R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 35 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11465937 ref|NP_054479.1| ribosomal protein S16 [Nicotiana tabacum]
>gi|133814|sp|P06374|RR16_TOBAC CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|71001|pir||R3NT16 ribosomal protein S16, chloroplast -
common tobacco chloroplast >gi|11806|emb|CAA27149.1| (X03415)
ribosomal protein S16 [Nicotiana tabacum]
>gi|435266|emb|CAA77340.1| (Z00044) ribosomal protein S16
[Nicotiana tabacum] >gi|225241|prf||1211235C ribosomal protein S16
[Nicotiana tabacum]
Length = 85
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 323 (113.7 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 63/75 (84%), Positives = 67/75 (89%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQRAVYRIVAIDVRSR EG+DLRKVGFYDPIKNQTYLN+P ILYFLE+GAQPTGTVQD
Sbjct: 10 GRKQRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQD 69
Query: 206 ILKRAGVFMXLSSNQ 250
ILK+A VF L NQ
Sbjct: 70 ILKKAEVFKELRPNQ 84
>gi|1350878|sp|P32087|RR16_SOLTU CHLOROPLAST 30S RIBOSOMAL PROTEIN S16
>gi|7440451|pir||T07057 ribosomal protein S16, chloroplast - potato
>gi|516564|gb|AAA74421.1| (U11638) ribosomal protein S16 [Solanum
tuberosum]
Length = 88
Frame 2 hits (HSPs): ___________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00732A: Ribosomal protein S16 proteins 1..36
BLOCKS BL00732B: Ribosomal protein S16 proteins 48..74
PFAM Ribosomal_S16: Ribosomal protein S16 8..64
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..63
PRODOM PD158799: RR16_SOLTU 65..87
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 2..11
__________________
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 61/75 (81%), Positives = 66/75 (88%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQRAVYRIVAIDVRSR EG+DL+KVGFYDPIKNQTYLN+P ILYFLE+GAQPT TVQD
Sbjct: 10 GRKQRAVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQD 69
Query: 206 ILKRAGVFMXLSSNQ 250
ILK+A VF L NQ
Sbjct: 70 ILKKAEVFKELRLNQ 84
>gi|6723716|emb|CAB67125.1| (AJ271079) ribosomal protein S16 [Oenothera elata
subsp. hookeri]
Length = 88
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 61/75 (81%), Positives = 65/75 (86%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQRAVYRIVAIDVRSR EGRDL KVGFYDPI N+TYL+IP ILYFLE+GAQPTGTV D
Sbjct: 10 GKKQRAVYRIVAIDVRSRREGRDLWKVGFYDPINNKTYLDIPGILYFLEKGAQPTGTVYD 69
Query: 206 ILKRAGVFMXLSSNQ 250
ILK+AGVF S NQ
Sbjct: 70 ILKKAGVFTEFSLNQ 84
>gi|11497506 ref|NP_054914.1| ribosomal protein S16 [Spinacia oleracea]
>gi|7636087|emb|CAB88707.1| (AJ400848) ribosomal protein S16
[Spinacia oleracea]
Length = 88
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
Plus Strand HSPs:
Score = 293 (103.1 bits), Expect = 6.7e-25, P = 6.7e-25
Identities = 61/80 (76%), Positives = 66/80 (82%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQRAVYRIVAIDVRSR EGRDL+KVGFYDPIK+QTYLN+P IL FLE+GAQPT TV D
Sbjct: 10 GRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYD 69
Query: 206 ILKRAGVFMXLSSNQQTXFH 265
ILKRA VF NQ T F+
Sbjct: 70 ILKRAEVFKEFRLNQ-TKFN 88
>gi|133812|sp|P10359|RR16_SINAL CHLOROPLAST 30S RIBOSOMAL PROTEIN S16
>gi|71000|pir||R3IS16 ribosomal protein S16, chloroplast - white
mustard chloroplast >gi|12217|emb|CAA31944.1| (X13609) 16S
ribosomal protein [Sinapis alba]
Length = 88
Frame 2 hits (HSPs): ___________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00732A: Ribosomal protein S16 proteins 1..36
BLOCKS BL00732B: Ribosomal protein S16 proteins 48..74
DOMO DM00778: ESCHERICHIACOLIRIBOSOMALPROTEIN 1..39
DOMO DM01106: ESCHERICHIACOLIRIBOSOMALPROTEIN 41..82
PFAM Ribosomal_S16: Ribosomal protein S16 8..64
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..63
PRODOM PD158798: RR16_SINAL 65..87
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 2..11
__________________
Plus Strand HSPs:
Score = 290 (102.1 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 57/75 (76%), Positives = 64/75 (85%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQRAVYRIVAIDVRSR EGRDLRKVGFYDPI NQTYLN+P IL FL++GAQPT TV D
Sbjct: 10 GRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPITNQTYLNLPAILDFLKKGAQPTRTVHD 69
Query: 206 ILKRAGVFMXLSSNQ 250
I K+AG+F L+ N+
Sbjct: 70 ISKKAGIFTELNLNK 84
>gi|836625|emb|CAA77799.1| (Z11741) ribosomal protein S16 [Solanum tuberosum]
Length = 74
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | 74
0 20 40 60
Plus Strand HSPs:
Score = 290 (102.1 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 57/70 (81%), Positives = 62/70 (88%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQDILKRA 220
AVYRIVAIDVRSR EG+DL+KVGFYDPIKNQTYLN+P ILYFLE+GAQPT TVQDILK+A
Sbjct: 1 AVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQDILKKA 60
Query: 221 GVFMXLSSNQ 250
VF L NQ
Sbjct: 61 EVFKELRLNQ 70
>gi|133806|sp|P25875|RR16_HORVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S16
