R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 98 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|461707|sp|P34687|CC34_CAEEL CUTICLE COLLAGEN 34 >gi|345339|pir||JC1448
collagen col-34 - Caenorhabditis elegans >gi|156250|gb|AAA27985.1|
(M80650) alpha-collagen [Caenorhabditis elegans]
Length = 298
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 298
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 106..271
Entrez Domain: TRIPLE-HELICAL REGION. 103..132
Entrez Domain: TRIPLE-HELICAL REGION. 151..177
Entrez Domain: TRIPLE-HELICAL REGION. 181..198
Entrez Domain: TRIPLE-HELICAL REGION. 215..277
PFAM Collagen: Collagen triple helix repeat ( 143..201
PFAM Collagen: Collagen triple helix repeat ( 215..274
PRODOM PD004226: 6..32
PRODOM PD000926: 34..100
PRODOM PD000540: H1(18) O76786(11) TONB(10) 102..197
PRODOM PD026369: CC34(1) Q20087(1) 238..258
PRODOM PD002391: 278..297
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 19/52 (36%), Positives = 23/52 (44%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
G P +P P P P G G+ G G P + G P + GER I KY
Sbjct: 233 GQPGADGSPGQPGPKGPNGPDGQPGADG-NPGAPGPAGPPGSPGERGICPKY 283
Score = 48 (16.9 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 11/31 (35%), Positives = 14/31 (45%), Frame = +2
Query: 65 GRPRRPNCSLEXRPQWRTGPKSP-GRGRQPG 154
GRP + C P W+ P+ P G PG
Sbjct: 130 GRPPQQPCEPITPPPWKPCPQGPPGPPGPPG 160
Score = 38 (13.4 bits), Expect = 0.0090, Sum P(2) = 0.0090
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = +2
Query: 83 NCSLEXRPQWRTGPKSPGRGRQPG 154
+C L P P PGR +PG
Sbjct: 98 SCCLPGPPGPAGTPGKPGRPGKPG 121
>gi|115399|sp|P16252|CAC2_HAECO CUTICLE COLLAGEN 2C >gi|159167|gb|AAA29172.1|
(J04670) collagen 2c [Haemonchus contortus]
Length = 210
Frame 2 hits (HSPs): ____________
Frame 1 hits (HSPs): _____________
Annotated Domains: _______________ _______________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
__________________
Annotated Domains:
PFAM Collagen: Collagen triple helix repeat ( 62..121
PFAM Collagen: Collagen triple helix repeat ( 130..189
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.0024, Sum P(2) = 0.0024
Identities = 19/52 (36%), Positives = 21/52 (40%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
GAP AP P PRG G G G G +P GER + KY
Sbjct: 145 GAPGHPGAPGAPGEKGPRGQDGHPGAPGNAGHPGQPGQPG-PPGERGVCPKY 195
Score = 40 (14.1 bits), Expect = 0.0024, Sum P(2) = 0.0024
Identities = 12/39 (30%), Positives = 14/39 (35%), Frame = +2
Query: 50 PTMKIGRPRRPNCSLEXRPQWRTGPKSP----GRGRQPG 154
P + G P P P GPK P G+ PG
Sbjct: 72 PPGEPGTPGNPGAPGNDAPPGPPGPKGPPGPPGKAGAPG 110
Score = 39 (13.7 bits), Expect = 0.0031, Sum P(2) = 0.0031
Identities = 9/18 (50%), Positives = 10/18 (55%), Frame = +2
Query: 104 PQWRTGPKSP-GRGRQPG 154
PQ R GP P G +PG
Sbjct: 60 PQGRPGPPGPIGPPGEPG 77
>gi|321007|pir||B44984 collagen - nematode (Haemonchus contortus) (fragment)
Length = 210
Frame 2 hits (HSPs): ____________
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.0024, Sum P(2) = 0.0024
Identities = 19/52 (36%), Positives = 21/52 (40%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
GAP AP P PRG G G G G +P GER + KY
Sbjct: 145 GAPGHPGAPGAPGEKGPRGQDGHPGAPGNAGHPGQPGQPG-PPGERGVCPKY 195
Score = 40 (14.1 bits), Expect = 0.0024, Sum P(2) = 0.0024
Identities = 12/39 (30%), Positives = 14/39 (35%), Frame = +2
Query: 50 PTMKIGRPRRPNCSLEXRPQWRTGPKSP----GRGRQPG 154
P + G P P P GPK P G+ PG
Sbjct: 72 PPGEPGTPGNPGAPGNDAPPGPPGPKGPPGPPGKAGAPG 110
Score = 39 (13.7 bits), Expect = 0.0031, Sum P(2) = 0.0031
Identities = 9/18 (50%), Positives = 10/18 (55%), Frame = +2
Query: 104 PQWRTGPKSP-GRGRQPG 154
PQ R GP P G +PG
Sbjct: 60 PQGRPGPPGPIGPPGEPG 77
>gi|7500590|pir||T29956 hypothetical protein F36A4.10 - Caenorhabditis elegans
>gi|1255802|gb|AAA96155.1| (U53333) coded for by C. elegans cDNA
yk120g12.5; Similar to cuticular collagen [Caenorhabditis elegans]
Length = 299
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 299
0 50 100 150 200 250
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.0091, Sum P(2) = 0.0090
Identities = 19/52 (36%), Positives = 23/52 (44%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
G P +P P P P G G+ G G P + G P + GER I KY
Sbjct: 234 GQPGADGSPGQPGPKGPNGPDGQPGADG-NPGAPGPAGPPGSPGERGICPKY 284
Score = 38 (13.4 bits), Expect = 0.0091, Sum P(2) = 0.0090
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = +2
Query: 83 NCSLEXRPQWRTGPKSPGRGRQPG 154
+C L P P PGR +PG
Sbjct: 98 SCCLPGPPGPAGTPGKPGRPGKPG 121
Score = 35 (12.3 bits), Expect = 0.018, Sum P(2) = 0.018
Identities = 10/31 (32%), Positives = 13/31 (41%), Frame = +2
Query: 65 GRPRRPNCSLEXRPQWRTGPKSP-GRGRQPG 154
GRP + C P + P+ P G PG
Sbjct: 130 GRPPQQPCEPITPPPCKPCPQGPPGPPGPPG 160
>gi|7331814|gb|AAF60502.1| (AC006743) contains similarity to Pfam family
PF01391 (Collagen triple helix repeats), score=66, E=8.2e-16, N=2
[Caenorhabditis elegans]
Length = 291
Frame 2 hits (HSPs): _______ ______
Frame 1 hits (HSPs): _________ __________
__________________________________________________
Database sequence: | | | | | | | 291
0 50 100 150 200 250
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.014, P = 0.014
Identities = 19/47 (40%), Positives = 23/47 (48%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERP 279
G P R +P P PV P GA G+SG G + G RP +T P
Sbjct: 161 GNPGRPGSPGTPGPVGPNGASGDSGAPGNDGEKGEPGRPAQSTPSTP 207
Score = 65 (22.9 bits), Expect = 0.59, Sum P(2) = 0.45
Identities = 23/52 (44%), Positives = 26/52 (50%), Frame = +1
Query: 139 GAPARVRAPSC---PDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
GAP R P P P P G VGE+G G +P G P+ GER I KY
Sbjct: 226 GAPGRDGQPGQSGPPGPPGPPGNVGEAGPPG-KPGQPGLPGPQ---GERGICPKY 276
Score = 42 (14.8 bits), Expect = 0.59, Sum P(2) = 0.45
Identities = 15/35 (42%), Positives = 17/35 (48%), Frame = +2
Query: 59 KIGRPRRPNCSLEXRPQWRTG-PKSPGRGRQPG*EP 163
K G P RP L R + G P +PGR PG P
Sbjct: 94 KPGHPGRPG--LPGR-NGKPGVPGAPGRPGTPGRPP 126
Score = 34 (12.0 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 10/30 (33%), Positives = 10/30 (33%), Frame = +2
Query: 65 GRPRRPNCSLEXRPQWRTGPKSPGRGRQPG 154
G P RP S P P G PG
Sbjct: 194 GEPGRPAQSTPSTPGEPGNPGDAGATGAPG 223
>gi|9625710 ref|NP_039959.1| UL25 FAMILY [human herpesvirus 5]
>gi|136862|sp|P16761|UL25_HCMVA HYPOTHETICAL PROTEIN UL25
>gi|73666|pir||QQBET2 UL25 protein - human cytomegalovirus (strain
AD169) >gi|59630|emb|CAA35424.1| (X17403) UL25 FAMILY [human
herpesvirus 5]
Length = 656
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 656
0 150 300 450 600
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.040, Sum P(2) = 0.039
Identities = 18/58 (31%), Positives = 27/58 (46%), Frame = -1
Query: 224 IPKQPDSPTAPRGATGSGHDGALTLAGAPFQGTWARS-ATEDASPDYNSDAEGDRFSW 54
+ + P P+ P G G D + G+ + T S +T +P S AEGD FS+
Sbjct: 120 VSRPPSVPSLPENGAGGGGDDNSSSGGSSSRTTSNSSRSTSPVAPGEPSAAEGDEFSF 177
Score = 40 (14.1 bits), Expect = 0.040, Sum P(2) = 0.039
Identities = 8/12 (66%), Positives = 9/12 (75%), Frame = -2
Query: 52 GXFPVRSPLLRE 17
G F VR PLLR+
Sbjct: 534 GEFMVRDPLLRD 545
>gi|2978419|gb|AAC06113.1| (M63709) alpha-1 type II collagen [Mus musculus]
Length = 115
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.084, P = 0.080
Identities = 26/85 (30%), Positives = 29/85 (34%), Frame = +1
Query: 31 AXEPGKXHHENRSPSASEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVGES 210
A EPG+ G A DR + GAP P P P P G G+
Sbjct: 1 AGEPGREGSPGADGPPGR--DGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDR 58
