG+ L +EL HGDVI + Y Q +P
# Sbjct: 64 GDLEGHRSRNGVWVNGESHLDYELVHGDVIALSEDIQIFY-----------QAIPTDP-- 110
#
# Query: 134 VVANPIMGETYVDPLNFAMADHGYGEGAGFDHEAVEVEEDSSFSTAVVYNDEIPDVSRSA 193
# + I G L +++H F E ++ T + + D++ +S
# Sbjct: 111 --KDTISGGGDRQRLTPDLSEH-------FPQEQWDI-------TLIGHEDDLSQLSHE- 153
#
# Query: 194 PLPSHRPPASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQAQHPLIQGL 248
# A+ E S +VE+ G + Y N ATK FP + HPL++ +
# Sbjct: 154 ---KLSKLAACIEYSPYPMVEIDYFGNLTYLNTATKEKFPSIQKDSMAHPLLKDI 205
#
#
# >slr1951
# Length = 157
#
# Score = 75.9 bits (185), Expect = 6e-14
# Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
#
# Query: 1 MPSMSNDSIVRHVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVN 60
# M S + H+L+I D RR V L E Y IGR P + I I + VSR HA L+R +
# Sbjct: 1 MSDPSAKPLQEHILIILDDAGRREVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKS 60
#
# Query: 61 DYQNHQYTYRLIDGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASY 113
# + Q YR+IDG+ G+ S NG+++NG+ H ++ GD I G Q Y
# Sbjct: 61 S-DDVQAAYRIIDGDEDGQSSVNGLMINGKKVQEHIIQTGDEIVMGPQVSVRY 112
#
#
# >slr1710
# Length = 749
#
# Score = 43.1 bits (100), Expect = 4e-04
# Identities = 26/90 (28%), Positives = 47/90 (51%), Gaps = 8/90 (8%)
#
# Query: 17 EDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGNL 76
# ++ +SRR+ L + Y +GR S I + + VS+ H +L R D+ N + +
# Sbjct: 46 KNSQSRRVFPLLGDRYFLGRSSSCDIQLQNPLVSQTHCSLRRDPDHPNQFF--------I 97
#
# Query: 77 QGKRSTNGVVVNGQYCLSHELEHGDVIRFG 106
# + + S+NG+ + + S+ L+HGD I G
# Sbjct: 98 RDEGSSNGIYLQRRRLKSYRLQHGDEITLG 127
#
#
# >sll0778_1
# Length = 225
#
# Score = 36.2 bits (82), Expect = 0.050
# Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 15/67 (22%)
#
# Query: 25 VSLEENTYDIGRDPSSAIPIYDRQVSRHHATL--IRVNDYQNHQYTYRLIDGNLQGKRST 82
# ++L++ + IGRD ++ + + VSR HA L + N Y H Y ST
# Sbjct: 131 INLKQKSVVIGRDETANLQLLSSAVSRQHAVLDYLEPNTYLLHDY-------------ST 177
#
# Query: 83 NGVVVNG 89
# NGV VNG
# Sbjct: 178 NGVYVNG 184
#
#
# >ZftsA
# Length = 420
#
# Score = 35.0 bits (79), Expect = 0.11
# Identities = 39/154 (25%), Positives = 62/154 (39%), Gaps = 11/154 (7%)
#
# Query: 128 GAEPVSVVANPIMGETYVDPL--NFAMADHGYGEGAG-FDHEAVEVEEDSSFSTAVVYND 184
# G ++V + T V P N +D Y G D EA++V + + +V D
# Sbjct: 214 GTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGS-IVGKD 272
#
# Query: 185 EIPDVSRSAPLPSHRPPASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQAQHPL 244
# E +V P RPP SL + ++E + N L +L +H L
# Sbjct: 273 ESVEV----PSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHL 328
#
# Query: 245 IQGLSNLSLTREGLQLERDIAIGQQIFHQRIFLG 278
# G+ LT Q+E A Q++FH ++ +G
# Sbjct: 329 AAGIV---LTGGAAQIEGLAACAQRVFHTQVRIG 359
#
#
# >ftsA
# Length = 420
#
# Score = 35.0 bits (79), Expect = 0.11
# Identities = 39/154 (25%), Positives = 62/154 (39%), Gaps = 11/154 (7%)
#
# Query: 128 GAEPVSVVANPIMGETYVDPL--NFAMADHGYGEGAG-FDHEAVEVEEDSSFSTAVVYND 184
# G ++V + T V P N +D Y G D EA++V + + +V D
# Sbjct: 214 GTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGS-IVGKD 272
#
# Query: 185 EIPDVSRSAPLPSHRPPASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQAQHPL 244
# E +V P RPP SL + ++E + N L +L +H L
# Sbjct: 273 ESVEV----PSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHL 328
#
# Query: 245 IQGLSNLSLTREGLQLERDIAIGQQIFHQRIFLG 278
# G+ LT Q+E A Q++FH ++ +G
# Sbjct: 329 AAGIV---LTGGAAQIEGLAACAQRVFHTQVRIG 359
#
#
# >Rv1747_1
# Length = 325
#
# Score = 35.0 bits (79), Expect = 0.11
# Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 11/74 (14%)
#
# Query: 34 IGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGNLQGKRSTNGVVVNGQYCL 93
# IGR + I I + SRHHATL+ ++ RS NG VNG
# Sbjct: 232 IGRANDNDIVIPEVLASRHHATLVPTPG-----------GTEIRDNRSINGTFVNGARVD 280
#
# Query: 94 SHELEHGDVIRFGN 107
# + L GDV+ GN
# Sbjct: 281 AALLHDGDVVTIGN 294
#
#
# >ML0022_2
# Length = 91
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
#
# Query: 18 DQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGN-- 75
# D S R L E + +GR + + D VSR H + DG
# Sbjct: 5 DDGSGRTYQLREGSNIVGRGQDAQFRLPDTGVSRRHLEI--------------RWDGQVA 50
#
# Query: 76 -LQGKRSTNGVVVNGQYCLSHELEHGDVIRFGN 107
# L STNG VN +L GDVIR G+
# Sbjct: 51 LLSDLNSTNGTTVNNAPVQEWQLADGDVIRLGH 83
#
#
# >BH3881
# Length = 398
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 13/76 (17%)
#
# Query: 71 LIDGNLQGKRSTNGVVVNGQYCLSHELE-------------HGDVIRFGNQSKASYHIMN 117
# + +G LQG ++ ++VNGQ L+ +L+ +G V + NQ A Y
# Sbjct: 152 MTNGYLQGLQTNTHLIVNGQLTLAADLDLDLFHEKIWAIEVNGKVKVYSNQQAAFYQKGQ 211
#
# Query: 118 LTTESEEQPYGAEPVS 133
# +T + P G EP+S
# Sbjct: 212 VTGVATVIPEGFEPIS 227
#
#
# >Rv0020c_2
# Length = 92
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
#
# Query: 18 DQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGN-- 75
# D S R L E + IGR + + D VSR H + DG
# Sbjct: 6 DDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEI--------------RWDGQVA 51
#
# Query: 76 -LQGKRSTNGVVVNGQYCLSHELEHGDVIRFGN 107
# L STNG VN +L GDVIR G+
# Sbjct: 52 LLADLNSTNGTTVNNAPVQEWQLADGDVIRLGH 84
#
#
# >DR2417m
# Length = 579
#
# Score = 32.0 bits (71), Expect = 0.94
# Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
#
# Query: 96 ELEHGDVIRFGNQSKASYHIMNLTTESEEQPYGAEPVSVVANPIMGETYVDPLNFAMADH 155
# E+ +GD +RFG A + M + PV V + G+ +DP
# Sbjct: 131 EVTYGDEVRFGQSFVAEFFCMTHSIPDNAGYILKTPVGDVLH--TGDFKIDP-------- 180
#
# Query: 156 GYGEGAGFDHEAVEVEEDSSFSTAVVYNDEIPDVSRSAPLPSHRP-PASLSENSTQLI-- 212
# G GAG + VE+ ++ +D S +A P H P A ++ N ++I
# Sbjct: 181 DVGTGAGIVSDLERVEQAGKDGVLLLISD-----STNAERPGHTPSEAEIARNLEEIIKG 235
#
# Query: 213 ----VELTTAGQVIY 223
# V LTT +Y
# Sbjct: 236 CRGRVFLTTFASQVY 250
#
#
# >YFL053w
# Length = 591
#
# Score = 31.6 bits (70), Expect = 1.2
# Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