>gi|282999|pir||S28766 ribosomal protein S16, chloroplast - barley
chloroplast >gi|11603|emb|CAA36973.1| (X52765) ribosomal protein
rps16 [Hordeum vulgare]
Length = 85
Frame 2 hits (HSPs): ________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00732A: Ribosomal protein S16 proteins 1..36
BLOCKS BL00732B: Ribosomal protein S16 proteins 48..74
DOMO DM00778: ESCHERICHIACOLIRIBOSOMALPROTEIN 1..39
DOMO DM01106: ESCHERICHIACOLIRIBOSOMALPROTEIN 41..82
PFAM Ribosomal_S16: Ribosomal protein S16 8..64
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..63
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 2..11
__________________
Plus Strand HSPs:
Score = 280 (98.6 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 55/68 (80%), Positives = 60/68 (88%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQ+AVYRIVAIDVRSR EGRDLRKVGFYDPIKNQT LN+P ILYFLE+GAQPT TV D
Sbjct: 10 GRKQQAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYD 69
Query: 206 ILKRAGVF 229
IL++A F
Sbjct: 70 ILRKAEFF 77
>gi|11467173 ref|NP_043006.1| ribosomal protein S16 [Zea mays]
>gi|133809|sp|P27723|RR16_MAIZE CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|71002|pir||R3ZM16 ribosomal protein S16, chloroplast -
maize chloroplast >gi|14292|emb|CAA43215.1| (X60823) ribosomal
protein S16 [Zea mays] >gi|902203|emb|CAA60267.1| (X86563)
ribosomal protein S16 [Zea mays]
Length = 85
Frame 2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 279 (98.2 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 54/68 (79%), Positives = 60/68 (88%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQ+A+YRIVAIDVRSR EGRDLRKVGFYDPIKNQT LN+P ILYFLE+GAQPT TV D
Sbjct: 10 GRKQQAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYD 69
Query: 206 ILKRAGVF 229
IL++A F
Sbjct: 70 ILRKAEFF 77
>gi|7525015 ref|NP_051041.1| ribosomal protein S16 [Arabidopsis thaliana]
>gi|6685910|sp|P56806|RR16_ARATH CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|5881676|dbj|BAA84367.1| (AP000423) ribosomal protein S16
[Arabidopsis thaliana]
Length = 79
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 251 (88.4 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 49/68 (72%), Positives = 56/68 (82%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQRAVYRI+AIDVR R EGRDL KVGFYDPI NQT+LN+ IL FL++GAQPT T D
Sbjct: 10 GRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHD 69
Query: 206 ILKRAGVF 229
I K+AG+F
Sbjct: 70 ISKKAGIF 77
>gi|11466392 ref|NP_038395.1| ribosomal protein S16 [Mesostigma viride]
>gi|7259535|gb|AAF43836.1|AF166114_48 (AF166114) ribosomal protein
S16 [Mesostigma viride]
Length = 84
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | | 84
0 20 40 60 80
Plus Strand HSPs:
Score = 183 (64.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 34/72 (47%), Positives = 54/72 (75%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G K+R YR++AID R R +G+ L+++GFYDPI +T L++P I+++L+ GAQ + TV +
Sbjct: 10 GRKKRPFYRVIAIDSRCRRDGKALKELGFYDPIAGKTQLDVPNIIFYLKAGAQTSETVGN 69
Query: 206 ILKRAGVFMXLS 241
+L++A VF LS
Sbjct: 70 LLQKAKVFNQLS 81
>gi|6692965|gb|AAF24924.1| (AF110598) 30S ribosomal protein S16 [Eremocharis
fruticosa] >gi|6692967|gb|AAF24926.1| (AF110600) 30S ribosomal
protein S16 [Bolax gummifera] >gi|6692968|gb|AAF24927.1| (AF110601)
30S ribosomal protein S16 [Klotzschia rhizophylla]
>gi|6692973|gb|AAF24932.1| (AF110606) 30S ribosomal protein S16
[Xanthosia atkinsoniana]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/36 (91%), Positives = 35/36 (97%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVAIDVRSR EGRDLRKVGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQSYLNV 36
>gi|6692966|gb|AAF24925.1| (AF110599) 30S ribosomal protein S16 [Azorella
trifurcata]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 32/36 (88%), Positives = 35/36 (97%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRI+AIDVRSR EGRDLRKVGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQSYLNV 36
>gi|6692901|gb|AAF24860.1| (AF110534) 30S ribosomal protein S16 [Cymopterus
montanus] >gi|6692902|gb|AAF24861.1| (AF110535) 30S ribosomal
protein S16 [Zizia aurea] >gi|6692903|gb|AAF24862.1| (AF110536) 30S
ribosomal protein S16 [Angelica archangelica]
>gi|6692904|gb|AAF24863.1| (AF110537) 30S ribosomal protein S16
[Heracleum lanatum] >gi|6692905|gb|AAF24864.1| (AF110538) 30S
ribosomal protein S16 [Pastinaca sativa] >gi|6692906|gb|AAF24865.1|
(AF110539) 30S ribosomal protein S16 [Aethusa cynapium]
>gi|6692907|gb|AAF24866.1| (AF110540) 30S ribosomal protein S16
[Crithmum maritimum] >gi|6692908|gb|AAF24867.1| (AF110541) 30S
ribosomal protein S16 [Aegokeras caespitosum]
>gi|6692909|gb|AAF24868.1| (AF110542) 30S ribosomal protein S16
[Anethum graveolens] >gi|6692910|gb|AAF24869.1| (AF110543) 30S
ribosomal protein S16 [Foeniculum vulgare]
>gi|6692911|gb|AAF24870.1| (AF110544) 30S ribosomal protein S16