Query: 211 GCLGMQPQSGGKFRPRLNTGERPIA 285
G G Q G P G R IA
Sbjct: 59 GEAGAQ----GPMGPSGPAGARGIA 79
>gi|3242649|dbj|BAA29028.1| (AB015440) alpha 1 type I collagen [Rana
catesbeiana]
Length = 1445
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 1445
0 500 1000
Minus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.10, Sum P(2) = 0.099
Identities = 24/49 (48%), Positives = 28/49 (57%), Frame = -1
Query: 281 IGLS-PVFSLG-RNLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAGAP 138
+G S P S G R P + G I P P PRGA G+ G+DGA AGAP
Sbjct: 652 VGPSGPAGSRGERGFPGERGAIG--PPGPQGPRGANGAPGNDGAKGEAGAP 700
Score = 35 (12.3 bits), Expect = 0.10, Sum P(2) = 0.099
Identities = 11/29 (37%), Positives = 13/29 (44%), Frame = -3
Query: 150 GWRPLPGDLGPVRH*GRXSRLQFGRRGRP 64
G LPG +GP GR + G G P
Sbjct: 1139 GSNGLPGPIGPPGPRGRTGDV--GPAGPP 1165
>gi|115267|sp||CA11_BOVIN_2 [Segment 2 of 2] COLLAGEN ALPHA 1(I) CHAIN
Length = 634
Frame 1 hits (HSPs): ______
Frame -1 hits (HSPs): ____
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 634
0 150 300 450 600
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.64, P = 0.47
Identities = 23/65 (35%), Positives = 28/65 (43%), Frame = +1
Query: 31 AXEPGKXHHENRSPSA--SEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E +P A S G + DR + GAP AP P PV P G G
Sbjct: 423 AGPPGESGREG-APGAEGSPGRDGSPGAKGDRGETGPAGAPGPPGAPGAPGPVGPAGKSG 481
Query: 205 ESGCLG 222
+ G G
Sbjct: 482 DRGETG 487
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 18/38 (47%), Positives = 22/38 (57%), Frame = -1
Query: 251 RNLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAGAP 138
R P + G + P P PRGA G+ G+DGA AGAP
Sbjct: 99 RGFPGERGV--EGPPGPAGPRGANGAPGNDGAKGDAGAP 135
Score = 35 (12.3 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 11/29 (37%), Positives = 12/29 (41%), Frame = -3
Query: 150 GWRPLPGDLGPVRH*GRXSRLQFGRRGRP 64
G LPG +GP GR G G P
Sbjct: 571 GLNGLPGPIGPPGPRGRTG--DAGPAGPP 597
>gi|4836662|gb|AAD30510.1|AF129925_4 (AF129925) CsoS2 [Acidithiobacillus
ferrooxidans]
Length = 766
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | 766
0 150 300 450 600 750
Minus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.14, Sum P(2) = 0.13
Identities = 17/57 (29%), Positives = 27/57 (47%), Frame = -1
Query: 233 WGCIPKQPDSPTAPRGA-TGSGHDGALTLAGAPFQGTWARSATEDASPDYNSDAEGDR 63
+G +P + PR TG GH+G + GA ++ + + TE S N GD+
Sbjct: 666 YGAVPTTA-ATEVPRSRLTGDGHEGGFAITGAAWRRNESITGTEGTSTRRNQTLRGDQ 722
Score = 35 (12.3 bits), Expect = 0.14, Sum P(2) = 0.13
Identities = 6/15 (40%), Positives = 8/15 (53%), Frame = -2
Query: 295 GTCSLSVSRQYLALD 251
GTC +YL+ D
Sbjct: 325 GTCKAVTGTEYLSAD 339
>gi|227093|prf||1614239A collagen alpha1(V) 66-267 [Homo sapiens]
Length = 202
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.15, P = 0.14
Identities = 22/68 (32%), Positives = 25/68 (36%), Frame = +1
Query: 43 GKXHHENRSPSASEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVGESGCLG 222
GK H + S G D QV +G P + P P P G GE G G
Sbjct: 21 GKGHRGDPGLSGPPGPPGDDGEEGDDGQVGPRGLPGQPGPRGLPGPKGPPGVTGEPGAPG 80
Query: 223 MQPQSGGK 246
M Q G K
Sbjct: 81 MDGQPGPK 88
>gi|263810|gb|AAB24972.1| collagen alpha chain [Riftia pachyptila=tube worms,
Peptide, 1027 aa]
Length = 1027
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | | | | 1027
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.17, Sum P(2) = 0.15
Identities = 17/36 (47%), Positives = 17/36 (47%), Frame = -1
Query: 248 NLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAG 144
N PD G P P P PRG TG G DG L G
Sbjct: 116 NQGPDGGPGPAGPSGPIGPRGQTGERGRDGKSGLPG 151
Score = 39 (13.7 bits), Expect = 0.17, Sum P(2) = 0.15
Identities = 10/24 (41%), Positives = 12/24 (50%), Frame = -3
Query: 135 PGDLGPVRH*GRXSRLQFGRRGRP 64
PGD+G H G G+RG P
Sbjct: 285 PGDVGAPGHAGEA-----GKRGSP 303
Score = 34 (12.0 bits), Expect = 0.54, Sum P(2) = 0.42
Identities = 7/11 (63%), Positives = 7/11 (63%), Frame = -3
Query: 150 GWRPLPGDLGP 118
G R LPG GP
Sbjct: 883 GQRGLPGAAGP 893
>gi|399170|sp|P30754|CAFF_RIFPA FIBRIL-FORMING COLLAGEN ALPHA CHAIN
Length = 1027
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): __ __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 1027
0 150 300 450 600 750 900
__________________
Annotated Domains:
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 17..151
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 153..331
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 333..424
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 426..615
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 617..711
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 713..861
Entrez Domain: NONHELICAL REGION (N-TERMINAL). 1..12
Entrez Domain: TRIPLE-HELICAL REGION. 13..1023
Entrez Domain: NONHELICAL REGION (C-TERMINAL). 1024..1027
Entrez hydroxylation site: (PARTIAL). 21
Entrez hydroxylation site: (PARTIAL). 24
Entrez hydroxylation site 27
Entrez hydroxylation site 39
Entrez hydroxylation site: (PARTIAL). 53
Entrez hydroxylation site 54
Entrez hydroxylation site: (PARTIAL). 72
Entrez hydroxylation site 90
Entrez hydroxylation site 93
Entrez hydroxylation site: (PARTIAL). 123
Entrez hydroxylation site: (PARTIAL). 128
Entrez hydroxylation site 150
Entrez hydroxylation site: (PARTIAL). 161
Entrez hydroxylation site 162
Entrez hydroxylation site: (PARTIAL). 164
Entrez hydroxylation site 165
Entrez hydroxylation site 174
Entrez hydroxylation site 177
Entrez hydroxylation site 180
Entrez hydroxylation site 183
Entrez hydroxylation site 207
Entrez hydroxylation site 216
Entrez hydroxylation site 219
Entrez hydroxylation site 228
Entrez hydroxylation site 237
Entrez hydroxylation site: (PARTIAL). 243
Entrez hydroxylation site 249
Entrez hydroxylation site 255
Entrez hydroxylation site: (PARTIAL). 273
Entrez hydroxylation site: (PARTIAL). 276
Entrez hydroxylation site: (PARTIAL). 285
Entrez hydroxylation site: (PARTIAL). 291
Entrez hydroxylation site: (PARTIAL). 303
Entrez hydroxylation site 306
Entrez hydroxylation site 312
Entrez hydroxylation site 321
Entrez hydroxylation site 327
Entrez hydroxylation site 339
Entrez hydroxylation site 342
Entrez hydroxylation site: (PARTIAL). 348
Entrez hydroxylation site: (PARTIAL). 351
Entrez hydroxylation site 366
Entrez hydroxylation site 372
Entrez hydroxylation site 375
Entrez hydroxylation site: (PARTIAL). 381
Entrez hydroxylation site 387
Entrez hydroxylation site: (PARTIAL). 416
Entrez hydroxylation site 417
Entrez hydroxylation site 423
Entrez hydroxylation site 429
Entrez hydroxylation site 432
Entrez hydroxylation site 453
Entrez hydroxylation site 465
Entrez hydroxylation site 483
Entrez hydroxylation site: (PARTIAL). 500
Entrez hydroxylation site: (PARTIAL). 503
Entrez hydroxylation site: (PARTIAL). 506
Entrez hydroxylation site 513
Entrez hydroxylation site 525
Entrez hydroxylation site: (PARTIAL). 533
Entrez hydroxylation site: (PARTIAL). 536
Entrez hydroxylation site 540
Entrez hydroxylation site 546
Entrez hydroxylation site: (PARTIAL). 551
Entrez hydroxylation site 552
Entrez hydroxylation site 561
Entrez hydroxylation site 603
Entrez other site: IMPERFECTION IN THE GAA REPE 610
Entrez hydroxylation site: (PARTIAL). 621
Entrez hydroxylation site 627
Entrez hydroxylation site: (PARTIAL). 645
Entrez hydroxylation site: (PARTIAL). 647
Entrez hydroxylation site 648
Entrez hydroxylation site 663
Entrez hydroxylation site 708
Entrez hydroxylation site 711
Entrez hydroxylation site 714
Entrez hydroxylation site 717
