Table 7. Late-repressed genes: Time-course Profiles.
Genes under the control of phyA that
are repressed by far-red light (FRc) within 3 to 24 hours. Click on Accession number to view complete, 24-hour time-course profiles for each gene (Supplemental Material, Note 4). WT expression levels (blue), phyA mutant (red).
Functional Classification | Gene name | Protein Accession # |
Transcription | Contains similarity to gb|AJ000644
SPOPspeckle-type POZ protein | AAD41432 |
Transcription | homeobox protein HAT22 | CAB38927 |
Transcription | ATHB-12 | AAC39462 |
Transcription | putative DNA-binding protein | CAB45914 |
Transcription | H-protein promoter binding factor-1
| AAC24592 |
Transcription | putative RNA-binding protein | AAD21720 |
Transcription | R2R3-MYB transcription factor | CAB09226 |
Transcription | ethylene responsive element binding factor
5 | BAA32422 |
Transcription | putative DNA binding protein | CAA16566 |
Transcription | putative RING-H2 finger protein RHA2b
| AAD14516 |
Transcription | myb-like protein | CAB41106 |
Transcription | zinc finger protein 2 | AAD33770 |
Transcription | RGA2 protein | CAA72178 |
Transcription | putative transcription factor | AAC83596 |
Transcription | homologous to GATA-binding transcription
factors | CAA74002 |
Transcription | ARR2 protein | BAA74527 |
Transcription | ARGININE/SERINE-RICH SPLICING FACTOR
RSP31 | CAB71893 |
Transcription | putative GATA-type zinc finger
transcription factor | AAD32831 |
Transcription | putative bZIP transcription factor | AAD12004 |
Transcription | RAV1 | BAA34250 |
Transcription | scarecrow-like 21 | AAF21044 |
Transcription | homeobox protein | AAA56906 |
Transcription | zinc-finger-like protein | CAB39777 |
Transcription | putative C2H2-type zinc finger protein
| AAD20087 |
Transcription | RING-H2 zinc finger protein ATL4 | AAD33582 |
Transcription | homeobox protein | AAA56901 |
Transcription | zinc finger protein isolog | AAB63618 |
Transcription | putative MADS-box protein ANR1 | AAD25638 |
Photosynthesis/Chloroplast | NADPH thioredoxin reductase
| CAA80655 |
Photosynthesis/Chloroplast | responsible for fatty acid
elongation from C28 to C30 | CAA63618 |
Photosynthesis/Chloroplast | protein disulfide-isomerase-
like protein | CAB41088 |
Photosynthesis/Chloroplast | NADPH:protochlorophyllide
oxidoreductase A | AAC49043 |
Cellular Metabolism | cytochrome P450 | CAA66458 |
Cellular Metabolism | Similar to gb|AF099053
phosphatidylserine synthase-2 | AAD39639 |
Cellular Metabolism | putative lipase | AAB63082 |
Cellular Metabolism | putative symbiosis-related protein
| AAD29776 |
Cellular Metabolism | Translation factor EF-1 alpha - like
protein | CAA16563 |
Cellular Metabolism | aldehyde dehydrogenase
(NAD+) | AAC98035 |
Cellular Metabolism | putative phosphatidylserine
decarboxylase | CAB39662 |
Cellular Metabolism | Phosphoglycerate dehydrogenase -
like protein | CAA17552 |
Cellular Metabolism | putative aconitase | CAB36543 |
Cellular Metabolism | xanthine dehydrogenase-like protein
| CAB45450 |
Cellular Metabolism | phosphoenolpyruvate carboxykinase
(ATP)-like protein | CAB38935 |
Cellular Metabolism | carnitine racemase like protein
| CAB10223 |
Cellular Metabolism | putative steroid dehydrogenase
| AAB80678 |
Cellular Metabolism | 10-formyltetrahydrofolate
synthetase | AAD56290 |
Cellular Metabolism | nodulin-like protein | CAB45799 |
Cellular Metabolism | pectinesterase-like protein | CAB36796 |
Cellular Metabolism | vegetative storage like
protein | AAD10666 |
Cellular Metabolism | putative transketolase precursor
| AAB82634 |
Cellular Metabolism | anthranilate N-benzoyltransferase-
like protein | CAB69849 |
Cellular Metabolism | glutamate decarboxylase | AAA93132 |
Cellular Metabolism | possible aldehyde decarbonylase
| BAA11024 |
Cellular Metabolism | phosphoglycerate dehydrogenase
| BAA24440 |