[Petroselinum crispum] >gi|6692912|gb|AAF24871.1| (AF110545) 30S
ribosomal protein S16 [Apium graveolens] >gi|6692913|gb|AAF24872.1|
(AF110546) 30S ribosomal protein S16 [Conium maculatum]
>gi|6692914|gb|AAF24873.1| (AF110547) 30S ribosomal protein S16
[Daucus carota] >gi|6692915|gb|AAF24874.1| (AF110548) 30S ribosomal
protein S16 [Torilis arvensis] >gi|6692916|gb|AAF24875.1|
(AF110549) 30S ribosomal protein S16 [Anthriscus caucalis]
>gi|6692917|gb|AAF24876.1| (AF110550) 30S ribosomal protein S16
[Anisotome aromatica] >gi|6692918|gb|AAF24877.1| (AF110551) 30S
ribosomal protein S16 [Smyrnium olusatrum]
>gi|6692919|gb|AAF24878.1| (AF110552) 30S ribosomal protein S16
[Sium latifolium] >gi|6692920|gb|AAF24879.1| (AF110553) 30S
ribosomal protein S16 [Oenanthe pimpinelloides]
>gi|6692921|gb|AAF24880.1| (AF110554) 30S ribosomal protein S16
[Erigenia bulbosa] >gi|6692922|gb|AAF24881.1| (AF110555) 30S
ribosomal protein S16 [Komarovia anisosperma]
>gi|6692923|gb|AAF24882.1| (AF110556) 30S ribosomal protein S16
[Physospermum cornubiense] >gi|6692924|gb|AAF24883.1| (AF110557)
30S ribosomal protein S16 [Aulacospermum simplex]
>gi|6692925|gb|AAF24884.1| (AF110558) 30S ribosomal protein S16
[Aulacospermum anomalum] >gi|6692926|gb|AAF24885.1| (AF110559) 30S
ribosomal protein S16 [Pleurospermum foetens]
>gi|6692927|gb|AAF24886.1| (AF110560) 30S ribosomal protein S16
[Pleurospermum uralense] >gi|6692928|gb|AAF24887.1| (AF110561) 30S
ribosomal protein S16 [Eleutherospermum cicutarium]
>gi|6692929|gb|AAF24888.1| (AF110562) 30S ribosomal protein S16
[Diplolophium somaliense] >gi|6692930|gb|AAF24889.1| (AF110563) 30S
ribosomal protein S16 [Bupleurum americanum]
>gi|6692931|gb|AAF24890.1| (AF110564) 30S ribosomal protein S16
[Bupleurum ranunculoides] >gi|6692932|gb|AAF24891.1| (AF110565) 30S
ribosomal protein S16 [Bupleurum chinense]
>gi|6692933|gb|AAF24892.1| (AF110566) 30S ribosomal protein S16
[Bupleurum falcatum] >gi|6692934|gb|AAF24893.1| (AF110567) 30S
ribosomal protein S16 [Bupleurum rotundifolium]
>gi|6692935|gb|AAF24894.1| (AF110568) 30S ribosomal protein S16
[Bupleurum angulosum] >gi|6692936|gb|AAF24895.1| (AF110569) 30S
ribosomal protein S16 [Bupleurum fruticosum]
>gi|6692937|gb|AAF24896.1| (AF110570) 30S ribosomal protein S16
[Polemannia montana] >gi|6692938|gb|AAF24897.1| (AF110571) 30S
ribosomal protein S16 [Polemannia simplicior]
>gi|6692939|gb|AAF24898.1| (AF110572) 30S ribosomal protein S16
[Glia prolifera] >gi|6692940|gb|AAF24899.1| (AF110573) 30S
ribosomal protein S16 [Anginon rugosum] >gi|6692941|gb|AAF24900.1|
(AF110574) 30S ribosomal protein S16 [Anginon verticillatum]
>gi|6692942|gb|AAF24901.1| (AF110575) 30S ribosomal protein S16
[Heteromorpha arborescens var. arborescens]
>gi|6692943|gb|AAF24902.1| (AF110576) 30S ribosomal protein S16
[Heteromorpha involucrata] >gi|6692944|gb|AAF24903.1| (AF110577)
30S ribosomal protein S16 [Heteromorpha involucrata]
>gi|6692945|gb|AAF24904.1| (AF110578) 30S ribosomal protein S16
[Heteromorpha arborescens var. abyssinica]
>gi|6692946|gb|AAF24905.1| (AF110579) 30S ribosomal protein S16
[Heteromorpha stenophylla var. transvaalensis]
>gi|6692947|gb|AAF24906.1| (AF110580) 30S ribosomal protein S16
[Heteromorpha pubescens] >gi|6692948|gb|AAF24907.1| (AF110581) 30S
ribosomal protein S16 [Dracosciadium italae]
>gi|6692949|gb|AAF24908.1| (AF110582) 30S ribosomal protein S16
[Annesorhiza altiscapa] >gi|6692950|gb|AAF24909.1| (AF110583) 30S
ribosomal protein S16 [Eryngium alpinum] >gi|6692951|gb|AAF24910.1|
(AF110584) 30S ribosomal protein S16 [Eryngium planum]
>gi|6692952|gb|AAF24911.1| (AF110585) 30S ribosomal protein S16
[Eryngium proteaflorum] >gi|6692953|gb|AAF24912.1| (AF110586) 30S
ribosomal protein S16 [Eryngium coronatum]
>gi|6692954|gb|AAF24913.1| (AF110587) 30S ribosomal protein S16
[Eryngium yuccifolium] >gi|6692955|gb|AAF24914.1| (AF110588) 30S
ribosomal protein S16 [Eryngium spiculosum]
>gi|6692956|gb|AAF24915.1| (AF110589) 30S ribosomal protein S16
[Eryngium mexiae] >gi|6692957|gb|AAF24916.1| (AF110590) 30S
ribosomal protein S16 [Eryngium alternatum]
>gi|6692958|gb|AAF24917.1| (AF110591) 30S ribosomal protein S16
[Hacquetia epipactis] >gi|6692959|gb|AAF24918.1| (AF110592) 30S
ribosomal protein S16 [Sanicula canadensis]
>gi|6692960|gb|AAF24919.1| (AF110593) 30S ribosomal protein S16
[Petagnaea saniculifolia] >gi|6692961|gb|AAF24920.1| (AF110594) 30S
ribosomal protein S16 [Astrantia major] >gi|6692962|gb|AAF24921.1|
(AF110595) 30S ribosomal protein S16 [Steganotaenia araliacea]
>gi|6692963|gb|AAF24922.1| (AF110596) 30S ribosomal protein S16
[Steganotaenia araliacea] >gi|6692964|gb|AAF24923.1| (AF110597) 30S
ribosomal protein S16 [Polemanniopsis marlothii]
>gi|7688550|gb|AAF67416.1| (AF123728) ribosomal protein S16
[Pseudorlaya pumila] >gi|7688552|gb|AAF67417.1| (AF123729)