Entrez hydroxylation site 723
Entrez hydroxylation site 744
Entrez hydroxylation site 759
Entrez hydroxylation site: (PARTIAL). 773
Entrez hydroxylation site 774
Entrez hydroxylation site 783
Entrez hydroxylation site 792
Entrez hydroxylation site: (PARTIAL). 815
Entrez hydroxylation site 816
Entrez hydroxylation site 843
Entrez hydroxylation site 849
Entrez hydroxylation site 855
Entrez hydroxylation site 861
Entrez hydroxylation site 867
Entrez hydroxylation site 888
Entrez hydroxylation site 894
Entrez hydroxylation site 903
Entrez hydroxylation site 915
Entrez hydroxylation site: (PARTIAL). 933
Entrez hydroxylation site 939
Entrez hydroxylation site 945
Entrez hydroxylation site: (PARTIAL). 954
Entrez hydroxylation site 963
Entrez hydroxylation site 966
Entrez hydroxylation site 984
Entrez hydroxylation site 990
Entrez hydroxylation site: (PARTIAL). 1010
Entrez hydroxylation site 1011
Entrez hydroxylation site: (PARTIAL). 1013
Entrez hydroxylation site 1014
Entrez hydroxylation site: (PARTIAL). 1016
Entrez hydroxylation site 1017
Entrez hydroxylation site: (PARTIAL). 1019
Entrez hydroxylation site 1020
PFAM Collagen: Collagen triple helix repeat ( 19..78
PFAM Collagen: Collagen triple helix repeat ( 79..138
PFAM Collagen: Collagen triple helix repeat ( 142..201
PFAM Collagen: Collagen triple helix repeat ( 205..264
PFAM Collagen: Collagen triple helix repeat ( 265..324
PFAM Collagen: Collagen triple helix repeat ( 325..384
PFAM Collagen: Collagen triple helix repeat ( 397..456
PFAM Collagen: Collagen triple helix repeat ( 457..516
PFAM Collagen: Collagen triple helix repeat ( 520..579
PFAM Collagen: Collagen triple helix repeat ( 583..642
PFAM Collagen: Collagen triple helix repeat ( 643..702
PFAM Collagen: Collagen triple helix repeat ( 706..765
PFAM Collagen: Collagen triple helix repeat ( 766..825
PFAM Collagen: Collagen triple helix repeat ( 838..897
PFAM Collagen: Collagen triple helix repeat ( 898..957
PFAM Collagen: Collagen triple helix repeat ( 958..1017
PRODOM PD193117: CAFF_RIFPA 32..50
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 52..82
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 116..147
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 150..180
PRODOM PD026538: CAFF_RIFPA 182..217
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 219..249
PRODOM PD055865: CAFF_RIFPA 251..335
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 337..366
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 372..403
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 409..438
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 453..483
PRODOM PD159171: CAFF_RIFPA 485..521
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 523..553
PRODOM PD000277: CA14(15) Q26640(12) Q26639(11) 574..615
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 620..652
PRODOM PD193705: CAFF_RIFPA 654..677
PRODOM PD000277: CA14(15) Q26640(12) Q26639(11) 679..714
PRODOM PD193158: CAFF_RIFPA 729..753
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 755..792
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 838..867
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 888..919
PRODOM PD193594: CAFF_RIFPA 921..959
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 961..991
__________________
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.17, Sum P(2) = 0.15
Identities = 17/36 (47%), Positives = 17/36 (47%), Frame = -1
Query: 248 NLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAG 144
N PD G P P P PRG TG G DG L G
Sbjct: 116 NQGPDGGPGPAGPSGPIGPRGQTGERGRDGKSGLPG 151
Score = 39 (13.7 bits), Expect = 0.17, Sum P(2) = 0.15
Identities = 10/24 (41%), Positives = 12/24 (50%), Frame = -3
Query: 135 PGDLGPVRH*GRXSRLQFGRRGRP 64
PGD+G H G G+RG P
Sbjct: 285 PGDVGAPGHAGEA-----GKRGSP 303
Score = 34 (12.0 bits), Expect = 0.54, Sum P(2) = 0.42
Identities = 7/11 (63%), Positives = 7/11 (63%), Frame = -3
Query: 150 GWRPLPGDLGP 118
G R LPG GP
Sbjct: 883 GQRGLPGAAGP 893
>gi|2119156|pir||S28774 collagen alpha chain - tube worm (Riftia pachyptila)
(fragment)
Length = 1027
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): __ __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 1027
0 150 300 450 600 750 900
__________________
Annotated Domains:
Entrez domain: amino-terminal telopeptide (frag 1..12
Entrez domain: collagenous 13..1023
Entrez domain: carboxyl-terminal telopeptide (f 1024..1027
Entrez modified site: 4-hydroxyproline (Pro) (p 21
Entrez modified site: 4-hydroxyproline (Pro) (p 24
Entrez modified site: 4-hydroxyproline (Pro) (p 123
Entrez modified site: 4-hydroxyproline (Pro) (p 243
Entrez modified site: 4-hydroxyproline (Pro) (p 273
Entrez modified site: 4-hydroxyproline (Pro) (p 276
Entrez modified site: 4-hydroxyproline (Pro) (p 285
Entrez modified site: 4-hydroxyproline (Pro) (p 291
Entrez modified site: 4-hydroxyproline (Pro) (p 303
Entrez modified site: 4-hydroxyproline (Pro) (p 348
Entrez modified site: 4-hydroxyproline (Pro) (p 381
Entrez modified site: 4-hydroxyproline (Pro) (p 621
Entrez modified site: 4-hydroxyproline (Pro) (p 645
Entrez modified site: 4-hydroxyproline (Pro) 27
Entrez modified site: 4-hydroxyproline (Pro) 39
Entrez modified site: 4-hydroxyproline (Pro) 54
Entrez modified site: 4-hydroxyproline (Pro) 72
Entrez modified site: 4-hydroxyproline (Pro) 90
Entrez modified site: 4-hydroxyproline (Pro) 93
Entrez modified site: 4-hydroxyproline (Pro) 128
Entrez modified site: 4-hydroxyproline (Pro) 150
Entrez modified site: 4-hydroxyproline (Pro) 162
Entrez modified site: 4-hydroxyproline (Pro) 165
Entrez modified site: 4-hydroxyproline (Pro) 174
Entrez modified site: 4-hydroxyproline (Pro) 177
Entrez modified site: 4-hydroxyproline (Pro) 180
Entrez modified site: 4-hydroxyproline (Pro) 207
Entrez modified site: 4-hydroxyproline (Pro) 216
Entrez modified site: 4-hydroxyproline (Pro) 219
Entrez modified site: 4-hydroxyproline (Pro) 228
Entrez modified site: 4-hydroxyproline (Pro) 237
Entrez modified site: 4-hydroxyproline (Pro) 249
Entrez modified site: 4-hydroxyproline (Pro) 255
Entrez modified site: 4-hydroxyproline (Pro) 306
Entrez modified site: 4-hydroxyproline (Pro) 312
Entrez modified site: 4-hydroxyproline (Pro) 321
Entrez modified site: 4-hydroxyproline (Pro) 327
Entrez modified site: 4-hydroxyproline (Pro) 339
Entrez modified site: 4-hydroxyproline (Pro) 366
Entrez modified site: 4-hydroxyproline (Pro) 372
Entrez modified site: 4-hydroxyproline (Pro) 375
Entrez modified site: 4-hydroxyproline (Pro) 387
Entrez modified site: 4-hydroxyproline (Pro) 417
Entrez modified site: 4-hydroxyproline (Pro) 423
Entrez modified site: 4-hydroxyproline (Pro) 429
Entrez modified site: 4-hydroxyproline (Pro) 432
Entrez modified site: 4-hydroxyproline (Pro) 453
Entrez modified site: 4-hydroxyproline (Pro) 465
Entrez modified site: 4-hydroxyproline (Pro) 483
Entrez modified site: 4-hydroxyproline (Pro) 500
Entrez modified site: 4-hydroxyproline (Pro) 503
Entrez modified site: 4-hydroxyproline (Pro) 506
Entrez modified site: 4-hydroxyproline (Pro) 513
Entrez modified site: 4-hydroxyproline (Pro) 525
Entrez modified site: 4-hydroxyproline (Pro) 533
Entrez modified site: 4-hydroxyproline (Pro) 536
Entrez modified site: 4-hydroxyproline (Pro) 540
Entrez modified site: 4-hydroxyproline (Pro) 552
Entrez modified site: 4-hydroxyproline (Pro) 561
Entrez modified site: 4-hydroxyproline (Pro) 603
Entrez modified site: 4-hydroxyproline (Pro) 627