#
# Query: 100 GDVIRFG---NQSKASYHIMNLTTESEEQPYGAEPVSVVANPIMGETY-VDPLNFAMADH 155
# GD+I FG ++KA+ + L ++ G + S+V +G T V + A A H
# Sbjct: 113 GDIIHFGLAAERAKAAGMKVELVAVGDDVSVGKKKGSLVGRRGLGATVLVHKIAGAAASH 172
#
# Query: 156 GYGEGAGFDHEAVEVEEDSSFSTAVVYNDEIPDVSRS-APLPSHRPPASLSENSTQL 211
# G +E+ E + + +VV N S +P H+P A L EN ++
# Sbjct: 173 G-----------LELAEVAEVAQSVVDNSVTIAASLDHCTVPGHKPEAILGENEYEI 218
#
#
# >YDR170c
# Length = 2009
#
# Score = 31.6 bits (70), Expect = 1.2
# Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
#
# Query: 164 DHEAVEVEEDSSFSTAVVYNDEIPDVSRSAPLPSHRPPASLSE-----NSTQLIVELT 216
# + E E EE+++ A+ + D +P +AP +H SLS NST ++V+ T
# Sbjct: 173 EEEEEEEEEENAGEPAIAHQDSVPTNDSTAPRSTHTRNISLSSNGSNTNSTIILVKTT 230
#
#
# >slr1991_1
# Length = 126
#
# Score = 30.4 bits (67), Expect = 2.7
# Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 22/119 (18%)
#
# Query: 32 YDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGNLQGKRSTNGVVVNG-Q 90
# + +GR + + I D +SR+HA L + T+ LID S NG VNG +
# Sbjct: 29 WTVGRSQDNDLVIRDNCISRNHAIL-----QATEEDTFLLID-----LGSRNGTFVNGRR 78
#
# Query: 91 YCLSHELEHGDVIRFGNQSKASYHIMNLTTESEEQPYGAEPVSVVANPIMGETYVDPLN 149
# + ++ D I FG Y N T P ++ NP +T + L+
# Sbjct: 79 VSVPIAIQDQDKITFGKTEAQFYSDQNGT-----------PSGLLRNPAEWDTQTNVLH 126
#
#
# >Rv2291
# Length = 284
#
# Score = 30.0 bits (66), Expect = 3.6
# Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
#
# Query: 70 RLIDGNLQGKRSTNGVVVNGQY--------CLSHELEHGDVIRFGNQSKASYHIMNLTTE 121
# R++DG L RS G + GQ L +L G + Q + + L
# Sbjct: 120 RILDGGLPAWRSAGGSIETGQVSPQLGNVTVLHDDLYAGQRLTLTAQQAGAGGVTLLDAR 179
#
# Query: 122 SEEQPYG-AEPVSVVANPIMGETYVDPLNFAMADHG--YGEGA--------GFDHEA-VE 169
# E+ G EPV VA I G V P +AD G G GA G DH V
# Sbjct: 180 VPERFRGDVEPVDAVAGHIPGAINV-PSGSVLADDGTFLGNGALNALLSDHGIDHGGRVG 238
#
# Query: 170 VEEDSSFSTAVV 181
# V S S AV+
# Sbjct: 239 VYCGSGVSAAVI 250
#
#
# >APE0621
# Length = 257
#
# Score = 30.0 bits (66), Expect = 3.6
# Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
#
# Query: 106 GNQSKASYH---IMNLTTESEEQPYGAEPVSVVANPIMGETYVDPLNFAMADHGYGEGAG 162
# G + AS H ++ LT + + PY ++ P+ + ++ + + GYG AG
# Sbjct: 86 GGHTNASRHADAVLFLTVMNSDNPYYIVQAQILGAPLALKLGLEAIPTSYIIVGYGGAAG 145
#
# Query: 163 FDHEAVEVEEDSSFSTAVVYNDEIPDVSRSAPLPSHRPPASLSENSTQLIVELTTAGQVI 222
# F V+R+ P+P +P + + + G++I
# Sbjct: 146 F-------------------------VARARPIPYEKPELA----ALHALAGAMMGGRII 176
#
# Query: 223 Y---ANGATKALFPELMA 237
# Y +GA K + PE +A
# Sbjct: 177 YLEAGSGAPKPVPPEAVA 194
#
#
# >Rv2163c
# Length = 679
#
# Score = 29.6 bits (65), Expect = 4.6
# Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
#
# Query: 73 DGNLQGKRSTNGVVVNGQYCLSHELEHGDVIRFGNQSKASYHIMNLTTESEEQPYGAEPV 132
# DG++ R ++GVV+ G Y H+ HG + + +++ +++ GA V
# Sbjct: 280 DGSVTYDRGSDGVVIPGSYRNRHKAVHGSTVVLTLDNDIQFYVQQQVQQAKNLS-GAHNV 338
#
# Query: 133 SVV 135
# S V
# Sbjct: 339 SAV 341
#
#
# >YDL101c
# Length = 513
#
# Score = 29.6 bits (65), Expect = 4.6
# Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