ribosomal protein S16 [Daucus pusillus] >gi|7688560|gb|AAF67421.1|
(AF123733) ribosomal protein S16 [Orlaya kochii]
>gi|7688564|gb|AAF67423.1| (AF123735) ribosomal protein S16 [Laser
trilobum] >gi|7688566|gb|AAF67424.1| (AF123736) ribosomal protein
S16 [Polylophium panjutinii] >gi|7688576|gb|AAF67429.1| (AF123741)
ribosomal protein S16 [Torilis japonica] >gi|7688578|gb|AAF67430.1|
(AF123742) ribosomal protein S16 [Yabea microcarpa]
>gi|7688582|gb|AAF67432.1| (AF123744) ribosomal protein S16 [Lisaea
papyracea] >gi|7688594|gb|AAF67438.1| (AF123750) ribosomal protein
S16 [Ferula olivacea] >gi|7688596|gb|AAF67439.1| (AF123751)
ribosomal protein S16 [Ferula kokanica] >gi|7688598|gb|AAF67440.1|
(AF123752) ribosomal protein S16 [Ferula tenuisecta]
>gi|7688604|gb|AAF67443.1| (AF123755) ribosomal protein S16
[Myrrhis odorata] >gi|7688606|gb|AAF67444.1| (AF123756) ribosomal
protein S16 [Ligusticum scoticum]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 32/36 (88%), Positives = 34/36 (94%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVAIDVRSR EGRDLR VGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIVAIDVRSRREGRDLRNVGFYDPIKNQSYLNV 36
>gi|11466766 ref|NP_039362.1| ribosomal protein S16 [Oryza sativa]
>gi|133811|sp|P12151|RR16_ORYSA CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|71003|pir||R3RZ16 ribosomal protein S16 - rice chloroplast
>gi|669079|emb|CAA34009.1| (X15901) ribosomal protein S16 [Oryza
sativa] >gi|226649|prf||1603356C ribosomal protein S16 [Oryza
sativa]
Length = 62
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 32/44 (72%), Positives = 36/44 (81%), Frame = +2
Query: 98 RKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQDILKRAGVF 229
RK FYDPIKNQT LN+P ILYFLE+GAQPT TV DIL++A F
Sbjct: 11 RKQRFYDPIKNQTCLNVPAILYFLEKGAQPTRTVSDILRKAEFF 54
>gi|7688600|gb|AAF67441.1| (AF123753) ribosomal protein S16 [Scandix
pecten-veneris]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 32/36 (88%), Positives = 34/36 (94%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVAIDVRSR EGRDLR VGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIVAIDVRSRREGRDLRNVGFYDPIKNQSYLNL 36
>gi|7688590|gb|AAF67436.1| (AF123748) ribosomal protein S16 [Astrodaucus
orientalis] >gi|7688592|gb|AAF67437.1| (AF123749) ribosomal protein
S16 [Szovitsia callicarpa]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 31/36 (86%), Positives = 34/36 (94%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVAIDVRSR EGRD+R VGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIVAIDVRSRREGRDIRNVGFYDPIKNQSYLNV 36
>gi|7688556|gb|AAF67419.1| (AF123731) ribosomal protein S16 [Laserpitium
hispidum] >gi|7688558|gb|AAF67420.1| (AF123732) ribosomal protein
S16 [Laserpitium hispidum]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 31/36 (86%), Positives = 34/36 (94%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVA+DVRSR EGRDLR VGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIVAMDVRSRREGRDLRNVGFYDPIKNQSYLNV 36
>gi|6692974|gb|AAF24933.1| (AF110607) 30S ribosomal protein S16 [Hydrocotyle
rotundifolia] >gi|6692975|gb|AAF24934.1| (AF110608) 30S ribosomal
protein S16 [Hydrocotyle pusilla] >gi|6692976|gb|AAF24935.1|
(AF110609) 30S ribosomal protein S16 [Aralia chinensis]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 32/36 (88%), Positives = 34/36 (94%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVAIDVRSR EGRDLRKVGFYDPIKNQ+ LN+
Sbjct: 1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQSCLNV 36
>gi|7688554|gb|AAF67418.1| (AF123730) ribosomal protein S16 [Agrocharis
incognita] >gi|7688562|gb|AAF67422.1| (AF123734) ribosomal protein
S16 [Laserpitium siler] >gi|7688568|gb|AAF67425.1| (AF123737)
ribosomal protein S16 [Melanoselinum decipiens]
>gi|7688570|gb|AAF67426.1| (AF123738) ribosomal protein S16
[Melanoselinum decipiens] >gi|7688572|gb|AAF67427.1| (AF123739)
ribosomal protein S16 [Monizia edulis] >gi|7688574|gb|AAF67428.1|
(AF123740) ribosomal protein S16 [Chaetosciadium trichospermum]
>gi|7688580|gb|AAF67431.1| (AF123743) ribosomal protein S16
[Turgenia latifolia] >gi|7688584|gb|AAF67433.1| (AF123745)
ribosomal protein S16 [Caucalis platycarpos]
>gi|7688586|gb|AAF67434.1| (AF123746) ribosomal protein S16
[Glochidotheca foeniculacea] >gi|7688588|gb|AAF67435.1| (AF123747)
ribosomal protein S16 [Artedia squamata] >gi|7688602|gb|AAF67442.1|
(AF123754) ribosomal protein S16 [Osmorhiza longistylis]
Length = 36
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 31/36 (86%), Positives = 33/36 (91%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNI 148
AVYRIVAIDVRSR EGRD R VGFYDPIKNQ+YLN+
Sbjct: 1 AVYRIVAIDVRSRREGRDFRNVGFYDPIKNQSYLNV 36
>gi|2500468|sp|P74410|RS16_SYNY3 30S RIBOSOMAL PROTEIN S16
>gi|7440452|pir||S76249 ribosomal protein S16 - Synechocystis sp.
(strain PCC 6803) >gi|1653595|dbj|BAA18508.1| (D90914) 30S
ribosomal protein S16 [Synechocystis sp.]