Entrez modified site: 4-hydroxyproline (Pro) 648
Entrez modified site: 4-hydroxyproline (Pro) 663
Entrez modified site: 4-hydroxyproline (Pro) 708
Entrez modified site: 4-hydroxyproline (Pro) 711
Entrez modified site: 4-hydroxyproline (Pro) 714
Entrez modified site: 4-hydroxyproline (Pro) 717
Entrez modified site: 4-hydroxyproline (Pro) 723
Entrez modified site: 4-hydroxyproline (Pro) 744
Entrez modified site: 4-hydroxyproline (Pro) 759
Entrez modified site: 4-hydroxyproline (Pro) 774
Entrez modified site: 4-hydroxyproline (Pro) 783
Entrez modified site: 4-hydroxyproline (Pro) 792
Entrez modified site: 4-hydroxyproline (Pro) 816
Entrez modified site: 4-hydroxyproline (Pro) 843
Entrez modified site: 4-hydroxyproline (Pro) 849
Entrez modified site: 4-hydroxyproline (Pro) 855
Entrez modified site: 4-hydroxyproline (Pro) 861
Entrez modified site: 4-hydroxyproline (Pro) 867
Entrez modified site: 4-hydroxyproline (Pro) 888
Entrez modified site: 4-hydroxyproline (Pro) 894
Entrez modified site: 4-hydroxyproline (Pro) 915
Entrez modified site: 4-hydroxyproline (Pro) 945
Entrez modified site: 4-hydroxyproline (Pro) 954
Entrez modified site: 4-hydroxyproline (Pro) 963
Entrez modified site: 4-hydroxyproline (Pro) 966
Entrez modified site: 4-hydroxyproline (Pro) 984
Entrez modified site: 4-hydroxyproline (Pro) 990
Entrez modified site: 4-hydroxyproline (Pro) 1011
Entrez modified site: 4-hydroxyproline (Pro) 1014
Entrez modified site: 4-hydroxyproline (Pro) 1017
Entrez modified site: 4-hydroxyproline (Pro) 1020
Entrez modified site: 3-hydroxyproline (Pro) 53
Entrez modified site: 3-hydroxyproline (Pro) 161
Entrez modified site: 3-hydroxyproline (Pro) 165
Entrez modified site: 3-hydroxyproline (Pro) 416
Entrez modified site: 3-hydroxyproline (Pro) 551
Entrez modified site: 3-hydroxyproline (Pro) 647
Entrez modified site: 3-hydroxyproline (Pro) 773
Entrez modified site: 3-hydroxyproline (Pro) 815
Entrez modified site: 3-hydroxyproline (Pro) 1010
Entrez modified site: 3-hydroxyproline (Pro) 1013
Entrez modified site: 3-hydroxyproline (Pro) 1016
Entrez modified site: 3-hydroxyproline (Pro) 1019
Entrez modified site: 5-hydroxylysine (Lys) 96
Entrez modified site: 5-hydroxylysine (Lys) 108
Entrez modified site: 5-hydroxylysine (Lys) 192
Entrez modified site: 5-hydroxylysine (Lys) 261
Entrez modified site: 5-hydroxylysine (Lys) 279
Entrez modified site: 5-hydroxylysine (Lys) 573
Entrez modified site: 5-hydroxylysine (Lys) 612
Entrez modified site: 5-hydroxylysine (Lys) 657
Entrez modified site: 5-hydroxylysine (Lys) 738
Entrez modified site: 5-hydroxylysine (Lys) 765
Entrez modified site: 5-hydroxylysine (Lys) 810
Entrez modified site: 5-hydroxylysine (Lys) 927
Entrez modified site: 5-hydroxylysine (Lys) 936
Entrez binding site: carbohydrate (Lys) (covale 96
Entrez binding site: carbohydrate (Lys) (covale 108
Entrez binding site: carbohydrate (Lys) (covale 192
Entrez binding site: carbohydrate (Lys) (covale 261
Entrez binding site: carbohydrate (Lys) (covale 279
Entrez binding site: carbohydrate (Lys) (covale 573
Entrez binding site: carbohydrate (Lys) (covale 612
Entrez binding site: carbohydrate (Lys) (covale 657
Entrez binding site: carbohydrate (Lys) (covale 738
Entrez binding site: carbohydrate (Lys) (covale 765
Entrez binding site: carbohydrate (Lys) (covale 810
Entrez binding site: carbohydrate (Lys) (covale 927
Entrez binding site: carbohydrate (Lys) (covale 936
Entrez modified site: 5-hydroxylysine (Lys) 183
Entrez modified site: 5-hydroxylysine (Lys) 342
Entrez modified site: 5-hydroxylysine (Lys) 546
Entrez modified site: 5-hydroxylysine (Lys) 567
Entrez modified site: 5-hydroxylysine (Lys) 939
Entrez modified site: 5-hydroxylysine (Lys) (pa 351
Entrez modified site: 5-hydroxylysine (Lys) (pa 933
__________________
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.17, Sum P(2) = 0.15
Identities = 17/36 (47%), Positives = 17/36 (47%), Frame = -1
Query: 248 NLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAG 144
N PD G P P P PRG TG G DG L G
Sbjct: 116 NQGPDGGPGPAGPSGPIGPRGQTGERGRDGKSGLPG 151
Score = 39 (13.7 bits), Expect = 0.17, Sum P(2) = 0.15
Identities = 10/24 (41%), Positives = 12/24 (50%), Frame = -3
Query: 135 PGDLGPVRH*GRXSRLQFGRRGRP 64
PGD+G H G G+RG P
Sbjct: 285 PGDVGAPGHAGEA-----GKRGSP 303
Score = 34 (12.0 bits), Expect = 0.54, Sum P(2) = 0.42
Identities = 7/11 (63%), Positives = 7/11 (63%), Frame = -3
Query: 150 GWRPLPGDLGP 118
G R LPG GP
Sbjct: 883 GQRGLPGAAGP 893
>gi|7499772|pir||T21314 hypothetical protein F23H12.4 - Caenorhabditis elegans
>gi|3876307|emb|CAA98942.1| (Z74472) predicted using
Genefinder~contains similarity to Pfam domain: PF01391 (Collagen
triple helix repeat (20 copies)), Score=84.3, E-value=8.1e-22, N=2;
PF01484 (Nematode cuticle collagen N-terminal domain), Score=34.2,
E-value=9.9e-07, N=1~cDNA E>
Length = 301
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | || 301
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.18, P = 0.17
Identities = 31/94 (32%), Positives = 36/94 (38%), Frame = +1
Query: 19 PLVTAXEPGKXHHENRSPSASE-L*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRG 195
P A PG E +P+ SE L G D G P P P P+G
Sbjct: 193 PAGEAGAPGPAG-EPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKG 251
Query: 196 AVGESGCLGMQPQSG--GKFRPRLNTGERPIANKY 294
A G G G+ QSG G P GE+ I KY
Sbjct: 252 APGPDGPPGVDGQSGPPGPPGPAGTPGEKGICPKY 286
>gi|476420|pir||CGBO1S collagen alpha 1(I) chain - bovine (tentative sequence)
(fragments)
Length = 779
Frame 1 hits (HSPs): _____
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): ___
Annotated Domains: _
__________________________________________________
Database sequence: | | | | | | | 779
0 150 300 450 600 750
__________________
Annotated Domains:
Entrez modified site: pyrrolidone carboxylic ac 1
__________________
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.81, P = 0.56
Identities = 23/65 (35%), Positives = 28/65 (43%), Frame = +1
Query: 31 AXEPGKXHHENRSPSA--SEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E +P A S G + DR + GAP AP P PV P G G
Sbjct: 568 AGPPGESGREG-APGAEGSPGRDGSPGAKGDRGETGPAGAPGPPGAPGAPGPVGPAGKSG 626
Query: 205 ESGCLG 222
+ G G
Sbjct: 627 DRGETG 632
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.19, Sum P(2) = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%), Frame = -1
Query: 251 RNLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAGAP 138
R P + G + P P PRGA G+ G+DGA AGAP
Sbjct: 244 RGFPGERGV--EGPPGPAGPRGANGAPGNDGAKGDAGAP 280
Score = 35 (12.3 bits), Expect = 0.19, Sum P(2) = 0.17
Identities = 11/29 (37%), Positives = 12/29 (41%), Frame = -3
Query: 150 GWRPLPGDLGPVRH*GRXSRLQFGRRGRP 64
G LPG +GP GR G G P
Sbjct: 716 GLNGLPGPIGPPGPRGRTG--DAGPAGPP 742
>gi|7441988|pir||T16984 transcription factor homolog BTF3 - curled-leaved
tobacco >gi|1666173|emb|CAA70323.1| (Y09106) transcription factor
[Nicotiana plumbaginifolia]
Length = 165
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.20, P = 0.19
Identities = 21/65 (32%), Positives = 30/65 (46%), Frame = +3
Query: 102 VLSGGPGPSPLEGGASQGESPVVPGPCRTTRRCRRVGLFGNAAPIGR*IPSKAKYWRETD 281
V+SG P L+G +S SPV P + R R + + AP P A +E D
Sbjct: 83 VVSGSPQTKKLQGYSSSNYSPVGPDNLESLREASRA-VPESRAPSANGAPEGAPALQEDD 141
Query: 282 SEQVP 296
++VP
Sbjct: 142 DDEVP 146
>gi|7516580|pir||C72637 hypothetical protein APE1554 - Aeropyrum pernix (strain
K1) >gi|5105239|dbj|BAA80553.1| (AP000061) 104aa long hypothetical
protein [Aeropyrum pernix]
Length = 104