#
# Query: 12 HVLVIEDQKSRRIVSLEENTYDIGRDPSSAIPIYDRQVSRHHAT--LIRVNDYQNHQYTY 69
# H++ + K +++ N IGR S + + + +S HA L++++ +
# Sbjct: 36 HLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLI 95
#
# Query: 70 RLIDGNLQGKRSTNGVVVNGQYCLSHE--LEHGDVIRFG 106
# +ID +S NG +NG + + L++GD I FG
# Sbjct: 96 NVID------KSRNGTFINGNRLVKKDYILKNGDRIVFG 128
#
#
# >CT664_2
# Length = 469
#
# Score = 29.6 bits (65), Expect = 4.6
# Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
#
# Query: 31 TYDIGRDPSSA-IPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGNLQGKRSTNGVVVNG 89
# TY +G DP A I + D +SR HA +I ND ++ S NGV+V G
# Sbjct: 45 TYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN----------SVLIEDLGSKNGVIVEG 94
#
# Query: 90 Q 90
# +
# Sbjct: 95 R 95
#
#
# >BH3497
# Length = 628
#
# Score = 29.3 bits (64), Expect = 6.1
# Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
#
# Query: 95 HELEHGDVIRFGNQSKASYHIMNLTTESEEQPYGA-----EPVSVVANPIMGETYVDPLN 149
# HEL D R NQ+ S+H + TE EE + EPV V + ++ T V+ +
# Sbjct: 432 HELMINDKYRVRNQNSLSFH---MNTEGEETQFKVAFQPMEPVDVTSVELIDPTVVENVE 488
#
# Query: 150 F 150
# +
# Sbjct: 489 Y 489
#
#
# >Rv1827
# Length = 162
#
# Score = 29.3 bits (64), Expect = 6.1
# Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
#
# Query: 27 LEENTYDIGRDPSSAIPIYDRQVSRHHATLIRVNDYQNHQYTYRLIDGNLQGKRSTNGVV 86
# L++ GR P S I + D VSR HA +N+++ N+ S NG
# Sbjct: 72 LDQAITSAGRHPDSDIFLDDVTVSRRHAEF----RLENNEF-------NVVDVGSLNGTY 120
#
# Query: 87 VNGQYCLSHELEHGDVIRFG 106
# VN + S L +GD ++ G
# Sbjct: 121 VNREPVDSAVLANGDEVQIG 140
#
#
# >DR1227_1
# Length = 229
#
# Score = 29.3 bits (64), Expect = 6.1
# Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 2/63 (3%)
#
# Query: 204 LSENSTQLIVELTTAGQVIYANGATKALFPELMAIQAQHPLIQGLSNLSLTREGLQLERD 263
# L+E + LI+ AG V YAN A L L PL+ TRE L L D
# Sbjct: 131 LAEGAHDLILSADAAGNVTYANPAACRLLEPLTGPLTGAPLL--ALPTPATREALHLAWD 188
#
# Query: 264 IAI 266
# +A+
# Sbjct: 189 MAL 191
#
#
# >VNG2165H
# Length = 251
#
# Score = 28.9 bits (63), Expect = 7.9
# Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 8/67 (11%)
#
# Query: 98 EHGDVIRFGNQSKASYHIMNLTTESEEQPYGAEPVSVVANPIMGETYVDPLNFAMADHGY 157
# +HGDV + S+ L+ SEE+ GAE + G+T D L+ A+A
# Sbjct: 52 KHGDVAVSTHDSEQVAVTARLSGPSEERVDGAE--------VAGQTGADGLSVALAGTTD 103
#
# Query: 158 GEGAGFD 164
# G A FD
# Sbjct: 104 GVSAAFD 110
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,895,994
Number of Sequences: 108091
Number of extensions: 745448
Number of successful extensions: 1903
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 29
length of query: 283
length of database: 33,061,072
effective HSP length: 104
effective length of query: 179
effective length of database: 21,819,608
effective search space: 3905709832
effective search space used: 3905709832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)