Length = 82
Frame 2 hits (HSPs): _____________________________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00732A: Ribosomal protein S16 proteins 1..36
BLOCKS BL00732B: Ribosomal protein S16 proteins 48..74
PFAM Ribosomal_S16: Ribosomal protein S16 8..64
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..63
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 2..11
__________________
Plus Strand HSPs:
Score = 161 (56.7 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 33/73 (45%), Positives = 49/73 (67%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G K+ YRIVA+ +R +GR L ++GFY+P ++T L++P I+ L+ GAQPT TV+
Sbjct: 10 GKKREVSYRIVAMHSTTRRDGRPLEELGFYNPRTDETRLDVPAIVKRLKEGAQPTDTVRS 69
Query: 206 ILKRAGVFMXLSS 244
IL +A VF L +
Sbjct: 70 ILTKAQVFEQLKA 82
>gi|11465818 ref|NP_053962.1| 30S ribosomal protein S16 [Porphyra purpurea]
>gi|1710695|sp|P51352|RR16_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|2147028|pir||S73273 ribosomal protein S16, chloroplast -
red alga (Porphyra purpurea) chloroplast >gi|1276818|gb|AAC08238.1|
(U38804) 30S ribosomal protein S16 [Porphyra purpurea]
Length = 82
Frame 2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 32/67 (47%), Positives = 49/67 (73%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G KQ+ YRIVA+D RS+ +G+ + ++GFY+PI N+T ++I IL L++GAQ T TV++
Sbjct: 10 GRKQQPSYRIVAMDSRSKRDGKAIEELGFYNPITNETRIDIAKILKRLKQGAQTTRTVKN 69
Query: 206 ILKRAGV 226
IL A +
Sbjct: 70 ILNEAQI 76
>gi|11467374 ref|NP_043231.1| ribosomal protein S16 [Cyanophora paradoxa]
>gi|1350876|sp|P48139|RR16_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S16
>gi|7440454|pir||T06919 ribosomal protein S16 - Cyanophora paradoxa
cyanelle >gi|1016175|gb|AAA81262.1| (U30821) ribosomal protein S16
[Cyanophora paradoxa]
Length = 77
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 30/67 (44%), Positives = 46/67 (68%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G K + YRIVA++ SR +G+ + ++GFY+P N++ LNI I +E+GAQPT TV+
Sbjct: 10 GRKGQVTYRIVAMNNLSRRDGKAIEELGFYNPRTNESSLNIANIKRRIEQGAQPTNTVRY 69
Query: 206 ILKRAGV 226
IL +A +
Sbjct: 70 ILAKANI 76
>gi|10120996|pdb|1EMW|A Chain A, Solution Structure Of The Ribosomal Protein
S16 From Thermus Thermophilus >gi|10835578|pdb|1FJF|P Chain P,
Structure Of The Thermus Thermophilus 30s Ribosomal Subunit
>gi|10835600|pdb|1FJG|P Chain P, Structure Of The Thermus
Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics
Streptomycin, Spectinomycin And Paromomycin
Length = 88
Frame 2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 30/71 (42%), Positives = 44/71 (61%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQT-YLNIPV--ILYFLERGAQPTGT 196
G+K YRIV D R + +G+ + K+G+YDP K +L + V Y+L GAQPT T
Sbjct: 10 GSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDT 69
Query: 197 VQDILKRAGVF 229
+ +L++AGVF
Sbjct: 70 ARRLLRQAGVF 80
>gi|7488723|pir||T06340 ribosomal protein S16 - soybean chloroplast (fragment)
>gi|984308|gb|AAA80642.1| (U26948) ribosomal protein S16 [Glycine
max]
Length = 28
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 28
0 20
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/28 (96%), Positives = 27/28 (96%), Frame = +3
Query: 39 EPFIESLQSMFDLXEREEIFGKWVFMIQ 122
EPFIESLQSMFDL EREEIFGKWVFMIQ
Sbjct: 1 EPFIESLQSMFDLEEREEIFGKWVFMIQ 28
>gi|7440449|pir||T05282 ribosomal protein S16, organellar - Arabidopsis
thaliana >gi|3096931|emb|CAA18841.1| (AL023094) putative ribosomal
protein S16 [Arabidopsis thaliana] >gi|7270412|emb|CAB80179.1|
(AL161585) putative ribosomal protein S16 [Arabidopsis thaliana]
Length = 113
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIK-----NQTYLNIPVILYFLERGAQPT 190
G K R YR+V D +SR +G+ + +GFYDP++ ++ L I Y+L GAQPT
Sbjct: 11 GCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYWLSVGAQPT 70
Query: 191 GTVQDILKRAGV 226
TV+ +L RAG+
Sbjct: 71 DTVESMLFRAGL 82
>gi|7769072|gb|AAF69243.1|AF173880_6 (AF173880) 30S ribosomal protein S16-like
protein [Acidithiobacillus ferrooxidans]
Length = 86
Frame 2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 86
0 20 40 60 80
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/69 (44%), Positives = 41/69 (59%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPV--ILYFLERGAQPTGTV 199
G K+R Y IV D RSR +GR + ++GFY+PI L I Y+L +GAQP+ TV
Sbjct: 10 GAKKRPFYHIVVADSRSRRDGRFIERLGFYNPIGAVAELRIDKERAAYWLSQGAQPSDTV 69
Query: 200 QDILKRAGV 226
LK+ GV
Sbjct: 70 AGFLKKEGV 78
>gi|6692969|gb|AAF24928.1| (AF110602) 30S ribosomal protein S16 [Centella
erecta] >gi|6692970|gb|AAF24929.1| (AF110603) 30S ribosomal protein
S16 [Centella asiatica] >gi|6692971|gb|AAF24930.1| (AF110604) 30S
ribosomal protein S16 [Centella triflora]
>gi|6692972|gb|AAF24931.1| (AF110605) 30S ribosomal protein S16
[Centella hirtella]
Length = 28
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | 28
0 20
Plus Strand HSPs:
Score = 135 (47.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 27/28 (96%), Positives = 27/28 (96%), Frame = +2
Query: 41 AVYRIVAIDVRSRXEGRDLRKVGFYDPI 124
AVYRIVAIDVRSR EGRDLRKVGFYDPI
Sbjct: 1 AVYRIVAIDVRSRREGRDLRKVGFYDPI 28
>gi|11357038|pir||E82874 ribosomal protein S16 UU568 [imported] - Ureaplasma
urealyticum >gi|6899576|gb|AAF30982.1|AE002155_4 (AE002155)
ribosomal protein S16 [Ureaplasma urealyticum]
Length = 101
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 25/68 (36%), Positives = 42/68 (61%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
GT ++ +RIV +D +++ G + +G YDP+ Q L IL L+ GAQP+ TV++
Sbjct: 13 GTHKKPFFRIVVMDAKTKANGAYIENLGHYDPVLGQVVLKKEAILAQLQNGAQPSETVKN 72