Frame -2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | | 104
0 20 40 60 80 100
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.22, P = 0.20
Identities = 21/67 (31%), Positives = 34/67 (50%), Frame = -2
Query: 220 PNNPTRRQRLVVRQGPGTTGLS-PWLAPPSRGLGPGPPLR---------TXLQTTIRTPR 71
P + RR+R +R G G P++ P G GPGPP R + L++ ++P
Sbjct: 19 PLHRLRRERRGLRAGAPWGGTPRPFVLRPDTGGGPGPPPRGGLRLPGHVSLLRSRSQSPP 78
Query: 70 ATDFHGG 50
+ ++HGG
Sbjct: 79 SHEYHGG 85
>gi|71405|pir||CGCH1S collagen alpha 1(I) chain - chicken (tentative sequence)
(fragments)
Length = 1042
Frame 1 hits (HSPs): ____
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): __
Annotated Domains: _
__________________________________________________
Database sequence: | | | | | | | | 1042
0 150 300 450 600 750 900
__________________
Annotated Domains:
Entrez modified site: pyrrolidone carboxylic ac 1
__________________
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 2.4, P = 0.91
Identities = 23/71 (32%), Positives = 28/71 (39%), Frame = +1
Query: 31 AXEPGKXHHENRSPSASEL*S--GXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E +P A G A DR + G P AP P PV P G G
Sbjct: 844 AGPPGEAGREG-APGAEGAPGRDGAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNG 902
Query: 205 ESGCLGMQPQSG 240
+ G G +G
Sbjct: 903 DRGETGPAGPAG 914
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.28, Sum P(2) = 0.24
Identities = 18/38 (47%), Positives = 22/38 (57%), Frame = -1
Query: 251 RNLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAGAP 138
R P + G + P P PRGA G+ G+DGA AGAP
Sbjct: 517 RGFPGERGV--QGPPGPQGPRGANGAPGNDGAKGDAGAP 553
Score = 37 (13.0 bits), Expect = 0.28, Sum P(2) = 0.24
Identities = 11/30 (36%), Positives = 13/30 (43%), Frame = -3
Query: 150 GWRPLPGDLGPVRH*GRXSRL-QFGRRGRP 64
G LPG +GP GR + G G P
Sbjct: 992 GLNGLPGPIGPPGPRGRTGEVGPVGPPGPP 1021
>gi|115397|sp|P08124|CC01_CAEEL CUTICLE COLLAGEN 1 >gi|84425|pir||A31219
collagen 1 - Caenorhabditis elegans >gi|6678|emb|CAA23463.1|
(V00147) unnamed protein product [Caenorhabditis elegans]
>gi|156258|gb|AAA27988.1| (J01047) collagen [Caenorhabditis
elegans]
Length = 296
Frame 1 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 296
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 103..269
Entrez Domain: TRIPLE-HELICAL REGION. 100..129
Entrez Domain: TRIPLE-HELICAL REGION. 148..174
Entrez Domain: TRIPLE-HELICAL REGION. 178..204
Entrez Domain: TRIPLE-HELICAL REGION. 213..278
PFAM Collagen: Collagen triple helix repeat ( 148..207
PFAM Collagen: Collagen triple helix repeat ( 213..272
PRODOM PD004226: 6..32
PRODOM PD000926: 34..97
PRODOM PD000540: H1(18) O76786(11) TONB(10) 100..232
PRODOM PD002391: 276..295
__________________
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.29, P = 0.25
Identities = 31/94 (32%), Positives = 35/94 (37%), Frame = +1
Query: 19 PLVTAXEPGKXHHENRSPSASE-L*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRG 195
P A PG E +P+ SE L G D G P P P P+G
Sbjct: 188 PAGEAGAPGPAG-EPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKG 246
Query: 196 AVGESGCLGMQPQSG--GKFRPRLNTGERPIANKY 294
A G G G QSG G P GE+ I KY
Sbjct: 247 APGPDGPPGADGQSGPPGPPGPAGTPGEKGICPKY 281
>gi|180882|gb|AAA52053.1| (M21353) alpha-2 type I collagen [Homo sapiens]
Length = 54
Frame 3 hits (HSPs): __________________
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 54
0 20 40
Plus Strand HSPs:
Score = 42 (14.8 bits), Expect = 0.32, Sum P(2) = 0.27
Identities = 8/21 (38%), Positives = 12/21 (57%), Frame = +3
Query: 111 GGPGPSPLEGGASQGESPVVP 173
G PGP ++GG + + P P
Sbjct: 13 GPPGPQGVQGGKGE-QGPAGP 32
Score = 38 (13.4 bits), Expect = 0.32, Sum P(2) = 0.27
Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = +1
Query: 172 PDPVAPRGAVGESG 213
P P P G VG+ G
Sbjct: 39 PGPSGPAGEVGKPG 52
>gi|5732934|gb|AAD49346.1| (AF169346) pro-alpha-1 type 1 collagen [Cavia
porcellus]
Length = 230
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 230
0 50 100 150 200
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.32, P = 0.27
Identities = 24/71 (33%), Positives = 28/71 (39%), Frame = +1
Query: 31 AXEPGKXHHENRSPSA--SEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E SP A S G DR + G P AP P PV P G G
Sbjct: 137 AGPPGESGREG-SPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNG 195
Query: 205 ESGCLGMQPQSG 240
+ G G +G
Sbjct: 196 DRGETGPAGPAG 207
>gi|115411|sp|P17657|CCDC_CAEEL CUTICLE COLLAGEN DPY-13 >gi|84436|pir||A31921
collagen dpy-13 precursor - Caenorhabditis elegans
>gi|156270|gb|AAA27994.1| (M23559) collagen [Caenorhabditis
elegans] >gi|1123099|gb|AAA83499.1| (U42437) coded for by C.
elegans cDNA yk100c3.5; coded for by C. elegans cDNA yk58f10.5;
coded for by C. elegans cDNA yk66g4.5; coded for by C. elegans cDNA
cm9g8; coded for by C. elegans cDNA yk66g4.3; coded for by C.
elegans cDNA yk58f10.3; coded for>
Length = 302
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 109..275
Entrez Domain: TRIPLE-HELICAL REGION. 106..135
Entrez Domain: TRIPLE-HELICAL REGION. 154..210
Entrez Domain: TRIPLE-HELICAL REGION. 219..278
PFAM Collagen: Collagen triple helix repeat ( 154..213
PFAM Collagen: Collagen triple helix repeat ( 219..278
PRODOM PD004226: 6..32
PRODOM PD000926: 34..104
PRODOM PD014680: 119..143
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 174..204
PRODOM PD196428: CCDC_CAEEL 206..280
PRODOM PD002391: 282..301
__________________
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.35, Sum P(2) = 0.30
Identities = 19/52 (36%), Positives = 20/52 (38%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
G P P P P P G G+ G G P G P GER I KY
Sbjct: 237 GQPGNDGTPGQPGPKGPPGPDGKPGADG-NPGQPGPVGPPGTPGERGICPKY 287
Score = 38 (13.4 bits), Expect = 0.35, Sum P(2) = 0.30
Identities = 9/18 (50%), Positives = 10/18 (55%), Frame = +2
Query: 104 PQWRTG-PKSPGRGRQPG 154
PQ G P PGR +PG
Sbjct: 107 PQGAPGAPGKPGRPGKPG 124
>gi|7504118|pir||T22607 hypothetical protein F54B11.1 - Caenorhabditis elegans
>gi|3877568|emb|CAA94141.1| (Z70208) contains similarity to Pfam
domain: PF01391 (Collagen triple helix repeat (20 copies)),
Score=25.2, E-value=5e-05, N=2; PF01484 (Nematode cuticle collagen
N-terminal domain), Score=-2.7, E-value=0.59, N=1 [Caenorhabditis
elegans]
Length = 339
Frame 3 hits (HSPs): _______ ____
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 339
0 150 300
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 17/44 (38%), Positives = 20/44 (45%), Frame = +1
Query: 163 PSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKY 294
P P P P G G G G+ QSGG R GE+ + KY
Sbjct: 284 PGLPGPPGPPGRPGSDGNPGVPGQSGGSRRH----GEKGVCPKY 323
Score = 44 (15.5 bits), Expect = 0.42, Sum P(2) = 0.34
Identities = 12/25 (48%), Positives = 15/25 (60%), Frame = +3
Query: 105 LSGGPG-PSPLEGGASQGESPVVPGP 179
L+G PG P + G Q S V+PGP
Sbjct: 198 LNGQPGLPGGM-GPPGQSMSNVLPGP 222
Score = 37 (13.0 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = +3
Query: 105 LSGGPGPSPLEGGASQGESPVVPGP 179
L G PG + GA+ P +PGP
Sbjct: 266 LMGPPGLDA-QNGANGFGPPGLPGP 289
Score = 33 (11.6 bits), Expect = 5.3, Sum P(2) = 0.99
Identities = 8/22 (36%), Positives = 8/22 (36%), Frame = +3
Query: 111 GGPGPSPLEGGASQGESPVVPG 176
G PGP G P PG
Sbjct: 224 GPPGPPGQPGNHGLAGQPGSPG 245
>gi|83714|pir||JN0254 qutH protein - Emericella nidulans
Length = 378
Frame 3 hits (HSPs): ____________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | 378
0 150 300
__________________
Annotated Domains:
Entrez region: zinc binding 181..213