Cellular Metabolism | putative GDSL-motif lipase/hydrolase
| AAD25823 |
Cellular Metabolism | putative nonspecific lipid-transfer
protein | AAC67365 |
Cellular Metabolism | lipase | AAA93262 |
Cellular Metabolism | putative steroid sulfotransferase
| AAD20078 |
Cellular Metabolism | putative aspartic protease | AAD29758 |
Cellular Metabolism | SEC14-like protein | CAB43633 |
Cellular Metabolism | cinnamyl-alcohol dehydrogenase CAD1
| CAB43648 |
Cellular Metabolism | aldehyde dehydrogenase like protein
| CAA18131 |
Cellular Metabolism | putative phosphoribosylanthranilate
transferase | CAB39932 |
Cellular Metabolism | putative RAD50 DNA repair protein
| AAD15407 |
Cellular Metabolism | 3-hydroxy-3-methylglutaryl-CoA
reductase | AAA67317 |
Cellular Metabolism | similar to glycosyl hydrolases family
9 | AAC28173 |
Cellular Metabolism | Highly Similar to branched-chain
amino acid aminotransferase | AAC34333 |
Cellular Metabolism | phosphoenolpyruvate carboxylase
| AAC24594 |
Cellular Metabolism | glutamine-dependent asparagine
synthetase | CAB51206 |
Cellular Metabolism | 3-methylcrotonyl-CoA carboxylase
precursor protein | AAD25800 |
Cellular Metabolism | homogentisate 1,2-dioxygenase
| AAD00360 |
Cellular Metabolism | similar to 2,4-dihydroxyhept-2-ene-
1,7-dioic acid aldolases | AAC35519 |
Cellular Metabolism | C-8,7 sterol isomerase | AAD03489 |
Cellular Metabolism | recA-like protein | BAA08255 |
Cellular Metabolism | uridine diphosphate glucose epimerase
| CAA90941 |
Cellular Metabolism | alanine:glyoxylate aminotransferase
2 homolog | AAD48837 |
Cellular Metabolism | putative cytochrome P450 | AAB87109 |
Cellular Metabolism | putative dioxygenase | AAC20719 |
Cellular Metabolism | putative oxidoreductase | CAB39626 |
Cellular Metabolism | branched-chain alpha keto-acid
dehydrogenase E1 alpha subunit | AAC69851 |
Cellular Metabolism | endo-1,4-beta-glucanase | CAA67156 |
Cellular Metabolism | Similar to sucrose synthase | AAC28175 |
Cellular Metabolism | putative flavonol 3-O-
glucosyltransferase | AAC35240 |
Cellular Metabolism | putative flavonol 3-O-
glucosyltransferase | AAC35239 |
Cellular Metabolism | ribosomal protein S14 | CAB40383 |
Cellular Metabolism | copper amine oxidase like protein
| CAB45975 |
Signaling | phyC photoreceptor | CAA35223 |
Signaling | protein kinase-like protein | CAB41172 |
Signaling | protein kinase | BAA24694 |
Signaling | putative phosphatidylinositol-4-phosphate 5-
kinase | AAC78530 |
Signaling | putative MAP kinase | AAC67338 |
Signaling | 14-3-3 protein | AAD46005 |
Transporters | putative ABC transporter | AAC34225 |
Transporters | putative ABC transporter | AAC28975 |
Transporters | putative Na+/H+-exchanging protein
| CAA23036 |
Transporters | histidine transport protein (PTR2-B)
| AAD20096 |
Transporters | putative zinc transporter | AAC24198 |
Transporters | sugar transporter like protein | CAB16808 |
Transporters | ammonium transporter | AAD54638 |
Transporters | putative cadmium-transporting ATPase
| AAD12041 |
Growth/Development | glycine rich protein
thaliana] | CAA78712 |
Growth/Development | glycine rich protein | CAA78711 |
Growth/Development | putative polygalacturonase
| AAC02763 |
Growth/Development | blue copper-binding protein, 15K
(lamin) | CAB41005 |
Growth/Development | glucosyltransferase -like protein
| CAA17559 |
Growth/Development | caltractin-like protein | CAB16762 |
Growth/Development | patatin-like protein | CAB16788 |
Growth/Development | male sterility 2-like protein
| CAA68191 |
Growth/Development | fimbrin 2 | AAB97847 |
Growth/Development | Strong similarity to Arabidopsis
myosin MYA1 | AAB80627 |
Growth/Development | putative expansin | AAC23634 |
Growth/Development | putative proline-rich protein
| AAD29802 |
Growth/Development | strong similarity to meri 5
| AAC27142 |
Growth/Development | Strong similarity to Musa pectate
lyase | AAB80622 |