Query: 206 ILKRAGVF 229
IL + G++
Sbjct: 73 ILSQEGIW 80
>gi|12056104|emb|CAC21226.1| (AJ224859) ribosomal protein S16 [Thermus
thermophilus]
Length = 91
Frame 2 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 28/64 (43%), Positives = 41/64 (64%), Frame = +2
Query: 47 YRIVAIDVRSRXEGRDLRKVGFYDPIKNQT-YLNIPV--ILYFLERGAQPTGTVQDILKR 217
YRIV D R + +G+ + K+G+YDP K +L + V Y+L GAQPT T + +L++
Sbjct: 20 YRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQ 79
Query: 218 AGVF 229
AGVF
Sbjct: 80 AGVF 83
>gi|11467622 ref|NP_050674.1| ribosomal protein S16 [Guillardia theta]
>gi|6094133|sp|O78423|RR16_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|3602947|gb|AAC35608.1| (AF041468) ribosomal protein S16
[Guillardia theta]
Length = 76
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 23/64 (35%), Positives = 43/64 (67%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G K +A YR+V + S+ +GR + ++GFY+P N+T++N+ + L +G +PT TV++
Sbjct: 10 GRKGQASYRLVVMPSTSKRDGRAIEELGFYNPCTNETHINVERVKVRLSQGVKPTSTVKN 69
Query: 206 ILKR 217
+L +
Sbjct: 70 LLDK 73
>gi|6015979|gb|AAF01482.1|AF137263_1 (AF137263) 30S ribosomal protein S16-like
protein [Bacteroides thetaiotaomicron]
Length = 184
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/71 (40%), Positives = 42/71 (59%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTY--LNIPVILYFLERGAQPTGTV 199
G K A Y IV D R+ +G+ + K+G Y+P N LN L ++ +GAQP+ TV
Sbjct: 11 GRKSYAFYSIVIADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDAALAWVLKGAQPSDTV 70
Query: 200 QDILKRAGVFM 232
++IL R GV+M
Sbjct: 71 RNILSREGVYM 81
>gi|11467477 ref|NP_043623.1| 30S ribosomal protein S16 [Odontella sinensis]
>gi|1350877|sp|P49503|RR16_ODOSI CHLOROPLAST 30S RIBOSOMAL PROTEIN
S16 >gi|7440453|pir||S78282 ribosomal protein S16, chloroplast -
Odontella sinensis chloroplast >gi|1185172|emb|CAA91655.1| (Z67753)
30S ribosomal protein S16 [Odontella sinensis]
Length = 79
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 24/67 (35%), Positives = 45/67 (67%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G K++ YR+V ++ +R +GR + +VG+Y+ I ++Y ++ I +L GA+PT TV +
Sbjct: 10 GRKKQPSYRLVVMENTTRRDGRPVEQVGYYNTITKESYFDVIKIKKWLNYGAKPTQTVLN 69
Query: 206 ILKRAGV 226
+LK+A +
Sbjct: 70 LLKKAKI 76
>gi|7388144|sp|Q9Z965|RS16_CHLPN 30S RIBOSOMAL PROTEIN S16
>gi|7440456|pir||B72117 S16 ribosomal protein - Chlamydophila
pneumoniae (strain CWL029) >gi|4376379|gb|AAD18269.1| (AE001598)
S16 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
>gi|8163473|gb|AAF73692.1| (AE002223) ribosomal protein S16
[Chlamydophila pneumoniae AR39] >gi|8978490|dbj|BAA98327.1|
(AP002545) S16 ribosomal protein [Chlamydophila pneumoniae J138]
Length = 119
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 119
0 50 100
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 29/80 (36%), Positives = 46/80 (57%), Frame = +2
Query: 23 RGTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTY-LNIPVILYFLERGAQPTGTV 199
+G + VYR+V DV S +G+ + +G+YDP + Y L I Y+LERGAQ +
Sbjct: 10 QGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSSINYQLKSERIFYWLERGAQLSSKA 69
Query: 200 QDILKRA--GVFMXLSSNQQ 253
+ ++K+ GV+ L S Q+
Sbjct: 70 EALVKQGAPGVYSALLSKQE 89
>gi|7388157|sp|Q9X1Q2|RS16_THEMA 30S RIBOSOMAL PROTEIN S16
>gi|7440450|pir||G72236 ribosomal protein S16 - Thermotoga maritima
(strain MSB8) >gi|4982135|gb|AAD36633.1|AE001802_2 (AE001802)
ribosomal protein S16 [Thermotoga maritima]
Length = 95
Frame 2 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 23/68 (33%), Positives = 44/68 (64%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKN-QTYLNIPVILYFLERGAQPTGTVQ 202
G + + YRIV +D R R +G + +G+Y+P+K + +++ + ++ +GAQP+ TV+
Sbjct: 10 GKRHQPFYRIVVVDSRKRRDGAYIESLGYYNPLKEGEIKIDVERAVEWILKGAQPSDTVR 69
Query: 203 DILKRAGV 226
DI ++ GV
Sbjct: 70 DIFRKFGV 77
>gi|6094161|sp|O83875|RS16_TREPA 30S RIBOSOMAL PROTEIN S16
>gi|7440446|pir||F71267 probable ribosomal protein S16 (rpsP) -
syphilis spirochete >gi|3323218|gb|AAC65857.1| (AE001259) ribosomal
protein S16 (rpsP) [Treponema pallidum]
Length = 123
Frame 2 hits (HSPs): _________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
__________________
Annotated Domains:
PFAM Ribosomal_S16: Ribosomal protein S16 9..68
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 10..67
PRODOM PD167364: RS16_TREPA 69..122
PROSITE MITOCH_CARRIER: Mitochondrial energy tra 67..76
__________________
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIK---NQTYLNIPVILYFLERGAQPTGT 196
G+K+R YRIV D R +GR + ++G Y PI + + ++LERGAQP+ T
Sbjct: 11 GSKKRPYYRIVVQDAREPRDGRAIEELGIYQPIAPKGTEVSFRLDRARFWLERGAQPSDT 70
Query: 197 VQDIL--KRAGVFMXLSSNQQ 253
V+ +L +R V ++S+++
Sbjct: 71 VRRLLQSRRGSVLNAVASDER 91
>gi|6601576|gb|AAF19037.1| (L08896) 30S ribosomal protein S16 [Mycoplasma
gallisepticum]
Length = 80
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 23/69 (33%), Positives = 43/69 (62%), Frame = +2
Query: 47 YRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQDILKRAGV 226
YR+V +D R + +G + +G DPI LN + + +L++GAQPT TV+ IL + G+
Sbjct: 11 YRMVVVDSRVKRDGSYIELIGHIDPINGANKLNGALAIEWLKKGAQPTDTVKSILSKEGI 70
Query: 227 FMXLSSNQQ 253
+ +++++
Sbjct: 71 WKQYAASKK 79
>gi|12724572|gb|AAK05667.1|AE006387_10 (AE006387) 30S ribosomal protein S16
[Lactococcus lactis subsp. lactis]
Length = 90
Frame 2 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 26/69 (37%), Positives = 44/69 (63%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPI--KNQTYLNIPVILYFLERGAQPTGTV 199
G+K++ YRI D R+ +G+ + VG Y+P+ + Q L +L +L +GAQP+ TV