__________________
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.42, P = 0.34
Identities = 25/83 (30%), Positives = 37/83 (44%), Frame = +3
Query: 18 SLSNGXRTGKXPP*KSVALGVRIV--VWRXVLSGGPGPSPLEGGASQGESPVVP-GPCRT 188
S S RT PP K+V L +R + L PSPL GE+P +P P ++
Sbjct: 209 SCSACARTRNIPPRKAVLLTLRFASGIVGTFLYCDATPSPLNFETGTGENPTIPPAPSKS 268
Query: 189 TRRCRRVGLFGNAAPIGR*IPSKAKY 266
C R+ G A + +P ++
Sbjct: 269 ASECYRI--LGTRASLS--VPDMTRW 290
>gi|192264|gb|AAA37334.1| (M17491) procollagen type I alpha chain [Mus
musculus]
Length = 396
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 396
0 150 300
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.45, P = 0.36
Identities = 24/71 (33%), Positives = 29/71 (40%), Frame = +1
Query: 31 AXEPGKXHHENRSPSA--SEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E SP A S G + DR + G P AP P PV P G G
Sbjct: 261 AGPPGESGREG-SPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNG 319
Query: 205 ESGCLGMQPQSG 240
+ G G +G
Sbjct: 320 DRGETGPAGPAG 331
>gi|3288493|emb|CAA75878.1| (Y15918) COL1A1 and PDGFB fusion transcript [Homo
sapiens]
Length = 173
Frame -1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.51, P = 0.40
Identities = 18/38 (47%), Positives = 22/38 (57%), Frame = -1
Query: 251 RNLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAGAP 138
R P + G + P P PRGA G+ G+DGA AGAP
Sbjct: 81 RGFPGERGV--QGPPGPAGPRGANGAPGNDGAKGDAGAP 117
>gi|10440430|dbj|BAB15748.1| (AK024458) FLJ00050 protein [Homo sapiens]
Length = 270
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 270
0 50 100 150 200 250
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.54, P = 0.42
Identities = 28/80 (35%), Positives = 35/80 (43%), Frame = -2
Query: 262 LALDGIYRPIGAAFPNNPTRRQRLVVRQGPGTTGLSPWLAP-PSRGLGPGPPLRTXLQTT 86
LAL + P+ P + LV+ Q PG TGLSPW P PS G P Q
Sbjct: 165 LALPSPPAQLQGLMPSAPQDKS-LVLPQ-PGLTGLSPWRRPRPSST--KGLPQNPGQQAA 220
Query: 85 IRTPRATDFHGGXFPVRSPLL 23
+ + FPVRS L+
Sbjct: 221 LWVAQRIKMWPPCFPVRSGLV 241
>gi|115268|sp|P02457|CA11_CHICK COLLAGEN ALPHA 1(I) CHAIN PRECURSOR
Length = 1453
Frame 1 hits (HSPs): ___
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 1453
0 500 1000
__________________
Annotated Domains:
BLOCKS BL01208C: VWFC domain proteins. 58..68
BLOCKS BL01208B: VWFC domain proteins. 74..88
BLOCKS BL01208A: VWFC domain proteins. 1385..1391
DOMO DM00551: VONWILLEBRANDFACTORTYPECREPEAT 1..97
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 98..141
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 142..336
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 338..478
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 480..668
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 670..849
DOMO DM00019: FIBRILLARCOLLAGENCARBOXYL-TERMI 915..1139
DOMO DM01418: FIBRILLARCOLLAGENCARBOXYL-TERMI 1273..1307
DOMO DM00860: FIBRILLARCOLLAGENCARBOXYL-TERMI 1309..1452
Entrez Domain: VWFC. 31..89
Entrez pyrrolidone-carboxylic-acid site 152
Entrez hydroxylation site: (POTENTIAL). 254
Entrez hydroxylation site: (POTENTIAL). 851
Entrez hydroxylation site: (POTENTIAL). 1081
Entrez hydroxylation site: (POTENTIAL). 1097
Entrez hydroxylation site: (ONLY 3-HYDROXYPRO A 1153
PFAM vwc: von Willebrand factor type C domain 33..88
PFAM Collagen: Collagen triple helix repeat ( 100..158
PFAM Collagen: Collagen triple helix repeat ( 166..224
PFAM Collagen: Collagen triple helix repeat ( 225..284
PFAM Collagen: Collagen triple helix repeat ( 285..344
PFAM Collagen: Collagen triple helix repeat ( 345..404
PFAM Collagen: Collagen triple helix repeat ( 405..464
PFAM Collagen: Collagen triple helix repeat ( 465..524
PFAM Collagen: Collagen triple helix repeat ( 525..584
PFAM Collagen: Collagen triple helix repeat ( 585..644
PFAM Collagen: Collagen triple helix repeat ( 645..704
PFAM Collagen: Collagen triple helix repeat ( 705..764
PFAM Collagen: Collagen triple helix repeat ( 768..827
PFAM Collagen: Collagen triple helix repeat ( 828..887
PFAM Collagen: Collagen triple helix repeat ( 888..947
PFAM Collagen: Collagen triple helix repeat ( 948..1007
PFAM Collagen: Collagen triple helix repeat ( 1008..1067
PFAM Collagen: Collagen triple helix repeat ( 1068..1127
PFAM Collagen: Collagen triple helix repeat ( 1128..1187
PFAM COLFI: Fibrillar collagen C-terminal dom 1234..1452
PRODOM PD162416: CA11_CHICK 1..24
PRODOM PD000826: NEL(12) Q17429(6) NOV(5) 26..104
PRODOM PD058205: CA11_CHICK 106..124
PRODOM PD026094: CA11_CHICK 148..175
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 177..207
PRODOM PD018836: CA11(3) 241..267
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 269..303
PRODOM PD000540: H1(18) O76786(11) TONB(10) 306..472
PRODOM PD000540: H1(18) O76786(11) TONB(10) 491..663
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 683..713
PRODOM PD000540: H1(18) O76786(11) TONB(10) 735..852
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 856..888
PRODOM PD187138: CA11(3) O76045(1) 929..960
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 962..992
PRODOM PD002493: CA11(3) CA12(2) 1000..1027
PRODOM PD007903: 1079..1102
PRODOM PD000007: CA14(90) CA24(88) CA13(40) 1104..1133
PRODOM PD038429: CA11(3) O76045(1) Q9YIB4(1) 1185..1232
PRODOM PD002078: CA11(3) CA12(2) CA13(2) 1234..1451
__________________
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 3.4, P = 0.97
Identities = 23/71 (32%), Positives = 28/71 (39%), Frame = +1
Query: 31 AXEPGKXHHENRSPSASEL*S--GXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E +P A G A DR + G P AP P PV P G G
Sbjct: 995 AGPPGEAGREG-APGAEGAPGRDGAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNG 1053
Query: 205 ESGCLGMQPQSG 240
+ G G +G
Sbjct: 1054 DRGETGPAGPAG 1065
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.55, Sum P(2) = 0.42
Identities = 18/38 (47%), Positives = 22/38 (57%), Frame = -1
Query: 251 RNLPPDWGCIPKQPDSPTAPRGATGS-GHDGALTLAGAP 138
R P + G + P P PRGA G+ G+DGA AGAP
Sbjct: 668 RGFPGERGV--QGPPGPQGPRGANGAPGNDGAKGDAGAP 704
Score = 37 (13.0 bits), Expect = 0.55, Sum P(2) = 0.42
Identities = 11/30 (36%), Positives = 13/30 (43%), Frame = -3
Query: 150 GWRPLPGDLGPVRH*GRXSRL-QFGRRGRP 64
G LPG +GP GR + G G P
Sbjct: 1143 GLNGLPGPIGPPGPRGRTGEVGPVGPPGPP 1172
>gi|2136732|pir||I45876 collagen alpha 1(II) chain - bovine (fragment)
>gi|457187|gb|AAA30436.1| (L28918) cyanogen bromide [Bos taurus]
Length = 93
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.59, P = 0.45
Identities = 15/34 (44%), Positives = 18/34 (52%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSG 240
GAP AP P P P G G +G LG + Q+G
Sbjct: 59 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTG 92
>gi|159960|gb|AAA29439.1| (M24558) collagen-like protein [Paracentrotus
lividus]
Length = 290
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 290
0 50 100 150 200 250
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.61, P = 0.45
Identities = 23/72 (31%), Positives = 28/72 (38%), Frame = +1
Query: 40 PGKXHHEN-RSPSASEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVGESGC 216
PG R P S +G V +R + G P AP P P RG GE G
Sbjct: 108 PGSQGESGERGPRGSVGPAGPPGGVGERGPM---GPPGMSGAPGAPGPKGDRGLPGERGA 164
Query: 217 LGMQPQSGGKFRP 255
G + +G RP
Sbjct: 165 NGPKGSAGESGRP 177
>gi|7510834|pir||T28999 hypothetical protein ZC513.8 - Caenorhabditis elegans
>gi|1255433|gb|AAC48270.1| (U53155) Similar to cuticular collagen;
coded for by C. elegans cDNA yk58e6.3; coded for by C. elegans cDNA
yk71h12.3; coded for by C. elegans cDNA yk100d10.3; coded for by C.