Growth/Development | AnnAt4 | AAF14581 |
Growth/Development | contains similarity to expansins
| AAC72858 |
Growth/Development | elongation factor-1 beta A1
| CAA52751 |
Growth/Development | xyloglucan endotransglycosylase-
related protein | AAB18368 |
Growth/Development | patatin-like protein | CAB16787 |
Growth/Development | beta-6 tubulin | AAA32884 |
Growth/Development | ATPME2 precursor | AAC50023 |
Growth/Development | endoxyloglucan transferase
| BAA81669 |
Growth/Development | oleosin | CAA44225 |
Growth/Development | extensin like protein | CAA22151 |
Hormone-related | putative N-acetyltransferase hookless1
| AAB03774 |
Hormone-related | ethylene responsive element binding
factor 3 | BAA32420 |
Hormone-related | ethylene responsive element binding
factor 1 | BAA32418 |
Hormone-related | GH3 like protein | CAA19720 |
Hormone-related | ABI2 protein phosphatase 2C | CAA70163 |
Hormone-related | putative auxin efflux carrier AGR
| AAC61781 |
Hormone-related | IAA19 | AAB84356 |
Hormone-related | putative auxin-regulated protein
| AAD20125 |
Hormone-related | putative auxin-regulated protein
| AAB82641 |
Hormone-related | putative homolog of transport inhibitor
response 1 | AAD14447 |
Hormone-related | IAA6 | AAC49047 |
Hormone-related | 1-aminocyclopropane 1-carboxylate
synthase [Arabidopsis | CAA78260 |
Hormone-related | ILR1 | AAB60293 |
Hormone-related | IAA20 | AAB84357 |
Hormone-related | SAUR-AC-like protein (small auxin up
RNA) | CAB36843 |
Hormone-related | gibberellin-regulated | AAA74480 |
Hormone-related | GA4 | AAC37506 |
Hormone-related | similar to gibberellin-regulated proteins
| AAC61287 |
Hormone-related | auxin-induced protein (IAA20) | AAC34236 |
Stress/Defense | AtPIP5K1 | BAA33501 |
Stress/Defense | catalase 3 | AAC49807 |
Stress/Defense | OPDA-reductase homolog | AAD38925 |
Stress/Defense | metallothionein-like protein | AAB87107 |
Stress/Defense | 12-oxophytodienoate reductase OPR1
thaliana] | AAC78440 |
Stress/Defense | glutathione transferase | CAA72973 |
Stress/Defense | glutathione S-transferase | AAC20721 |
Stress/Defense | putative glutathione S-transferase
| AAC95189 |
Stress/Defense | putative cysteine proteinase inhibitor B
(cystatin B | AAD15406 |
Stress/Defense | putative disease resistance response
protein | CAA23035 |
Stress/Defense | peroxidase precursor | AAB94661 |
Stress/Defense | putative cysteine proteinase inhibitor B
(cystatin B) | AAB86448 |
Stress/Defense | LEA76 homologue type2 | CAA63006 |
Stress/Defense | Barley Mlo protein isolog | AAB65495 |
Stress/Defense | putative glutathione S-transferase
| AAC78521 |
Stress/Defense | trehalase precusor isolog | AAB63620 |
Stress/Defense | peroxidase ATP8a | CAA67361 |
Stress/Defense | putative nematode-resistance protein
| AAB95285 |
Stress/Defense | peroxidase | CAA66963 |
Stress/Defense | respiratory burst oxidase protein B
| AAC39476 |
Stress/Defense | similar to late embryogenesis abundant
proteins | AAC17827 |
Stress/Defense | peroxidase | CAA07352 |
Stress/Defense | selenium-binding protein like | CAB46000 |
Stress/Defense | late embryogenesis abundant M10 protein
| AAC78544 |
Stress/Defense | Contains similarity to DnaJ gene
| AAC27138 |
Stress/Defense | thaumatin-like protein | CAA18495 |
Stress/Defense | cysteine proteinase inhibitor like protein
| CAB10426 |
Stress/Defense | pEARLI 1-like protein | CAB41722 |
Hypothetical/Unknown | unknown protein | CAB42594 |
Hypothetical/Unknown | unknown protein | AAC02771 |
Hypothetical/Unknown | unknown protein | AAC72128 |
Hypothetical/Unknown | unknown protein | AAD22649 |
Hypothetical/Unknown | unknown protein | AAB86457 |
Hypothetical/Unknown | unknown protein | AAF24813 |
Hypothetical/Unknown | unknown protein | AAC67322 |
Hypothetical/Unknown | unknown protein | CAB41089 |
Hypothetical/Unknown | unknown protein | AAC23645 |