Sbjct: 11 GSKKKPFYRINVADSRAPRDGKFIETVGTYNPLVTEEQVTLKEERVLEWLSKGAQPSDTV 70
Query: 200 QDILKRAGV 226
+++L +AGV
Sbjct: 71 RNLLSKAGV 79
>gi|133804|sp|P28521|RR16_CYACA CHLOROPLAST 30S RIBOSOMAL PROTEIN S16
>gi|280367|pir||S25087 ribosomal protein S16, chloroplast - red
alga (Cyanidium caldarium) chloroplast >gi|11283|emb|CAA44462.1|
(X62578) small ribosomal subunit protein S16 [Cyanidium caldarium]
Length = 77
Frame 2 hits (HSPs): ____________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00732A: Ribosomal protein S16 proteins 1..36
BLOCKS BL00732B: Ribosomal protein S16 proteins 48..74
DOMO DM00778: ESCHERICHIACOLIRIBOSOMALPROTEIN 1..39
DOMO DM01106: ESCHERICHIACOLIRIBOSOMALPROTEIN 41..76
PFAM Ribosomal_S16: Ribosomal protein S16 8..64
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..63
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 2..11
__________________
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/67 (34%), Positives = 43/67 (64%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQD 205
G K++ ++IV ++ + +G+ + ++GF +P + YLNI I ++L GA+PT TV D
Sbjct: 10 GRKKQTSFKIVVMNNLDKRDGQAIEELGFMNPRTKEKYLNINKINHYLRLGAKPTKTVFD 69
Query: 206 ILKRAGV 226
+L +A +
Sbjct: 70 LLNKAKI 76
>gi|11276624|pir||E81180 30S ribosomal protein S16 NMB0592 [imported] -
Neisseria meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225822|gb|AAF41020.1| (AE002415) 30S ribosomal protein S16
[Neisseria meningitidis MC58] >gi|7379515|emb|CAB84078.1|
(AL162754) putative 30S ribosomal protein S16 [Neisseria
meningitidis Z2491]
Length = 81
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 23/67 (34%), Positives = 41/67 (61%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTY----LNIPVILYFLERGAQPTG 193
G+K R Y ++ D RSR +GR + +VGFY+P+ N+ LN + +++ +GAQ +
Sbjct: 10 GSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVANEKQERVRLNADRLNHWIAQGAQVSD 69
Query: 194 TVQDILK 214
+V ++K
Sbjct: 70 SVAKLIK 76
>gi|6094159|sp|O69879|RS16_STRCO 30S RIBOSOMAL PROTEIN S16
>gi|7481752|pir||T34776 ribosomal protein S16 - Streptomyces
coelicolor >gi|3191984|emb|CAA19383.1| (AL023797) 30S ribosomal
protein S16 [Streptomyces coelicolor A3(2)]
Length = 139
Frame 2 hits (HSPs): ______________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
__________________
Annotated Domains:
PFAM Ribosomal_S16: Ribosomal protein S16 9..67
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 9..66
PRODOM PD057816: RS16(2) 68..119
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 3..12
__________________
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 25/61 (40%), Positives = 36/61 (59%), Frame = +2
Query: 47 YRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPV--ILYFLERGAQPTGTVQDILKRA 220
YRIV D R+R +GR + ++G Y P N + + + + Y+L GAQPT V ILK+
Sbjct: 18 YRIVVADSRTRRDGRAIEEIGKYHPTYNPSVMEVDAERVAYWLGVGAQPTEPVLAILKKT 77
Query: 221 G 223
G
Sbjct: 78 G 78
>gi|6094160|sp|O86868|RS16_STRLI 30S RIBOSOMAL PROTEIN S16
>gi|3336919|emb|CAB06804.1| (Z86111) 30S ribosomal protein S16
[Streptomyces lividans]
Length = 139
Frame 2 hits (HSPs): ______________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
__________________
Annotated Domains:
PFAM Ribosomal_S16: Ribosomal protein S16 9..67
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 9..66
PRODOM PD057816: RS16(2) 68..119
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 3..12
__________________
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 25/61 (40%), Positives = 36/61 (59%), Frame = +2
Query: 47 YRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPV--ILYFLERGAQPTGTVQDILKRA 220
YRIV D R+R +GR + ++G Y P N + + + + Y+L GAQPT V ILK+
Sbjct: 18 YRIVVADSRTRRDGRAIEEIGKYHPTYNPSVMEVDAERVAYWLGVGAQPTEPVLAILKKT 77
Query: 221 G 223
G
Sbjct: 78 G 78
>gi|11360423|pir||H82847 30S ribosomal protein S16 XF0107 [imported] - Xylella
fastidiosa (strain 9a5c) >gi|9104887|gb|AAF82920.1|AE003864_8
(AE003864) 30S ribosomal protein S16 [Xylella fastidiosa]
Length = 86
Frame 2 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 86
0 20 40 60 80
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 22/67 (32%), Positives = 44/67 (65%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPI----KNQTYLNIPVILYFLERGAQPTG 193
G K+R Y+I+ D R++ +GR++ +VG Y+P+ +++ LN+ + ++++ GAQ T
Sbjct: 10 GAKKRPFYQIIVTDSRNKRDGRNIERVGHYNPVAQGAESRVVLNMARVEHWVKNGAQLTD 69
Query: 194 TVQDILK 214
V+ +LK
Sbjct: 70 KVRSLLK 76
>gi|7388142|sp|O84029|RS16_CHLTR 30S RIBOSOMAL PROTEIN S16
>gi|7440459|pir||E71566 probable S16 ribosomal protein - Chlamydia
trachomatis (serotype D, strain UW3/Cx) >gi|3328416|gb|AAC67616.1|
(AE001277) S16 Ribosomal Protein [Chlamydia trachomatis]
Length = 116
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 27/79 (34%), Positives = 43/79 (54%), Frame = +2
Query: 23 RGTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTY-LNIPVILYFLERGAQPTGTV 199
+G K VYR+V DV S +G+ + +G+YDP Q Y L I Y+L +GA+ T
Sbjct: 10 QGRKNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYQLKSERIFYWLNQGAELTEKA 69
Query: 200 QDILKRA--GVFMXLSSNQ 250
++K+ GV+ L + +
Sbjct: 70 GALVKQGAPGVYAELMAKK 88
>gi|8163190|gb|AAF73544.1| (AE002297) ribosomal protein S16 [Chlamydia
muridarum]
Length = 116
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 27/79 (34%), Positives = 43/79 (54%), Frame = +2
Query: 23 RGTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTY-LNIPVILYFLERGAQPTGTV 199
+G K VYR+V DV S +G+ + +G+YDP Q Y L I Y+L +GA+ T
Sbjct: 10 QGRKNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYQLKSERIFYWLNQGAELTEKA 69