elegans cDNA yk100d4.3; coded for by C. elegans cDNA yk123g7.3;
coded for by>
Length = 303
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | || 303
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.65, P = 0.48
Identities = 27/90 (30%), Positives = 37/90 (41%), Frame = +1
Query: 31 AXEPGKXHHENRSPSASE-L*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVGE 207
A +PG + +P+ SE L G D G P P P P+G+ G
Sbjct: 199 AGQPGP-QGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSPGP 257
Query: 208 SGCLGMQPQSGGKFRP-RLNT-GERPIANKY 294
G G+ Q+G P + T GE+ I KY
Sbjct: 258 DGPAGVDGQAGPPGPPGQAGTPGEKGICPKY 288
>gi|930045|emb|CAA33387.1| (X15332) alpha-1 (III) collagen [Homo sapiens]
Length = 1078
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1078
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.70, Sum P(2) = 0.50
Identities = 23/55 (41%), Positives = 24/55 (43%), Frame = +1
Query: 130 PWKGAPARVR-APSCPDPVAPRGAVGESGCLGMQPQSG-----GKFRPRLNTGER 276
P PA + A P P PRG VG SG G SG G PR N GER
Sbjct: 971 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 1025
Score = 41 (14.4 bits), Expect = 0.70, Sum P(2) = 0.50
Identities = 13/43 (30%), Positives = 17/43 (39%), Frame = +3
Query: 30 GXRTGKXPP*KSVALGVRIVVWRXVLSGGPG-PSPLEGGASQG 155
G + PP LG+ + L+G PG P P QG
Sbjct: 786 GSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 828
Score = 35 (12.3 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 8/19 (42%), Positives = 9/19 (47%), Frame = +2
Query: 80 PNCSLEXRPQWRTGPKSPG 136
P + E PQ GP PG
Sbjct: 461 PGKNGEYGPQGPPGPTGPG 479
>gi|553198|gb|AAA51816.1| (M31731) bcl-3 protein [Homo sapiens]
Length = 77
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 0.75, P = 0.53
Identities = 18/41 (43%), Positives = 24/41 (58%), Frame = +1
Query: 121 AQVPWKGAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGG 243
A +P + P +RAPS P+P APRGA G + + P GG
Sbjct: 20 AALPLRKRP--LRAPS-PEPAAPRGAAGL--VVPLDPLRGG 55
>gi|5921192|sp|P02467|CA21_CHICK COLLAGEN ALPHA 2(I) CHAIN PRECURSOR
Length = 1362
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): ___
Annotated Domains: _ _
__________________________________________________
Database sequence: | | | | 1362
0 500 1000
__________________
Annotated Domains:
Entrez modified site: CONVERTED TO AN ALDEHYDE 83
Entrez hydroxylation site 439
Entrez hydroxylation site 442
__________________
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 0.76, Sum P(2) = 0.53
Identities = 18/47 (38%), Positives = 20/47 (42%), Frame = +1
Query: 136 KGAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRL--NTG 270
KG P V P P P G GE G G+ G K P L +TG
Sbjct: 619 KGEPGNVGPAGAPGPAGPGGIPGERGVAGVPGGKGEKGAPGLRGDTG 665
Score = 36 (12.7 bits), Expect = 0.76, Sum P(2) = 0.53
Identities = 10/31 (32%), Positives = 13/31 (41%), Frame = +2
Query: 65 GRPRRPNCSLEXRPQWRTGPKSP-GRGRQPG 154
G P P + PQ GP P G+ + G
Sbjct: 114 GVPGEPGEPGQTGPQGPRGPPGPPGKAGEDG 144
>gi|192262|gb|AAA37333.1| (M14423) pro-alpha-1 type I collagen [Mus musculus]
>gi|224870|prf||1202297A collagen alpha1(I),pro [Mus musculus]
Length = 611
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | || 611
0 150 300 450 600
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.78, P = 0.54
Identities = 24/71 (33%), Positives = 29/71 (40%), Frame = +1
Query: 31 AXEPGKXHHENRSPSA--SEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E SP A S G + DR + G P AP P PV P G G
Sbjct: 478 AGPPGESGREG-SPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNG 536
Query: 205 ESGCLGMQPQSG 240
+ G G +G
Sbjct: 537 DRGETGPAGPAG 548
>gi|8922952 ref|NP_060836.1| hypothetical protein FLJ11230 [Homo sapiens]
>gi|7023765|dbj|BAA92080.1| (AK002092) unnamed protein product
[Homo sapiens]
Length = 217
Frame -1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.80, P = 0.55
Identities = 14/48 (29%), Positives = 22/48 (45%), Frame = -1
Query: 236 DWGCIPKQPDSPTAPRGATGSGHDGALTLAGAPFQGTWARSATEDASP 93
D G +P+ P+GA SG G ++ + + G W ED +P
Sbjct: 7 DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54
>gi|2143752|pir||I60384 gene T1 protein - rat (fragment)
>gi|531376|emb|CAA56213.1| (X79816) T1 [Rattus norvegicus]
Length = 53
Frame 2 hits (HSPs): _________________
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 53
0 20 40
Plus Strand HSPs:
Score = 41 (14.4 bits), Expect = 0.85, Sum P(2) = 0.57
Identities = 9/18 (50%), Positives = 11/18 (61%), Frame = +2
Query: 104 PQWRTGPKSP-GRGRQPG 154
PQ TGP P G+ +PG
Sbjct: 5 PQGATGPLGPKGQTGEPG 22
Score = 35 (12.3 bits), Expect = 0.85, Sum P(2) = 0.57
Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = +1
Query: 178 PVAPRGAVGESG 213
P P+GA G +G
Sbjct: 38 PAGPQGAPGPAG 49
>gi|2119160|pir||I50629 collagen - chicken (fragment) >gi|63308|emb|CAA23695.1|
(V00401) collagen [Gallus gallus]
Length = 473
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.93, P = 0.61
Identities = 23/71 (32%), Positives = 28/71 (39%), Frame = +1
Query: 31 AXEPGKXHHENRSPSASEL*S--GXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVG 204
A PG+ E +P A G A DR + G P AP P PV P G G
Sbjct: 15 AGPPGEAGREG-APGAEGAPGRDGAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNG 73
Query: 205 ESGCLGMQPQSG 240
+ G G +G
Sbjct: 74 DRGETGPAGPAG 85
>gi|7508879|pir||T28770 hypothetical protein W03D2.1 - Caenorhabditis elegans
>gi|1947160|gb|AAC48255.1| (AF000298) weak similarity to collagens;
glycine- and proline-rich [Caenorhabditis elegans]
Length = 539
Frame 3 hits (HSPs): __ __
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 539
0 150 300 450
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.99, Sum P(2) = 0.63
Identities = 21/50 (42%), Positives = 25/50 (50%), Frame = +1
Query: 130 PWKGAPARVRAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERP 279
P G+P RA S P P PRG+ +G L PQ+GG P TG P
Sbjct: 305 PAGGSPPPPRAGSPPPPPPPRGSP-PTGSLP-PPQAGGS-PPPAGTGSPP 351
Score = 33 (11.6 bits), Expect = 0.99, Sum P(2) = 0.63
Identities = 6/9 (66%), Positives = 6/9 (66%), Frame = +3
Query: 30 GXRTGKXPP 56
G RTG PP
Sbjct: 86 GGRTGSPPP 94
Score = 33 (11.6 bits), Expect = 0.99, Sum P(2) = 0.63
Identities = 6/9 (66%), Positives = 6/9 (66%), Frame = +3
Query: 30 GXRTGKXPP 56
G RTG PP
Sbjct: 144 GGRTGSPPP 152
>gi|11437170 ref|XP_003597.1| hypothetical protein FLJ11230 [Homo sapiens]
Length = 248
Frame -1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.0, P = 0.63
Identities = 14/48 (29%), Positives = 22/48 (45%), Frame = -1
Query: 236 DWGCIPKQPDSPTAPRGATGSGHDGALTLAGAPFQGTWARSATEDASP 93
D G +P+ P+GA SG G ++ + + G W ED +P
Sbjct: 38 DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 85
>gi|1340174|emb|CAA25821.1| (X01655) type III procollagen (aa 892-1023) [Homo
sapiens]
Length = 132
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.1, P = 0.66
Identities = 23/55 (41%), Positives = 24/55 (43%), Frame = +1
Query: 130 PWKGAPARVR-APSCPDPVAPRGAVGESGCLGMQPQSG-----GKFRPRLNTGER 276
P PA + A P P PRG VG SG G SG G PR N GER
Sbjct: 54 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 108
>gi|71415|pir||CGRT2S collagen alpha 2(I) chain - rat (tentative sequence)
(fragments)
Length = 184
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _______
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
__________________
Annotated Domains:
Entrez modified site: blocked amino end (Glx) ( 1
Entrez modified site: allysine (Lys) 5
__________________
Plus Strand HSPs:
Score = 54 (19.0 bits), Expect = 1.2, Sum P(2) = 0.70
Identities = 10/23 (43%), Positives = 12/23 (52%), Frame = +3
Query: 111 GGPGPSPLEGGASQGESPVVPGP 179
G PGP +G A + P PGP
Sbjct: 27 GAPGPQGFQGPAGEPGEPGQPGP 49
Score = 54 (19.0 bits), Expect = 1.2, Sum P(2) = 0.70
Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = +1
Query: 172 PDPVAPRGAVGESGCLGMQPQSG 240
P P+ P G G++G +G P +G
Sbjct: 120 PGPIGPAGPRGZAGAIGF-PMTG 141
>gi|7494559|pir||T28887 collagen dpy-10 - Caenorhabditis elegans
>gi|1213522|gb|AAA91236.1| (U50191) C. elegans collagen dpy-10 gene