Hypothetical/Unknown | unknown protein | AAF26470 |
Hypothetical/Unknown | unknown protein | CAA19822 |
Hypothetical/Unknown | unknown protein | AAC13630 |
Hypothetical/Unknown | unknown protein | AAD32864 |
Hypothetical/Unknown | unknown protein | CAB43700 |
Hypothetical/Unknown | unknown protein | CAA16582 |
Hypothetical/Unknown | unknown protein | AAC00619 |
Hypothetical/Unknown | unknown protein | AAD18096 |
Hypothetical/Unknown | unknown protein | AAC69935 |
Hypothetical/Unknown | unknown protein | CAB39606 |
Hypothetical/Unknown | unknown protein | AAF16756 |
Hypothetical/Unknown | unknown protein | CAA17570 |
Hypothetical/Unknown | unknown protein | CAB37490 |
Hypothetical/Unknown | unknown protein | AAC19282 |
Hypothetical/Unknown | unknown protein | AAC34356 |
Hypothetical/Unknown | unknown protein | AAD24597 |
Hypothetical/Unknown | unknown protein | AAD15439 |
Hypothetical/Unknown | unknown protein | AAD11994 |
Hypothetical/Unknown | unknown protein | CAA19764 |
Hypothetical/Unknown | unknown protein | CAA16754 |
Hypothetical/Unknown | unknown protein | AAD10681 |
Hypothetical/Unknown | unknown protein | * |
Hypothetical/Unknown | unknown protein | AAD22328 |
Hypothetical/Unknown | unknown protein | AAB61491 |
Hypothetical/Unknown | unknown protein | AAB87114 |
Hypothetical/Unknown | unknown protein | AAB61480 |
Hypothetical/Unknown | unknown protein | * |
Hypothetical/Unknown | unknown protein | AAD25759 |
Hypothetical/Unknown | unknown protein | AAD22657 |
Hypothetical/Unknown | unknown protein | CAB16754 |
Hypothetical/Unknown | unknown protein | AAC78702 |
Hypothetical/Unknown | unknown protein | AAC00613 |
Hypothetical/Unknown | unknown protein | AAD39663 |
Hypothetical/Unknown | unknown protein | CAB42910 |
Hypothetical/Unknown | unknown protein | AAD15574 |
Hypothetical/Unknown | unknown protein | CAA22573 |
Hypothetical/Unknown | unknown protein | CAA17569 |
Hypothetical/Unknown | unknown protein | AAC17091 |
Hypothetical/Unknown | unknown protein | AAB70431 |
Hypothetical/Unknown | unknown protein | AAD23666 |
Hypothetical/Unknown | unknown protein | AAD15577 |
Hypothetical/Unknown | unknown protein | AAC16087 |
Hypothetical/Unknown | unknown protein | AAC63633 |
Hypothetical/Unknown | unknown protein | CAB38920 |
Hypothetical/Unknown | unknown protein | AAB84345 |
Hypothetical/Unknown | unknown protein | AAC98053 |
Hypothetical/Unknown | unknown protein | AAB82630 |
Hypothetical/Unknown | unknown protein | AAD12008 |
Hypothetical/Unknown | unknown protein | AAB64323 |
Hypothetical/Unknown | unknown protein | AAC13620 |
Hypothetical/Unknown | unknown protein | CAA20042 |
Hypothetical/Unknown | unknown protein | AAD39636 |
Hypothetical/Unknown | unknown protein | CAA23021 |
Hypothetical/Unknown | unknown protein | CAA19705 |
Hypothetical/Unknown | unknown protein | AAF18671 |
Hypothetical/Unknown | unknown protein | CAA18854 |
Hypothetical/Unknown | unknown protein | CAB45783 |
Hypothetical/Unknown | unknown protein | AAD43605 |
Hypothetical/Unknown | unknown protein | AAC97991 |
Hypothetical/Unknown | unknown protein | AAC61819 |
Hypothetical/Unknown | unknown protein | CAA10955 |
Hypothetical/Unknown | unknown protein | AAC62120 |
Hypothetical/Unknown | unknown protein | AAC17615 |
Hypothetical/Unknown | unknown protein | CAB10442 |
Hypothetical/Unknown | unknown protein | AAC28533 |
Hypothetical/Unknown | unknown protein | AAD14534 |
Hypothetical/Unknown | unknown protein | AAD21475 |
Hypothetical/Unknown | unknown protein | CAA18168 |
Hypothetical/Unknown | unknown protein | CAB16798 |
Hypothetical/Unknown | unknown protein | CAB41159 |
Hypothetical/Unknown | unknown protein | AAB67620 |
Hypothetical/Unknown | unknown protein | AAF22894 |
Hypothetical/Unknown | unknown protein | AAD22996 |
Hypothetical/Unknown | unknown protein | CAA21198 |
Hypothetical/Unknown | unknown protein | AAB61493 |