Query: 200 QDILKRA--GVFMXLSSNQ 250
++K+ GV+ L + +
Sbjct: 70 GALVKQGAPGVYAELMAKK 88
>gi|585937|sp|P21474|RS16_BACSU 30S RIBOSOMAL PROTEIN S16 (BS17)
>gi|477949|pir||C47154 ribosomal protein S16 (BS17) rpsP - Bacillus
subtilis >gi|2309081|dbj|BAA21692.1| (D14356) 30S ribosomal protein
S16 [Bacillus subtilis] >gi|2633971|emb|CAB13472.1| (Z99112)
ribosomal protein S16 (BS17) [Bacillus subtilis]
Length = 90
Frame 2 hits (HSPs): ____________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00732A: Ribosomal protein S16 proteins 1..36
BLOCKS BL00732B: Ribosomal protein S16 proteins 50..76
DOMO DM00778: ESCHERICHIACOLIRIBOSOMALPROTEIN 1..40
DOMO DM01106: ESCHERICHIACOLIRIBOSOMALPROTEIN 42..84
PFAM Ribosomal_S16: Ribosomal protein S16 8..66
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..65
PRODOM PD158100: RS16_BACSU 67..88
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 3..12
__________________
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/78 (32%), Positives = 42/78 (53%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIP--VILYFLERGAQPTGTV 199
G K+ YRIV D RS +GR + VG Y+P+ + I + L +L+ GA+P+ TV
Sbjct: 11 GAKKSPFYRIVVADSRSPRDGRFIETVGTYNPVAKPAEVKIDEELALKWLQTGAKPSDTV 70
Query: 200 QDILKRAGVFMXLSSNQQ 253
+++ G+ + +Q
Sbjct: 71 RNLFSSQGIMEKFHNAKQ 88
>gi|3024578|sp|O07348|RS16_THEAQ 30S RIBOSOMAL PROTEIN S16
>gi|2149138|gb|AAB58503.1| (U82109) ribosomal protein S16 [Thermus
aquaticus]
Length = 67
Frame 2 hits (HSPs): ____________________________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
__________________
Annotated Domains:
PFAM Ribosomal_S16: Ribosomal protein S16 8..67
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/58 (43%), Positives = 34/58 (58%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQT-YLNIPV--ILYFLERGAQPT 190
G+K YRIV DVR + +G + K+G+YDP K +L + V Y+L GAQPT
Sbjct: 10 GSKHNPHYRIVVTDVRRKRDGAYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPT 67
>gi|8777434|dbj|BAA97024.1| (AB024035) 30S ribosomal protein S16 [Arabidopsis
thaliana]
Length = 135
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/72 (36%), Positives = 41/72 (56%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTY-----LNIPVILYFLERGAQPT 190
G K R +R++A D RS +G+ L +G+++P+ Q L I Y+L GAQP+
Sbjct: 11 GCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIKYWLSVGAQPS 70
Query: 191 GTVQDILKRAGV 226
VQ +L R+G+
Sbjct: 71 DPVQRLLFRSGL 82
>gi|7473841|pir||D75414 ribosomal protein S16 - Deinococcus radiodurans (strain
R1) >gi|6459040|gb|AAF10863.1|AE001976_6 (AE001976) ribosomal
protein S16 [Deinococcus radiodurans]
Length = 84
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 84
0 20 40 60 80
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 26/70 (37%), Positives = 40/70 (57%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIK-NQTYLNIPV--ILYFLERGAQPTGT 196
G+ YRIV DVR +G + +G YDP K ++ +L I V +++ +GAQPT T
Sbjct: 10 GSAHNPHYRIVVADVRRPRDGGYIESLGHYDPRKTSENFLKIDVERANHWIAQGAQPTDT 69
Query: 197 VQDILKRAGV 226
+ +L+ GV
Sbjct: 70 ARRLLRSQGV 79
>gi|10175103|dbj|BAB06202.1| (AP001515) 30S ribosomal protein S16 [Bacillus
halodurans]
Length = 90
Frame 2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/73 (30%), Positives = 43/73 (58%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIPV--ILYFLERGAQPTGTV 199
G+K+ YR+V D RS +GR + ++G Y+P+ + + L ++ +GA+P+ TV
Sbjct: 11 GSKKAPFYRVVVADSRSPRDGRFIEEIGTYNPLTQPAKVELKEDRALDWMLKGAKPSDTV 70
Query: 200 QDILKRAGVFMXL 238
+++ +AG+ L
Sbjct: 71 RNLFSKAGLMEKL 83
>gi|3914894|sp|P81290|RS16_BACST 30S RIBOSOMAL PROTEIN S16
>gi|243177|gb|AAB21088.1| ribosomal protein S16 [Bacillus
stearothermophilus, Peptide, 88 aa]
Length = 88
Frame 2 hits (HSPs): _______________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
__________________
Annotated Domains:
PFAM Ribosomal_S16: Ribosomal protein S16 8..66
PRODOM PD003791: RS16(16) RR16(10) RT24(3) 8..65
PRODOM PD157411: RS16_BACST 67..87
PROSITE RIBOSOMAL_S16: Ribosomal protein S16 sig 2..11
__________________
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 23/68 (33%), Positives = 40/68 (58%), Frame = +2
Query: 26 GTKQRAVYRIVAIDVRSRXEGRDLRKVGFYDPIKNQTYLNIP--VILYFLERGAQPTGTV 199
G K++ YRIV D RS +GR + +G Y+P+ + I + L +L+ GA+P+ T
Sbjct: 10 GAKKKPFYRIVVADSRSPRDGRFIETIGTYNPVAEPAEIKIDEELALKWLQNGAKPSDT- 68
Query: 200 QDILKRAGV 226
+ +L + G+
Sbjct: 69 RSLLSKQGL 77
WARNING: HSPs involving 35 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.349 0.157 0.503
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.332 0.147 0.440
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.337 0.146 0.497
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.376 0.170 0.688
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.161 0.522
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.342 0.148 0.484
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 89 84 10. 61 3 12 22 0.12 31
28 0.096 33
+2 0 89 85 10. 61 3 12 22 0.12 31
28 0.098 33
+1 0 90 86 10. 62 3 12 22 0.12 31
28 0.10 33
-1 0 90 86 10. 62 3 12 22 0.12 31
28 0.10 33
-2 0 89 86 10. 62 3 12 22 0.12 31
28 0.10 33
-3 0 89 85 10. 61 3 12 22 0.12 31
28 0.098 33
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 85
No. of states in DFA: 581 (57 KB)
Total size of DFA: 118 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 80.17u 1.19s 81.36t Elapsed: 00:00:14
Total cpu time: 80.22u 1.22s 81.44t Elapsed: 00:00:15
Start: Wed Jan 16 12:52:37 2002 End: Wed Jan 16 12:52:52 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000