(Levy, A.D., Yang, J. and Kramer, J.M. Mol. Biol Cell 4, 803-17,
1993) [Caenorhabditis elegans]
Length = 284
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 284
0 50 100 150 200 250
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.2, P = 0.71
Identities = 18/56 (32%), Positives = 23/56 (41%), Frame = +1
Query: 139 GAPARVRAPSC--PDPVAPRGAVGESGCLGMQPQSGGKFRPRLNTGERPIANKYRE 300
GAP P C P P PRG+ G G G+ +G P + N+ RE
Sbjct: 93 GAPLETECPGCCIPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVRE 148
>gi|4502951 ref|NP_000081.1| collagen, type III, alpha 1; Collagen III, alpha-1
polypeptide [Homo sapiens] >gi|115306|sp|P02461|CA13_HUMAN COLLAGEN
ALPHA 1(III) CHAIN PRECURSOR >gi|30058|emb|CAA32583.1| (X14420)
prepro-alpha-1 type 3 collagen [Homo sapiens]
Length = 1466
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 1466
0 500 1000
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.3, Sum P(2) = 0.73
Identities = 23/55 (41%), Positives = 24/55 (43%), Frame = +1
Query: 130 PWKGAPARVR-APSCPDPVAPRGAVGESGCLGMQPQSG-----GKFRPRLNTGER 276
P PA + A P P PRG VG SG G SG G PR N GER
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 1172
Score = 41 (14.4 bits), Expect = 1.3, Sum P(2) = 0.73
Identities = 13/43 (30%), Positives = 17/43 (39%), Frame = +3
Query: 30 GXRTGKXPP*KSVALGVRIVVWRXVLSGGPG-PSPLEGGASQG 155
G + PP LG+ + L+G PG P P QG
Sbjct: 933 GSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Score = 36 (12.7 bits), Expect = 8.9, Sum P(2) = 1.0
Identities = 8/19 (42%), Positives = 9/19 (47%), Frame = +2
Query: 80 PNCSLEXRPQWRTGPKSPG 136
P + E PQ GP PG
Sbjct: 608 PGKNGETGPQGPPGPTGPG 626
>gi|1070603|pir||CGHU7L collagen alpha 1(III) chain precursor - human
Length = 1466
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 1466
0 500 1000
__________________
Annotated Domains:
Entrez domain: signal sequence 1..23
Entrez domain: amino-terminal propeptide 24..153
Entrez domain: von Willebrand factor type C rep 31..91
Entrez region: amino-terminal nonhelical telope 154..167
Entrez region: helical 168..1196
Entrez region: cell attachment (R-G-D) motif 1091..1093
Entrez region: carboxyl-terminal nonhelical tel 1197..1221
Entrez domain: carboxyl-terminal propeptide 1222..1466
Entrez domain: fibrillar collagen carboxyl-term 1238..1466
Entrez modified site: pyrrolidone carboxylic ac 24
Entrez cleavage site: Pro-Gln (procollagen N-en 153..154
Entrez modified site: pyrrolidone carboxylic ac 154
Entrez modified site: allysine (Lys) 161
Entrez modified site: allysine (Lys) 1212
Entrez modified site: 5-hydroxylysine (Lys) 263
Entrez modified site: 5-hydroxylysine (Lys) 284
Entrez modified site: 5-hydroxylysine (Lys) 860
Entrez modified site: 5-hydroxylysine (Lys) 977
Entrez modified site: 5-hydroxylysine (Lys) 1106
Entrez binding site: carbohydrate (Lys) (covale 263
Entrez modified site: 5-hydroxylysine (Lys) (pa 584
Entrez modified site: 5-hydroxylysine (Lys) (pa 1094
Entrez cleavage site: Gly-Ile (collagenase) 948..949
Entrez binding site: carbohydrate (Lys) (covale 1106
Entrez modified site: 3-hydroxyproline (Pro) 1162
Entrez cleavage site: Gly-Asp (procollagen C-en 1221..1222
Entrez binding site: carbohydrate (Asn) (covale 1367
PROSITE GRAM_POS_ANCHORING: Gram-positive cocci 643..648
__________________
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.3, Sum P(2) = 0.73
Identities = 23/55 (41%), Positives = 24/55 (43%), Frame = +1
Query: 130 PWKGAPARVR-APSCPDPVAPRGAVGESGCLGMQPQSG-----GKFRPRLNTGER 276
P PA + A P P PRG VG SG G SG G PR N GER
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 1172
Score = 41 (14.4 bits), Expect = 1.3, Sum P(2) = 0.73
Identities = 13/43 (30%), Positives = 17/43 (39%), Frame = +3
Query: 30 GXRTGKXPP*KSVALGVRIVVWRXVLSGGPG-PSPLEGGASQG 155
G + PP LG+ + L+G PG P P QG
Sbjct: 933 GSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Score = 36 (12.7 bits), Expect = 8.9, Sum P(2) = 1.0
Identities = 8/19 (42%), Positives = 9/19 (47%), Frame = +2
Query: 80 PNCSLEXRPQWRTGPKSPG 136
P + E PQ GP PG
Sbjct: 608 PGKNGETGPQGPPGPTGPG 626
>gi|3171998|emb|CAA06510.1| (AJ005395) collagen alpha 1 (III) [Rattus
norvegicus]
Length = 564
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 564
0 150 300 450
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 1.5, P = 0.77
Identities = 22/71 (30%), Positives = 26/71 (36%), Frame = +1
Query: 28 TAXEPGKXHHENRSPSASEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVGE 207
TA EPG+ + G DR + GAP P P PV P G G+
Sbjct: 106 TAGEPGRDGNPGSDGQPGR--DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKNGD 163
Query: 208 SGCLGMQPQSG 240
G G SG
Sbjct: 164 RGETGPAGPSG 174
>gi|1814029|gb|AAB41793.1| (U84501) cuticle collagen [Caenorhabditis briggsae]
Length = 316
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.5, Sum P(2) = 0.79
Identities = 16/39 (41%), Positives = 19/39 (48%), Frame = +1
Query: 139 GAPARV-RAPSCPDPVAPRGAVGESGCLGMQPQSGGKFRP 255
GAP +V P P P P G G +G G QP G +P
Sbjct: 230 GAPGQVVDVPGTPGPAGPPGPPGPAGAPG-QPGQAGSSQP 268
Score = 35 (12.3 bits), Expect = 1.5, Sum P(2) = 0.79
Identities = 8/16 (50%), Positives = 9/16 (56%), Frame = +3
Query: 105 LSGGPGPSPLEGGASQ 152
L G PGP+ G A Q
Sbjct: 204 LPGPPGPAGPPGPAGQ 219
>gi|258774|gb|AAB23914.1| type II collagen alpha 1 chain, COL2A1 [human,
Peptide Partial Mutant, 346 aa]
Length = 346
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 346
0 150 300
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.7, P = 0.81
Identities = 20/66 (30%), Positives = 23/66 (34%), Frame = +1
Query: 31 AXEPGKXHHENRSPSASEL*SGXASSVADRAQVPWKGAPARVRAPSCPDPVAPRGAVGES 210
A EPG+ G A DR + GAP P P P P G G+
Sbjct: 280 AGEPGRQGSPGADGPPGR--DGAAEVKGDRGETGAVGAPGTPGPPGSPGPAGPTGKQGDR 337
Query: 211 GCLGMQ 228
G G Q
Sbjct: 338 GEAGAQ 343
>gi|2388676|gb|AAB80719.1| (AF015539) precollagen P [Mytilus edulis]
Length = 902
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | || 902
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.7, Sum P(2) = 0.81
Identities = 17/44 (38%), Positives = 19/44 (43%), Frame = +1
Query: 139 GAPARVRAPSCPDPVAPRGAVGESGCLGM---QPQSGGKFRPRL 261
G P AP P PRG +G SG G Q GG+ P L
Sbjct: 420 GGPGDKGAPGTPGGTGPRGPIGPSGPSGAPGDQGPQGGRGTPGL 463
Score = 51 (18.0 bits), Expect = 1.7, Sum P(2) = 0.81
Identities = 15/41 (36%), Positives = 16/41 (39%), Frame = +2
Query: 32 RXNREXPTMKIGRPRRPNCSLEXRPQWRTGPKSPGRGRQPG 154
R P + G P RP S RP P PGR PG
Sbjct: 262 RLGNPGPPGQPGNPGRPGSS--GRPGGSGQPGGPGRPGTPG 300
Score = 45 (15.8 bits), Expect = 6.7, Sum P(2) = 1.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Frame = +2
Query: 65 GRPRRP-NCSLEXRPQWRTGPKSPGRGRQPG 154
G P +P N +P P PG G QPG
Sbjct: 297 GTPGKPGNRGQPGQPGGPGQPGHPGAGGQPG 327
WARNING: HSPs involving 98 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.93
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.325 0.144 0.472
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.154 0.561
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.316 0.134 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.315 0.135 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.321 0.142 0.448
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.350 0.157 0.586
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 100 95 10. 66 3 12 22 0.099 32
28 0.12 33
+2 0 100 96 10. 66 3 12 22 0.10 32
28 0.095 34
+1 0 100 95 10. 66 3 12 22 0.10 32
28 0.12 33
-1 0 100 96 10. 66 3 13 22 0.11 32
28 0.095 34
-2 0 100 96 10. 66 3 12 22 0.10 32
28 0.095 34
-3 0 100 97 10. 66 3 12 22 0.10 32
28 0.097 34
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 148
No. of states in DFA: 572 (56 KB)
Total size of DFA: 130 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 124.11u 0.90s 125.01t Elapsed: 00:00:36
Total cpu time: 124.18u 0.96s 125.14t Elapsed: 00:00:37
Start: Wed Jan 16 12:28:01 2002 End: Wed Jan 16 12:28:38 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000